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authorAaron M. Ucko <ucko@debian.org>2017-10-05 21:50:02 -0400
committerAaron M. Ucko <ucko@debian.org>2017-10-05 21:50:02 -0400
commitf009e40f3fc2759c477eadb276a61b39705f8e99 (patch)
tree75672ab922b587eb97d4d9ab37563c2d07781aec
parentd650f9d5a5f718bf7f302db21b5385fbaed548d6 (diff)
debian/man/xtract.1: Update for 7.10.20170814(+ds).
Document new -spaces, -prepare, -ignore, and -unique option; regroup -compress and -phrase per upstream -help output.
-rw-r--r--debian/changelog2
-rw-r--r--debian/man/xtract.132
2 files changed, 26 insertions, 8 deletions
diff --git a/debian/changelog b/debian/changelog
index 7a99869..1318537 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -5,7 +5,7 @@ ncbi-entrez-direct (7.10.20170814+ds-1) UNRELEASED; urgency=medium
storage, which may migrate to /usr/bin when they're more mature.
* debian/man/{efilter,esearch,xtract}.1: Update for new release.
- -- Aaron M. Ucko <ucko@debian.org> Thu, 05 Oct 2017 21:42:19 -0400
+ -- Aaron M. Ucko <ucko@debian.org> Thu, 05 Oct 2017 21:50:01 -0400
ncbi-entrez-direct (6.90.20170705+ds-2) unstable; urgency=medium
diff --git a/debian/man/xtract.1 b/debian/man/xtract.1
index f93b7cf..2135fa6 100644
--- a/debian/man/xtract.1
+++ b/debian/man/xtract.1
@@ -4,11 +4,12 @@ xtract \- convert XML into a table of data values
.SH SYNOPSIS
\fBxtract\fP
[\|\fB\-help\fP\|]
-[\|\fB\-compress\fP\|]
[\|\fB\-mixed\fP\|]
[\|\fB\-strict\fP\|]
[\|\fB\-accent\fP\|]
[\|\fB\-ascii\fP\|]
+[\|\fB\-compress\fP\|]
+[\|\fB\-spaces\fP\|]
[\|\fB\-input\fP\ \fIfilename\fP\|]
[\|\fB\-pattern\fP\ \fIexpr\fP\|]
[\|\fB\-group\fP\ \fIexpr\fP\|]
@@ -64,6 +65,7 @@ xtract \- convert XML into a table of data values
[\|\fB\-pairs\fP\ \fIelement\fP\|]
[\|\fB\-letters\fP\ \fIelement\fP\|]
[\|\fB\-indices\fP\ \fIelement\fP\|]
+[\|\fB\-phrase\fP\ \fIstr\fP\|]
[\|\fB\-0\-based\fP\ \fIelement\fP\|]
[\|\fB\-1\-based\fP\ \fIelement\fP\|]
[\|\fB\-ucsc\-based\fP\ \fIelement\fP\|]
@@ -79,8 +81,10 @@ xtract \- convert XML into a table of data values
[\|\fB\-synopsis\fP\|]
[\|\fB\-stash\fP\ \fIdirectory\fP\|]
[\|\fB\-index\fP\ \fIelement\fP\|]
+[\|\fB\-prepare\fP\ \fBrelease\fP|\fBreport\fP\|]
+[\|\fB\-ignore\fP\|]
[\|\fB\-missing\fP\|]
-[\|\fB\-phrase\fP\ \fIstr\fP\|]
+[\|\fB\-unique\fP\ \fIfilename\fP\|]
[\|\fB\-examples\fP\|]
[\|\fB\-extras\fP\|]
[\|\fB\-version\fP\|]
@@ -91,9 +95,6 @@ according to user\-specified rules.
.SH OPTIONS
.SS Processing Flags
.TP
-\fB\-compress\fP
-Compress runs of spaces.
-.TP
\fB\-mixed\fP
Allow PubMed mixed content.
.TP
@@ -106,6 +107,12 @@ Delete Unicode accents.
\fB\-ascii\fP
Convert Unicode to numeric character references.
.TP
+\fB\-compress\fP
+Compress runs of spaces.
+.TP
+\fB\-spaces\fP
+Fix non\-ASCII spaces.
+.TP
\fB\-input\fP\ \fIfilename\fP
Read XML from file instead of standard input.
.SS Exploration Argument Hierarchy
@@ -325,6 +332,10 @@ Separate individual letters.
.TP
\fB\-indices\fP\ \fIelement\fP
Experimental index generation.
+.SS Phrase Filtering
+.TP
+\fB\-phrase\fP\ \fIstr\fP
+Keep records that contain a given phrase.
.SS Sequence Coordinates
.TP
\fB\-0\-based\fP\ \fIelement\fP
@@ -437,12 +448,19 @@ Base path for individual XML files.
.TP
\fB\-index\fP\ \fIelement\fP
Name of element to use for identifier.
+.SS Processing Commands
+.TP
+\fB\-prepare\fP\ \fBrelease\fP|\fBreport\fP
+Compare daily update to stash.
+.TP
+\fB\-ignore\fP
+Ignore contents of object in \fB\-prepare\fP comparisons.
.TP
\fB\-missing\fP
Print list of missing identifiers.
.TP
-\fB\-phrase\fP\ \fIstr\fP
-Keep records that contain a given phrase.
+\fB\-unique\fP\ \fIfilename\fP
+File of UIDs for skipping all but last version.
.SS Documentation
.TP
\fB\-help\fP