diff options
author | Pranav Ballaney <ballaneypranav@gmail.com> | 2020-05-06 18:29:39 +0530 |
---|---|---|
committer | Pranav Ballaney <ballaneypranav@gmail.com> | 2020-05-06 18:29:39 +0530 |
commit | ef383220a091111f189742bf0c0f1af8d5fb1a63 (patch) | |
tree | cf3286872fcaa5d48f4b3ebd159f37f49aacd509 /debian/tests | |
parent | 1f3be533d1fca7a9d1acd5f459855e14d905ef16 (diff) |
Install examples and docs
Diffstat (limited to 'debian/tests')
-rw-r--r-- | debian/tests/data/list1 | 10 | ||||
-rw-r--r-- | debian/tests/data/list2 | 5 | ||||
-rw-r--r-- | debian/tests/data/list3 | 14 | ||||
-rw-r--r-- | debian/tests/data/sample.gbf | 44 | ||||
-rw-r--r-- | debian/tests/data/sample.json | 79 | ||||
-rw-r--r-- | debian/tests/data/sample.xml | 72 | ||||
-rw-r--r-- | debian/tests/data/sample_query.xml | 1225 | ||||
-rw-r--r-- | debian/tests/data/stopwords | 138 |
8 files changed, 1587 insertions, 0 deletions
diff --git a/debian/tests/data/list1 b/debian/tests/data/list1 new file mode 100644 index 0000000..5c0336c --- /dev/null +++ b/debian/tests/data/list1 @@ -0,0 +1,10 @@ +1246019 +388970 +346446933 +346446931 +346446927 +346446929 +1540347631 +1002351213 +1540347628 +1824675943
\ No newline at end of file diff --git a/debian/tests/data/list2 b/debian/tests/data/list2 new file mode 100644 index 0000000..e53af83 --- /dev/null +++ b/debian/tests/data/list2 @@ -0,0 +1,5 @@ +388970 +346446927 +346446929 +1002351213 +1540347628 diff --git a/debian/tests/data/list3 b/debian/tests/data/list3 new file mode 100644 index 0000000..7f93bec --- /dev/null +++ b/debian/tests/data/list3 @@ -0,0 +1,14 @@ +1246019 +388970 +346446933 +346446931 +346446927 +346446929 +1540347631 +1002351213 +1540347628 +1824675943388970 +346446927 +346446929 +1002351213 +1540347628 diff --git a/debian/tests/data/sample.gbf b/debian/tests/data/sample.gbf new file mode 100644 index 0000000..7dbd676 --- /dev/null +++ b/debian/tests/data/sample.gbf @@ -0,0 +1,44 @@ +LOCUS AF068625 200 bp mRNA linear ROD 06-DEC-1999 +DEFINITION Mus musculus DNA cytosine-5 methyltransferase 3A (Dnmt3a) mRNA, + complete cds. +ACCESSION AF068625 REGION: 1..200 +VERSION AF068625.2 GI:6449467 +KEYWORDS . +SOURCE Mus musculus (house mouse) + ORGANISM Mus musculus + Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; + Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; + Sciurognathi; Muroidea; Muridae; Murinae; Mus. +REFERENCE 1 (bases 1 to 200) + AUTHORS Okano,M., Xie,S. and Li,E. + TITLE Cloning and characterization of a family of novel mammalian DNA + (cytosine-5) methyltransferases + JOURNAL Nat. Genet. 19 (3), 219-220 (1998) + PUBMED 9662389 +REFERENCE 2 (bases 1 to 200) + AUTHORS Xie,S., Okano,M. and Li,E. + TITLE Direct Submission + JOURNAL Submitted (28-MAY-1998) CVRC, Mass. Gen. Hospital, 149 13th Street, + Charlestown, MA 02129, USA +REFERENCE 3 (bases 1 to 200) + AUTHORS Okano,M., Chijiwa,T., Sasaki,H. and Li,E. + TITLE Direct Submission + JOURNAL Submitted (04-NOV-1999) CVRC, Mass. Gen. Hospital, 149 13th Street, + Charlestown, MA 02129, USA + REMARK Sequence update by submitter +COMMENT On Nov 18, 1999 this sequence version replaced gi:3327977. +FEATURES Location/Qualifiers + source 1..200 + /organism="Mus musculus" + /mol_type="mRNA" + /db_xref="taxon:10090" + /chromosome="12" + /map="4.0 cM" + gene 1..>200 + /gene="Dnmt3a" +ORIGIN + 1 gaattccggc ctgctgccgg gccgcccgac ccgccgggcc acacggcaga gccgcctgaa + 61 gcccagcgct gaggctgcac ttttccgagg gcttgacatc agggtctatg tttaagtctt + 121 agctcttgct tacaaagacc acggcaattc cttctctgaa gccctcgcag ccccacagcg + 181 ccctcgcagc cccagcctgc +//
