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authorOnderwaater <onderwaa@esrf.fr>2015-11-25 11:37:42 +0100
committerOnderwaater <onderwaa@esrf.fr>2015-11-25 11:37:42 +0100
commita6582c0e3cd9bf77f3554b2cbeee2e65d1478c78 (patch)
tree8dc73fd33ec085dc23cfef7880168feda13a0866
parent0a6258cd353f205fa4cf7c4decc6b83465f5accc (diff)
renaming of scripts + main folder
-rw-r--r--BINoculars/__init__.py100
-rw-r--r--binoculars-fitaid.py (renamed from fitaid.py)44
-rwxr-xr-xbinoculars-gui.py (renamed from gui.py)50
-rwxr-xr-xbinoculars-processgui.py (renamed from processgui.py)24
-rw-r--r--binoculars-server.py (renamed from server.py)10
-rwxr-xr-xbinoculars.py74
-rw-r--r--examples/scripts/demo.py16
-rw-r--r--examples/scripts/demo_fit.py14
8 files changed, 166 insertions, 166 deletions
diff --git a/BINoculars/__init__.py b/BINoculars/__init__.py
index dfbbec4..e7824cf 100644
--- a/BINoculars/__init__.py
+++ b/BINoculars/__init__.py
@@ -10,10 +10,10 @@ def run(args):
All additonal configuration file overides can be included
Returns
- A BINoculars space
+ A binoculars space
Examples:
- >>> space = BINoculars.run('config.txt 10')
+ >>> space = binoculars.run('config.txt 10')
>>> space
Axes (3 dimensions, 2848 points, 33.0 kB) {
Axis qx (min=-0.01, max=0.0, res=0.01, count=2)
@@ -22,14 +22,14 @@ def run(args):
}
'''
- import BINoculars.main
- BINoculars.util.register_python_executable(__file__)
- main = BINoculars.main.Main.from_args(args.split(' '))
- if isinstance(main.result, BINoculars.space.Space):
+ import binoculars.main
+ binoculars.util.register_python_executable(__file__)
+ main = binoculars.main.Main.from_args(args.split(' '))
+ if isinstance(main.result, binoculars.space.Space):
return main.result
if type(main.result) == bool:
filename = main.dispatcher.config.destination.final_filename()
- return BINoculars.space.Space.fromfile(filename)
+ return binoculars.space.Space.fromfile(filename)
def load(filename, key = None):
''' Parameters
@@ -38,10 +38,10 @@ def load(filename, key = None):
key: a tuple with slices in as much dimensions as the space is
Returns
- A BINoculars space
+ A binoculars space
Examples:
- >>> space = BINoculars.load('test.hdf5')
+ >>> space = binoculars.load('test.hdf5')
>>> space
Axes (3 dimensions, 2848 points, 33.0 kB) {
Axis qx (min=-0.01, max=0.0, res=0.01, count=2)
@@ -49,9 +49,9 @@ def load(filename, key = None):
Axis qz (min=0.48, max=4.03, res=0.01, count=356)
}
'''
- import BINoculars.space
+ import binoculars.space
if os.path.exists(filename):
- return BINoculars.space.Space.fromfile(filename, key = key)
+ return binoculars.space.Space.fromfile(filename, key = key)
else:
raise IOError("File '{0}' does not exist".format(filename))
@@ -62,7 +62,7 @@ def save(filename, space):
Parameters
filename: string
filename to which the data is saved. '.txt', '.hdf5' are supported.
- space: BINoculars space
+ space: binoculars space
the space containing the data that needs to be saved
Examples:
@@ -72,27 +72,27 @@ def save(filename, space):
Axis qy (min=-0.04, max=-0.01, res=0.01, count=4)
Axis qz (min=0.48, max=4.03, res=0.01, count=356)
}
- >>> BINoculars.save('test.hdf5', space)
+ >>> binoculars.save('test.hdf5', space)
'''
- import BINoculars.space, BINoculars.util
- if isinstance(space, BINoculars.space.Space):
+ import binoculars.space, binoculars.util
+ if isinstance(space, binoculars.space.Space):
ext = os.path.splitext(filename)[-1]
if ext == '.txt':
- BINoculars.util.space_to_txt(space, filename)
+ binoculars.util.space_to_txt(space, filename)
elif ext == '.edf':
- BINoculars.util.space_to_edf(space, filename)
+ binoculars.util.space_to_edf(space, filename)
else:
space.tofile(filename)
else:
- raise TypeError("'{0!r}' is not a BINoculars space".format(space))
+ raise TypeError("'{0!r}' is not a binoculars space".format(space))
def plotspace(space, log=True, clipping=0.0, fit=None, norm=None, colorbar=True, labels=True, **plotopts):
'''
plots a space with the correct axes. The space can be either one or two dimensinal.
Parameters
- space: BINoculars space
+ space: binoculars space
the space containing the data that needs to be plotted
log: bool
axes or colorscale logarithmic
@@ -116,33 +116,33 @@ def plotspace(space, log=True, clipping=0.0, fit=None, norm=None, colorbar=True,
Axis qy (min=-0.04, max=-0.01, res=0.01, count=4)
Axis qz (min=0.48, max=4.03, res=0.01, count=356)
}
- >>> BINoculars.plotspace('test.hdf5')
+ >>> binoculars.plotspace('test.hdf5')
'''
import matplotlib.pyplot as pyplot
- import BINoculars.plot, BINoculars.space
+ import binoculars.plot, binoculars.space
- if isinstance(space, BINoculars.space.Space):
+ if isinstance(space, binoculars.space.Space):
if space.dimension == 3:
from mpl_toolkits.mplot3d import Axes3D
ax = pyplot.gcf().gca(projection='3d')
- return BINoculars.plot.plot(space, pyplot.gcf(), ax, log=log, clipping=clipping, fit=None, norm=norm, colorbar=colorbar, labels=labels, **plotopts)
+ return binoculars.plot.plot(space, pyplot.gcf(), ax, log=log, clipping=clipping, fit=None, norm=norm, colorbar=colorbar, labels=labels, **plotopts)
if fit is not None and space.dimension == 2:
ax = pyplot.gcf().add_subplot(121)
- BINoculars.plot.plot(space, pyplot.gcf(), ax, log=log, clipping=clipping, fit=None, norm=norm, colorbar=colorbar, labels=labels, **plotopts)
+ binoculars.plot.plot(space, pyplot.gcf(), ax, log=log, clipping=clipping, fit=None, norm=norm, colorbar=colorbar, labels=labels, **plotopts)
ax = pyplot.gcf().add_subplot(122)
- return BINoculars.plot.plot(space, pyplot.gcf(), ax, log=log, clipping=clipping, fit=fit, norm=norm, colorbar=colorbar, labels=labels, **plotopts)
+ return binoculars.plot.plot(space, pyplot.gcf(), ax, log=log, clipping=clipping, fit=fit, norm=norm, colorbar=colorbar, labels=labels, **plotopts)
else:
- return BINoculars.plot.plot(space, pyplot.gcf(), pyplot.gca(), log=log, clipping=clipping, fit=fit, norm=norm, colorbar=colorbar, labels=labels, **plotopts)
+ return binoculars.plot.plot(space, pyplot.gcf(), pyplot.gca(), log=log, clipping=clipping, fit=fit, norm=norm, colorbar=colorbar, labels=labels, **plotopts)
else:
- raise TypeError("'{0!r}' is not a BINoculars space".format(space))
+ raise TypeError("'{0!r}' is not a binoculars space".format(space))
def transform(space, labels, resolutions, exprs):
'''
transformation of the coordinates.
