diff options
108 files changed, 19854 insertions, 61 deletions
diff --git a/.gitignore b/.gitignore new file mode 100644 index 00000000..460a3226 --- /dev/null +++ b/.gitignore @@ -0,0 +1,6 @@ +bin +build +include +lib +shlib +*-stamp diff --git a/access/ent2api.c b/access/ent2api.c index b8828347..823c2d09 100644 --- a/access/ent2api.c +++ b/access/ent2api.c @@ -1273,7 +1273,7 @@ NLM_EXTERN CONN EntrezOpenConnection ( *arg = '\0'; return QUERY_OpenServiceQueryEx - (StringHasNoText (e2_service) ? "Entrez2" : e2_service, NULL, 30, arg); + (StringHasNoText (e2_service) ? "Entrez2s" : e2_service, NULL, 30, arg); } #ifdef OS_MAC diff --git a/api/sqnutil3.c b/api/sqnutil3.c index 553dd506..0f4cba63 100644 --- a/api/sqnutil3.c +++ b/api/sqnutil3.c @@ -33198,7 +33198,7 @@ ClickableItemPtr LIBCALL ClickableGlobalItemCategorize (ValNodePtr list, int ite cip->clickable_item_type = item_type; cip->description = (CharPtr) MemNew ( sizeof (Char) * (StringLen (fmt) + 15)); - sprintf (cip->description, fmt); + strcpy (cip->description, fmt); return cip; } return NULL; diff --git a/connect/ncbi_gnutls.c b/connect/ncbi_gnutls.c index 875163cd..d29136a8 100644 --- a/connect/ncbi_gnutls.c +++ b/connect/ncbi_gnutls.c @@ -585,6 +585,7 @@ static EIO_Status s_GnuTlsInit(FSSLPull pull, FSSLPush push) assert(!s_GnuTlsCredAnon); +#if 0 version = gnutls_check_version(0); if (strcasecmp(GNUTLS_VERSION, version) != 0) { CORE_LOGF(eLOG_Critical, @@ -592,6 +593,7 @@ static EIO_Status s_GnuTlsInit(FSSLPull pull, FSSLPush push) GNUTLS_VERSION, version)); assert(0); } +#endif val = ConnNetInfo_GetValue(0, "GNUTLS_LOGLEVEL", buf, sizeof(buf), 0); CORE_LOCK_READ; diff --git a/connect/ncbi_http_connector.c b/connect/ncbi_http_connector.c index 74afd7e6..d6adf318 100644 --- a/connect/ncbi_http_connector.c +++ b/connect/ncbi_http_connector.c @@ -240,8 +240,14 @@ static int/*bool*/ x_UnsafeRedirectOK(SHttpConnector* uuu) if (uuu->unsafe_redir == eDefault) { if (!(uuu->flags & fHTTP_UnsafeRedirects)) { char val[32]; + const char* dflt = NULL; + if (uuu->net_info->scheme == eURL_Https + && (strspn(uuu->net_info->host, "0123456789.") + == strlen(uuu->net_info->host))) { + dflt = "TRUE"; + } ConnNetInfo_GetValue(0, "HTTP_UNSAFE_REDIRECTS", - val, sizeof(val), 0); + val, sizeof(val), dflt); uuu->unsafe_redir = ConnNetInfo_Boolean(val) ? eOn : eOff; } else uuu->unsafe_redir = eOn; diff --git a/connect/ncbi_util.c b/connect/ncbi_util.c index d29ca350..f986ccdb 100644 --- a/connect/ncbi_util.c +++ b/connect/ncbi_util.c @@ -49,7 +49,9 @@ # ifndef NCBI_OS_SOLARIS # include <limits.h> # endif /*!NCBI_OS_SOLARIS*/ -# ifdef NCBI_OS_LINUX +# ifdef __MACH__ +# include <mach/vm_param.h> +# elif defined(NCBI_OS_LINUX) # include <sys/user.h> # endif /*NCBI_OS_LINUX*/ # include <pwd.h> diff --git a/connect/urlquery.c b/connect/urlquery.c index 626a15e1..da1dc619 100644 --- a/connect/urlquery.c +++ b/connect/urlquery.c @@ -128,7 +128,10 @@ NLM_EXTERN CONN QUERY_OpenUrlQuery ( } if ( host_port ) { net_info->port = host_port; + } else { + net_info->scheme = eURL_Https; } + StringNCpy_0 (net_info->path, host_path, sizeof (net_info->path)); if (StringDoesHaveText (arguments)) { StringNCpy_0 (net_info->args, arguments, sizeof (net_info->args)); diff --git a/corelib/ncbimain.c b/corelib/ncbimain.c index 3abcdf28..ca788e3e 100644 --- a/corelib/ncbimain.c +++ b/corelib/ncbimain.c @@ -67,6 +67,7 @@ #pragma segment NlmSegA #endif +extern Nlm_Int2 