\ No newline at end of file diff --git a/debian/tests/data/sample.json b/debian/tests/data/sample.json new file mode 100644 index 0000000..b8e294c --- /dev/null +++ b/debian/tests/data/sample.json @@ -0,0 +1,79 @@ +{ + "INSDSet" : { + "INSDSeq" : { + "INSDSeq_topology" : "linear", + "INSDSeq_definition" : "Mus musculus DNA cytosine-5 methyltransferase 3A (Dnmt3a) mRNA, complete cds", + "INSDSeq_division" : "ROD", + "INSDSeq_source" : "Mus musculus (house mouse)", + "INSDSeq_update-date" : "06-DEC-1999", + "INSDSeq_locus" : "AF068625", + "INSDSeq_taxonomy" : "Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus", + "INSDSeq_feature-table" : { + "INSDFeature" : [ + { + "INSDFeature_quals" : { + "INSDQualifier" : [ + { + "INSDQualifier_value" : "Mus musculus", + "INSDQualifier_name" : "organism" + }, + { + "INSDQualifier_value" : "mRNA", + "INSDQualifier_name" : "mol_type" + }, + { + "INSDQualifier_name" : "db_xref", + "INSDQualifier_value" : "taxon:10090" + }, + { + "INSDQualifier_value" : "12", + "INSDQualifier_name" : "chromosome" + }, + { + "INSDQualifier_name" : "map", + "INSDQualifier_value" : "4.0 cM" + } + ] + }, + "INSDFeature_location" : "1..200", + "INSDFeature_key" : "source", + "INSDFeature_intervals" : { + "INSDInterval" : { + "INSDInterval_to" : "200", + "INSDInterval_accession" : "AF068625.2", + "INSDInterval_from" : "1" + } + } + }, + { + "INSDFeature_quals" : { + "INSDQualifier" : { + "INSDQualifier_name" : "gene", + "INSDQualifier_value" : "Dnmt3a" + } + }, + "INSDFeature_key" : "gene", + "INSDFeature_intervals" : { + "INSDInterval" : { + "INSDInterval_from" : "1", + "INSDInterval_to" : "200", + "INSDInterval_accession" : "AF068625.2" + } + }, + "INSDFeature_location" : "1..>200", + "INSDFeature_partial3" : { + "value" : "true" + } + } + ] + }, + "INSDSeq_sequence" : "gaattccggcctgctgccgggccgcccgacccgccgggccacacggcagagccgcctgaagcccagcgctgaggctgcacttttccgagggcttgacatcagggtctatgtttaagtcttagctcttgcttacaaagaccacggcaattccttctctgaagccctcgcagccccacagcgccctcgcagccccagcctgc", + "INSDSeq_primary-accession" : "AF068625", + "INSDSeq_accession-version" : "AF068625.2", + "INSDSeq_length" : "200", + "INSDSeq_moltype" : "MRNA", + "INSDSeq_organism" : "Mus musculus" + } + } +} + diff --git a/debian/tests/data/sample.xml b/debian/tests/data/sample.xml new file mode 100644 index 0000000..3e4a877 --- /dev/null +++ b/debian/tests/data/sample.xml @@ -0,0 +1,72 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE INSDSet PUBLIC "-//NCBI//INSD INSDSeq/EN" "https://www.ncbi.nlm.nih.gov/dtd/INSD_INSDSeq.dtd"> +<INSDSet> + <INSDSeq> + <INSDSeq_locus>AF068625</INSDSeq_locus> + <INSDSeq_length>200</INSDSeq_length> + <INSDSeq_moltype>MRNA</INSDSeq_moltype> + <INSDSeq_topology>linear</INSDSeq_topology> + <INSDSeq_division>ROD</INSDSeq_division> + <INSDSeq_update-date>06-DEC-1999</INSDSeq_update-date> + <INSDSeq_definition>Mus musculus DNA cytosine-5 methyltransferase 3A (Dnmt3a) mRNA, complete cds</INSDSeq_definition> + <INSDSeq_primary-accession>AF068625</INSDSeq_primary-accession> + <INSDSeq_accession-version>AF068625.2</INSDSeq_accession-version> + <INSDSeq_source>Mus musculus (house mouse)</INSDSeq_source> + <INSDSeq_organism>Mus musculus</INSDSeq_organism> + <INSDSeq_taxonomy>Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus</INSDSeq_taxonomy> + <INSDSeq_feature-table> + <INSDFeature> + <INSDFeature_key>source</INSDFeature_key> + <INSDFeature_location>1..200</INSDFeature_location> + <INSDFeature_intervals> + <INSDInterval> + <INSDInterval_from>1</INSDInterval_from> + <INSDInterval_to>200</INSDInterval_to> + <INSDInterval_accession>AF068625.2</INSDInterval_accession> + </INSDInterval> + </INSDFeature_intervals> + <INSDFeature_quals> + <INSDQualifier> + <INSDQualifier_name>organism</INSDQualifier_name> + <INSDQualifier_value>Mus musculus</INSDQualifier_value> + </INSDQualifier> + <INSDQualifier> + <INSDQualifier_name>mol_type</INSDQualifier_name> + <INSDQualifier_value>mRNA</INSDQualifier_value> + </INSDQualifier> + <INSDQualifier> + <INSDQualifier_name>db_xref</INSDQualifier_name> + <INSDQualifier_value>taxon:10090</INSDQualifier_value> + </INSDQualifier> + <INSDQualifier> + <INSDQualifier_name>chromosome</INSDQualifier_name> + <INSDQualifier_value>12</INSDQualifier_value> + </INSDQualifier> + <INSDQualifier> + <INSDQualifier_name>map</INSDQualifier_name> + <INSDQualifier_value>4.0 cM</INSDQualifier_value> + </INSDQualifier> + </INSDFeature_quals> + </INSDFeature> + <INSDFeature> + <INSDFeature_key>gene</INSDFeature_key> + <INSDFeature_location>1..