Parameters
- space: BINoculars space
+ space: binoculars space
labels: list
a list of length N with the labels
resolutions: list
@@ -152,28 +152,28 @@ def transform(space, labels, resolutions, exprs):
all numpy funtions can be called without adding 'numpy.' to the functions.
Returns
- A BINoculars space of dimension N with labels and resolutions specified in the input
+ A binoculars space of dimension N with labels and resolutions specified in the input
Examples:
- >>> space = BINoculars.load('test.hdf5')
+ >>> space = binoculars.load('test.hdf5')
>>> space
Axes (3 dimensions, 2848 points, 33.0 kB) {
Axis qx (min=-0.01, max=0.0, res=0.01, count=2)
Axis qy (min=-0.04, max=-0.01, res=0.01, count=4)
Axis qz (min=0.48, max=4.03, res=0.01, count=356)
}
- >>> newspace = BINoculars.transform(space, ['twotheta'], [0.003], ['2 * arcsin(0.51 * (sqrt(qx**2 + qy**2 + qz**2) / (4 * pi)) / (pi * 180))'])
+ >>> newspace = binoculars.transform(space, ['twotheta'], [0.003], ['2 * arcsin(0.51 * (sqrt(qx**2 + qy**2 + qz**2) / (4 * pi)) / (pi * 180))'])
>>> newspace
Axes (1 dimensions, 152 points, 1.0 kB) {
Axis twotheta (min=0.066, max=0.519, res=0.003, count=152)
}
'''
- import BINoculars.util, BINoculars.space
- if isinstance(space, BINoculars.space.Space):
- transformation = BINoculars.util.transformation_from_expressions(space, exprs)
+ import binoculars.util, binoculars.space
+ if isinstance(space, binoculars.space.Space):
+ transformation = binoculars.util.transformation_from_expressions(space, exprs)
newspace = space.transform_coordinates(resolutions, labels, transformation)
else:
- raise TypeError("'{0!r}' is not a BINoculars space".format(space))
+ raise TypeError("'{0!r}' is not a binoculars space".format(space))
return newspace
def fitspace(space, function, guess = None):
@@ -181,7 +181,7 @@ def fitspace(space, function, guess = None):
fit the space data.
Parameters
- space: BINoculars space
+ space: binoculars space
function: list
a string with the name of the desired function. supported are:
lorentzian (automatically selects 1d or 2d), gaussian1d and voigt1d
@@ -189,10 +189,10 @@ def fitspace(space, function, guess = None):
a list of length N with the resolution per label
Returns
- A BINoculars fit object.
+ A binoculars fit object.
Examples:
- >>> fit = BINoculars.fitspace(space, 'lorentzian')
+ >>> fit = binoculars.fitspace(space, 'lorentzian')
>>> print fit.summary
I: 1.081e-07 +/- inf
loc: 0.3703 +/- inf
@@ -201,15 +201,15 @@ def fitspace(space, function, guess = None):
offset: -0.001888 +/- inf
>>> parameters = fit.parameters
>>> data = fit.fitdata
- >>> BINoculars.plotspace(space, fit = data)
+ >>> binoculars.plotspace(space, fit = data)
'''
- import BINoculars.fit
- if isinstance(space, BINoculars.space.Space):
- fitclass = BINoculars.fit.get_class_by_name(function)
+ import binoculars.fit
+ if isinstance(space, binoculars.space.Space):
+ fitclass = binoculars.fit.get_class_by_name(function)
return fitclass(space, guess)
else:
- raise TypeError("'{0!r}' is not a BINoculars space".format(space))
+ raise TypeError("'{0!r}' is not a binoculars space".format(space))
return newspace
@@ -221,7 +221,7 @@ def info(filename):
filename: filename or space
Examples:
- >>> print BINoculars.info('test.hdf5')
+ >>> print binoculars.info('test.hdf5')
Axes (3 dimensions, 46466628 points, 531.0 MB) {
Axis H (min=-0.1184, max=0.0632, res=0.0008, count=228)
Axis K (min=-1.1184, max=-0.9136, res=0.0008, count=257)
@@ -233,8 +233,8 @@ def info(filename):
[input]
}
origin = test.hdf5
- >>> space = BINoculars.load('test.hdf5')
- >>> print BINoculars.info(space)
+ >>> space = binoculars.load('test.hdf5')
+ >>> print binoculars.info(space)
Axes (3 dimensions, 46466628 points, 531.0 MB) {
Axis H (min=-0.1184, max=0.0632, res=0.0008, count=228)
Axis K (min=-1.1184, max=-0.9136, res=0.0008, count=257)
@@ -249,19 +249,19 @@ def info(filename):
'''
- import BINoculars.space
+ import binoculars.space
ret = ''
- if isinstance(filename, BINoculars.space.Space):
+ if isinstance(filename, binoculars.space.Space):
ret += '{!r}\n{!r}'.format(filename, filename.config)
elif type(filename) == str:
if os.path.exists(filename):
try:
- axes = BINoculars.space.Axes.fromfile(filename)
+ axes = binoculars.space.Axes.fromfile(filename)
except Exception as e:
raise IOError('{0}: unable to load Space: {1!r}'.format(filename, e))
ret += '{!r}\n'.format(axes)
try:
- config = BINoculars.util.ConfigFile.fromfile(filename)
+ config = binoculars.util.ConfigFile.fromfile(filename)
except Exception as e:
raise IOError('{0}: unable to load util.ConfigFile: {1!r}'.format(filename, e))
ret += '{!r}'.format(config)
diff --git a/fitaid.py b/binoculars-fitaid.py
index a9728b9..af65ba0 100644
--- a/fitaid.py
+++ b/binoculars-fitaid.py
@@ -3,7 +3,7 @@ import sys
import numpy
import os.path
from PyQt4 import QtGui, QtCore, Qt
-import BINoculars.main, BINoculars.space, BINoculars.plot, BINoculars.fit, BINoculars.util
+import binoculars.main, binoculars.space, binoculars.plot, binoculars.fit, binoculars.util
from scipy.interpolate import griddata
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg, NavigationToolbar2QTAgg
@@ -44,7 +44,7 @@ class Window(QtGui.QMainWindow):
def newproject(self):
dialog = QtGui.QFileDialog(self, "project filename");
- dialog.setFilter('BINoculars fit file (*.fit)');
