diff options
author | Aaron M. Ucko <ucko@debian.org> | 2006-05-26 18:34:14 +0000 |
---|---|---|
committer | Aaron M. Ucko <ucko@debian.org> | 2006-05-26 18:34:14 +0000 |
commit | de1d4a4e7eb2f2e1a20a6c3c90f4128f6f344e80 (patch) | |
tree | b98cfcc27d8a53160d6d0d4171f537e667bd9c68 /make | |
parent | 047f9550aeffa40eb05ad53427718889f660e0f4 (diff) |
Load /tmp/.../ncbi-tools6-6.1.20060507 into
branches/upstream/current.
Diffstat (limited to 'make')
-rwxr-xr-x | make/makeLibs.met | 2 | ||||
-rw-r--r-- | make/makeall.unx | 21 | ||||
-rw-r--r-- | make/makenet.unx | 17 | ||||
-rw-r--r-- | make/msvc_prj/algo/blast/api/blastapi.dsp | 20 | ||||
-rw-r--r-- | make/msvc_prj/algo/blast/composition_adjustment/blastcompadj.dsp | 8 | ||||
-rw-r--r-- | make/msvc_prj/algo/blast/core/blast.dsp | 16 | ||||
-rw-r--r-- | make/msvc_prj/connect/connect.dsp | 8 | ||||
-rw-r--r-- | make/xCode/NCBI.xcode/project.pbxproj | 184 |
8 files changed, 208 insertions, 68 deletions
diff --git a/make/makeLibs.met b/make/makeLibs.met index 1ac23ae8..1b4b81fd 100755 --- a/make/makeLibs.met +++ b/make/makeLibs.met @@ -206,7 +206,7 @@ on SetProjectData() "ncbi_ansi_ext", "ncbi_connection", "ncbi_connector", "ncbi_connutil", Â "ncbi_file_connector", "ncbi_host_info.c", "ncbi_http_connector", Â "ncbi_memory_connector", "ncbi_server_info", "ncbi_service", Â - "ncbi_service_connector", "ncbi_dispd", "ncbi_lb", "ncbi_lbsmd_stub", Â + "ncbi_service_connector", "ncbi_dispd", "ncbi_lb", "ncbi_local", "ncbi_lbsmd_stub", Â "ncbi_socket_connector", "ncbi_ftp_connector", "ncbi_sendmail"}) AddSimpleProjectExceptFiles("netcli", {}, "network:nsclilib", {"ni_encr.c", "ni_list.c", "ni_lib.c", "ni_disp.c", "ni_encr.c"}) diff --git a/make/makeall.unx b/make/makeall.unx index 3d220953..fc786901 100644 --- a/make/makeall.unx +++ b/make/makeall.unx @@ -1,6 +1,6 @@ # makefile for asntool and ncbi core routines, # -# $Id: makeall.unx,v 6.269 2005/12/16 16:04:43 lavr Exp $ +# $Id: makeall.unx,v 6.274 2006/05/03 14:41:13 madden Exp $ # # cdromlib data access functions, vibrant, and entrez # SunOS with unbundled ANSI compiler [ make LCL=acc RAN=ranlib CC=acc ] @@ -179,7 +179,7 @@ SRC1 = ncbibs.c wwwutils.c ncbierr.c ncbienv.c ncbifile.c \ ncbi_http_connector.c ncbi_memory_connector.c $(NCBI_LBSM_SRC) \ ncbi_host_info.c ncbi_server_info.c ncbi_service.c \ ncbi_service_connector.c ncbi_ftp_connector.c ncbi_dispd.c \ - ncbi_lb.c ncbi_socket_connector.c urlquery.c binary.c \ + ncbi_lb.c ncbi_local.c ncbi_socket_connector.c urlquery.c binary.c \ ncbi_sendmail.c asn_connection.c raw_scoremat.c \ drwnflpt.c drwnfspc.c drwnmfls.c @@ -259,7 +259,7 @@ SRC23 = csim.c db_slist.c dust.c falign.c g_any.c sim2.c sim3.c sim4.c \ SRCCOMPADJ = matrix_frequency_data.c compo_mode_condition.c \ composition_adjustment.c nlm_linear_algebra.c \ optimize_target_freq.c compo_heap.c smith_waterman.c \ - redo_alignment.c + redo_alignment.c unified_pvalues.c SRC28 = gdfontg.c gdfontmb.c gdfontt.c pictogif.c \ gdfontl.c gdfonts.c ncbidrwg.c drawing.c mapping.c picture.c ncbimain.c @@ -292,12 +292,13 @@ SRC60 = aa_ungapped.c blast_diagnostics.c blast_dust.c blast_engine.c \ mb_lookup.c ncbi_math.c ncbi_std.c pattern.c phi_extend.c phi_lookup.c \ lookup_util.c blast_encoding.c blast_psi.c blast_psi_priv.c blast_kappa.c \ matrix_freq_ratios.c blast_hspstream.c blast_parameters.c blast_posit.c \ - phi_gapalign.c blast_program.c + phi_gapalign.c blast_program.c blast_query_info.c blast_tune.c SRC61 = blast_api.c blast_format.c blast_input.c blast_mtlock.c \ blast_options_api.c blast_prelim.c blast_returns.c blast_seq.c \ blast_seqalign.c blast_tabular.c hspstream_queue.c repeats_filter.c \ - seqsrc_multiseq.c seqsrc_readdb.c twoseq_api.c dust_filter.c + seqsrc_multiseq.c seqsrc_readdb.c twoseq_api.c dust_filter.c \ + blast_message_api.c # objects needed for versions of asntool and entrez @@ -316,7 +317,7 @@ OBJ1 = ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o \ ncbi_http_connector.o ncbi_memory_connector.o $(NCBI_LBSM_OBJ) \ ncbi_host_info.o ncbi_server_info.o ncbi_service.o \ ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o \ - ncbi_lb.o ncbi_socket_connector.o urlquery.o binary.o \ + ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o \ ncbi_sendmail.o asn_connection.o raw_scoremat.o \ drwnflpt.o drwnfspc.o drwnmfls.o @@ -408,7 +409,7 @@ OBJ23 = csim.o db_slist.o dust.o falign.o g_any.o sim2.o sim3.o sim4.o \ OBJCOMPADJ = matrix_frequency_data.o compo_mode_condition.o \ composition_adjustment.o nlm_linear_algebra.o \ optimize_target_freq.o compo_heap.o smith_waterman.o \ - redo_alignment.o + redo_alignment.o unified_pvalues.o OBJ28 = gdfontg.o gdfontmb.o gdfontt.o pictogif.o \ gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o @@ -446,12 +447,13 @@ OBJ60 = aa_ungapped.o blast_diagnostics.o blast_dust.o blast_engine.o blast_exte mb_lookup.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o \ lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o \ matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o \ - phi_gapalign.o blast_program.o + phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o OBJ61 = blast_api.o blast_input.o blast_format.o blast_mtlock.o \ blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o \ blast_seqalign.o blast_tabular.o hspstream_queue.o repeats_filter.o \ - seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o + seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o \ + blast_message_api.o # NOTE: if you enter an object file to an OBJxx greater than 30, you have to explicitly @@ -691,6 +693,7 @@ copy : $(SRCCOPY) ../connect/ncbi_servicep.h . $(SRCCOPY) ../connect/ncbi_dispd.h . $(SRCCOPY) ../connect/ncbi_lbsmd.h . + $(SRCCOPY) ../connect/ncbi_local.h . $(SRCCOPY) ../connect/ncbi_lb.h . $(SRCCOPY) ../connect/*.h ../include -mkdir ../include/connect diff --git a/make/makenet.unx b/make/makenet.unx index c8d8b992..be336c5e 100644 --- a/make/makenet.unx +++ b/make/makenet.unx @@ -1,6 +1,6 @@ # makefile for network demo programs and network entrez # -# $Id: makenet.unx,v 6.213 2006/01/19 16:08:49 beloslyu Exp $ +# $Id: makenet.unx,v 6.216 2006/05/03 03:37:42 kans Exp $ # test, ignore # # Sun with unbundled ANSI compiler [ make CC=acc RAN=ranlib ] @@ -386,7 +386,7 @@ utilities : $(EXEUTIL) vibutilities : $(EXEUTILVIB) -.NO_PARALLEL: copy nocopy Tentrez sequin Psequin sbtedit Ssequin elecpcr asn2fast asn2asn Nbatch Nbatch3 Nentrcmd seqget idfetch test_ncbi_socket test_ncbi_dsock debug_server rtestval rasn2ff asn2gb asn2gb_psf asn2fsa asn2fsa_psf tbl2asn asn2all gene2xml asnval asnval_psf flint gbseqget insdseqget trna2sap trna2tbl testent2 entrez2 spidey dotmatrix ingenue condense bl2seq +.NO_PARALLEL: copy nocopy Tentrez sequin Psequin sbtedit Ssequin elecpcr asn2fast asn2asn cleanasn Nbatch Nbatch3 Nentrcmd seqget idfetch test_ncbi_socket test_ncbi_dsock debug_server rtestval rasn2ff asn2gb asn2gb_psf asn2fsa asn2fsa_psf tbl2asn tbl2asn_psf asn2all gene2xml asnval asnval_psf flint gbseqget insdseqget trna2sap trna2tbl testent2 entrez2 spidey dotmatrix ingenue condense bl2seq .WAIT: echo Waiting...go @@ -515,6 +515,7 @@ copy : $(SRCCOPY) ../demo/elecpcr.c . $(SRCCOPY) ../demo/asn2fast.c . $(SRCCOPY) ../demo/asn2asn.c . + $(SRCCOPY) ../demo/cleanasn.c . $(SRCCOPY) ../demo/fetchent.c . $(SRCCOPY) ../demo/udvmain.c . $(SRCCOPY) ../demo/rtestval.c . @@ -991,6 +992,13 @@ tbl2asn : tbl2asn.c $(CC) -o tbl2asn $(LDFLAGS) tbl2asn.c $(LIB23) $(LIBCOMPADJ) \ $(LIB2) $(NETCLILIB) $(LIB1) $(OTHERLIBS) +# tbl2asn_psf, uses PUBSEQBioseqFetchEnable instead of PubSeqFetchEnable +# should be used only internally within NCBI. +tbl2asn_psf : tbl2asn.c + $(CC) -DINTERNAL_NCBI_TBL2ASN -g -o tbl2asn_psf $(LDFLAGS) tbl2asn.c $(THREAD_OBJ) $(LIB_PS) \ + $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIB1) $(NCBI_SYBLIBS_CT_r) \ + $(OTHERLIBS) $(THREAD_OTHERLIBS) + # gene2xml program (gene2xml) gene2xml : gene2xml.c $(CC) -g -o gene2xml $(LDFLAGS) gene2xml.c $(NETCLILIB) $(LIB2) $(LIB1) $(OTHERLIBS) @@ -1091,6 +1099,11 @@ asn2fast : asn2fast.c asn2asn : asn2asn.c $(CC) -o asn2asn $(LDFLAGS) asn2asn.c $(LIB41) $(LIB6) $(LIB2) $(LIB1) $(OTHERLIBS) +# demo program (cleanasn) + +cleanasn : cleanasn.c + $(CC) -o cleanasn $(LDFLAGS) cleanasn.c $(LIB41) $(LIB23) $(LIB6) $(LIB2) $(LIB1) $(OTHERLIBS) + # demo program (fetchent) fetchent : fetchent.c diff --git a/make/msvc_prj/algo/blast/api/blastapi.dsp b/make/msvc_prj/algo/blast/api/blastapi.dsp index 16baa784..8da73d83 100644 --- a/make/msvc_prj/algo/blast/api/blastapi.dsp +++ b/make/msvc_prj/algo/blast/api/blastapi.dsp @@ -66,6 +66,10 @@ SOURCE=..\..\..\..\..\algo\blast\api\blast_input.c # End Source File # Begin Source File +SOURCE=..\..\..\..\..\algo\blast\api\blast_message_api.c +# End Source File +# Begin Source File + SOURCE=..\..\..\..\..\algo\blast\api\blast_mtlock.c # End Source File # Begin Source File @@ -94,15 +98,15 @@ SOURCE=..\..\..\..\..\algo\blast\api\blast_tabular.c # End Source File # Begin Source File -SOURCE=..\..\..\..\..\algo\blast\api\hspstream_queue.c +SOURCE=..\..\..\..\..\algo\blast\api\dust_filter.c # End Source File # Begin Source File -SOURCE=..\..\..\..\..\algo\blast\api\repeats_filter.c +SOURCE=..\..\..\..\..\algo\blast\api\hspstream_queue.c # End Source File # Begin Source File -SOURCE=..\..\..\..\..\algo\blast\api\dust_filter.c +SOURCE=..\..\..\..\..