/* * Copyright 2011, Ben Langmead * * This file is part of Bowtie 2. * * Bowtie 2 is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * Bowtie 2 is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Bowtie 2. If not, see . */ // For holding index data #define EBWT_CAT ((int) 1) // For holding index-building data #define EBWTB_CAT ((int) 2) // For holding cache data #define CA_CAT ((int) 3) // For holding group-walk-left bookkeeping data #define GW_CAT ((int) 4) // For holding alignment bookkeeping data #define AL_CAT ((int) 5) // For holding dynamic programming bookkeeping data #define DP_CAT ((int) 6) // For holding alignment results and other hit objects #define RES_CAT ((int) 7) #define MISC_CAT ((int) 9) #define DEBUG_CAT ((int)10)