>200</INSDFeature_location> + <INSDFeature_intervals> + <INSDInterval> + <INSDInterval_from>1</INSDInterval_from> + <INSDInterval_to>200</INSDInterval_to> + <INSDInterval_accession>AF068625.2</INSDInterval_accession> + </INSDInterval> + </INSDFeature_intervals> + <INSDFeature_partial3 value="true"/> + <INSDFeature_quals> + <INSDQualifier> + <INSDQualifier_name>gene</INSDQualifier_name> + <INSDQualifier_value>Dnmt3a</INSDQualifier_value> + </INSDQualifier> + </INSDFeature_quals> + </INSDFeature> + </INSDSeq_feature-table> + <INSDSeq_sequence>gaattccggcctgctgccgggccgcccgacccgccgggccacacggcagagccgcctgaagcccagcgctgaggctgcacttttccgagggcttgacatcagggtctatgtttaagtcttagctcttgcttacaaagaccacggcaattccttctctgaagccctcgcagccccacagcgccctcgcagccccagcctgc</INSDSeq_sequence> + </INSDSeq> +</INSDSet> diff --git a/debian/tests/data/sample_query.xml b/debian/tests/data/sample_query.xml new file mode 100644 index 0000000..8132fbe --- /dev/null +++ b/debian/tests/data/sample_query.xml @@ -0,0 +1,1225 @@ +<?xml version="1.0" ?> +<!DOCTYPE Entrezgene-Set PUBLIC "-//NLM//DTD NCBI-Entrezgene, 21st January 2005//EN" "https://www.ncbi.nlm.nih.gov/data_specs/dtd/NCBI_Entrezgene.dtd"> +<Entrezgene-Set> +<Entrezgene> + <Entrezgene_track-info> + <Gene-track> + <Gene-track_geneid>100645650</Gene-track_geneid> + <Gene-track_status value="live">0</Gene-track_status> + <Gene-track_create-date> + <Date> + <Date_std> + <Date-std> + <Date-std_year>2011</Date-std_year> + <Date-std_month>7</Date-std_month> + <Date-std_day>15</Date-std_day> + </Date-std> + </Date_std> + </Date> + </Gene-track_create-date> + <Gene-track_update-date> + <Date> + <Date_std> + <Date-std> + <Date-std_year>2020</Date-std_year> + <Date-std_month>4</Date-std_month> + <Date-std_day>21</Date-std_day> + <Date-std_hour>8</Date-std_hour> + <Date-std_minute>8</Date-std_minute> + <Date-std_second>0</Date-std_second> + </Date-std> + </Date_std> + </Date> + </Gene-track_update-date> + </Gene-track> + </Entrezgene_track-info> + <Entrezgene_type value="protein-coding">6</Entrezgene_type> + <Entrezgene_source> + <BioSource> + <BioSource_genome value="genomic">1</BioSource_genome> + <BioSource_origin value="natural">1</BioSource_origin> + <BioSource_org> + <Org-ref> + <Org-ref_taxname>Bombus terrestris</Org-ref_taxname> + <Org-ref_common>buff-tailed bumblebee</Org-ref_common> + <Org-ref_db> + <Dbtag> + <Dbtag_db>taxon</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>30195</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Org-ref_db> + <Org-ref_orgname> + <OrgName> + <OrgName_name> + <OrgName_name_binomial> + <BinomialOrgName> + <BinomialOrgName_genus>Bombus</BinomialOrgName_genus> + <BinomialOrgName_species>terrestris</BinomialOrgName_species> + </BinomialOrgName> + </OrgName_name_binomial> + </OrgName_name> + <OrgName_attrib>specified</OrgName_attrib> + <OrgName_lineage>Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Bombus; Bombus</OrgName_lineage> + <OrgName_gcode>1</OrgName_gcode> + <OrgName_mgcode>5</OrgName_mgcode> + <OrgName_div>INV</OrgName_div> + </OrgName> + </Org-ref_orgname> + </Org-ref> + </BioSource_org> + <BioSource_subtype> + <SubSource> + <SubSource_subtype value="chromosome">1</SubSource_subtype> + <SubSource_name>LG B12</SubSource_name> + </SubSource> + </BioSource_subtype> + </BioSource> + </Entrezgene_source> + <Entrezgene_gene> + <Gene-ref> + <Gene-ref_locus>LOC100645650</Gene-ref_locus> + <Gene-ref_desc>putative fatty acyl-CoA reductase CG5065</Gene-ref_desc> + <Gene-ref_maploc>LG B12</Gene-ref_maploc> + </Gene-ref> + </Entrezgene_gene> + <Entrezgene_prot> + <Prot-ref> + <Prot-ref_desc>putative fatty acyl-CoA reductase CG5065</Prot-ref_desc> + </Prot-ref> + </Entrezgene_prot> + <Entrezgene_gene-source> + <Gene-source> + <Gene-source_src>LocusLink</Gene-source_src> + <Gene-source_src-int>100645650</Gene-source_src-int> + <Gene-source_src-str2>100645650</Gene-source_src-str2> + </Gene-source> + </Entrezgene_gene-source> + <Entrezgene_locus> + <Gene-commentary> + <Gene-commentary_type value="genomic">1</Gene-commentary_type> + <Gene-commentary_heading>Reference