package de.lmu.ifi.dbs.elki.algorithm.clustering; /* This file is part of ELKI: Environment for Developing KDD-Applications Supported by Index-Structures Copyright (C) 2011 Ludwig-Maximilians-Universität München Lehr- und Forschungseinheit für Datenbanksysteme ELKI Development Team This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. You should have received a copy of the GNU Affero General Public License along with this program. If not, see . */ import org.junit.Test; import de.lmu.ifi.dbs.elki.JUnit4Test; import de.lmu.ifi.dbs.elki.algorithm.AbstractSimpleAlgorithmTest; import de.lmu.ifi.dbs.elki.data.Clustering; import de.lmu.ifi.dbs.elki.data.DoubleVector; import de.lmu.ifi.dbs.elki.data.model.Model; import de.lmu.ifi.dbs.elki.database.Database; import de.lmu.ifi.dbs.elki.index.preprocessed.snn.SharedNearestNeighborPreprocessor; import de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil; import de.lmu.ifi.dbs.elki.utilities.optionhandling.ParameterException; import de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.ListParameterization; /** * Performs a full SNNClustering run, and compares the result with a clustering * derived from the data set labels. This test ensures that SNNClustering's * performance doesn't unexpectedly drop on this data set (and also ensures that * the algorithms work, as a side effect). * * @author Katharina Rausch * @author Erich Schubert */ public class TestSNNClusteringResults extends AbstractSimpleAlgorithmTest implements JUnit4Test { /** * Run SNNClustering with fixed parameters and compare the result to a golden * standard. * * @throws ParameterException */ @Test public void testSNNClusteringResults() { Database db = makeSimpleDatabase(UNITTEST + "different-densities-2d.ascii", 1200); // Setup algorithm ListParameterization params = new ListParameterization(); params.addParameter(SNNClustering.EPSILON_ID, 77); params.addParameter(SNNClustering.MINPTS_ID, 28); params.addParameter(SharedNearestNeighborPreprocessor.Factory.NUMBER_OF_NEIGHBORS_ID, 100); SNNClustering snn = ClassGenericsUtil.parameterizeOrAbort(SNNClustering.class, params); testParameterizationOk(params); // run SNN on database Clustering result = snn.run(db); testFMeasure(db, result, 0.835000); testClusterSizes(result, new int[] { 76, 213, 219, 225, 231, 236 }); } }