+ dialog.setFilter('binoculars fit file (*.fit)');
dialog.setDefaultSuffix('fit');
dialog.setFileMode(QtGui.QFileDialog.AnyFile);
dialog.setAcceptMode(QtGui.QFileDialog.AcceptSave);
@@ -63,7 +63,7 @@ class Window(QtGui.QMainWindow):
def loadproject(self, filename = None):
if not filename:
dialog = QtGui.QFileDialog(self, "Load project");
- dialog.setFilter('BINoculars fit file (*.fit)');
+ dialog.setFilter('binoculars fit file (*.fit)');
dialog.setFileMode(QtGui.QFileDialog.ExistingFiles);
dialog.setAcceptMode(QtGui.QFileDialog.AcceptOpen);
if not dialog.exec_():
@@ -89,7 +89,7 @@ class Window(QtGui.QMainWindow):
if not filename:
dialog = QtGui.QFileDialog(self, "Import spaces");
- dialog.setFilter('BINoculars space file (*.hdf5)');
+ dialog.setFilter('binoculars space file (*.hdf5)');
dialog.setFileMode(QtGui.QFileDialog.ExistingFiles);
dialog.setAcceptMode(QtGui.QFileDialog.AcceptOpen);
if not dialog.exec_():
@@ -141,9 +141,9 @@ class TopWidget(QtGui.QWidget):
self.functions = list()
self.function_box = QtGui.QComboBox()
- for function in dir(BINoculars.fit):
- cls = getattr(BINoculars.fit, function)
- if isinstance(cls, type) and issubclass(cls, BINoculars.fit.PeakFitBase):
+ for function in dir(binoculars.fit):
+ cls = getattr(binoculars.fit, function)
+ if isinstance(cls, type) and issubclass(cls, binoculars.fit.PeakFitBase):
self.functions.append(cls)
self.function_box.addItem(function)
self.function_box.setCurrentIndex(self.function_box.findText('PolarLorentzian2D'))
@@ -345,7 +345,7 @@ class TableWidget(QtGui.QWidget):
self.table.insertRow(index)
- axes = BINoculars.space.Axes.fromfile(filename)
+ axes = binoculars.space.Axes.fromfile(filename)
checkboxwidget = QtGui.QCheckBox()
checkboxwidget.rodkey = rodkey
@@ -428,14 +428,14 @@ class FitData(object):
if not spacename:
raise IOError('Select proper input')
db[rodkey].attrs['filename'] = spacename
- self.axdict[rodkey] = BINoculars.space.Axes.fromfile(spacename)
+ self.axdict[rodkey] = binoculars.space.Axes.fromfile(spacename)
def create_rod(self, rodkey, spacename):
with h5py.File(self.filename,'a') as db:
if rodkey not in db.keys():
db.create_group(rodkey)
db[rodkey].attrs['filename'] = spacename
- self.axdict[rodkey] = BINoculars.space.Axes.fromfile(spacename)
+ self.axdict[rodkey] = binoculars.space.Axes.fromfile(spacename)
def delete_rod(self, rodkey):
with h5py.File(self.filename,'a') as db:
@@ -503,7 +503,7 @@ class RodData(FitData):
axindex = axes.index(self.axis)
ax = axes[axindex]
- bins = BINoculars.space.get_bins(ax, self.resolution)
+ bins = binoculars.space.get_bins(ax, self.resolution)
return bins, ax, axindex
def rodlength(self):
@@ -511,7 +511,7 @@ class RodData(FitData):
return numpy.alen(bins) - 1
def get_index_value(self, index):
- return BINoculars.space.get_axis_values(self.axdict[self.rodkey], self.axis, self.resolution)[index]
+ return binoculars.space.get_axis_values(self.axdict[self.rodkey], self.axis, self.resolution)[index]
def get_key(self, index):
axes = self.axdict[self.rodkey]
@@ -524,7 +524,7 @@ class RodData(FitData):
def space_from_index(self, index):
with h5py.File(self.filename,'a') as db:
filename = db[self.rodkey].attrs['filename']
- return BINoculars.space.Space.fromfile(filename, self.get_key(index)).project(self.axis)
+ return binoculars.space.Space.fromfile(filename, self.get_key(index)).project(self.axis)
def save_data(self, index, key, data):
with h5py.File(self.filename,'a') as db:
@@ -587,7 +587,7 @@ class RodData(FitData):
with h5py.File(self.filename,'a') as db:
group = db[self.rodkey][self.slicekey]['attrs']
if key in group.keys():
- return BINoculars.space.get_axis_values(axes, self.axis, self.resolution), numpy.ma.array(group[key], mask = numpy.array(group[mkey]))
+ return binoculars.space.get_axis_values(axes, self.axis, self.resolution), numpy.ma.array(group[key], mask = numpy.array(group[mkey]))
def load_loc(self, index):
loc = list()
@@ -666,15 +666,15 @@ class FitWidget(QtGui.QWidget):
if fitdata is not None:
if space.dimension == 1:
self.ax = self.figure.add_subplot(111)
- BINoculars.plot.plot(space, self.figure, self.ax, fit = fitdata)
+ binoculars.plot.plot(space, self.figure, self.ax, fit = fitdata)
elif space.dimension == 2:
self.ax = self.figure.add_subplot(121)
- BINoculars.plot.plot(space, self.figure, self.ax, fit = None)
+ binoculars.plot.plot(space, self.figure, self.ax, fit = None)
self.ax = self.figure.add_subplot(122)
- BINoculars.plot.plot(space, self.figure, self.ax, fit = fitdata)
+ binoculars.plot.plot(space, self.figure, self.ax, fit = fitdata)
else:
self.ax = self.figure.add_subplot(111)
- BINoculars.plot.plot(space, self.figure, self.ax)
+ binoculars.plot.plot(space, self.figure, self.ax)
self.figure.suptitle('{0}, res = {1}, {2} = {3}'.format(self.database.rodkey, self.database.resolution, label, info))
self.canvas.draw()
@@ -972,15 +972,15 @@ class IntegrateWidget(QtGui.QWidget):
if interdata is not None:
if space.dimension == 1:
self.ax = self.figure.add_subplot(111)
- BINoculars.plot.plot(space, self.figure, self.ax, fit = interdata)
+ binoculars.plot.plot(space, self.figure, self.ax, fit = interdata)
elif space.dimension == 2:
self.ax = self.figure.add_subplot(121)
- BINoculars.plot.plot(space, self.figure, self.ax, fit = None)
+ binoculars.plot.plot(space, self.figure, self.ax, fit = None)
self.ax = self.figure.add_subplot(122)