Nlm_Main(void) __attribute__((weak)); /***************************************************************************** * @@ -95,7 +96,12 @@ main(int argc, char *argv[]) /* Initialize connection library's logger, registry and lock */ CONNECT_Init(0); - retval = Nlm_Main(); + if (Nlm_Main) { + retval = Nlm_Main(); + } else { + ErrPost(0, 0, "Neither main nor Nlm_Main defined by program."); + retval = -1; + } NlmThreadJoinAll(); diff --git a/corelib/ncbitime.c b/corelib/ncbitime.c index 9c6ac630..f8964054 100644 --- a/corelib/ncbitime.c +++ b/corelib/ncbitime.c @@ -77,6 +77,7 @@ #include <ncbi.h> #include <ncbithr.h> #include <ncbiwin.h> +#include <stdlib.h> #ifdef OS_UNIX #include <sys/times.h> @@ -108,8 +109,18 @@ NLM_EXTERN time_t LIBCALL Nlm_GetSecs (void) *****************************************************************************/ NLM_EXTERN Nlm_Boolean LIBCALL Nlm_GetDayTime (Nlm_DayTimePtr dtp) { + /* This function honors the SOURCE_DATE_EPOCH specificatin + (https://reproducible-builds.org/specs/source-date-epoch/) */ + const char *sde = getenv("SOURCE_DATE_EPOCH"); #if (defined(SOLARIS_THREADS_AVAIL) || defined(POSIX_THREADS_AVAIL) || defined(WIN32)) && !defined(OS_UNIX_DARWIN) - time_t t = time( NULL ); + time_t t; + if (sde) { + t = strtoul(sde, NULL, 0); + if (t == 0) + return FALSE; + } else { + t = time( NULL ); + } #ifdef WIN32 static TNlmMutex localtime_lock; if (NlmMutexLockEx( &localtime_lock ) != 0) @@ -125,7 +136,13 @@ NLM_EXTERN Nlm_Boolean LIBCALL Nlm_GetDayTime (Nlm_DayTimePtr dtp) time_t ltime; struct tm *dt; Nlm_MemFill ((Nlm_VoidPtr) dtp, 0, sizeof(Nlm_DayTime)); - time(<ime); + if (sde) { + ltime = strtoul(sde, NULL, 0); + if (ltime == 0) + return FALSE; + } else { + time(<ime); + } if ((dt = localtime (<ime)) != NULL) { Nlm_MemCopy ((Nlm_VoidPtr) dtp, (Nlm_VoidPtr) dt, sizeof (struct tm)); diff --git a/debian/.gitignore b/debian/.gitignore new file mode 100644 index 00000000..afd21109 --- /dev/null +++ b/debian/.gitignore @@ -0,0 +1,15 @@ +*.xpm +*.debhelper +*.debhelper.log +*.substvars +files +libncbi6 +libvibrant6b +lib*-dbg +lib*-dev +ncbi-cn3d +ncbi-data +ncbi-rrna-data +ncbi-tools-bin +ncbi-tools-x11 +tmp diff --git a/debian/.ncbirc b/debian/.ncbirc new file mode 100644 index 00000000..4c7510d8 --- /dev/null +++ b/debian/.ncbirc @@ -0,0 +1,74 @@ +[LINKS] +CHANNELS=LINKS_FROM_MEDLINE, LINKS_FROM_SEQUENCE + +[SEQUENCE_CD_DESC] +MEDIA=ENTREZ_SEQ_CD + +[REFERENCE_FROM_NET] +MEDIA=ENTREZ_NET + +[SEQUENCE_FROM_NET] +MEDIA=ENTREZ_NET + +[LINKS_FROM_NET] +MEDIA=ENTREZ_NET +ENTR_SEQ__ENTR_SEQ=1 +ENTR_SEQ__ENTR_REF=1 +ENTR_REF__ENTR_SEQ=1 +ENTR_REF__ENTR_REF=1 + +[NCBI] +DATA=/usr/share/ncbi/data/ +MEDIA=ENTREZ_NET +AsnLoad= + +[ENTR_LINK] +CHANNELS=LINKS_FROM_NET + +[ENTR_REF] +CHANNELS=REFERENCE_FROM_NET + +[ENTR_SEQ] +CHANNELS=SEQUENCE_FROM_NET + +[ENTREZ] +SERVICES=ENTR_LINK, ENTR_REF, ENTR_SEQ + +[ENTREZ_NET] +TYPE=NET +SERVICE_NAME=Entrez +RESOURCE_NAME=Entrez +RESOURCE_TYPE=Entrez +SERV_VERS_MIN=1 +SERV_VERS_MAX=0 +RES_VERS_MIN=150 +RES_VERS_MAX=0 +FORMAL_NAME=Entrez Network Service + +[NET_SERV] +DISPATCHER=130.14.25.211 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+[SYSTEMFONT:22] +name=lucida bright +size=10 +style=0 +charset=0 +pitch=0 +family=0 + +[SYSTEMFONT:21] +name=helvetica +size=10 +style=0 +charset=0 +pitch=0 +family=0 + +[SYSTEMFONT:20] +name=helvetica +size=12 +style=1 +charset=0 +pitch=0 +family=0 + +[SYSTEMFONT:23] +name=lucidabright +size=10 +style=0 +charset=0 +pitch=0 +family=0 + +[SYSTEMFONT:24] +name=helvetica +size=12 +style=1 +charset=0 +pitch=0 +family=0 + + diff --git a/debian/Cn3D-3.0.desktop.in b/debian/Cn3D-3.0.desktop.in new file mode 100644 index 00000000..6ce35d6e --- /dev/null +++ b/debian/Cn3D-3.0.desktop.in @@ -0,0 +1,3 @@ +Name=Cn3D NCBI Database Viewer +GenericName=Database Viewer +Comment=View NCBI databases in 3D diff --git a/debian/NOTES b/debian/NOTES new file mode 100644 index 00000000..13ff53ea --- /dev/null +++ b/debian/NOTES @@ -0,0 +1,2 @@ +X apps should pull in -lvibrant BEFORE -lvibgif to avoid problematic +shadowing. diff --git a/debian/Psequin.desktop.in b/debian/Psequin.desktop.in new file mode 100644 index 00000000..1e3a45b7 --- /dev/null +++ b/debian/Psequin.desktop.in @@ -0,0 +1,3 @@ +Name=Sequin DNA Sequence Submission Tool +GenericName=Sequence Submission Tool +Comment=Submit DNA sequences to the GenBank, EMBL, and DDBJ databases diff --git a/debian/README.test b/debian/README.test new file mode 100644 index 00000000..f600d738 --- /dev/null +++ b/debian/README.test @@ -0,0 +1,8 @@ +Notes on how this package can be tested. +_______________________________________ + +This package can be tested by execution + + bash run-unit-test + +in order to confirm its integrity. diff --git a/debian/TODO b/debian/TODO new file mode 100644 index 00000000..dc3c8bcf --- /dev/null +++ b/debian/TODO @@ -0,0 +1,2 @@ +* Document sequin's options properly. +* Split blast.1 back up, preferably semi-automatically? diff --git a/debian/bkgd.gif b/debian/bkgd.gif Binary files differnew file mode 100644 index 00000000..0313d7e1 --- /dev/null +++ b/debian/bkgd.gif diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 00000000..add95719 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,1264 @@ +ncbi-tools6 (6.1.20170106+dfsg1-1) UNRELEASED; urgency=medium + + * Belatedly repackage without data/UniVec.*, some portions of which + turned out to be non-free (with copyright held by Invitrogen + Corporation, which requires a license for commercial use thereof.) + (NOT RELEASED YET.) + + -- Aaron M. Ucko <ucko@debian.org> Sun, 28 Jul 2019 21:30:56 -0400 + +ncbi-tools6 (6.1.20170106-7) unstable; urgency=medium + + [ Steffen Möller ] + * debian/upstream/metadata: Add metadata for Cn3D. + + [ Aaron M. Ucko ] + * Split Cn3D(-3.0) out into a new ncbi-cn3d binary package; update + debian/upstream/metadata accordingly. + * debian/upstream/metadata: Quote title because it contains a colon. + + -- Aaron M. Ucko <ucko@debian.org> Sun, 24 Feb 2019 16:35:37 -0500 + +ncbi-tools6 (6.1.20170106-6) unstable; urgency=medium + + * debian/rules: Find indirectly needed libraries via -rpath-link rather + than LD_LIBRARY_PATH; the -rpath-link approach is generally saner, and + in particular has a decent shot at fully fixing cross-building. + + -- Aaron M. Ucko <ucko@debian.org> Thu, 27 Dec 2018 22:39:09 -0500 + +ncbi-tools6 (6.1.20170106-5) unstable; urgency=medium + + [ Andreas Tille ] + * Improve cross building: Don't force the build architecture compiler + (Thanks for the patch to Helmut Grohne) + Closes: #908353 + * cme fix dpkg-control + + [ Aaron M. Ucko ] + * debian/control: libvibrant6b Recommends: sensible-utils (no longer + guaranteed present, per #871260). + * Standards-Version: 4.3.0 (already compliant). + + -- Aaron M. Ucko <ucko@debian.org> Mon, 24 Dec 2018 23:40:58 -0500 + +ncbi-tools6 (6.1.20170106-4) unstable; urgency=medium + + * debian/compat: Advance to Debhelper 11. + * debian/control: + - Mark *-data reshuffling with Breaks, not just Replaces. (Closes: #902364.) + - Build-Depends: Advance to debhelper (>= 11~). + * debian/copyright: Fix years (packaging through 2018, upstream through 2017). + + -- Aaron M. Ucko <ucko@debian.org> Mon, 25 Jun 2018 21:36:10 -0400 + +ncbi-tools6 (6.1.20170106-3) unstable; urgency=medium + + [ Liubov Chuprikova ] + * Added autopkgtest for ncbi-tools-bin. + Closes: #879619 + + [ Aaron M. Ucko ] + * debian/{*.gif,ncbi2.css}: Add local copies of NCBI resources used by HTML + docs. + * debian/control: + - Repoint Vcs-* at salsa.debian.org. + - Standards-Version: 4.1.4 (already compliant). + - Rules-Requires-Root: no (confirmed safe). + * debian/{libncbi6,ncbi-tools-x11}.docs: Install resources from debian/ as + needed. + * debian/source/format: Set to 3.0 (quilt) to accommodate binary test data. + * debian/source/include-binaries: List debian/tests/test-data/nc0305.aso.gz + and (individually) debian/*.gif. + * debian/source/options: single-debian-patch (tracking changes purely + with git for now). + * debian/source/patch-header: "Combined patches from git." + * demo/{findspl,taxblast_main}.c: Call SOCK_SetupSSL (accidentally missed + earlier). + * doc/{dispatcher,firewall}.html: Patch to use (newly supplied) local + resources, addressing a generic privacy breach caught by Lintian. + * make/make{demo,net}.unx: Link findspl and taxblast against $(LIBTLS) + and $(GNUTLS_LIBS). + + -- Aaron M. Ucko <ucko@debian.org> Sun, 24 Jun 2018 12:06:15 -0400 + +ncbi-tools6 (6.1.20170106-2) unstable; urgency=medium + + * debian/control: Correctly version ncbi-tools-bin's Breaks/Replaces + on blast2 over taxblast move. (Closes: #854329.) + + -- Aaron M. Ucko <ucko@debian.org> Sun, 05 Feb 2017 21:40:38 -0500 + +ncbi-tools6 (6.1.20170106-1) unstable; urgency=medium + + * New upstream release (after all). + * debian/*.symbols: Update accordingly. + * doc/man/cleanasn.1: Update accordingly. + * debian/copyright: Update years. + + -- Aaron M. Ucko <ucko@debian.org> Mon, 09 Jan 2017 22:35:15 -0500 + +ncbi-tools6 (6.1.20160908-2) unstable; urgency=medium + + * Stop building the transitional blast2 package (taken over by ncbi-blast+) + and retire its remaining vestiges (the bibliograpy and autopkgtest setup). + * connect/ncbi_util.c: Fix a FTBFS on hurd-i386 by conditionally using a + more appropriate header for PAGE_SIZE (<mach/vm_param.h>). + * Reinstate taxblast (now part of ncbi-tools-bin, and correctly documented + as a postprocessing tool), accidentally dropped with the rest of blast2. + + -- Aaron M. Ucko <ucko@debian.org> Tue, 06 Dec 2016 18:37:19 -0500 + +ncbi-tools6 (6.1.20160908-1) unstable; urgency=medium + + [ Andreas Tille ] + * (Final) new upstream release, incorporating most Debian changes, adding + HTTPS support, and desupporting legacy BLAST. (Closes: #846477, #821075.) + * cme fix dpkg-control + * drop -dbg packages since these will be created automatically + * Fixed watch file (thanks to Eriberto <eriberto@eriberto.pro.br>) + * DEP5 + + [ Aaron M. Ucko ] + * Reinstate direct upstream changes lost in merge. + * Ensure that apps that could potentially hit the network can use HTTPS. + (Don't bother with anything that only supports the old Entrez1 service.) + * Allow Entrez2 over HTTPS by switching to the Entrez2s service, making + HTTPS connections by default, and allowing HTTPS POST redirections from + raw IP addresses (which NCBI's certificates don't cover). + * Let GCC take care of setting __DATE__ and __TIME__ per SOURCE_DATE_EPOCH. + * api/sqnutil3.c: Substitute strcpy for sprintf with no extra + arguments, which our hardening flags disallow. + * connect/ncbi_gnutls.c: Suppress strict version check. + * debian/*.symbols: Update for new release. + * debian/{blast2.