package de.lmu.ifi.dbs.elki.visualization;
/*
This file is part of ELKI:
Environment for Developing KDD-Applications Supported by Index-Structures
Copyright (C) 2012
Ludwig-Maximilians-Universität München
Lehr- und Forschungseinheit für Datenbanksysteme
ELKI Development Team
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Affero General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Affero General Public License for more details.
You should have received a copy of the GNU Affero General Public License
along with this program. If not, see .
*/
import java.io.File;
import java.util.ArrayList;
import java.util.Collection;
import java.util.List;
import java.util.Random;
import java.util.regex.Pattern;
import de.lmu.ifi.dbs.elki.algorithm.AbstractDistanceBasedAlgorithm;
import de.lmu.ifi.dbs.elki.database.Database;
import de.lmu.ifi.dbs.elki.database.ids.DBIDUtil;
import de.lmu.ifi.dbs.elki.database.relation.Relation;
import de.lmu.ifi.dbs.elki.datasource.FileBasedDatabaseConnection;
import de.lmu.ifi.dbs.elki.logging.Logging;
import de.lmu.ifi.dbs.elki.result.HierarchicalResult;
import de.lmu.ifi.dbs.elki.result.Result;
import de.lmu.ifi.dbs.elki.result.ResultUtil;
import de.lmu.ifi.dbs.elki.result.SamplingResult;
import de.lmu.ifi.dbs.elki.result.SettingsResult;
import de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil;
import de.lmu.ifi.dbs.elki.utilities.InspectionUtil;
import de.lmu.ifi.dbs.elki.utilities.exceptions.AbortException;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.OptionID;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.Parameterizable;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.WrongParameterValueException;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.GreaterEqualConstraint;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.MergedParameterization;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.Parameterization;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.IntParameter;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.Parameter;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.PatternParameter;
import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.StringParameter;
import de.lmu.ifi.dbs.elki.utilities.pairs.Pair;
import de.lmu.ifi.dbs.elki.visualization.projector.ProjectorFactory;
import de.lmu.ifi.dbs.elki.visualization.style.PropertiesBasedStyleLibrary;
import de.lmu.ifi.dbs.elki.visualization.style.StyleLibrary;
import de.lmu.ifi.dbs.elki.visualization.visualizers.VisFactory;
/**
* Utility class to determine the visualizers for a result class.
*
* @author Erich Schubert
* @author Remigius Wojdanowski
*
* @apiviz.landmark
* @apiviz.has VisualizerContext oneway - - «create»
* @apiviz.uses VisFactory oneway - n «configure»
*/
public class VisualizerParameterizer implements Parameterizable {
/**
* Get a logger for this class.
*/
protected final static Logging logger = Logging.getLogger(VisualizerParameterizer.class);
/**
* Parameter to get the style properties file.
*
*
*/
public final static OptionID STYLELIB_ID = OptionID.getOrCreateOptionID("visualizer.stylesheet", "Style properties file to use");
/**
* Default pattern for visualizer enabling.
*/
public final static String DEFAULT_ENABLEVIS = "^" + Pattern.quote(VisualizerParameterizer.class.getPackage().getName()) + "\\..*";
/**
* Parameter to enable visualizers
*
*
* Key: -vis.enable
*
* Default: ELKI core
*
*/
public final static OptionID ENABLEVIS_ID = OptionID.getOrCreateOptionID("vis.enable", "Visualizers to enable by default.");
/**
* Parameter to set the sampling level
*
*
* Key: -vis.sampling
*
*/
public final static OptionID SAMPLING_ID = OptionID.getOrCreateOptionID("vis.sampling", "Maximum number of objects to visualize by default (for performance reasons).");
/**
* Style library to use.
*/
private StyleLibrary stylelib;
/**
* (Result-to-visualization) Adapters
*/
private Collection factories;
/**
* Projectors to use.
*/
private Collection projectors;
/**
* Sample size
*/
private int samplesize = -1;
/**
* Random seed for sampling.
*
* FIXME: make parameterizable.
*/
private long seed = new Random().nextLong();
/**
* Constructor.
*
* @param samplesize
* @param stylelib Style library
* @param projectors Projectors
* @param factories Factories to use
* @param hideVisualizers Visualizer hiding pattern
*/
public VisualizerParameterizer(int samplesize, StyleLibrary stylelib, Collection projectors, Collection factories, Pattern hideVisualizers) {
super();
this.samplesize = samplesize;
this.stylelib = stylelib;
this.projectors = projectors;
this.factories = factories;
}
/**
* Make a new visualization context
*
* @param result Base result
* @return New context
*/
public VisualizerContext newContext(HierarchicalResult result) {
if(samplesize > 0) {
Collection> rels = ResultUtil.filterResults(result, Relation.class);
for(Relation> rel : rels) {
if(!ResultUtil.filterResults(rel, SamplingResult.class).isEmpty()) {
continue;
}
int size = rel.size();
if(size > samplesize) {
SamplingResult sample = new SamplingResult(rel);
sample.setSample(DBIDUtil.randomSample(sample.getSample(), samplesize, seed));
ResultUtil.addChildResult(rel, sample);
}
}
}
VisualizerContext context = new VisualizerContext(result, stylelib, projectors, factories);
return context;
}
/**
* Try to automatically generate a title for this.
*
* @param db Database
* @param result Result object
* @return generated title
*/
public static String getTitle(Database db, Result result) {
List>> settings = new ArrayList>>();
for(SettingsResult sr : ResultUtil.getSettingsResults(result)) {
settings.addAll(sr.getSettings());
}
String algorithm = null;
String distance = null;
String dataset = null;
for(Pair