- BINoculars.plot.plot(space, self.figure, self.ax, fit = interdata)
+ binoculars.plot.plot(space, self.figure, self.ax, fit = interdata)
else:
self.ax = self.figure.add_subplot(111)
- BINoculars.plot.plot(space, self.figure, self.ax)
+ binoculars.plot.plot(space, self.figure, self.ax)
self.figure.suptitle('{0}, res = {1}, {2} = {3}'.format(self.database.rodkey, self.database.resolution, label, info))
diff --git a/gui.py b/binoculars-gui.py
index fdfef91..15143a6 100755
--- a/gui.py
+++ b/binoculars-gui.py
@@ -4,7 +4,7 @@ import sys
import os
import glob
from PyQt4 import QtGui, QtCore, Qt
-import BINoculars.main, BINoculars.space, BINoculars.plot, BINoculars.util
+import binoculars.main, binoculars.space, binoculars.plot, binoculars.util
import numpy
import json
import itertools
@@ -277,7 +277,7 @@ class Window(QtGui.QMainWindow):
def loadproject(self, filename = None):
if not filename:
dialog = QtGui.QFileDialog(self, "Load project");
- dialog.setFilter('BINoculars project file (*.proj)');
+ dialog.setFilter('binoculars project file (*.proj)');
dialog.setFileMode(QtGui.QFileDialog.ExistingFiles);
dialog.setAcceptMode(QtGui.QFileDialog.AcceptOpen);
if not dialog.exec_():
@@ -299,7 +299,7 @@ class Window(QtGui.QMainWindow):
def saveproject(self):
widget = self.tab_widget.currentWidget()
dialog = QtGui.QFileDialog(self, "Save project");
- dialog.setFilter('BINoculars project file (*.proj)');
+ dialog.setFilter('binoculars project file (*.proj)');
dialog.setDefaultSuffix('proj');
dialog.setFileMode(QtGui.QFileDialog.AnyFile);
dialog.setAcceptMode(QtGui.QFileDialog.AcceptSave);
@@ -320,7 +320,7 @@ class Window(QtGui.QMainWindow):
self.newproject()
dialog = QtGui.QFileDialog(self, "Import spaces");
- dialog.setFilter('BINoculars space file (*.hdf5)');
+ dialog.setFilter('binoculars space file (*.hdf5)');
dialog.setFileMode(QtGui.QFileDialog.ExistingFiles);
dialog.setAcceptMode(QtGui.QFileDialog.AcceptOpen);
if not dialog.exec_():
@@ -357,7 +357,7 @@ class Window(QtGui.QMainWindow):
def merge(self):
widget = self.tab_widget.currentWidget()
dialog = QtGui.QFileDialog(self, "save mesh");
- dialog.setFilter('BINoculars space file (*.hdf5)');
+ dialog.setFilter('binoculars space file (*.hdf5)');
dialog.setDefaultSuffix('hdf5');
dialog.setFileMode(QtGui.QFileDialog.AnyFile);
dialog.setAcceptMode(QtGui.QFileDialog.AcceptSave);
@@ -374,7 +374,7 @@ class Window(QtGui.QMainWindow):
def subtract(self):
dialog = QtGui.QFileDialog(self, "subtract space");
- dialog.setFilter('BINoculars space file (*.hdf5)');
+ dialog.setFilter('binoculars space file (*.hdf5)');
dialog.setFileMode(QtGui.QFileDialog.ExistingFiles);
dialog.setAcceptMode(QtGui.QFileDialog.AcceptOpen);
if not dialog.exec_():
@@ -402,7 +402,7 @@ class Window(QtGui.QMainWindow):
self.ip, self.port = server.server_address
if startq:
- cmd = ['python', os.path.join(os.path.dirname(__file__), 'server.py'), str(self.ip), str(self.port)]
+ cmd = ['python', os.path.join(os.path.dirname(__file__), 'binoculars-server.py'), str(self.ip), str(self.port)]
self.pro = subprocess.Popen(cmd, stdin=None, stdout=None, stderr=None, preexec_fn=os.setsid)
server_thread = threading.Thread(target=server.serve_forever)
@@ -454,7 +454,7 @@ class UpdateThread(QtCore.QThread):
fq = Queue.Queue()
data_found = QtCore.pyqtSignal(object)
def run(self):
- delay = BINoculars.util.loop_delayer(1)
+ delay = binoculars.util.loop_delayer(1)
jobs = []
labels = []
while 1:
@@ -466,7 +466,7 @@ class UpdateThread(QtCore.QThread):
jobs.append([space])
labels.append(command)
elif self.q.empty() and len(jobs) > 0:
- self.fq.put((labels.pop(), BINoculars.space.sum(jobs.pop())))
+ self.fq.put((labels.pop(), binoculars.space.sum(jobs.pop())))
self.data_found.emit('data found')
else:
next(delay)
@@ -476,12 +476,12 @@ class ThreadedTCPServer(SocketServer.ThreadingMixIn, SocketServer.TCPServer):
class SpaceTCPHandler(SocketServer.BaseRequestHandler):
def handle(self):
- command, config, metadata, axes, photons, contributions = BINoculars.util.socket_recieve(self)
- space = BINoculars.space.Space(BINoculars.space.Axes.fromarray(axes))
- space.config = BINoculars.util.ConfigFile.fromserial(config)
+ command, config, metadata, axes, photons, contributions = binoculars.util.socket_recieve(self)
+ space = binoculars.space.Space(binoculars.space.Axes.fromarray(axes))
+ space.config = binoculars.util.ConfigFile.fromserial(config)
space.config.command = command
space.config.origin = 'server'
- space.metadata = BINoculars.util.MetaData.fromserial(metadata)
+ space.metadata = binoculars.util.MetaData.fromserial(metadata)
space.photons = photons
space.contributions = contributions
self.server.q.put((command, space))
@@ -801,7 +801,7 @@ class ProjectWidget(QtGui.QWidget):
space = space.reorder(list(ax.label for ax in space.axes)[::-1])
self.ax.space = space
- im = BINoculars.plot.plot(space, self.figure, self.ax, log = log, loglog = loglog, label = basename, norm = norm[i])
+ im = binoculars.plot.plot(space, self.figure, self.ax, log = log, loglog = loglog, label = basename, norm = norm[i])
self.figure_images.append(im)
@@ -814,7 +814,7 @@ class ProjectWidget(QtGui.QWidget):
def merge(self, filename):
try:
spaces = tuple(self.table.getspace(selected_filename) for selected_filename in self.table.selection)
- newspace = BINoculars.space.sum(BINoculars.space.make_compatible(spaces))
