package de.lmu.ifi.dbs.elki.datasource.parser; /* This file is part of ELKI: Environment for Developing KDD-Applications Supported by Index-Structures Copyright (C) 2015 Ludwig-Maximilians-Universität München Lehr- und Forschungseinheit für Datenbanksysteme ELKI Development Team This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. You should have received a copy of the GNU Affero General Public License along with this program. If not, see . */ import gnu.trove.list.array.TLongArrayList; import de.lmu.ifi.dbs.elki.data.BitVector; import de.lmu.ifi.dbs.elki.data.LabelList; import de.lmu.ifi.dbs.elki.logging.Logging; import de.lmu.ifi.dbs.elki.utilities.documentation.Description; import de.lmu.ifi.dbs.elki.utilities.documentation.Title; /** * Parser for parsing one BitVector per line, bits separated by whitespace. *

* Several labels may be given per BitVector. A label must not be parseable as * Bit. Lines starting with "#" will be ignored. * * @author Arthur Zimek * * @apiviz.has BitVector */ @Title("Bit Vector Label Parser") @Description("Parses the following format of lines:\n" + // "A single line provides a single BitVector. Bits are separated by whitespace. " + // "Any substring not containing whitespace is tried to be read as Bit. " + // "If this fails, it will be appended to a label. " + // "(Thus, any label must not be parseable as Bit.) " + // "Empty lines and lines beginning with \"#\" will be ignored.") public class BitVectorLabelParser extends NumberVectorLabelParser implements Parser { /** * Class logger */ private static final Logging LOG = Logging.getLogger(BitVectorLabelParser.class); /** * Buffer, will be reused. */ TLongArrayList buf = new TLongArrayList(); /** * Constructor. * * @param format Input format */ public BitVectorLabelParser(CSVReaderFormat format) { super(format, null, BitVector.FACTORY); } @Override protected boolean parseLineInternal() { int curdim = 0; for(; tokenizer.valid(); tokenizer.advance()) { try { final int word = curdim >>> 6; final int off = curdim & 0x3F; if(word >= buf.size()) { // Ensure size. buf.add(0L); } if(tokenizer.getLongBase10() > 0) { buf.set(word, buf.get(word) | (1L << off)); } ++curdim; } catch(NumberFormatException e) { labels.add(tokenizer.getSubstring()); } } if(curdim == 0) { // Maybe a label row return false; } curvec = new BitVector(buf.toArray(), curdim); curlbl = LabelList.make(labels); buf.clear(); labels.clear(); return true; } @Override protected Logging getLogger() { return LOG; } /** * Parameterization class. * * @author Erich Schubert * * @apiviz.exclude */ public static class Parameterizer extends AbstractStreamingParser.Parameterizer { @Override protected BitVectorLabelParser makeInstance() { return new BitVectorLabelParser(format); } } }