package de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants; /* This file is part of ELKI: Environment for Developing KDD-Applications Supported by Index-Structures Copyright (C) 2011 Ludwig-Maximilians-Universität München Lehr- und Forschungseinheit für Datenbanksysteme ELKI Development Team This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. You should have received a copy of the GNU Affero General Public License along with this program. If not, see . */ import java.io.IOException; import java.io.ObjectInput; import java.io.ObjectOutput; import java.util.logging.Logger; import de.lmu.ifi.dbs.elki.data.HyperBoundingBox; import de.lmu.ifi.dbs.elki.data.spatial.SpatialComparable; import de.lmu.ifi.dbs.elki.data.spatial.SpatialUtil; import de.lmu.ifi.dbs.elki.distance.distancevalue.Distance; import de.lmu.ifi.dbs.elki.index.tree.AbstractNode; import de.lmu.ifi.dbs.elki.index.tree.DistanceEntry; import de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialDirectoryEntry; import de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialEntry; import de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialNode; import de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialPointLeafEntry; import de.lmu.ifi.dbs.elki.logging.LoggingConfiguration; /** * Abstract superclass for nodes in a R*-Tree. * * @author Elke Achtert * @param Node type * @param Entry type */ public abstract class AbstractRStarTreeNode, E extends SpatialEntry> extends AbstractNode implements SpatialNode { /** * Empty constructor for Externalizable interface. */ public AbstractRStarTreeNode() { super(); } /** * Creates a new AbstractRStarTreeNode with the specified parameters. * * @param capacity the capacity (maximum number of entries plus 1 for * overflow) of this node * @param isLeaf indicates whether this node is a leaf node * @param eclass Entry class, to initialize array storage */ public AbstractRStarTreeNode(int capacity, boolean isLeaf, Class eclass) { super(capacity, isLeaf, eclass); } @Override public double getMin(int dimension) { double min = getEntry(0).getMin(dimension); for(int i = 1; i < getNumEntries(); i++) { min = Math.min(min, getEntry(i).getMin(dimension)); } return min; } @Override public double getMax(int dimension) { double max = getEntry(0).getMax(dimension); for(int i = 1; i < getNumEntries(); i++) { max = Math.min(max, getEntry(i).getMax(dimension)); } return max; } /** * Recomputing the MBR is rather expensive. * * @return MBR */ public HyperBoundingBox computeMBR() { E firstEntry = getEntry(0); if(firstEntry == null) { return null; } int dim = firstEntry.getDimensionality(); // Note: we deliberately get a cloned copy here, since we will modify it. double[] min = SpatialUtil.getMin(firstEntry); double[] max = SpatialUtil.getMax(firstEntry); for(int i = 1; i < getNumEntries(); i++) { SpatialComparable mbr = getEntry(i); for(int d = 1; d <= dim; d++) { if(min[d - 1] > mbr.getMin(d)) { min[d - 1] = mbr.getMin(d); } if(max[d - 1] < mbr.getMax(d)) { max[d - 1] = mbr.getMax(d); } } } return new HyperBoundingBox(min, max); } @Override public int getDimensionality() { return getEntry(0).getDimensionality(); } /** * Adjusts the parameters of the entry representing this node. * * @param entry the entry representing this node */ public void adjustEntry(E entry) { ((SpatialDirectoryEntry)entry).setMBR(computeMBR()); } /** * Adjusts the parameters of the entry representing this node. Only applicable * if one object was inserted or the size of an existing node increased. * * @param entry the entry representing this node * @param responsibleMBR the MBR of the object or node which is responsible * for the call of the method * @return the MBR of the new Node */ public E adjustEntryIncremental(E entry, SpatialComparable responsibleMBR) { ((SpatialDirectoryEntry)entry).setMBR(SpatialUtil.union(entry, responsibleMBR)); return entry; } /** * * Initializes a reinsert operation. Deletes all entries in this node and * adds all