blob: d0e3169662f1150283bdb374bca26f8d8ebf1e0a (
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|
#!/bin/sh
useasp=`has-asp`
filter() {
while read fl
do
base=${fl%.xml.gz}
if [ -f "$fl" ]
then
continue
fi
if [ -f "$base.snt" ]
then
continue
fi
echo "$fl"
done
}
download() {
if [ "$useasp" == "true" ]
then
asp-ls "pubmed/$1" |
grep -v ".md5" | grep "xml.gz" |
filter |
asp-cp "pubmed/$1"
else
ftp-ls ftp.ncbi.nlm.nih.gov "pubmed/$1" |
grep -v ".md5" | grep "xml.gz" |
filter |
ftp-cp ftp.ncbi.nlm.nih.gov "pubmed/$1"
fi
}
if [ "$#" -eq 0 ]
then
echo "Must indicate either baseline or updatefiles"
exit 1
fi
while [ "$#" -gt 0 ]
do
sect="$1"
shift
download "$sect"
if [ $? -ne 0 ]
then
download "$sect"
fi
done
|