\algo\blast\api\repeats_filter.c # End Source File # Begin Source File @@ -134,6 +138,10 @@ SOURCE=..\..\..\..\..\algo\blast\api\blast_input.h # End Source File # Begin Source File +SOURCE=..\..\..\..\..\algo\blast\api\blast_message_api.h +# End Source File +# Begin Source File + SOURCE=..\..\..\..\..\algo\blast\api\blast_mtlock.h # End Source File # Begin Source File @@ -162,15 +170,15 @@ SOURCE=..\..\..\..\..\algo\blast\api\blast_tabular.h # End Source File # Begin Source File -SOURCE=..\..\..\..\..\algo\blast\api\hspstream_queue.h +SOURCE=..\..\..\..\..\algo\blast\api\dust_filter.h # End Source File # Begin Source File -SOURCE=..\..\..\..\..\algo\blast\api\repeats_filter.h +SOURCE=..\..\..\..\..\algo\blast\api\hspstream_queue.h # End Source File # Begin Source File -SOURCE=..\..\..\..\..\algo\blast\api\dust_filter.h +SOURCE=..\..\..\..\..\algo\blast\api\repeats_filter.h # End Source File # Begin Source File diff --git a/make/msvc_prj/algo/blast/composition_adjustment/blastcompadj.dsp b/make/msvc_prj/algo/blast/composition_adjustment/blastcompadj.dsp index 4214c7f9..a9b7b0f0 100644 --- a/make/msvc_prj/algo/blast/composition_adjustment/blastcompadj.dsp +++ b/make/msvc_prj/algo/blast/composition_adjustment/blastcompadj.dsp @@ -84,6 +84,10 @@ SOURCE=..\..\..\..\..\algo\blast\composition_adjustment\redo_alignment.c SOURCE=..\..\..\..\..\algo\blast\composition_adjustment\smith_waterman.c # End Source File +# Begin Source File + +SOURCE=..\..\..\..\..\algo\blast\composition_adjustment\unified_pvalues.c +# End Source File # End Group # Begin Group "Header Files" @@ -124,6 +128,10 @@ SOURCE=..\..\..\..\..\algo\blast\composition_adjustment\redo_alignment.h SOURCE=..\..\..\..\..\algo\blast\composition_adjustment\smith_waterman.h # End Source File +# Begin Source File + +SOURCE=..\..\..\..\..\algo\blast\composition_adjustment\unified_pvalues.h +# End Source File # End Group # End Target # End Project diff --git a/make/msvc_prj/algo/blast/core/blast.dsp b/make/msvc_prj/algo/blast/core/blast.dsp index e442a8e8..8811b144 100644 --- a/make/msvc_prj/algo/blast/core/blast.dsp +++ b/make/msvc_prj/algo/blast/core/blast.dsp @@ -228,6 +228,14 @@ SOURCE=..\..\..\..\..\algo\blast\core\blast_posit.c SOURCE=..\..\..\..\..\algo\blast\core\blast_program.c # End Source File +# Begin Source File + +SOURCE=..\..\..\..\..\algo\blast\core\blast_query_info.c +# End Source File +# Begin Source File + +SOURCE=..\..\..\..\..\algo\blast\core\blast_tune.c +# End Source File # End Group # Begin Group "Header Files" @@ -391,6 +399,14 @@ SOURCE=..\..\..\..\..\algo\blast\core\blast_posit.h # End Source File # Begin Source File +SOURCE=..\..\..\..\..\algo\blast\core\blast_query_info.h +# End Source File +# Begin Source File + +SOURCE=..\..\..\..\..\algo\blast\core\blast_tune.h +# End Source File +# Begin Source File + SOURCE=..\..\..\..\..\algo\blast\core\blast_program.h # End Source File # End Group diff --git a/make/msvc_prj/connect/connect.dsp b/make/msvc_prj/connect/connect.dsp index 0c6a9ea2..ab1becd2 100644 --- a/make/msvc_prj/connect/connect.dsp +++ b/make/msvc_prj/connect/connect.dsp @@ -139,6 +139,14 @@ SOURCE=..\..\..