package de.lmu.ifi.dbs.elki.algorithm.statistics; /* This file is part of ELKI: Environment for Developing KDD-Applications Supported by Index-Structures Copyright (C) 2015 Ludwig-Maximilians-Universität München Lehr- und Forschungseinheit für Datenbanksysteme ELKI Development Team This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. You should have received a copy of the GNU Affero General Public License along with this program. If not, see . */ import de.lmu.ifi.dbs.elki.algorithm.Algorithm; import de.lmu.ifi.dbs.elki.data.NumberVector; import de.lmu.ifi.dbs.elki.data.type.TypeInformation; import de.lmu.ifi.dbs.elki.data.type.TypeUtil; import de.lmu.ifi.dbs.elki.database.Database; import de.lmu.ifi.dbs.elki.database.ids.DBIDIter; import de.lmu.ifi.dbs.elki.database.relation.Relation; import de.lmu.ifi.dbs.elki.database.relation.RelationUtil; import de.lmu.ifi.dbs.elki.math.DoubleMinMax; import de.lmu.ifi.dbs.elki.math.scales.LinearScale; import de.lmu.ifi.dbs.elki.result.Result; import de.lmu.ifi.dbs.elki.result.ResultUtil; import de.lmu.ifi.dbs.elki.result.ScalesResult; import de.lmu.ifi.dbs.elki.utilities.documentation.Description; import de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer; import de.lmu.ifi.dbs.elki.utilities.optionhandling.OptionID; import de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.ListSizeConstraint; import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.Parameterization; import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.DoubleListParameter; /** * Pseudo "algorithm" that computes the global min/max for a relation across all * attributes. * * FIXME: this should become part of relation metadata. * * @author Erich Schubert * @since 0.5.0 */ @Description("Setup a scaling so that all dimensions are scaled equally in visualization.") public class AddSingleScale implements Algorithm { /** * Minimum and maximum to use. */ double[] minmax = null; /** * Constructor. * * @param minmax Minimum and maximum values */ public AddSingleScale(double[] minmax) { super(); this.minmax = minmax; } @SuppressWarnings("unchecked") @Override public Result run(Database database) { for(Relation rel : database.getRelations()) { if(TypeUtil.NUMBER_VECTOR_FIELD.isAssignableFromType(rel.getDataTypeInformation())) { ScalesResult res = run((Relation) rel); ResultUtil.addChildResult(rel, res); } } return null; } /** * Add scales to a single vector relation. * * @param rel Relation * @return Scales */ private ScalesResult run(Relation rel) { final int dim = RelationUtil.dimensionality(rel); LinearScale[] scales = new LinearScale[dim]; if(minmax == null) { DoubleMinMax mm = new DoubleMinMax(); for(DBIDIter iditer = rel.iterDBIDs(); iditer.valid(); iditer.advance()) { NumberVector vec = rel.get(iditer); for(int d = 0; d < dim; d++) { final double val = vec.doubleValue(d); if(val != val) { continue; // NaN } mm.put(val); } } LinearScale scale = new LinearScale(mm.getMin(), mm.getMax()); for(int i = 0; i < dim; i++) { scales[i] = scale; } } else { // Use predefined. LinearScale scale = new LinearScale(minmax[0], minmax[1]); for(int i = 0; i < dim; i++) { scales[i] = scale; } } ScalesResult res = new ScalesResult(scales); return res; } @Override public TypeInformation[] getInputTypeRestriction() { return TypeUtil.array(TypeUtil.NUMBER_VECTOR_FIELD); } /** * Parameterization class. * * @author Erich Schubert * * @apiviz.exclude */ public static class Parameterizer extends AbstractParameterizer { /** * Minimum and maximum values. */ public static final OptionID MINMAX_ID = new OptionID("scales.minmax", "Forcibly set the scales to the given range."); /** * Minimum and maximum to use. */ double[] minmax = null; @Override protected void makeOptions(Parameterization config) { super.makeOptions(config); DoubleListParameter minmaxP = new DoubleListParameter(MINMAX_ID) // .setOptional(true) // .addConstraint(new ListSizeConstraint(2)); if(config.grab(minmaxP)) { minmax = minmaxP.getValue().clone(); } } @Override protected AddSingleScale makeInstance() { return new AddSingleScale(minmax); } } }