+ newspace = binoculars.space.sum(binoculars.space.make_compatible(spaces))
newspace.tofile(filename)
map(self.table.remove, self.table.selection)
self.table.addspace(filename, True)
@@ -823,11 +823,11 @@ class ProjectWidget(QtGui.QWidget):
def subtractspace(self, filename):
try:
- subtractspace = BINoculars.space.Space.fromfile(filename)
+ subtractspace = binoculars.space.Space.fromfile(filename)
spaces = tuple(self.table.getspace(selected_filename) for selected_filename in self.table.selection)
newspaces = tuple(space - subtractspace for space in spaces)
for space, selected_filename in zip(newspaces, self.table.selection):
- newfilename = BINoculars.util.find_unused_filename(selected_filename)
+ newfilename = binoculars.util.find_unused_filename(selected_filename)
space.tofile(newfilename)
self.table.remove(selected_filename)
self.table.addspace(newfilename, True)
@@ -935,14 +935,14 @@ class ProjectWidget(QtGui.QWidget):
space = space.project(*projection)
space.trim()
- outfile = BINoculars.util.find_unused_filename(fname)
+ outfile = binoculars.util.find_unused_filename(fname)
if ext == '.edf':
- BINoculars.util.space_to_edf(space, outfile)
+ binoculars.util.space_to_edf(space, outfile)
self.parent.statusbar.showMessage('saved at {0}'.format(outfile))
elif ext == '.txt':
- BINoculars.util.space_to_txt(space, outfile)
+ binoculars.util.space_to_txt(space, outfile)
self.parent.statusbar.showMessage('saved at {0}'.format(outfile))
elif ext == '.hdf5':
@@ -963,7 +963,7 @@ class SpaceContainer(QtGui.QTableWidgetItem):
def get_space(self, key = None):
if self.space == None:
- return BINoculars.space.Space.fromfile(self.label, key = key)
+ return binoculars.space.Space.fromfile(self.label, key = key)
else:
if key == None:
key = Ellipsis
@@ -971,13 +971,13 @@ class SpaceContainer(QtGui.QTableWidgetItem):
def get_ax(self):
if self.space == None:
- return BINoculars.space.Axes.fromfile(self.label)
+ return binoculars.space.Axes.fromfile(self.label)
else:
return self.space.axes
def add_to_space(space):
if self.space == None:
- newspace = BINoculars.space.Space.fromfile(self.label) + space
+ newspace = binoculars.space.Space.fromfile(self.label) + space
newspsace.tofile(self.label)
else:
self.space += space
@@ -1049,7 +1049,7 @@ class TableWidget(QtGui.QWidget):
axes = tuple(container.get_ax() for checkbox, container in zip(self.itercheckbox(), self.itercontainer()) if checkbox.checkState())
if len(axes) > 0:
try:
- return BINoculars.space.Axes(BINoculars.space.union_unequal_axes(ax) for ax in zip(*axes))
+ return binoculars.space.Axes(binoculars.space.union_unequal_axes(ax) for ax in zip(*axes))
except ValueError:
return ()
else:
@@ -1270,7 +1270,7 @@ def is_empty(key):
if __name__ == '__main__':
app = QtGui.QApplication(sys.argv)
- BINoculars.space.silence_numpy_errors()
+ binoculars.space.silence_numpy_errors()
main = Window()
main.resize(1000, 600)
diff --git a/processgui.py b/binoculars-processgui.py
index 838ba3c..865d83e 100755
--- a/processgui.py
+++ b/binoculars-processgui.py
@@ -1,6 +1,6 @@
#!/usr/bin/env python
"""
-BINoculars gui for data processing
+binoculars gui for data processing
Created on 2015-06-04
author: Remy Nencib (remy.nencib@esrf.r)
"""
@@ -14,7 +14,7 @@ import sys,os
import itertools
import inspect
import glob
-import BINoculars.util, BINoculars.main
+import binoculars.util, binoculars.main
import time
#--------------------------------------------CREATE MAIN WINDOW----------------------------------------
@@ -118,7 +118,7 @@ class Window(QtGui.QMainWindow):
if pd.wasCanceled():
raise KeyboardInterrupt
QtGui.QApplication.processEvents()
- return BINoculars.main.Main.from_object(cfg, command)
+ return binoculars.main.Main.from_object(cfg, command)
try:
for index in range(self.ListCommand.rowCount()):
pd.setValue(index)
@@ -270,7 +270,7 @@ class Conf_Tab(QtGui.QWidget):
self.Inp = Table(QtGui.QLabel('<strong>Input :</strong>'))
self.Pro = Table(QtGui.QLabel('<strong>Projection :<strong>'))
self.select = QtGui.QComboBox()
- backends = list(backend.lower() for backend in BINoculars.util.get_backends())
+ backends = list(backend.lower() for backend in binoculars.util.get_backends())
#we add the list of different backends on the select combobox
self.select.addItems(QtCore.QStringList(backends))
self.add = QtGui.QPushButton('add')
@@ -308,32 +308,32 @@ class Conf_Tab(QtGui.QWidget):
self.setLayout(vbox)
#Here we call all methods for selected an ellement on differents combobox
- self.Dis.add_to_combo(QtCore.QStringList(BINoculars.util.get_dispatchers()))
+ self.Dis.add_to_combo(QtCore.QStringList(binoculars.util.get_dispatchers()))
self.select.activated['QString'].connect(self.DataCombo)
self.Inp.combobox.activated.connect(self.DataTableInp)
self.Pro.combobox.activated.connect(self.DataTableInpPro)
self.Dis.combobox.activated.connect(self.DataTableInpDis)
def DataCombo(self,text):
- self.Inp.add_to_combo(QtCore.QStringList(BINoculars.util.get_inputs(str(text))))
- self.Pro.add_to_combo(QtCore.QStringList(BINoculars.util.get_projections(str(text))))
+ self.Inp.add_to_combo(QtCore.QStringList(binoculars.util.get_inputs(str(text))))
+ self.Pro.add_to_combo(QtCore.QStringList(binoculars.util.get_projections(str(text))))
self.DataTableInp()
self.DataTableInpPro()
self.DataTableInpDis()
def DataTableInp(self):