Bter_1.0</Gene-commentary_heading> + <Gene-commentary_label>Chromosome LG B12 Reference Bter_1.0</Gene-commentary_label> + <Gene-commentary_accession>NC_015773</Gene-commentary_accession> + <Gene-commentary_version>1</Gene-commentary_version> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7277255</Seq-interval_from> + <Seq-interval_to>7286178</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + </Gene-commentary_seqs> + <Gene-commentary_products> + <Gene-commentary> + <Gene-commentary_type value="mRNA">3</Gene-commentary_type> + <Gene-commentary_heading>Reference</Gene-commentary_heading> + <Gene-commentary_label>transcript variant X1</Gene-commentary_label> + <Gene-commentary_accession>XM_003399832</Gene-commentary_accession> + <Gene-commentary_version>3</Gene-commentary_version> + <Gene-commentary_genomic-coords> + <Seq-loc> + <Seq-loc_mix> + <Seq-loc-mix> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7286046</Seq-interval_from> + <Seq-interval_to>7286178</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7285829</Seq-interval_from> + <Seq-interval_to>7285949</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7280841</Seq-interval_from> + <Seq-interval_to>7281048</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7279196</Seq-interval_from> + <Seq-interval_to>7279435</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7278768</Seq-interval_from> + <Seq-interval_to>7279032</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7278243</Seq-interval_from> + <Seq-interval_to>7278545</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7277877</Seq-interval_from> + <Seq-interval_to>7278084</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7277255</Seq-interval_from> + <Seq-interval_to>7277792</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + </Seq-loc-mix> + </Seq-loc_mix> + </Seq-loc> + </Gene-commentary_genomic-coords> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_whole> + <Seq-id> + <Seq-id_gi>1185560914</Seq-id_gi> + </Seq-id> + </Seq-loc_whole> + </Seq-loc> + </Gene-commentary_seqs> + <Gene-commentary_products> + <Gene-commentary> + <Gene-commentary_type value="peptide">8</Gene-commentary_type> + <Gene-commentary_heading>Reference</Gene-commentary_heading> + <Gene-commentary_accession>XP_003399880</Gene-commentary_accession> + <Gene-commentary_version>1</Gene-commentary_version> + <Gene-commentary_genomic-coords> + <Seq-loc> + <Seq-loc_mix> + <Seq-loc-mix> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7280841</Seq-interval_from> + <Seq-interval_to>7281035</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7279196</Seq-interval_from> + <Seq-interval_to>7279435</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7278768</Seq-interval_from> + <Seq-interval_to>7279032</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7278243</Seq-interval_from> + <Seq-interval_to>7278545</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7277877</Seq-interval_from> + <Seq-interval_to>7278084</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7277489</Seq-interval_from> + <Seq-interval_to>7277792</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + </Seq-loc-mix> + </Seq-loc_mix> + </Seq-loc> + </Gene-commentary_genomic-coords> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_whole> + <Seq-id> + <Seq-id_gi>340722986</Seq-id_gi> + </Seq-id> + </Seq-loc_whole> + </Seq-loc> + </Gene-commentary_seqs> + </Gene-commentary> + </Gene-commentary_products> + </Gene-commentary> + <Gene-commentary> + <Gene-commentary_type value="mRNA">3</Gene-commentary_type> + <Gene-commentary_heading>Reference</Gene-commentary_heading> + <Gene-commentary_label>transcript variant