Finalize ncbi-entrez-direct 10.5.20181204+ds-1 for unstable.debian/10.5.20181204+ds-1archive/debian/10.5.20181204+ds-1

2 files changed, 57 insertions, 14 deletions

diff --git a/debian/changelog b/debian/changelog
index dad6d3c..d837e97 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,6 +1,6 @@
-ncbi-entrez-direct (10.5.20181204+ds-1) UNRELEASED; urgency=medium
+ncbi-entrez-direct (10.5.20181204+ds-1) unstable; urgency=medium
 
-  * New upstream release.  (NOT RELEASED YET.)
+  * New upstream release.
   * (debian/).gitignore: Update per GOPATH change.
   * debian/control:
     - Build-depend on dh-golang, golang-github-dataence-porter2-dev,
@@ -50,7 +50,7 @@ ncbi-entrez-direct (10.5.20181204+ds-1) UNRELEASED; urgency=medium
     github.com/shirou/gopsutil/mem, filling in for a different third-party
     library that lacks a declared license.
 
- -- Aaron M. Ucko <ucko@debian.org>  Wed, 05 Dec 2018 17:43:32 -0500
+ -- Aaron M. Ucko <ucko@debian.org>  Wed, 05 Dec 2018 21:19:35 -0500
 
 ncbi-entrez-direct (7.40.20170928+ds-1) unstable; urgency=medium
 
diff --git a/debian/patches/debian-changes b/debian/patches/debian-changes
index 1cab889..2a7cc9c 100644
--- a/debian/patches/debian-changes
+++ b/debian/patches/debian-changes
@@ -5,17 +5,59 @@ Description: <short summary of the patch>
  information below has been extracted from the changelog. Adjust it or drop
  it.
  .
- ncbi-entrez-direct (7.40.20170928+ds-1) unstable; urgency=medium
+ ncbi-entrez-direct (10.5.20181204+ds-1) unstable; urgency=medium
  .
    * New upstream release.
-   * debian/control: Unconditionalize Go build dependencies.
-   * debian/examples: Add several new scripts for experimental local record
-     storage, which may migrate to /usr/bin when they're more mature.
-   * debian/man/{efilter,esearch,xtract}.1: Update for new release.
-   * debian/rules: Remove fallback logic to install the old Perl
-     implementation of xtract, now retired upstream.
-   * Standards-Version: 4.1.1 (already compliant).
+   * (debian/).gitignore: Update per GOPATH change.
+   * debian/control:
+     - Build-depend on dh-golang, golang-github-dataence-porter2-dev,
+       golang-github-fatih-color-dev, golang-github-klauspost-cpuid-dev,
+       golang-github-rainycape-unidecode-dev, and
+       golang-github-shirou-gopsutil-dev.
+     - Set Built-Using (with the help of dh-golang).
+     - Bump minimum Go version to 1.10 for strings.Builder.
+     - Depend on libxml-simple-perl.
+     - Repoint Vcs-{Browser,Git} at salsa.debian.org.
+     - Rules-Requires-Root: no (confirmed safe).
+     - Standards-Version: 4.2.1 (compliant at this point).
+   * debian/examples: Remove local storage/indexing scripts (considered
+     official enough for /usr/bin at this point), leaving only asp-* and
+     has-asp, which promote non-free software; add test-pubmed-index.
+   * debian/man/{archive-pubmed,download-pubmed,download-sequence,eblast,
+     fetch-pubmed,index-pubmed,intersect-uid-lists,(local-)phrase-search,
+     pm-clean,pm-erase,pm-invert,pm-log,pm-merge,pm-prepare,pm-promote,
+     pm-refresh,pm-repack,pm-stash,pm-uids,pm-verify,protein-neighbors,rchive,
+     stream-pubmed,transmute}.1: Document newly added tools.
+   * debian/man/{edirect,nquire,xtract}.1: Fix old documentation bugs.
+   * debian/man/{efetch,efilter,elink,entrez-phrase-search,ftp-cp,ftp-ls,
+     nquire,xtract}.1: Update for new release.
+   * debian/rules:
+     - Change (autopopulated) GOPATH to meet dh-golang's expectations.
+     - Belatedly run dh --with=golang to populate (misc:)Built-Using.
+     - Clean up remaining cruft from when Go support was optional.
+     - Pull github.com/surgebase/porter2 (aka gh.c/dataence/porter2),
+       github.com/fatih/color (along with its dependencies
+       github.com/mattn/go-{colorable,isatty}), github.com/klauspost/cpuid,
+       github.com/rainycape/unidecode (aliased, per rchive.go's expectations,
+       to github.com/fiam/gounidecode/unidecode), github.com/shirou/gopsutil
+       (along with its dependency golang.org/x/sys/unix), and our ersatz
+       github.com/pbnjay/memory into the path.  (The rainycape version of
+       unidecode has the key advantages of being fresher and already packaged
+       for Debian.)
+     - Build rchive.go in addition to xtract.go; build both against a
+       common.go factored out of xtract.go.
+     - Install run-ncbi-converter (accidentally left off earlier).
+     - Flip Perl scripts back to running via /usr/bin/perl (from
+       /usr/bin/env perl).
+     - Enforce use of Go version 1.10 or newer, even if the default is older.
+     - Install local storage/indexing scripts to /usr/bin.  (Closes: #901028.)
+     - Install new eblast wrapper (corresponding to new -blast mode) and
+       protein-neighbors script.
+   * debian/vendor/github.com/pbnjay/memory/memory.go: New wrapper around
+     github.com/shirou/gopsutil/mem, filling in for a different third-party
+     library that lacks a declared license.
 Author: Aaron M. Ucko <ucko@debian.org>
+Bug-Debian: https://bugs.debian.org/901028
 
 ---
 The information above should follow the Patch Tagging Guidelines, please
@@ -28,10 +70,11 @@ Bug-Debian: https://bugs.debian.org/<bugnumber>
 Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber>
 Forwarded: <no|not-needed|url proving that it has been forwarded>
 Reviewed-By: <name and email of someone who approved the patch>
-Last-Update: 2017-10-06
+Last-Update: 2018-12-06
 
 --- /dev/null
-+++ ncbi-entrez-direct-7.40.20170928+ds/.gitignore
-@@ -0,0 +1,2 @@
++++ ncbi-entrez-direct-10.5.20181204+ds/.gitignore
+@@ -0,0 +1,3 @@
 +.pc
 +bin
++obj-*/