package de.lmu.ifi.dbs.elki.distance.similarityfunction.kernel; /* This file is part of ELKI: Environment for Developing KDD-Applications Supported by Index-Structures Copyright (C) 2013 Ludwig-Maximilians-Universität München Lehr- und Forschungseinheit für Datenbanksysteme ELKI Development Team This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. You should have received a copy of the GNU Affero General Public License along with this program. If not, see . */ import de.lmu.ifi.dbs.elki.data.NumberVector; import de.lmu.ifi.dbs.elki.distance.distancefunction.AbstractVectorDoubleDistanceFunction; import de.lmu.ifi.dbs.elki.distance.similarityfunction.AbstractVectorDoubleSimilarityFunction; import de.lmu.ifi.dbs.elki.utilities.Alias; import de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer; import de.lmu.ifi.dbs.elki.utilities.optionhandling.OptionID; import de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.CommonConstraints; import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.Parameterization; import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.DoubleParameter; /** * Provides the Gaussian radial basis function kernel (RBF Kernel). * * @author Erich Schubert */ @Alias({ "rbf" }) public class RadialBasisFunctionKernelFunction extends AbstractVectorDoubleSimilarityFunction { /** * Scaling factor gamma. (= - 1/(2sigma^2)) */ private final double gamma; /** * Constructor. * * @param sigma Scaling parameter sigma */ public RadialBasisFunctionKernelFunction(double sigma) { super(); this.gamma = -.5 / (sigma * sigma); } @Override public double doubleSimilarity(NumberVector o1, NumberVector o2) { final int dim = AbstractVectorDoubleDistanceFunction.dimensionality(o1, o2); double sim = 0.; for(int i = 0; i < dim; i++) { final double v = o1.doubleValue(i) - o2.doubleValue(i); sim += v * v; } return Math.exp(gamma * sim); } /** * Parameterization class. * * @author Erich Schubert * * @apiviz.exclude */ public static class Parameterizer extends AbstractParameterizer { /** * Sigma parameter: standard deviation. */ public static final OptionID SIGMA_ID = new OptionID("kernel.rbf.sigma", "Standard deviation of the Gaussian RBF kernel."); /** * Sigma parameter */ protected double sigma = 1.; @Override protected void makeOptions(Parameterization config) { super.makeOptions(config); final DoubleParameter sigmaP = new DoubleParameter(SIGMA_ID, 1.); sigmaP.addConstraint(CommonConstraints.GREATER_THAN_ZERO_DOUBLE); if(config.grab(sigmaP)) { sigma = sigmaP.doubleValue(); } } @Override protected RadialBasisFunctionKernelFunction makeInstance() { return new RadialBasisFunctionKernelFunction(sigma); } } }