*,control,rules}, make/makedemo.unx: Turn blast2 into an + architecture-independent transitional package for ncbi-blast+-legacy. + (Retire blastcl3, which is obsolete.) + * debian/{compat,control}: Advance to Debhelper compat level 10. + * debian/control: Drop unversioned B-D-I on dpkg-dev left behind by cme. + * debian/{control,rules}: + - Build against GNU TLS. + - Retune ncbi-data/ncbi-rrna-data split. + * debian/libncbi6(-dev).install, make/makeshlib.unx: Account for new + libconnssl library. + * debian/rules: + - Drop override_dh_strip-arch target now that -dbg packages are gone. + - Fix typo in name of override_dh_makeshlibs-arch target from #806084. + * debian/{rules,.gitignore}: Stop generating legacy menu files for + non-interactive tools (already retired in favor of XDG desktop files + for true graphical applications). + * debian/rules, make/make{demo,net}.unx: Substitute -Wl,--as-needed + for manual linkage cleanups. + * demo/tbl2asn.c: Complain about date only if failing for other reasons. + (Closes: #821075.) + * doc/man/blastcl3.1: Fix a stray reference to retired programs. + + -- Aaron M. Ucko <ucko@debian.org> Sun, 04 Dec 2016 21:33:55 -0500 + +ncbi-tools6 (6.1.20120620-12) unstable; urgency=medium + + * Team upload. + * Autopkgtest added. + + -- Canberk Koç <canberkkoc@gmail.com> Sat, 20 Aug 2016 10:20:38 +0300 + +ncbi-tools6 (6.1.20120620-11) unstable; urgency=medium + + * Team upload. + * Add support for SOURCE_DATE_EPOCH, making packages building BLAST + indexes reproducible (Closes: #834139) + + -- Sascha Steinbiss <satta@debian.org> Fri, 12 Aug 2016 20:29:37 +0000 + +ncbi-tools6 (6.1.20120620-10) unstable; urgency=medium + + * debian/rules: chmod +x private scripts in the targets that use them. + (Doing so in override_dh_auto_build-arch broke indep-only builds.) + + -- Aaron M. Ucko <ucko@debian.org> Thu, 10 Dec 2015 01:19:59 -0500 + +ncbi-tools6 (6.1.20120620-9) unstable; urgency=medium + + * debian/control: Split most of Build-Depends into Build-Depends-Arch. + * debian/makemenu: Elide menu entries, and potentially entire menu + files, when .desktop(.in) files cover the same apps. (See #741573.) + * debian/rules: + - Fix and streamline builds covering only the architecture-independent + (*-data) packages. (Closes: #806084.) + - Arrange to define BUILD_{DATE,TIME} based on the last changelog entry. + - clean: chmod -x private scripts, for compatibility with dgit. + * debian/sbtedit.desktop.in: Add a menu entry for sbtedit, accidentally + missed earlier. + * {demo,sequin}/*.c: Favor BUILD_{DATE,TIME} over __DATE__ and __TIME__ + for the sake of reproducibility. + * doc/man/sbtedit.1: Fix some minor typos. + + -- Aaron M. Ucko <ucko@debian.org> Wed, 09 Dec 2015 23:52:45 -0500 + +ncbi-tools6 (6.1.20120620-8) unstable; urgency=low + + [ Aaron M. Ucko ] + * corelib/ncbimisc.c (MergeStringArray): Ensure all return paths + explicitly return a value, as Clang reasonably requires. + * debian/control: Formally update Standards-Version (3.9.6) and Vcs-Browser. + + [ James McCoy ] + * Move debian/upstream to debian/upstream/metadata + + -- Aaron M. Ucko <ucko@debian.org> Wed, 08 Oct 2014 22:26:33 -0400 + +ncbi-tools6 (6.1.20120620-7) unstable; urgency=low + + * debian/rules: Use find -perm /..., not deprecated +.... (Closes: #724777.) + * debian/.gitignore: Belatedly update for switch to libvibrant6b. + + -- Aaron M. Ucko <ucko@debian.org> Tue, 01 Oct 2013 10:58:03 -0400 + +ncbi-tools6 (6.1.20120620-6) unstable; urgency=low + + * debian/installman: Eliminate for $var qw(...) syntax that broke with + Perl 5.18. (Closes: #722913.) + + -- Aaron M. Ucko <ucko@debian.org> Sat, 14 Sep 2013 23:16:12 -0400 + +ncbi-tools6 (6.1.20120620-5) unstable; urgency=low + + * demo/makeset.c: If unable to open an input ASN.1 file, report an error + and exit rather than trying to work with a NULL pointer and crashing. + (Thanks to Alexandre Rebert and the Mayhem Team at Carnegie Mellon + University's Cylab for revealing this possibility.) + * debian/control: Modernize libvibrant6b-dbg's short description. + + -- Aaron M. Ucko <ucko@debian.org> Thu, 27 Jun 2013 22:23:19 -0400 + +ncbi-tools6 (6.1.20120620-4) unstable; urgency=low + + * Rename libvibrant6(-dbg) to libvibrant6b(-dbg), as the release team + doesn't condone ever reusing binary package names. + * blast2: Conflict with unofficial ncbi-blast packages. (LP: #658240.) + * Rebuild in a clean environment. (Closes: #714070.) + + -- Aaron M. Ucko <ucko@debian.org> Tue, 25 Jun 2013 22:00:52 -0400 + +ncbi-tools6 (6.1.20120620-3) unstable; urgency=low + + * Migrate from Lesstif to Motif, which is (finally!) free these days. + - Substitute libmotif-dev for liblesstif-dev in Build-Depends and + libvibrant6-dev's Depends. + - Rename libvibrant6a(-dbg) back to libvibrant6(-dbg). + * Standards-Version: 3.9.4. (Already compliant.) + + -- Aaron M. Ucko <ucko@debian.org> Tue, 28 May 2013 22:26:01 -0400 + +ncbi-tools6 (6.1.20120620-2) unstable; urgency=low + + [ Andreas Tille ] + * debian/upstream: Strings containing ': ' need to be quoted. + + -- Aaron M. Ucko <ucko@debian.org> Sun, 24 Jun 2012 22:54:29 -0400 + +ncbi-tools6 (6.1.20120620-1) unstable; urgency=low + + * New upstream release, just in time for Wheezy. + * debian/*.symbols: update accordingly. + * api/txalign.c: turn one more sprintf into a (nominally safer) snprintf. + * make/makenet.unx: link asnmacro against libblastapi now that it actually + needs to. + * debian/*-dev.install: make sure to install all headers collectively. + * doc/man/*.1: update for new release. + * debian/ncbi-tools-bin.examples: new, covering scripts from demo/. + + -- Aaron M. Ucko <ucko@debian.org> Sun, 24 Jun 2012 22:15:27 -0400 + +ncbi-tools6 (6.1.20110713-6) unstable; urgency=low + + * debian/rules: Tweak -fPIC -> -fPIE substitution to accommodate platforms + (kFreeBSD, and some Linux architectures) lacking PIE support. + + -- Aaron M. Ucko <ucko@debian.org> Fri, 01 Jun 2012 21:02:58 -0400 + +ncbi-tools6 (6.1.20110713-5) unstable; urgency=low + + [ Andreas Tille ] + * debian/upstream: Added citation information + + [ Aaron M. Ucko ] + * debian/control: + - Build-Depends-Indep: dpkg-dev (>= 1.16.2~) for dpkg-deb -Sextreme. + - Repoint Vcs-* at anonscm.debian.org (vs. git.debian.org). + * debian/rules: + - Enable full hardening flags, contriving to substitute -fPIC for + -fPIE as necessary. + - Build ncbi-rrna-data with -Sextreme rather than hacking XZ_OPT. + * make/makeshlb.unx: Honor externally supplied (hardening) LDFLAGS. + + -- Aaron M. Ucko <ucko@debian.org> Fri, 01 Jun 2012 18:36:37 -0400 + +ncbi-tools6 (6.1.20110713-4) unstable; urgency=low + + * debian/control: + - Give ncbi-rrna-data a pre-dependency on dpkg (>= 1.15.6) for xz support. + - Wrap and sort (build) dependencies. + - Drop specific build dependency