Update upstream source from tag 'upstream/0.0.11'

Update to upstream version '0.0.11'
with Debian dir d87aa35592df6407b463ca4678bbe7b055ea3c4c

11 files changed, 22 insertions, 14 deletions

diff --git a/README.md b/README.md
index e4b986a..ed8288d 100644
--- a/README.md
+++ b/README.md
@@ -14,10 +14,13 @@ Grab the [latest sourcecode as zip](https://github.com/id03/binoculars/archive/m
 
 The [BINoculars wiki](https://github.com/id03/binoculars/wiki) contains a detailed tutorial to get started.
 
+## Local usage from sources folder
+
+`PYTHONPATH=<absolute path to binoculars sources directory>  <absolute path to the scripts folder>/<script_name>`
 
 ## Scripting
 
-If you want more complex operations than offered by the command line or GUI tools, you can manipulate BINoculars data directly from Python. Some examples with detailed comments can be found in the [repository](https://github.com/id03/binoculars/tree/master/examples/scripts). The API documentation on the `binoculars` and `binoculars.space` modules can be accessed via pydoc, e.g. run `pydoc -w binoculars binoculars.space` to generate HTML files. 
+If you want more complex operations than offered by the command line or GUI tools, you can manipulate BINoculars data directly from Python. Some examples with detailed comments can be found in the [repository](https://github.com/id03/binoculars/tree/master/examples/scripts). The API documentation on the `binoculars` and `binoculars.space` modules can be accessed via pydoc, e.g. run `pydoc -w binoculars binoculars.space` to generate HTML files.
 
 
 ## Extending BINoculars
diff --git a/binoculars/space.py b/binoculars/space.py
index 3a60d1f..84d28b8 100755
--- a/binoculars/space.py
+++ b/binoculars/space.py
@@ -124,7 +124,7 @@ class Axis(object):
             if value.stop is None:
                 stop = None
             else:
-                stop = self._get_index_float(value.stop)
+                stop = self._get_index_float(value.stop) + 1
             if start is not None and stop is not None and start > stop:
                 start, stop = stop, start
             return slice(start, stop)
diff --git a/scripts/D2Dview.py b/scripts/D2Dview.py
index a776968..a0d6cec 100644
--- a/scripts/D2Dview.py
+++ b/scripts/D2Dview.py
@@ -1,4 +1,5 @@
 # -*- coding: utf-8 -*-
+#!/usr/bin/env python3
 """
 Created on Fri Dec 12 13:42:19 2014
 
diff --git a/scripts/binoculars b/scripts/binoculars
index 067229b..ddb6fdf 100755
--- a/scripts/binoculars
+++ b/scripts/binoculars
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python3
 
 import sys
 import os
diff --git a/scripts/binoculars-fitaid b/scripts/binoculars-fitaid
index 968d924..4032d0c 100755
--- a/scripts/binoculars-fitaid
+++ b/scripts/binoculars-fitaid
@@ -1,4 +1,4 @@
-#!/usr/bin/python3
+#!/usr/bin/env python3
 
 # TODO: export des fit en ascii should be versionned.
 
diff --git a/scripts/binoculars-gui b/scripts/binoculars-gui
index a0f69bd..770fb03 100755
--- a/scripts/binoculars-gui
+++ b/scripts/binoculars-gui
@@ -1,4 +1,4 @@
-#!/usr/bin/python3
+#!/usr/bin/env python3
 from __future__ import unicode_literals
 
 import sys
@@ -1035,7 +1035,7 @@ class TableWidget(QWidget):
 
         self.table = QTableWidget(0, 4)
         self.table.setHorizontalHeaderLabels(['', 'filename','labels', 'remove'])
-        
+
         for index, width in enumerate([25,150,50,70]):
             self.table.setColumnWidth(index, width)
 
@@ -1145,7 +1145,7 @@ class LimitWidget(QWidget):
         self.refreshbutton.clicked.connect(self.refresh)
 
         vbox.addWidget(self.projectionlabel)
-       
+
         self.checkbox = list()
         self.state = list()
 
@@ -1155,16 +1155,16 @@ class LimitWidget(QWidget):
             self.state.append(box.checkState())
             hbox.addWidget(box)
             box.stateChanged.connect(self.update_checkbox)
-        
+
         self.state = numpy.array(self.state, dtype = numpy.bool)
         self.init_checkbox()
 
         vbox.addLayout(hbox)
-        
+
         for label in labels:
             self.qlabels.append(QLabel(self))
             self.leftindicator.append(QLineEdit(self))
-            self.rightindicator.append(QLineEdit(self))             
+            self.rightindicator.append(QLineEdit(self))
             self.sliders.append(RangeSlider(Qt.Horizontal))
 
         for index, label in enumerate(labels):
@@ -1235,7 +1235,7 @@ class LimitWidget(QWidget):
         signal['project'] = project
         signal['key'] = key
         self.keydict.emit(signal)
-            
+
     def update_sliders_left(self):
         for ax, left, right , slider in zip(self.axes, self.leftindicator, self.rightindicator, self.sliders):
             try:
diff --git a/scripts/binoculars-processgui b/scripts/binoculars-processgui
index 72b9357..b55ba1f 100755
--- a/scripts/binoculars-processgui
+++ b/scripts/binoculars-processgui
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python3
 """
 binoculars gui for data processing
 Created on 2015-06-04
diff --git a/scripts/binoculars-server b/scripts/binoculars-server
index 354a899..c3b82cf 100755
--- a/scripts/binoculars-server
+++ b/scripts/binoculars-server
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python3
 '''Serverqueue where jobs can be submitted. Jobs will be calculated on
 the spot or passed on to the OAR cluster if so specified in the
 configfile. Jobs can be submitted in a json dictionary. The keyword
diff --git a/scripts/binoviewer.py b/scripts/binoviewer.py
index 5d8225b..b465dab 100644
--- a/scripts/binoviewer.py
+++ b/scripts/binoviewer.py
@@ -1,3 +1,4 @@
+#!/usr/bin/env python3
 """
 Created on Wed Dec 07 11:10:28 2016
 
@@ -10,7 +11,7 @@ Created on Wed Dec 07 11:10:28 2016
 
 # -*- coding: utf-8 -*-
 #
-# Copyright © 2009-2011, 2020 CEA
+# Copyright © 2009-2011, 2020, 2021 CEA
 # Pierre Raybaut
 # Licensed under the terms of the CECILL License
 # (see guiqwt/__init__.py for details)
diff --git a/scripts/grafit2.py b/scripts/grafit2.py
index 0a3d984..4b4e382 100644
--- a/scripts/grafit2.py
+++ b/scripts/grafit2.py
@@ -1,4 +1,5 @@
 # -*- coding: utf-8 -*-
+#!/usr/bin/env python3
 """
 Created on Fri Dec 06 12:15:46 2013
 
diff --git a/scripts/nxsViewer.py b/scripts/nxsViewer.py
index 2029965..1eb056d 100644
--- a/scripts/nxsViewer.py
+++ b/scripts/nxsViewer.py
@@ -1,4 +1,6 @@
 # -*- coding: utf-8 -*-
+#!/usr/bin/env python3
+
 """
 Created on Tue Oct 08 10:39:12 2013