diff options
author | Aaron M. Ucko <ucko@debian.org> | 2017-01-24 21:32:17 -0500 |
---|---|---|
committer | Aaron M. Ucko <ucko@debian.org> | 2017-01-24 21:54:49 -0500 |
commit | 662ab2f05f19e3500a43f3e1c576568b1bfde210 (patch) | |
tree | 088dcce9db9867c107a61cf7c7586b507c39d6b5 | |
parent | 1b21be930b8af053ba62dde788b7a6450629e1ed (diff) |
Update man pages for new 6.10.2017123(+ds) release.
Add run-ncbi-converter.1 and update xtract.1.
-rw-r--r-- | debian/man/run-ncbi-converter.1 | 25 | ||||
-rw-r--r-- | debian/man/xtract.1 | 6 |
2 files changed, 31 insertions, 0 deletions
diff --git a/debian/man/run-ncbi-converter.1 b/debian/man/run-ncbi-converter.1 new file mode 100644 index 0000000..6ef1dfa --- /dev/null +++ b/debian/man/run-ncbi-converter.1 @@ -0,0 +1,25 @@ +.TH RUN-NCBI-CONVERTER 1 2017-01-24 NCBI "NCBI Entrez Direct User's Manual" +.SH NAME +run\-ncbi\-converter \- Run a converter from NCBI's FTP site +.SH SYNOPSIS +\fBrun\-ncbi\-converter\fP +\fIname\fP +\fIarg\fP [\|...\|] +.SH DESCRIPTION +\fBrun\-ncbi\-converter\fP runs one of the tools from +.UR ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/converters +NCBI's FTP site +.UE +with specified arguments. +It maintains a cache of downloaded tools in +\fB$NCBI_CONVERTER_DIR\fP +(\fB$HOME/.cache/ncbi\-converters\fP by default). +.SH OPTIONS +.TP +\fIname\fP +Converter to run. +.TP +\fIarg\fP +Argument to supply to it. +.SH SEE ALSO +.BR efetch (1). diff --git a/debian/man/xtract.1 b/debian/man/xtract.1 index 1d6fdef..caeaef3 100644 --- a/debian/man/xtract.1 +++ b/debian/man/xtract.1 @@ -60,6 +60,7 @@ xtract \- convert XML into a table of data values [\|\fB\-words\fP\ \fIelement\fP\|] [\|\fB\-pairs\fP\ \fIelement\fP\|] [\|\fB\-phrase\fP\ \fIelement\fP\|] +[\|\fB\-letters\fP\ \fIelement\fP\|] [\|\fB\-0\-based\fP\ \fIelement\fP\|] [\|\fB\-1\-based\fP\ \fIelement\fP\|] [\|\fB\-ucsc\-based\fP\ \fIelement\fP\|] @@ -304,6 +305,9 @@ Adjacent informative words. .TP \fB\-phrase\fP\ \fIelement\fP Experimental index generation. +.TP +\fB\-letters\fP\ \fIelement\fP +Separate individual letters. .SS Sequence Coordinates .TP \fB\-0\-based\fP\ \fIelement\fP @@ -354,6 +358,8 @@ Print after each record. .RS .IP \fBcompact\fP 9 Compress runs of spaces. +.IP \fBflush\fP 9 +Suppress line indentation. .IP \fBindent\fP 9 Indent according to nesting depth. .IP \fBexpand\fP 9 |