\connect\ncbi_lbsmd_stub.c # End Source File # Begin Source File +SOURCE=..\..\..\connect\ncbi_local.c +# End Source File +# Begin Source File + +SOURCE=..\..\..\connect\ncbi_local.h +# End Source File +# Begin Source File + SOURCE=..\..\..\connect\ncbi_memory_connector.c # End Source File # Begin Source File diff --git a/make/xCode/NCBI.xcode/project.pbxproj b/make/xCode/NCBI.xcode/project.pbxproj index aef18d95..9265b570 100644 --- a/make/xCode/NCBI.xcode/project.pbxproj +++ b/make/xCode/NCBI.xcode/project.pbxproj @@ -1288,12 +1288,6 @@ refType = 2; sourceTree = SOURCE_ROOT; }; - F012D92B06A5559200741D48 = { - fileRef = F012D92906A5559200741D48; - isa = PBXBuildFile; - settings = { - }; - }; F012D92906A5559200741D49 = { fileEncoding = 30; isa = PBXFileReference; @@ -1303,13 +1297,18 @@ refType = 2; sourceTree = SOURCE_ROOT; }; + F012D92B06A5559200741D48 = { + fileRef = F012D92906A5559200741D48; + isa = PBXBuildFile; + settings = { + }; + }; F012D92B06A5559200741D49 = { fileRef = F012D92906A5559200741D49; isa = PBXBuildFile; settings = { }; }; - F012D92E06A555D900741D48 = { fileEncoding = 30; isa = PBXFileReference; @@ -1370,6 +1369,15 @@ refType = 2; sourceTree = SOURCE_ROOT; }; + F012D93406A5568510741D48 = { + fileEncoding = 30; + isa = PBXFileReference; + lastKnownFileType = sourcecode.c.c; + name = ncbi_local.c; + path = ../../connect/ncbi_local.c; + refType = 2; + sourceTree = SOURCE_ROOT; + }; F012D93506A5568500741D48 = { fileEncoding = 30; isa = PBXFileReference; @@ -1526,6 +1534,12 @@ settings = { }; }; + F012D94706A5568510741D48 = { + fileRef = F012D93406A5568510741D48; + isa = PBXBuildFile; + settings = { + }; + }; F012D94806A5568500741D48 = { fileRef = F012D93506A5568500741D48; isa = PBXBuildFile; @@ -2420,6 +2434,7 @@ }; F01DC32F08D6FF2C002D34C9 = { children = ( + F08A59760A0907FA006DDAEB, F01DC33008D6FFCF002D34C9, F01DC33108D6FFCF002D34C9, F01DC33208D6FFCF002D34C9, @@ -2446,6 +2461,12 @@ refType = 2; sourceTree = SOURCE_ROOT; }; + F01DC33008D70038002D34C9 = { + fileRef = F01DC33428D6FFCF002D34C9; + isa = PBXBuildFile; + settings = { + }; + }; F01DC33108D6FFCF002D34C9 = { fileEncoding = 30; isa = PBXFileReference; @@ -2455,6 +2476,12 @@ refType = 2; sourceTree = SOURCE_ROOT; }; + F01DC33108D70038002D34C9 = { + fileRef = F01DC33438D6FFCF002D34C9; + isa = PBXBuildFile; + settings = { + }; + }; F01DC33208D6FFCF002D34C9 = { fileEncoding = 30; isa = PBXFileReference; @@ -2464,6 +2491,18 @@ refType = 2; sourceTree = SOURCE_ROOT; }; + F01DC33208D70038002D34C9 = { + fileRef = F01DC33448D6FFCF002D34C9; + isa = PBXBuildFile; + settings = { + }; + }; + F01DC33308D70038002D34C9 = { + fileRef = F01DC33458D6FFCF002D34C9; + isa = PBXBuildFile; + settings = { + }; + }; F01DC33408D6FFCF002D34C9 = { fileEncoding = 30; isa = PBXFileReference; @@ -2473,6 +2512,12 @@ refType = 2; sourceTree = SOURCE_ROOT; }; + F01DC33408D70038002D34C9 = { + fileRef = F01DC33468D6FFCF002D34C9; + isa = PBXBuildFile; + settings = { + }; + }; F01DC33418D6FFCF002D34C9 = { fileEncoding = 30; isa = PBXFileReference; @@ -2535,7 +2580,7 @@ path = ../../algo/blast/composition_adjustment/smith_waterman.c; refType = 2; sourceTree = SOURCE_ROOT; - }; + }; F01DC33508D6FFF0002D34C9 = { buildActionMask = 2147483647; files = ( @@ -2543,6 +2588,12 @@ isa = PBXHeadersBuildPhase; runOnlyForDeploymentPostprocessing = 0; }; + F01DC33508D70038002D34C9 = { + fileRef = F01DC33478D6FFCF002D34C9; + isa = PBXBuildFile; + settings = { + }; + }; F01DC33608D6FFF0002D34C9 = { buildActionMask = 2147483647; files = ( @@ -2551,12 +2602,13 @@ F01DC33C08D70037002D34C9, F01DC33D08D70038002D34C9, F01DC33F08D70038002D34C9, - F01DC33G08D70038002D34C9, - F01DC33H08D70038002D34C9, - F01DC33I08D70038002D34C9, - F01DC33J08D70038002D34C9, - F01DC33K08D70038002D34C9, - F01DC33L08D70038002D34C9, + F01DC33008D70038002D34C9, + F01DC33108D70038002D34C9, + F01DC33208D70038002D34C9, + F01DC33308D70038002D34C9, + F01DC33408D70038002D34C9, + F01DC33508D70038002D34C9, + F08A59770A0907FA006DDAEB, ); isa = PBXSourcesBuildPhase; runOnlyForDeploymentPostprocessing = 0; @@ -2632,42 +2684,6 @@ settings = { }; }; - F01DC33G08D70038002D34C9 = { - fileRef = F01DC33428D6FFCF002D34C9; - isa = PBXBuildFile; - settings = { - }; - }; - F01DC33H08D70038002D34C9 = { - fileRef = F01DC33438D6FFCF002D34C9; - isa = PBXBuildFile; - settings = { - }; - }; - F01DC33I08D70038002D34C9 = { - fileRef = F01DC33448D6FFCF002D34C9; - isa = PBXBuildFile; - settings = { - }; - }; - F01DC33J08D70038002D34C9 = { - fileRef = F01DC33458D6FFCF002D34C9; - isa = PBXBuildFile; - settings = { - }; - }; - F01DC33K08D70038002D34C9 = { - fileRef = F01DC33468D6FFCF002D34C9; - isa = PBXBuildFile; - settings = { - }; - }; - F01DC33L08D70038002D34C9 = { - fileRef = F01DC33478D6FFCF002D34C9; - isa = PBXBuildFile; - settings = { - }; - }; F01DC34208D7008D002D34C9 = { containerPortal = F0E3B02206A5513900F473CA; isa = PBXContainerItemProxy; @@ -2918,12 +2934,42 @@ target = F03C26B3088817C4006BFF22; targetProxy = F03C26BA0888182B006BFF22; }; + F03CED7409F7AFA000EB5378 = { + fileEncoding = 30; + isa = PBXFileReference; + lastKnownFileType = sourcecode.c.c; + name = blast_tune.c; + path = ../../algo/blast/core/blast_tune.c; + refType 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sourceTree = SOURCE_ROOT; + }; + F052068F09EC294C005AF35A = { + fileRef = F052068E09EC294C005AF35A; + isa = PBXBuildFile; + settings = { + }; + }; F067051E0783170B001506C1 = { fileEncoding = 30; isa = PBXFileReference; @@ -3783,6 +3844,21 @@ target = F0BC2DFF06AC3D1F00EC2330; targetProxy = F079CE1906CB9FCB00E2E865; }; + F08A59760A0907FA006DDAEB = { + fileEncoding = 30; + isa = PBXFileReference; + lastKnownFileType = sourcecode.c.c; + name = unified_pvalues.c; + path = ../../algo/blast/composition_adjustment/unified_pvalues.c; + refType = 2; + sourceTree = SOURCE_ROOT; + }; + F08A59770A0907FA006DDAEB = { + fileRef = F08A59760A0907FA006DDAEB; + isa = PBXBuildFile; + settings = { + }; + }; F094644F06AC0A1400DF5D77 = { fileEncoding = 30; isa = PBXFileReference; @@ -6227,6 +6303,8 @@ }; F095C4FC06AE8E5F00C0C74D = { children = ( + F03CED7409F7AFA000EB5378, + F052068E09EC294C005AF35A, 5EDE874E0823E6AF008F2E80, F06B098D07E74226004F1D7D, F06B098607E741DD004F1D7D, @@ -6323,6 +6401,8 @@ 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