X2</Gene-commentary_label> + <Gene-commentary_accession>XM_012315143</Gene-commentary_accession> + <Gene-commentary_version>2</Gene-commentary_version> + <Gene-commentary_genomic-coords> + <Seq-loc> + <Seq-loc_mix> + <Seq-loc-mix> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7286042</Seq-interval_from> + <Seq-interval_to>7286178</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7285829</Seq-interval_from> + <Seq-interval_to>7285949</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7280841</Seq-interval_from> + <Seq-interval_to>7281048</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7279196</Seq-interval_from> + <Seq-interval_to>7279435</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7278768</Seq-interval_from> + <Seq-interval_to>7279032</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7278243</Seq-interval_from> + <Seq-interval_to>7278545</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7277877</Seq-interval_from> + <Seq-interval_to>7278084</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7277255</Seq-interval_from> + <Seq-interval_to>7277792</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + </Seq-loc-mix> + </Seq-loc_mix> + </Seq-loc> + </Gene-commentary_genomic-coords> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_whole> + <Seq-id> + <Seq-id_gi>1185560915</Seq-id_gi> + </Seq-id> + </Seq-loc_whole> + </Seq-loc> + </Gene-commentary_seqs> + <Gene-commentary_products> + <Gene-commentary> + <Gene-commentary_type value="peptide">8</Gene-commentary_type> + <Gene-commentary_heading>Reference</Gene-commentary_heading> + <Gene-commentary_accession>XP_012170533</Gene-commentary_accession> + <Gene-commentary_version>1</Gene-commentary_version> + <Gene-commentary_genomic-coords> + <Seq-loc> + <Seq-loc_mix> + <Seq-loc-mix> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7280841</Seq-interval_from> + <Seq-interval_to>7281035</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7279196</Seq-interval_from> + <Seq-interval_to>7279435</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7278768</Seq-interval_from> + <Seq-interval_to>7279032</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7278243</Seq-interval_from> + <Seq-interval_to>7278545</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7277877</Seq-interval_from> + <Seq-interval_to>7278084</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7277489</Seq-interval_from> + <Seq-interval_to>7277792</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + </Seq-loc-mix> + </Seq-loc_mix> + </Seq-loc> + </Gene-commentary_genomic-coords> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_whole> + <Seq-id> + <Seq-id_gi>808136365</Seq-id_gi> + </Seq-id> + </Seq-loc_whole> + </Seq-loc> + </Gene-commentary_seqs> + </Gene-commentary> + </Gene-commentary_products> + </Gene-commentary> + </Gene-commentary_products> + </Gene-commentary> + </Entrezgene_locus> + <Entrezgene_properties> + <Gene-commentary> + <Gene-commentary_type value="property">16</Gene-commentary_type> + <Gene-commentary_label>Exon count</Gene-commentary_label> + <Gene-commentary_text>8</Gene-commentary_text> + </Gene-commentary> + </Entrezgene_properties> + <Entrezgene_comments> + <Gene-commentary> + <Gene-commentary_type value="comment">254</Gene-commentary_type> + <Gene-commentary_heading>RefSeq Status</Gene-commentary_heading> + <Gene-commentary_label>MODEL</Gene-commentary_label> + </Gene-commentary> + <Gene-commentary> + <Gene-commentary_type value="comment">254</Gene-commentary_type> + <Gene-commentary_heading>NCBI Reference Sequences (RefSeq)</Gene-commentary_heading> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="comment">254</Gene-commentary_type> + <Gene-commentary_heading>RefSeqs of Annotated Genomes: Bombus terrestris Annotation Release 102</Gene-commentary_heading> + <Gene-commentary_products> + <Gene-commentary> + <Gene-commentary_type value="genomic">1</Gene-commentary_type> + <Gene-commentary_heading>Reference Bter_1.0</Gene-commentary_heading> + <Gene-commentary_accession>NC_015773</Gene-commentary_accession> + <Gene-commentary_version>1</Gene-commentary_version> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>Nucleotide</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>339751241</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7277255</Seq-interval_from> + <Seq-interval_to>7286178</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + </Gene-commentary_seqs> + <Gene-commentary_products> + <Gene-commentary> + <Gene-commentary_type