on libpng12-dev, even as a preferred + libpng-dev provider. (Closes: #662442.) + - Require debhelper (>= 9), which has been final for some time. + - Standards-Version: 3.9.3. (No changes needed.) + * debian/{libncbi6,ncbi-tools-bin}.install: sort as well. + + -- Aaron M. Ucko <ucko@debian.org> Thu, 08 Mar 2012 19:14:20 -0500 + +ncbi-tools6 (6.1.20110713-3) unstable; urgency=low + + * debian/{libncbi6-dev,ncbi-tools-bin}.install: move /usr/bin/asntool + and /usr/bin/errhdr from libncbi6-dev to ncbi-tools-bin so that the + former can properly be Multi-Arch: same. (Closes: #646970.) + * debian/libncbi6-dev.NEWS.debian: note the above move. + * debian/control: adjust descriptions and relationships accordingly. + * debian/{libncbi6-dev,ncbi-tools-bin}.lintian-overrides: update accordingly. + * debian/rules: + - Don't try to give libncbi6-dev manpages or menu entries. + - Compress the giant ncbi-rrna-data package with xz -7e (the sweet spot). + + -- Aaron M. Ucko <ucko@debian.org> Sun, 30 Oct 2011 20:52:57 -0400 + +ncbi-tools6 (6.1.20110713-2) unstable; urgency=low + + * api/alignmgr2.c, api/pgppop.c, api/txalign.c, desktop/seqpanel.c, + tools/spidey.c: avoid calling printf and the like with non-constant + strings, as caught by -Werror=format-security. (Closes: #643444.) + + -- Aaron M. Ucko <ucko@debian.org> Sat, 01 Oct 2011 22:08:13 -0400 + +ncbi-tools6 (6.1.20110713-1) unstable; urgency=low + + * New upstream release. + * debian/*.symbols: update accordingly. + * make/makeshlb.unx: link libcn3dOGL.so against -lm for sqrt. + * doc/man/*.1: update for new release. + * debian/rules: + - (VIB): add asnmacro, as upstream takes care to publish binaries thereof. + - Retire obsolete multiarch-unaware checks for libpthread. + - Fully modernize Debhelper usage; in particular, transition to overrides. + * debian/compat: advance to 9 per rules modernization. + * debian/ncbi-tools-bin.install: add asnmacro. + * make/makenet.unx: link asnmacro only against libraries it directly needs. + * doc/man/asnmacro.1: give asnmacro a man page. + * doc/man/Psequin.1: list it in SEE ALSO. + * network/id1arch/idfetch.c: revert redundant change (from #295110). + * Convert to multiarch. + - debian/rules: Install libraries (and ncbithr.o) to multiarch directories. + - debian/lib*.install: match multiarch library paths. + - debian/control: + + Build-Depends: debhelper (>= 8.1.3~), implying a recent dpkg-dev. + + Set Multi-Arch: as appropriate across the board, and specify + Pre-Depends: ${misc:Pre-Depends} for runtime libraries. + * debian/*.lintian-overrides: drop leading slashes for Lintian 2.5.x. + * debian/control: Standards-Version: 3.9.2 (already compliant). + + -- Aaron M. Ucko <ucko@debian.org> Mon, 05 Sep 2011 18:55:02 -0400 + +ncbi-tools6 (6.1.20100808-3) unstable; urgency=low + + * vibrant/shim3d.c: support libpng 1.5+, per Nobuhiro Iwamatsu's most + helpful patch. (Closes: #636006.) + + -- Aaron M. Ucko <ucko@debian.org> Sat, 30 Jul 2011 11:51:21 -0400 + +ncbi-tools6 (6.1.20100808-2) unstable; urgency=low + + * Reupload to unstable following the release of Debian 6.0 (squeeze). + + -- Aaron M. Ucko <ucko@debian.org> Sun, 13 Feb 2011 15:07:22 -0500 + +ncbi-tools6 (6.1.20100808-1) experimental; urgency=low + + * New upstream release; the upgrade to BLAST 2.2.24 (from 2.2.21) should + address a formatdb regression. (LP: #586219.) + * Uploading to experimental because squeeze is frozen. + * debian/rules (install-indep-stamp): adapt to new ncbilogo.ico