backend = str(self.select.currentText())
- inp = BINoculars.util.get_input_configkeys(backend, str(self.Inp.combobox.currentText()))
+ inp = binoculars.util.get_input_configkeys(backend, str(self.Inp.combobox.currentText()))
self.Inp.addDataConf(inp)
def DataTableInpPro(self):
backend = str(self.select.currentText())
- proj = BINoculars.util.get_projection_configkeys(backend, str(self.Pro.combobox.currentText()))
+ proj = binoculars.util.get_projection_configkeys(backend, str(self.Pro.combobox.currentText()))
self.Pro.addDataConf(proj)
def DataTableInpDis(self):
backend = str(self.select.currentText())
- disp = BINoculars.util.get_dispatcher_configkeys(str(self.Dis.combobox.currentText()))
+ disp = binoculars.util.get_dispatcher_configkeys(str(self.Dis.combobox.currentText()))
self.Dis.addDataConf(disp)
#The save method we take all ellements on tables and we put them in this format {0} = {1} #{2}
@@ -373,7 +373,7 @@ class Conf_Tab(QtGui.QWidget):
value = '{0}:{1}'.format(str(self.select.currentText()).strip(),value)
inPro[key] = value
- cfg = BINoculars.util.ConfigFile('processgui {0}'.format(time.strftime('%d %b %Y %H:%M:%S', time.localtime())))
+ cfg = binoculars.util.ConfigFile('processgui {0}'.format(time.strftime('%d %b %Y %H:%M:%S', time.localtime())))
setattr(cfg, 'input', inInp)
setattr(cfg, 'dispatcher', inDis)
setattr(cfg, 'projection', inPro)
@@ -381,7 +381,7 @@ class Conf_Tab(QtGui.QWidget):
#This method take elements on a text file or the binocular script and put them on tables
def read_data(self, filename):
- cfg = BINoculars.util.ConfigFile.fromtxtfile(str(filename))
+ cfg = binoculars.util.ConfigFile.fromtxtfile(str(filename))
input_type = cfg.input['type']
backend, value = input_type.strip(' ').split(':')
self.select.setCurrentIndex(self.select.findText(backend, QtCore.Qt.MatchFixedString))
diff --git a/server.py b/binoculars-server.py
index 91ec1ea..23b61c7 100644
--- a/server.py
+++ b/binoculars-server.py
@@ -11,7 +11,7 @@ import threading
import SocketServer
import time
import sys
-import BINoculars.util, BINoculars.main
+import binoculars.util, binoculars.main
import traceback
import re
import json
@@ -66,11 +66,11 @@ def process(run_event, ip, port, q):
overrides = parse_job(job)[1]# [1] are the succesfully parsed jobs
print 'Start processing: {0}'.format(command)
try:
- configobj = BINoculars.util.ConfigFile.fromtxtfile(configfilename, overrides = overrides)
- if BINoculars.util.parse_bool(configobj.dispatcher['send_to_gui']):
+ configobj = binoculars.util.ConfigFile.fromtxtfile(configfilename, overrides = overrides)
+ if binoculars.util.parse_bool(configobj.dispatcher['send_to_gui']):
configobj.dispatcher['host'] = ip
configobj.dispatcher['port'] = port
- BINoculars.main.Main.from_object(configobj, [command])
+ binoculars.main.Main.from_object(configobj, [command])
print 'Succesfully finished processing: {0}.'.format(command)
except Exception as exc:
errorfilename = 'error_{0}.txt'.format(command)
@@ -90,7 +90,7 @@ if __name__ == '__main__':
q = Queue.Queue()
- BINoculars.util.register_python_executable(os.path.join(os.path.dirname(__file__), 'binoculars.py'))
+ binoculars.util.register_python_executable(os.path.join(os.path.dirname(__file__), 'binoculars.py'))
HOST, PORT = socket.gethostbyname(socket.gethostname()), 0
diff --git a/binoculars.py b/binoculars.py
index a14a238..986e439 100755
--- a/binoculars.py
+++ b/binoculars.py
@@ -5,7 +5,7 @@ import os
import argparse
import numpy
-import BINoculars.space, BINoculars.util
+import binoculars.space, binoculars.util
### INFO
def command_info(args):
@@ -18,19 +18,19 @@ def command_info(args):
if args.output:
if len(args.infile)>1:
print 'only one space file argument is support with extractconfig -> using the first'
- config = BINoculars.util.ConfigFile.fromfile(args.infile[0])
+ config = binoculars.util.ConfigFile.fromfile(args.infile[0])
config.totxtfile(args.output)
else:
for f in args.infile:
try:
- axes = BINoculars.space.Axes.fromfile(f)
+ axes = binoculars.space.Axes.fromfile(f)
except Exception as e:
print '{0}: unable to load Space: {1!r}'.format(f, e)
else:
print '{0} \n{1!r}'.format(f, axes)
if args.config:
try:
- config = BINoculars.util.ConfigFile.fromfile(f)
+ config = binoculars.util.ConfigFile.fromfile(f)
except Exception as e:
print '{0}: unable to load util.ConfigFile: {1!r}'.format(f, e)
else:
@@ -41,7 +41,7 @@ def command_info(args):
def command_convert(args):
parser = argparse.ArgumentParser(prog='binoculars convert')
parser.add_argument('--wait', action='store_true', help='wait for input files to appear')
- BINoculars.util.argparse_common_arguments(parser, 'project', 'slice', 'pslice', 'rebin', 'transform', 'subtract')
+ binoculars.util.argparse_common_arguments(parser, 'project', 'slice', 'pslice', 'rebin', 'transform', 'subtract')
parser.add_argument('--read-trusted-zpi', action='store_true', help='read legacy .zpi files, ONLY FROM A TRUSTED SOURCE!')
parser.add_argument('infile', help='input file, must be a .hdf5')
parser.add_argument('outfile', help='output file, can be .hdf5 or .edf or .txt')
@@ -49,30 +49,30 @@ def command_convert(args):
args = parser.parse_args(args)
if args.wait:
- BINoculars.util.statusnl('waiting for {0} to appear'.format(args.infile))
- BINoculars.util.wait_for_file(args.infile)
- BINoculars.util.statusnl('processing...')
