diff options
Diffstat (limited to 'src/de/lmu/ifi/dbs/elki/distance/distancefunction/correlation/AbsolutePearsonCorrelationDistanceFunction.java')
-rw-r--r-- | src/de/lmu/ifi/dbs/elki/distance/distancefunction/correlation/AbsolutePearsonCorrelationDistanceFunction.java | 104 |
1 files changed, 104 insertions, 0 deletions
diff --git a/src/de/lmu/ifi/dbs/elki/distance/distancefunction/correlation/AbsolutePearsonCorrelationDistanceFunction.java b/src/de/lmu/ifi/dbs/elki/distance/distancefunction/correlation/AbsolutePearsonCorrelationDistanceFunction.java new file mode 100644 index 00000000..b7d208df --- /dev/null +++ b/src/de/lmu/ifi/dbs/elki/distance/distancefunction/correlation/AbsolutePearsonCorrelationDistanceFunction.java @@ -0,0 +1,104 @@ +package de.lmu.ifi.dbs.elki.distance.distancefunction.correlation; + +/* + This file is part of ELKI: + Environment for Developing KDD-Applications Supported by Index-Structures + + Copyright (C) 2014 + Ludwig-Maximilians-Universität München + Lehr- und Forschungseinheit für Datenbanksysteme + ELKI Development Team + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU Affero General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU Affero General Public License for more details. + + You should have received a copy of the GNU Affero General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + */ + +import de.lmu.ifi.dbs.elki.data.NumberVector; +import de.lmu.ifi.dbs.elki.distance.distancefunction.AbstractNumberVectorDistanceFunction; +import de.lmu.ifi.dbs.elki.math.MathUtil; +import de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer; + +/** + * Absolute Pearson correlation distance function for feature vectors. + * + * The absolute Pearson correlation distance is computed from the Pearson + * correlation coefficient <code>r</code> as: <code>1-abs(r)</code>. + * + * The distance between two vectors will be low (near 0), if their attribute + * values are dimension-wise strictly positively or negatively correlated, it + * will be high (near 1), if their attribute values are dimension-wise + * uncorrelated. + * + * @author Erich Schubert + */ +public class AbsolutePearsonCorrelationDistanceFunction extends AbstractNumberVectorDistanceFunction { + /** + * Static instance. + */ + public static final AbsolutePearsonCorrelationDistanceFunction STATIC = new AbsolutePearsonCorrelationDistanceFunction(); + + /** + * Constructor - use {@link #STATIC} instead. + * + * @deprecated Use static instance! + */ + @Deprecated + public AbsolutePearsonCorrelationDistanceFunction() { + super(); + } + + /** + * Computes the absolute Pearson correlation distance for two given feature + * vectors. + * + * The absolute Pearson correlation distance is computed from the Pearson + * correlation coefficient <code>r</code> as: <code>1-abs(r)</code>. Hence, + * possible values of this distance are between 0 and 1. + * + * @param v1 first feature vector + * @param v2 second feature vector + * @return the absolute Pearson correlation distance for two given feature + * vectors v1 and v2 + */ + @Override + public double distance(NumberVector v1, NumberVector v2) { + return 1 - Math.abs(MathUtil.pearsonCorrelationCoefficient(v1, v2)); + } + + @Override + public String toString() { + return "AbsolutePearsonCorrelationDistance"; + } + + @Override + public boolean equals(Object obj) { + if(obj == null) { + return false; + } + return this.getClass().equals(obj.getClass()); + } + + /** + * Parameterization class. + * + * @author Erich Schubert + * + * @apiviz.exclude + */ + public static class Parameterizer extends AbstractParameterizer { + @Override + protected AbsolutePearsonCorrelationDistanceFunction makeInstance() { + return AbsolutePearsonCorrelationDistanceFunction.STATIC; + } + } +}
\ No newline at end of file |