entries from start index on to this node's children. * * @param start the start index of the entries that will be reinserted * @param reInsertEntries the array of entries to be reinserted */ protected > void initReInsert(int start, DistanceEntry[] reInsertEntries) { deleteAllEntries(); if(isLeaf()) { for(int i = start; i < reInsertEntries.length; i++) { addLeafEntry(reInsertEntries[i].getEntry()); } } else { for(int i = start; i < reInsertEntries.length; i++) { addDirectoryEntry(reInsertEntries[i].getEntry()); } } } /** * Tests this node (for debugging purposes). */ @SuppressWarnings("unchecked") public final void integrityCheck(AbstractRStarTree tree) { // leaf node if(isLeaf()) { for(int i = 0; i < getCapacity(); i++) { E e = getEntry(i); if(i < getNumEntries() && e == null) { throw new RuntimeException("i < numEntries && entry == null"); } if(i >= getNumEntries() && e != null) { throw new RuntimeException("i >= numEntries && entry != null"); } } } // dir node else { N tmp = tree.getNode(getEntry(0)); boolean childIsLeaf = tmp.isLeaf(); for(int i = 0; i < getCapacity(); i++) { E e = getEntry(i); if(i < getNumEntries() && e == null) { throw new RuntimeException("i < numEntries && entry == null"); } if(i >= getNumEntries() && e != null) { throw new RuntimeException("i >= numEntries && entry != null"); } if(e != null) { N node = tree.getNode(e); if(childIsLeaf && !node.isLeaf()) { for(int k = 0; k < getNumEntries(); k++) { tree.getNode(getEntry(k)); } throw new RuntimeException("Wrong Child in " + this + " at " + i); } if(!childIsLeaf && node.isLeaf()) { throw new RuntimeException("Wrong Child: child id no leaf, but node is leaf!"); } node.integrityCheckParameters((N) this, i); node.integrityCheck(tree); } } if(LoggingConfiguration.DEBUG) { Logger.getLogger(this.getClass().getName()).fine("DirNode " + getPageID() + " ok!"); } } } /** * Tests, if the parameters of the entry representing this node, are correctly * set. Subclasses may need to overwrite this method. * * @param parent the parent holding the entry representing this node * @param index the index of the entry in the parents child array */ protected void integrityCheckParameters(N parent, int index) { // test if mbr is correctly set E entry = parent.getEntry(index); HyperBoundingBox mbr = computeMBR(); if(/* entry.getMBR() == null && */mbr == null) { return; } if(!SpatialUtil.equals(entry, mbr)) { String soll = mbr.toString(); String ist = new HyperBoundingBox(entry).toString(); throw new RuntimeException("Wrong MBR in node " + parent.getPageID() + " at index " + index + " (child " + entry + ")" + "\nsoll: " + soll + ",\n ist: " + ist); } } /** * Calls the super method and writes the id of this node, the numEntries and * the entries array to the specified stream. */ @Override public void writeExternal(ObjectOutput out) throws IOException { super.writeExternal(out); // TODO: do we need to write/read the capacity? out.writeInt(entries.length); for(E entry : entries) { if(entry == null) { break; } entry.writeExternal(out); } } /** * Reads the id of this node, the numEntries and the entries array from the * specified stream. * * @param in the stream to read data from in order to restore the object * @throws java.io.IOException if I/O errors occur * @throws ClassNotFoundException If the class for an object being restored * cannot be found. */ @Override @SuppressWarnings("unchecked") public void readExternal(ObjectInput in) throws IOException, ClassNotFoundException { super.readExternal(in); // TODO: do we need to write/read the capacity? final int capacity = in.readInt(); if(isLeaf()) { entries = (E[]) new SpatialPointLeafEntry[capacity]; for(int i = 0; i < numEntries; i++) { SpatialPointLeafEntry s = new SpatialPointLeafEntry(); s.readExternal(in); entries[i] = (E) s; } } else { entries = (E[]) new SpatialDirectoryEntry[capacity]; for(int i = 0; i < numEntries; i++) { SpatialDirectoryEntry s = new SpatialDirectoryEntry(); s.readExternal(in); entries[i] = (E) s; } } } }