+ binoculars.util.statusnl('waiting for {0} to appear'.format(args.infile))
+ binoculars.util.wait_for_file(args.infile)
+ binoculars.util.statusnl('processing...')
if args.infile.endswith('.zpi'):
if not args.read_trusted_zpi:
print 'error: .zpi files are unsafe, use --read-trusted-zpi to open'
sys.exit(1)
- space = BINoculars.util.zpi_load(args.infile)
+ space = binoculars.util.zpi_load(args.infile)
else:
- space = BINoculars.space.Space.fromfile(args.infile)
+ space = binoculars.space.Space.fromfile(args.infile)
ext = os.path.splitext(args.outfile)[-1]
if args.subtract:
- space -= BINoculars.space.Space.fromfile(args.subtract)
+ space -= binoculars.space.Space.fromfile(args.subtract)
- space, info = BINoculars.util.handle_ordered_operations(space, args)
+ space, info = binoculars.util.handle_ordered_operations(space, args)
if ext == '.edf':
- BINoculars.util.space_to_edf(space, args.outfile)
+ binoculars.util.space_to_edf(space, args.outfile)
print 'saved at {0}'.format(args.outfile)
elif ext == '.txt':
- BINoculars.util.space_to_txt(space, args.outfile)
+ binoculars.util.space_to_txt(space, args.outfile)
print 'saved at {0}'.format(args.outfile)
elif ext == '.hdf5':
@@ -87,19 +87,19 @@ def command_convert(args):
### PLOT
def command_plot(args):
import matplotlib.pyplot as pyplot
- import BINoculars.fit, BINoculars.plot
+ import binoculars.fit, binoculars.plot
parser = argparse.ArgumentParser(prog='binoculars plot')
parser.add_argument('infile', nargs='+')
- BINoculars.util.argparse_common_arguments(parser, 'savepdf', 'savefile', 'clip', 'nolog', 'project', 'slice', 'pslice', 'subtract', 'rebin', 'transform')
+ binoculars.util.argparse_common_arguments(parser, 'savepdf', 'savefile', 'clip', 'nolog', 'project', 'slice', 'pslice', 'subtract', 'rebin', 'transform')
parser.add_argument('--multi', default=None, choices=('grid', 'stack'))
parser.add_argument('--fit', default = None)
parser.add_argument('--guess', default = None)
args = parser.parse_args(args)
if args.subtract:
- subtrspace = BINoculars.space.Space.fromfile(args.subtract)
- subtrspace, subtrinfo = BINoculars.util.handle_ordered_operations(subtrspace, args, auto3to2=True)
+ subtrspace = binoculars.space.Space.fromfile(args.subtract)
+ subtrspace, subtrinfo = binoculars.util.handle_ordered_operations(subtrspace, args, auto3to2=True)
args.nolog = True
guess = []
@@ -114,12 +114,12 @@ def command_plot(args):
plotrows = int(numpy.ceil(float(plotcount) / plotcolumns))
for i, filename in enumerate(args.infile):
- space = BINoculars.space.Space.fromfile(filename)
- space, info = BINoculars.util.handle_ordered_operations(space, args, auto3to2=True)
+ space = binoculars.space.Space.fromfile(filename)
+ space, info = binoculars.util.handle_ordered_operations(space, args, auto3to2=True)
fitdata = None
if args.fit:
- fit = BINoculars.fit.get_class_by_name(args.fit)(space, guess)
+ fit = binoculars.fit.get_class_by_name(args.fit)(space, guess)
print fit
if fit.success:
fitdata = fit.fitdata
@@ -144,7 +144,7 @@ def command_plot(args):
if args.multi == 'grid':
pyplot.subplot(plotrows, plotcolumns, i+1)
- BINoculars.plot.plot(space, pyplot.gcf(), pyplot.gca(), label=basename, log=not args.nolog, clipping=float(args.clip), fit=fitdata)
+ binoculars.plot.plot(space, pyplot.gcf(), pyplot.gca(), label=basename, log=not args.nolog, clipping=float(args.clip), fit=fitdata)
if plotcount > 1 and args.multi == 'grid':
pyplot.gca().set_title(basename)
@@ -169,7 +169,7 @@ def command_plot(args):
#print 'saved at {0}'.format(args.savefile)
else:
filename = '{0}_plot.pdf'.format(os.path.splitext(args.infile[0])[0])
- filename = BINoculars.util.find_unused_filename(filename)
+ filename = binoculars.util.find_unused_filename(filename)
pyplot.savefig(filename)
#print 'saved at {0}'.format(filename)
else:
@@ -179,7 +179,7 @@ def command_plot(args):
### FIT
def command_fit(args):
import matplotlib.pyplot as pyplot
- import BINoculars.fit, BINoculars.plot
+ import binoculars.fit, binoculars.plot
parser = argparse.ArgumentParser(prog='binoculars fit')
parser.add_argument('infile')
@@ -187,10 +187,10 @@ def command_fit(args):
parser.add_argument('resolution')
parser.add_argument('func')
parser.add_argument('--follow', action='store_true', help='use the result of the previous fit as guess for the next')
- BINoculars.util.argparse_common_arguments(parser, 'savepdf', 'savefile', 'clip', 'nolog')
+ binoculars.util.argparse_common_arguments(parser, 'savepdf', 'savefile', 'clip', 'nolog')
args = parser.parse_args(args)
- axes = BINoculars.space.Axes.fromfile(args.infile)
+ axes = binoculars.space.Axes.fromfile(args.infile)
axindex = axes.index(args.axis)
ax = axes[axindex]
axlabel = ax.label
@@ -209,17 +209,17 @@ def command_fit(args):
if args.savepdf or args.savefile:
if args.savefile:
- filename = BINoculars.util.filename_enumerator(args.savefile)
+ filename = binoculars.util.filename_enumerator(args.savefile)
else:
- filename = BINoculars.util.filename_enumerator('{0}_fit.pdf'.format(basename))
+ filename = binoculars.util.filename_enumerator('{0}_fit.pdf'.format(basename))
- fitclass = BINoculars.fit.get_class_by_name(args.func)
+ fitclass = binoculars.fit.get_class_by_name(args.func)
for start, stop in zip(bins[:-1], bins[1:]):
info = []
key = [slice(None) for i in axes]
key[axindex] = slice(start, stop)
- newspace = BINoculars.space.Space.fromfile(args.infile, key)
