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|
#!/bin/sh
DATAPATH="$1"
APPPATH=
# KEYPATH=
KEYNAME=asperaweb_id_dsa.openssh
case "`uname -s`" in
Darwin )
sysdir='/Applications/Aspera Connect.app/Contents/Resources'
sysdir2=/bin
userdir=$HOME$sysdir
;;
CYGWIN_NT* )
sysdir='/cygdrive/c/Program Files/Aspera/Aspera Connect/bin'
sysdir2='/cygdrive/c/Program Files (x86)/Aspera/Aspera Connect/bin'
userdir="`cygpath -H`/$USER/AppData/Local/Programs/Aspera/Aspera Connect/bin"
;;
* )
sysdir=/opt/aspera/bin
sysdir2=/bin
userdir=$HOME/.aspera/connect/bin
;;
esac
for d in "$sysdir" "$sysdir2" "$userdir"
do
if "$d/ascp" --version 2>&1 | grep '^Aspera' >/dev/null
then
APPPATH=$d
break
fi
done
if [ -z "$APPPATH" ] && ascp --version 2>&1 | grep '^Aspera' >/dev/null
then
APPPATH=`type -path ascp`
APPPATH=`dirname "$APPPATH"`
fi
if [ -z "$APPPATH" ]
then
cat >&2 <<EOF
Unable to find an Aspera ascp executable in any of the following locations:
$sysdir
$sysdir2
$userdir
$PATH
If you have an installation in some other location, please add the path to
that executable to your PATH environment variable and try again.
EOF
exit 2
fi
for d in "$APPPATH" "$sysdir" "$sysdir2" "$userdir"
do
if [ -f "$d/../etc/$KEYNAME" ]
then
KEYPATH=$d/../etc
break
elif [ -f "$d/$KEYNAME" ]
then
KEYPATH=$d
break
fi
done
if [ -z "$KEYPATH" ]
then
cat >&2 <<EOF
Unable to find $KEYNAME in any of the following locations:
$APPPATH/../etc
$APPPATH
$sysdir/../etc
$sysdir
$sysdir2/../etc
$sysdir2
$userdir/../etc
$userdir
If you have this file in some other location, please set the KEYPATH
environment variable accordingly and try again.
EOF
exit 3
fi
failed=""
if [ "$#" -gt 1 ]
then
fl="$2"
if [ ! -f "$fl" ]
then
"$APPPATH/ascp" -T -q -k 1 -l 500m -i "$KEYPATH/$KEYNAME" \
"anonftp@ftp.ncbi.nlm.nih.gov:/$DATAPATH/$fl" "."
fi
if [ ! -f "$fl" ]
then
failed="$failed\n$fl"
fi
else
while read fl
do
if [ ! -f "$fl" ]
then
echo "$fl"
"$APPPATH/ascp" -T -q -k 1 -l 500m -i "$KEYPATH/$KEYNAME" \
"anonftp@ftp.ncbi.nlm.nih.gov:/$DATAPATH/$fl" "."
fi
if [ ! -f "$fl" ]
then
failed="$failed\n$fl"
fi
done
fi
if [ -n "$failed" ]
then
echo -e "\nFAILED TO DOWNLOAD:\n$failed\n" >&2
exit 1
fi
|
