diff options
author | Aaron M. Ucko <ucko@debian.org> | 2017-10-05 21:50:02 -0400 |
---|---|---|
committer | Aaron M. Ucko <ucko@debian.org> | 2017-10-05 21:50:02 -0400 |
commit | f009e40f3fc2759c477eadb276a61b39705f8e99 (patch) | |
tree | 75672ab922b587eb97d4d9ab37563c2d07781aec | |
parent | d650f9d5a5f718bf7f302db21b5385fbaed548d6 (diff) |
debian/man/xtract.1: Update for 7.10.20170814(+ds).
Document new -spaces, -prepare, -ignore, and -unique option; regroup
-compress and -phrase per upstream -help output.
-rw-r--r-- | debian/changelog | 2 | ||||
-rw-r--r-- | debian/man/xtract.1 | 32 |
2 files changed, 26 insertions, 8 deletions
diff --git a/debian/changelog b/debian/changelog index 7a99869..1318537 100644 --- a/debian/changelog +++ b/debian/changelog @@ -5,7 +5,7 @@ ncbi-entrez-direct (7.10.20170814+ds-1) UNRELEASED; urgency=medium storage, which may migrate to /usr/bin when they're more mature. * debian/man/{efilter,esearch,xtract}.1: Update for new release. - -- Aaron M. Ucko <ucko@debian.org> Thu, 05 Oct 2017 21:42:19 -0400 + -- Aaron M. Ucko <ucko@debian.org> Thu, 05 Oct 2017 21:50:01 -0400 ncbi-entrez-direct (6.90.20170705+ds-2) unstable; urgency=medium diff --git a/debian/man/xtract.1 b/debian/man/xtract.1 index f93b7cf..2135fa6 100644 --- a/debian/man/xtract.1 +++ b/debian/man/xtract.1 @@ -4,11 +4,12 @@ xtract \- convert XML into a table of data values .SH SYNOPSIS \fBxtract\fP [\|\fB\-help\fP\|] -[\|\fB\-compress\fP\|] [\|\fB\-mixed\fP\|] [\|\fB\-strict\fP\|] [\|\fB\-accent\fP\|] [\|\fB\-ascii\fP\|] +[\|\fB\-compress\fP\|] +[\|\fB\-spaces\fP\|] [\|\fB\-input\fP\ \fIfilename\fP\|] [\|\fB\-pattern\fP\ \fIexpr\fP\|] [\|\fB\-group\fP\ \fIexpr\fP\|] @@ -64,6 +65,7 @@ xtract \- convert XML into a table of data values [\|\fB\-pairs\fP\ \fIelement\fP\|] [\|\fB\-letters\fP\ \fIelement\fP\|] [\|\fB\-indices\fP\ \fIelement\fP\|] +[\|\fB\-phrase\fP\ \fIstr\fP\|] [\|\fB\-0\-based\fP\ \fIelement\fP\|] [\|\fB\-1\-based\fP\ \fIelement\fP\|] [\|\fB\-ucsc\-based\fP\ \fIelement\fP\|] @@ -79,8 +81,10 @@ xtract \- convert XML into a table of data values [\|\fB\-synopsis\fP\|] [\|\fB\-stash\fP\ \fIdirectory\fP\|] [\|\fB\-index\fP\ \fIelement\fP\|] +[\|\fB\-prepare\fP\ \fBrelease\fP|\fBreport\fP\|] +[\|\fB\-ignore\fP\|] [\|\fB\-missing\fP\|] -[\|\fB\-phrase\fP\ \fIstr\fP\|] +[\|\fB\-unique\fP\ \fIfilename\fP\|] [\|\fB\-examples\fP\|] [\|\fB\-extras\fP\|] [\|\fB\-version\fP\|] @@ -91,9 +95,6 @@ according to user\-specified rules. .SH OPTIONS .SS Processing Flags .TP -\fB\-compress\fP -Compress runs of spaces. -.TP \fB\-mixed\fP Allow PubMed mixed content. .TP @@ -106,6 +107,12 @@ Delete Unicode accents. \fB\-ascii\fP Convert Unicode to numeric character references. .TP +\fB\-compress\fP +Compress runs of spaces. +.TP +\fB\-spaces\fP +Fix non\-ASCII spaces. +.TP \fB\-input\fP\ \fIfilename\fP Read XML from file instead of standard input. .SS Exploration Argument Hierarchy @@ -325,6 +332,10 @@ Separate individual letters. .TP \fB\-indices\fP\ \fIelement\fP Experimental index generation. +.SS Phrase Filtering +.TP +\fB\-phrase\fP\ \fIstr\fP +Keep records that contain a given phrase. .SS Sequence Coordinates .TP \fB\-0\-based\fP\ \fIelement\fP @@ -437,12 +448,19 @@ Base path for individual XML files. .TP \fB\-index\fP\ \fIelement\fP Name of element to use for identifier. +.SS Processing Commands +.TP +\fB\-prepare\fP\ \fBrelease\fP|\fBreport\fP +Compare daily update to stash. +.TP +\fB\-ignore\fP +Ignore contents of object in \fB\-prepare\fP comparisons. .TP \fB\-missing\fP Print list of missing identifiers. .TP -\fB\-phrase\fP\ \fIstr\fP -Keep records that contain a given phrase. +\fB\-unique\fP\ \fIfilename\fP +File of UIDs for skipping all but last version. .SS Documentation .TP \fB\-help\fP |