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+package de.lmu.ifi.dbs.elki.algorithm.clustering.gdbscan;
+
+/*
+ This file is part of ELKI:
+ Environment for Developing KDD-Applications Supported by Index-Structures
+
+ Copyright (C) 2014
+ Ludwig-Maximilians-Universität München
+ Lehr- und Forschungseinheit für Datenbanksysteme
+ ELKI Development Team
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Affero General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU Affero General Public License for more details.
+
+ You should have received a copy of the GNU Affero General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+import de.lmu.ifi.dbs.elki.algorithm.DistanceBasedAlgorithm;
+import de.lmu.ifi.dbs.elki.algorithm.clustering.DBSCAN;
+import de.lmu.ifi.dbs.elki.data.type.TypeInformation;
+import de.lmu.ifi.dbs.elki.database.datastore.DataStore;
+import de.lmu.ifi.dbs.elki.database.datastore.DataStoreFactory;
+import de.lmu.ifi.dbs.elki.database.datastore.DataStoreUtil;
+import de.lmu.ifi.dbs.elki.database.datastore.WritableDataStore;
+import de.lmu.ifi.dbs.elki.database.ids.DBIDIter;
+import de.lmu.ifi.dbs.elki.database.ids.DBIDRef;
+import de.lmu.ifi.dbs.elki.database.ids.DBIDs;
+import de.lmu.ifi.dbs.elki.database.ids.DoubleDBIDList;
+import de.lmu.ifi.dbs.elki.database.query.range.RangeQuery;
+import de.lmu.ifi.dbs.elki.database.relation.Relation;
+import de.lmu.ifi.dbs.elki.distance.distancefunction.DistanceFunction;
+import de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski.EuclideanDistanceFunction;
+import de.lmu.ifi.dbs.elki.logging.Logging;
+import de.lmu.ifi.dbs.elki.logging.progress.FiniteProgress;
+import de.lmu.ifi.dbs.elki.logging.statistics.Duration;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.Parameterization;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.DoubleParameter;
+import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ObjectParameter;
+
+/**
+ * Abstract local model neighborhood predicate.
+ *
+ * @author Erich Schubert
+ *
+ * @apiviz.has Instance
+ *
+ * @param <O> object type
+ * @param <M> model type
+ */
+public abstract class AbstractRangeQueryNeighborPredicate<O, M> implements NeighborPredicate {
+ /**
+ * Range to query with.
+ */
+ protected double epsilon;
+
+ /**
+ * Distance function to use.
+ */
+ protected DistanceFunction<? super O> distFunc;
+
+ /**
+ * Full constructor.
+ *
+ * @param epsilon Epsilon value
+ * @param distFunc Distance function to use
+ */
+ public AbstractRangeQueryNeighborPredicate(double epsilon, DistanceFunction<? super O> distFunc) {
+ super();
+ this.epsilon = epsilon;
+ this.distFunc = distFunc;
+ }
+
+ @Override
+ public TypeInformation getInputTypeRestriction() {
+ return distFunc.getInputTypeRestriction();
+ }
+
+ /**
+ * Perform the preprocessing step.
+ *
+ * @param modelcls Class of models
+ * @param relation Data relation
+ * @param query Range query
+ * @return Precomputed models
+ */
+ public DataStore<M> preprocess(Class<? super M> modelcls, Relation<O> relation, RangeQuery<O> query) {
+ WritableDataStore<M> storage = DataStoreUtil.makeStorage(relation.getDBIDs(), DataStoreFactory.HINT_HOT | DataStoreFactory.HINT_TEMP, modelcls);
+
+ Duration time = getLogger().newDuration(this.getClass().getName() + ".preprocessing-time").begin();
+ FiniteProgress progress = getLogger().isVerbose() ? new FiniteProgress(this.getClass().getName(), relation.size(), getLogger()) : null;
+ for(DBIDIter iditer = relation.iterDBIDs(); iditer.valid(); iditer.advance()) {
+ DoubleDBIDList neighbors = query.getRangeForDBID(iditer, epsilon);
+ storage.put(iditer, computeLocalModel(iditer, neighbors, relation));
+ getLogger().incrementProcessed(progress);
+ }
+ getLogger().ensureCompleted(progress);
+ getLogger().statistics(time.end());
+ return storage;
+ }
+
+ /**
+ * Method to compute the actual data model.
+ *
+ * @param id Object ID
+ * @param neighbors Neighbors
+ * @param relation Data relation
+ * @return Model for this object.
+ */
+ abstract protected M computeLocalModel(DBIDRef id, DoubleDBIDList neighbors, Relation<O> relation);
+
+ /**
+ * Get the class logger.
+ *
+ * @return Logger
+ */
+ abstract Logging getLogger();
+
+ /**
+ * Instance for a particular data set.
+ *
+ * @author Erich Schubert
+ *
+ * @param <N> Neighborhood type
+ * @param <M> model type
+ */
+ public abstract static class Instance<N, M> implements NeighborPredicate.Instance<N> {
+ /**
+ * DBIDs to process
+ */
+ protected DBIDs ids;
+
+ /**
+ * Model storage.
+ */
+ protected DataStore<M> storage;
+
+ /**
+ * Constructor.
+ *
+ * @param ids DBIDs to process
+ * @param storage Model storage
+ */
+ public Instance(DBIDs ids, DataStore<M> storage) {
+ super();
+ this.ids = ids;
+ this.storage = storage;
+ }
+
+ @Override
+ public DBIDs getIDs() {
+ return ids;
+ }
+ }
+
+ /**
+ * Parameterization class
+ *
+ * @author Erich Schubert
+ *
+ * @apiviz.exclude
+ *
+ * @param <O> object type
+ */
+ public abstract static class Parameterizer<O> extends AbstractParameterizer {
+ /**
+ * Range to query with
+ */
+ double epsilon;
+
+ /**
+ * Distance function to use
+ */
+ DistanceFunction<O> distfun = null;
+
+ @Override
+ protected void makeOptions(Parameterization config) {
+ super.makeOptions(config);
+ configDistance(config);
+ configEpsilon(config);
+ }
+
+ /**
+ * Configure the distance parameter.
+ *
+ * @param config Parameter source
+ */
+ protected void configDistance(Parameterization config) {
+ // Get a distance function.
+ ObjectParameter<DistanceFunction<O>> distanceP = new ObjectParameter<>(DistanceBasedAlgorithm.DISTANCE_FUNCTION_ID, DistanceFunction.class, EuclideanDistanceFunction.class);
+ if(config.grab(distanceP)) {
+ distfun = distanceP.instantiateClass(config);
+ }
+ }
+
+ /**
+ * Configure the epsilon parameter.
+ *
+ * @param config Parameter source
+ */
+ protected void configEpsilon(Parameterization config) {
+ // Get the epsilon parameter
+ DoubleParameter epsilonP = new DoubleParameter(DBSCAN.Parameterizer.EPSILON_ID);
+ if(config.grab(epsilonP)) {
+ epsilon = epsilonP.getValue();
+ }
+ }
+ }
+}