package de.lmu.ifi.dbs.elki.utilities.scaling.outlier; /* This file is part of ELKI: Environment for Developing KDD-Applications Supported by Index-Structures Copyright (C) 2014 Ludwig-Maximilians-Universität München Lehr- und Forschungseinheit für Datenbanksysteme ELKI Development Team This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. You should have received a copy of the GNU Affero General Public License along with this program. If not, see . */ import de.lmu.ifi.dbs.elki.database.ids.DBIDIter; import de.lmu.ifi.dbs.elki.database.relation.DoubleRelation; import de.lmu.ifi.dbs.elki.math.DoubleMinMax; import de.lmu.ifi.dbs.elki.result.outlier.OutlierResult; import de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.NumberArrayAdapter; import de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer; import de.lmu.ifi.dbs.elki.utilities.optionhandling.OptionID; import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.Parameterization; import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.DoubleParameter; /** * Scaling that can map arbitrary positive values to a value in the range of * [0:1]. * * Transformation is done by taking the square root, then doing a linear linear * mapping onto 0:1 using the minimum values seen. * * @author Erich Schubert */ public class OutlierSqrtScaling implements OutlierScalingFunction { /** * Minimum and maximum values. */ protected double min, max; /** * Predefined minimum and maximum values. */ protected Double pmin = null, pmax = null; /** * Scaling factor */ protected double factor; /** * Constructor. * * @param pmin Predefined minimum * @param pmax Predefined maximum */ public OutlierSqrtScaling(Double pmin, Double pmax) { super(); this.pmin = pmin; this.pmax = pmax; } @Override public double getScaled(double value) { assert (factor != 0) : "prepare() was not run prior to using the scaling function."; if (value <= min) { return 0; } return Math.min(1, (Math.sqrt(value - min) / factor)); } @Override public void prepare(OutlierResult or) { if (pmin == null || pmax == null) { DoubleMinMax mm = new DoubleMinMax(); DoubleRelation scores = or.getScores(); for (DBIDIter id = scores.iterDBIDs(); id.valid(); id.advance()) { double val = scores.doubleValue(id); if (!Double.isInfinite(val)) { mm.put(val); } } min = (pmin == null) ? mm.getMin() : pmin; max = (pmax == null) ? mm.getMax() : pmax; } factor = Math.sqrt(max - min); } @Override public void prepare(A array, NumberArrayAdapter adapter) { if (pmin == null || pmax == null) { DoubleMinMax mm = new DoubleMinMax(); final int size = adapter.size(array); for (int i = 0; i < size; i++) { double val = adapter.getDouble(array, i); if (!Double.isInfinite(val)) { mm.put(val); } } min = (pmin == null) ? mm.getMin() : pmin; max = (pmax == null) ? mm.getMax() : pmax; } factor = Math.sqrt(max - min); } @Override public double getMin() { return 0.0; } @Override public double getMax() { return 1.0; } /** * Parameterization class. * * @author Erich Schubert * * @apiviz.exclude */ public static class Parameterizer extends AbstractParameterizer { /** * Parameter to specify the fixed minimum to use. *

* Key: {@code -sqrtscale.min} *

*/ public static final OptionID MIN_ID = new OptionID("sqrtscale.min", "Fixed minimum to use in sqrt scaling."); /** * Parameter to specify the fixed maximum to use. *

* Key: {@code -sqrtscale.max} *

*/ public static final OptionID MAX_ID = new OptionID("sqrtscale.max", "Fixed maximum to use in sqrt scaling."); /** * Predefined minimum value. */ protected double min; /** * Predefined maximum value. */ protected double max; @Override protected void makeOptions(Parameterization config) { super.makeOptions(config); DoubleParameter minP = new DoubleParameter(MIN_ID); minP.setOptional(true); if (config.grab(minP)) { min = minP.getValue(); } DoubleParameter maxP = new DoubleParameter(MAX_ID); maxP.setOptional(true); if (config.grab(maxP)) { max = maxP.getValue(); } } @Override protected OutlierSqrtScaling makeInstance() { return new OutlierSqrtScaling(min, max); } } }