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authorAaron M. Ucko <ucko@debian.org>2017-01-24 21:32:17 -0500
committerAaron M. Ucko <ucko@debian.org>2017-01-24 21:54:49 -0500
commit662ab2f05f19e3500a43f3e1c576568b1bfde210 (patch)
tree088dcce9db9867c107a61cf7c7586b507c39d6b5
parent1b21be930b8af053ba62dde788b7a6450629e1ed (diff)
Update man pages for new 6.10.2017123(+ds) release.
Add run-ncbi-converter.1 and update xtract.1.
-rw-r--r--debian/man/run-ncbi-converter.125
-rw-r--r--debian/man/xtract.16
2 files changed, 31 insertions, 0 deletions
diff --git a/debian/man/run-ncbi-converter.1 b/debian/man/run-ncbi-converter.1
new file mode 100644
index 0000000..6ef1dfa
--- /dev/null
+++ b/debian/man/run-ncbi-converter.1
@@ -0,0 +1,25 @@
+.TH RUN-NCBI-CONVERTER 1 2017-01-24 NCBI "NCBI Entrez Direct User's Manual"
+.SH NAME
+run\-ncbi\-converter \- Run a converter from NCBI's FTP site
+.SH SYNOPSIS
+\fBrun\-ncbi\-converter\fP
+\fIname\fP
+\fIarg\fP [\|...\|]
+.SH DESCRIPTION
+\fBrun\-ncbi\-converter\fP runs one of the tools from
+.UR ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/converters
+NCBI's FTP site
+.UE
+with specified arguments.
+It maintains a cache of downloaded tools in
+\fB$NCBI_CONVERTER_DIR\fP
+(\fB$HOME/.cache/ncbi\-converters\fP by default).
+.SH OPTIONS
+.TP
+\fIname\fP
+Converter to run.
+.TP
+\fIarg\fP
+Argument to supply to it.
+.SH SEE ALSO
+.BR efetch (1).
diff --git a/debian/man/xtract.1 b/debian/man/xtract.1
index 1d6fdef..caeaef3 100644
--- a/debian/man/xtract.1
+++ b/debian/man/xtract.1
@@ -60,6 +60,7 @@ xtract \- convert XML into a table of data values
[\|\fB\-words\fP\ \fIelement\fP\|]
[\|\fB\-pairs\fP\ \fIelement\fP\|]
[\|\fB\-phrase\fP\ \fIelement\fP\|]
+[\|\fB\-letters\fP\ \fIelement\fP\|]
[\|\fB\-0\-based\fP\ \fIelement\fP\|]
[\|\fB\-1\-based\fP\ \fIelement\fP\|]
[\|\fB\-ucsc\-based\fP\ \fIelement\fP\|]
@@ -304,6 +305,9 @@ Adjacent informative words.
.TP
\fB\-phrase\fP\ \fIelement\fP
Experimental index generation.
+.TP
+\fB\-letters\fP\ \fIelement\fP
+Separate individual letters.
.SS Sequence Coordinates
.TP
\fB\-0\-based\fP\ \fIelement\fP
@@ -354,6 +358,8 @@ Print after each record.
.RS
.IP \fBcompact\fP 9
Compress runs of spaces.
+.IP \fBflush\fP 9
+Suppress line indentation.
.IP \fBindent\fP 9
Indent according to nesting depth.
.IP \fBexpand\fP 9