+ newspace = binoculars.space.Space.fromfile(args.infile, key)
left, right = newspace.axes[axindex].min,newspace.axes[axindex].max
if newspace.dimension == axes.dimension:
newspace = newspace.project(axindex)
@@ -248,13 +248,13 @@ def command_fit(args):
if newspace.dimension == 1:
pyplot.figure(figsize=(12, 9))
pyplot.subplot(111)
- BINoculars.plot.plot(newspace, pyplot.gcf(), pyplot.gca(), label=basename, log=not args.nolog, clipping=float(args.clip), fit = fit)
+ binoculars.plot.plot(newspace, pyplot.gcf(), pyplot.gca(), label=basename, log=not args.nolog, clipping=float(args.clip), fit = fit)
elif newspace.dimension == 2:
pyplot.figure(figsize=(12, 9))
pyplot.subplot(121)
- BINoculars.plot.plot(newspace, pyplot.gcf(), pyplot.gca(), label=basename, log=not args.nolog, clipping=float(args.clip), fit = None)
+ binoculars.plot.plot(newspace, pyplot.gcf(), pyplot.gca(), label=basename, log=not args.nolog, clipping=float(args.clip), fit = None)
pyplot.subplot(122)
- BINoculars.plot.plot(newspace, pyplot.gcf(), pyplot.gca(), label=basename, log=not args.nolog, clipping=float(args.clip), fit = fit)
+ binoculars.plot.plot(newspace, pyplot.gcf(), pyplot.gca(), label=basename, log=not args.nolog, clipping=float(args.clip), fit = fit)
info.append('sliced in {0} from {1} to {2}'.format(axlabel, left, right))
pyplot.suptitle('{0}'.format(' '.join(info)))
@@ -300,10 +300,10 @@ def command_fit(args):
### PROCESS
def command_process(args):
- import BINoculars.main
+ import binoculars.main
- BINoculars.util.register_python_executable(__file__)
- BINoculars.main.Main.from_args(args)# start of main thread
+ binoculars.util.register_python_executable(__file__)
+ binoculars.main.Main.from_args(args)# start of main thread
@@ -325,7 +325,7 @@ run binoculars COMMAND --help more info on that command
if __name__ == '__main__':
- BINoculars.space.silence_numpy_errors()
+ binoculars.space.silence_numpy_errors()
subcommands = {'info': command_info, 'convert': command_convert, 'plot': command_plot, 'fit': command_fit, 'process': command_process}
diff --git a/examples/scripts/demo.py b/examples/scripts/demo.py
index 8848c27..57ef2f1 100644
--- a/examples/scripts/demo.py
+++ b/examples/scripts/demo.py
@@ -1,8 +1,8 @@
-import BINoculars
+import binoculars
# to load a binoculars space file in a python script use the load function. You can supply a key if you do not
# want to load the entire space. By default the space is loaded entirely.
-space = BINoculars.load('test.hdf5')
+space = binoculars.load('test.hdf5')
# if you quickly want to see what the content of the space is you can print the space. This will provide information about the
# dimension, the labels, and the range of the space, but not of the data in the space.
@@ -25,19 +25,19 @@ data = space.get_masked()
grid = space.get_grid()
# you can add two spaces provided they have the same labels and the same resolution. The range of the space can be arbitrary.
-total = BINoculars.load('test.hdf5') + BINoculars.load('test1.hdf5')
+total = binoculars.load('test.hdf5') + binoculars.load('test1.hdf5')
# you can view the configuration settings used to create the space.
-BINoculars.info(space)
+binoculars.info(space)
# if you now want to reuse this configuration file as an input you can extract the configuration file by
space.config.totxtfile('config.txt')
# You can save the space in another format by changing the extension, currently only txt and hdf5 supported, and EDF if you have PyMca installed
-BINoculars.save('test.txt', space)
+binoculars.save('test.txt', space)
-# you can plot a space in a python script, or in an interactive terminal using the BINoculars.plotspace function. This function
-# automatically puts the right coordinates on the axes. Check the advanced options by typing 'help(BINoculars.plotspace)'
+# you can plot a space in a python script, or in an interactive terminal using the binoculars.plotspace function. This function
+# automatically puts the right coordinates on the axes. Check the advanced options by typing 'help(binoculars.plotspace)'
import matplotlib.pyplot as pyplot
-BINoculars.plotspace(specular)
+binoculars.plotspace(specular)
pyplot.show()
diff --git a/examples/scripts/demo_fit.py b/examples/scripts/demo_fit.py
index 77abe2b..daaaa70 100644
--- a/examples/scripts/demo_fit.py
+++ b/examples/scripts/demo_fit.py
@@ -1,19 +1,19 @@
import numpy
import matplotlib.pyplot as pyplot
-import BINoculars
-import BINoculars.space
+import binoculars
+import binoculars.space
-space = BINoculars.load('test.hdf5').slice('delta', slice(-0.035, 0.035)).project('delta').slice('g-m', slice(None, 0.4))
+space = binoculars.load('test.hdf5').slice('delta', slice(-0.035, 0.035)).project('delta').slice('g-m', slice(None, 0.4))
results = []
-x = BINoculars.space.get_axis_values(space, 'g+m')
+x = binoculars.space.get_axis_values(space, 'g+m')
-for index, curve in enumerate(BINoculars.space.iterate_over_axis(space, 'g+m')):
+for index, curve in enumerate(binoculars.space.iterate_over_axis(space, 'g+m')):
try:
- fit = BINoculars.fitspace(curve, 'lorentzian')
+ fit = binoculars.fitspace(curve, 'lorentzian')
results.append(numpy.append(x[index], fit.result))
#pyplot.figure()
- #BINoculars.plotspace(curve, fit = fit.fitdata, log = False)
+ #binoculars.plotspace(curve, fit = fit.fitdata, log = False)
#pyplot.savefig('fit_{0}'.format(index))
#pyplot.close()
except Exception as e: