diff options
Diffstat (limited to 'stash-pubmed')
| -rwxr-xr-x | stash-pubmed | 12 |
1 files changed, 11 insertions, 1 deletions
diff --git a/stash-pubmed b/stash-pubmed index c869975..c076ebe 100755 --- a/stash-pubmed +++ b/stash-pubmed @@ -1,8 +1,18 @@ #!/bin/sh target="$1" +flags="none" + +if [ "$#" -gt 1 ] +then + flags="$1" + target="$2" +fi + for fl in *.xml do + base=${fl%.xml} echo "$fl" - xtract -input "$fl" -stash "$target" -index MedlineCitation/PMID -pattern PubmedArticle + xtract -flags "$flags" -stash "$target" -input "$base.xml" -unique "$base.uid" \ + -index MedlineCitation/PMID -pattern PubmedArticle done |