value="mRNA">3</Gene-commentary_type> + <Gene-commentary_accession>XM_003399832</Gene-commentary_accession> + <Gene-commentary_version>3</Gene-commentary_version> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>Nucleotide</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>1185560914</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_whole> + <Seq-id> + <Seq-id_gi>1185560914</Seq-id_gi> + </Seq-id> + </Seq-loc_whole> + </Seq-loc> + </Gene-commentary_seqs> + <Gene-commentary_products> + <Gene-commentary> + <Gene-commentary_type value="peptide">8</Gene-commentary_type> + <Gene-commentary_accession>XP_003399880</Gene-commentary_accession> + <Gene-commentary_version>1</Gene-commentary_version> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>Protein</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>340722986</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + <Other-source_anchor>XP_003399880</Other-source_anchor> + <Other-source_post-text>putative fatty acyl-CoA reductase CG5065</Other-source_post-text> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_whole> + <Seq-id> + <Seq-id_gi>340722986</Seq-id_gi> + </Seq-id> + </Seq-loc_whole> + </Seq-loc> + </Gene-commentary_seqs> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_heading>Conserved Domains</Gene-commentary_heading> + <Gene-commentary_source> + <Other-source> + <Other-source_pre-text>(3)</Other-source_pre-text> + <Other-source_anchor>summary</Other-source_anchor> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>CDD</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>187547</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + <Other-source_anchor>cd05236: FAR-N_SDR_e; fatty acyl CoA reductases (FARs), extended (e) SDRs</Other-source_anchor> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_text>Location: 15 - 332</Gene-commentary_text> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>CDD</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>215538</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + <Other-source_anchor>PLN02996: PLN02996; fatty acyl-CoA reductase</Other-source_anchor> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_text>Location: 4 - 449</Gene-commentary_text> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>CDD</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>281068</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + <Other-source_anchor>pfam03015: Sterile; Male sterility protein</Other-source_anchor> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_text>Location: 359 - 449</Gene-commentary_text> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + </Gene-commentary_products> + </Gene-commentary> + <Gene-commentary> + <Gene-commentary_type value="mRNA">3</Gene-commentary_type> + <Gene-commentary_accession>XM_012315143</Gene-commentary_accession> + <Gene-commentary_version>2</Gene-commentary_version> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>Nucleotide</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>1185560915</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_whole> + <Seq-id> + <Seq-id_gi>1185560915</Seq-id_gi> + </Seq-id> + </Seq-loc_whole> + </Seq-loc> + </Gene-commentary_seqs> + <Gene-commentary_products> + <Gene-commentary> + <Gene-commentary_type value="peptide">8</Gene-commentary_type> + <Gene-commentary_accession>XP_012170533</Gene-commentary_accession> + <Gene-commentary_version>1</Gene-commentary_version> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>Protein</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>808136365</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + <Other-source_anchor>XP_012170533</Other-source_anchor> + <Other-source_post-text>putative fatty acyl-CoA reductase CG5065</Other-source_post-text> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_whole> + <Seq-id> + <Seq-id_gi>808136365</Seq-id_gi> + </Seq-id> + </Seq-loc_whole> + </Seq-loc> + </Gene-commentary_seqs> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_heading>Conserved Domains</Gene-commentary_heading> + <Gene-commentary_source> + <Other-source> + <Other-source_pre-text>(3)</Other-source_pre-text> + <Other-source_anchor>summary</Other-source_anchor> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>CDD</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>187547</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + <Other-source_anchor>cd05236: FAR-N_SDR_e; fatty acyl CoA reductases (FARs), extended (e) SDRs</Other-source_anchor> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_text>Location: 15 - 332</Gene-commentary_text> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>CDD</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>215538</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + <Other-source_anchor>PLN02996: PLN02996; fatty acyl-CoA reductase</Other-source_anchor> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_text>Location: 4 - 449</Gene-commentary_text> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>CDD</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>281068</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + <Other-source_anchor>pfam03015: Sterile; Male sterility protein</Other-source_anchor> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="other">255</Gene-commentary_type> + <Gene-commentary_text>Location: 359 - 449</Gene-commentary_text> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + </Gene-commentary_products> + </Gene-commentary> + </Gene-commentary_products> + </Gene-commentary> + </Gene-commentary_products> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + <Gene-commentary> + <Gene-commentary_type value="comment">254</Gene-commentary_type> + <Gene-commentary_heading>Related Sequences</Gene-commentary_heading> + <Gene-commentary_products> + <Gene-commentary> + <Gene-commentary_type value="genomic">1</Gene-commentary_type> + <Gene-commentary_heading>Genomic</Gene-commentary_heading> + <Gene-commentary_accession>AELG01001811</Gene-commentary_accession> + <Gene-commentary_version>1</Gene-commentary_version> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>Nucleotide</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>313880440</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + <Other-source_anchor>AELG01001811.1</Other-source_anchor> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>2282</Seq-interval_from> + <Seq-interval_to>11205</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="plus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>313880440</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + </Gene-commentary_seqs> + <Gene-commentary_products> + <Gene-commentary> + <Gene-commentary_type value="peptide">8</Gene-commentary_type> + <Gene-commentary_text>None</Gene-commentary_text> + </Gene-commentary> + </Gene-commentary_products> + </Gene-commentary> + <Gene-commentary> + <Gene-commentary_type value="mRNA">3</Gene-commentary_type> + <Gene-commentary_heading>mRNA</Gene-commentary_heading> + <Gene-commentary_accession>JL721175</Gene-commentary_accession> + <Gene-commentary_version>1</Gene-commentary_version> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>Nucleotide</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>335141031</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + <Other-source_anchor>JL721175.1</Other-source_anchor> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_whole> + <Seq-id> + <Seq-id_gi>335141031</Seq-id_gi> + </Seq-id> + </Seq-loc_whole> + </Seq-loc> + </Gene-commentary_seqs> + <Gene-commentary_products> + <Gene-commentary> + <Gene-commentary_type value="peptide">8</Gene-commentary_type> + <Gene-commentary_text>None</Gene-commentary_text> + </Gene-commentary> + </Gene-commentary_products> + </Gene-commentary> + <Gene-commentary> + <Gene-commentary_type value="mRNA">3</Gene-commentary_type> + <Gene-commentary_heading>mRNA</Gene-commentary_heading> + <Gene-commentary_accession>JL816684</Gene-commentary_accession> + <Gene-commentary_version>1</Gene-commentary_version> + <Gene-commentary_source> + <Other-source> + <Other-source_src> + <Dbtag> + <Dbtag_db>Nucleotide</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>335236631</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Other-source_src> + <Other-source_anchor>JL816684.1</Other-source_anchor> + </Other-source> + </Gene-commentary_source> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_whole> + <Seq-id> + <Seq-id_gi>335236631</Seq-id_gi> + </Seq-id> + </Seq-loc_whole> + </Seq-loc> + </Gene-commentary_seqs> + <Gene-commentary_products> + <Gene-commentary> + <Gene-commentary_type value="peptide">8</Gene-commentary_type> + <Gene-commentary_text>None</Gene-commentary_text> + </Gene-commentary> + </Gene-commentary_products> + </Gene-commentary> + </Gene-commentary_products> + </Gene-commentary> + <Gene-commentary> + <Gene-commentary_type value="comment">254</Gene-commentary_type> + <Gene-commentary_heading>Gene Location History</Gene-commentary_heading> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="comment">254</Gene-commentary_type> + <Gene-commentary_heading>Bombus terrestris Annotation Release 102</Gene-commentary_heading> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="assembly">24</Gene-commentary_type> + <Gene-commentary_heading>Bter_1.0</Gene-commentary_heading> + <Gene-commentary_label>Reference</Gene-commentary_label> + <Gene-commentary_text>current</Gene-commentary_text> + <Gene-commentary_accession>GCF_000214255</Gene-commentary_accession> + <Gene-commentary_version>1</Gene-commentary_version> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="assembly-unit">25</Gene-commentary_type> + <Gene-commentary_heading>Primary Assembly</Gene-commentary_heading> + <Gene-commentary_accession>GCF_000214265</Gene-commentary_accession> + <Gene-commentary_version>1</Gene-commentary_version> + <Gene-commentary_comment> + <Gene-commentary> + <Gene-commentary_type value="genomic">1</Gene-commentary_type> + <Gene-commentary_label>Linkage Group LG B12</Gene-commentary_label> + <Gene-commentary_accession>NC_015773</Gene-commentary_accession> + <Gene-commentary_version>1</Gene-commentary_version> + <Gene-commentary_seqs> + <Seq-loc> + <Seq-loc_int> + <Seq-interval> + <Seq-interval_from>7277255</Seq-interval_from> + <Seq-interval_to>7286178</Seq-interval_to> + <Seq-interval_strand> + <Na-strand value="minus"/> + </Seq-interval_strand> + <Seq-interval_id> + <Seq-id> + <Seq-id_gi>339751241</Seq-id_gi> + </Seq-id> + </Seq-interval_id> + </Seq-interval> + </Seq-loc_int> + </Seq-loc> + </Gene-commentary_seqs> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + </Gene-commentary_comment> + </Gene-commentary> + </Entrezgene_comments> + <Entrezgene_unique-keys> + <Dbtag> + <Dbtag_db>LocusID</Dbtag_db> + <Dbtag_tag> + <Object-id> + <Object-id_id>100645650</Object-id_id> + </Object-id> + </Dbtag_tag> + </Dbtag> + </Entrezgene_unique-keys> + <Entrezgene_xtra-index-terms> + <Entrezgene_xtra-index-terms_E>LOC100645650</Entrezgene_xtra-index-terms_E> + </Entrezgene_xtra-index-terms> +</Entrezgene> +</Entrezgene-Set> diff --git a/debian/tests/data/stopwords b/debian/tests/data/stopwords new file mode 100644 index 0000000..427ebdd --- /dev/null +++ b/debian/tests/data/stopwords @@ -0,0 +1,138 @@ +a +about +again +all +almost +also +although +always +among +an +and +another +any +are +as +at +be +because +been +before +being +between +biology +both +but +by +can +could +did +do +does +done +due +during +each +either +enough +especially +etc +for +found +from +further +gene +genome +had +has +have +having +here +how +however +i +if +in +into +is +it +its +itself +just +kg +km +made +mainly +make +may +mg +might +mitochondria +ml +mm +most +mostly +must +nearly +neither +no +nor +obtained +of +often +on +our +overall +perhaps +pmid +protein +quite +rather +really +regarding +seem +seen +several +should +show +showed +shown +shows +significantly +since +so +some +such +than +that +the +their +theirs +them +then +there +therefore +these +they +this +those +through +thus +to +upon +use +used +using +various +very +was +we +were +what +when +which +while +with +within +without +would
\ No newline at end of file |