contents. + * debian/lib{ncbi6,vibrant6a}.symbols: update for latest release. + * doc/man/*.1: update for latest release. + [plus the cleanups backported to unstable in 6.1.20090809-2] + + -- Aaron M. Ucko <ucko@debian.org> Fri, 03 Sep 2010 17:43:17 -0400 + +ncbi-tools6 (6.1.20090809-2) unstable; urgency=low + + * debian/rules + - Clean up compilation settings; in particular, use dpkg-buildflags rather + than relying on dpkg-buildpackage to have set CFLAGS appropriately. + - (clean): restore expected empty directories if necessary, + for compatibility with VCSes (notably git) that don't track them. + - (VIB): add asndisc, as upstream takes care to publish binaries thereof. + * debian/ncbi-tools6.install: likewise add asndisc. + * (debian/).gitignore: Ignore content generated during build. + * make/makenet.unx: don't link asndisc against extraneous libraries. + * doc/man/asndisc.1: throw together a man page for asndisc. + * doc/man/cleanasn.1: fix SEE ALSO formatting. + * debian/control: + - bump dpkg-dev build-dep to >= 1.15.7 for dpkg-buildflags. + - Standards-Version: 3.9.1 (already compliant). + - note switch to git-mediated Debian-Med team maintenance. + + -- Aaron M. Ucko <ucko@debian.org> Wed, 13 Oct 2010 20:23:37 -0400 + +ncbi-tools6 (6.1.20090809-1) unstable; urgency=low + + * New upstream release. + * debian/libncbi6.symbols: update accordingly. + * debian/control: clean up obsolete or redundant relationship declarations. + + -- Aaron M. Ucko <ucko@debian.org> Tue, 11 Aug 2009 22:03:47 -0400 + +ncbi-tools6 (6.1.20090719-1) unstable; urgency=low + + * New upstream release. + * debian/lib{ncbi6,vibrant6a}.symbols: update accordingly. + * doc/man/*.1: update accordingly as well. + * debian/control: declare compliance with Policy 3.8.2 (no changes needed). + + -- Aaron M. Ucko <ucko@debian.org> Sat, 01 Aug 2009 21:19:49 -0400 + +ncbi-tools6 (6.1.20090301-1) unstable; urgency=low + + * New upstream release; uploading to unstable now that lenny is out. + * debian/lib{ncbi6,vibrant6a}.symbols: update accordingly. + * doc/man/*.1: update accordingly as well. + * debian/control: place lib*-dbg in the new debug section, per the + current override file. + * debian/control: declare compliance with Policy 3.8.1 (no changes needed). + * api/aliread.c: merge in fix (from 6.1.20080302-4) to undefined use of + sprintf caught by Kees Cook's scan. + * debian/watch: belatedly update regex to recognize releases like the + previous one ([6.1.]20081116a). + + -- Aaron M. Ucko <ucko@debian.org> Thu, 19 Mar 2009 10:17:26 -0400 + +ncbi-tools6 (6.1.20081116a-2) experimental; urgency=low + + * debian/control: per Lintian's advice, depend on ${misc:Depends} across + the board, in case Debhelper ever populates it. + * debian/{control,rules}: split newly added large BLAST databases into a + new ncbi-rrna-data package to keep ncbi-data to a reasonable size. + + -- Aaron M. Ucko <ucko@debian.org> Wed, 17 Dec 2008 19:45:48 -0500 + +ncbi-tools6 (6.1.20081116a-1) experimental; urgency=low + + * New upstream release. + * debian/lib{ncbi6,vibrant6a}.symbols: update accordingly. + * debian/rules: resync VIB with makedis.csh, adding the new app taxblast. + * debian/{blast2,ncbi-tools-bin}.install: add the new apps taxblast and + subfuse, respectively. + * debian/libncbi6-dev.install: add the new headers ace{read,rdapi}.h. + * debian/ncbi-tools-x11.{postinst,prerm}: run update-alternatives + without an explicit path, per Lintian. + * debian/rules (clean): drop stray references to CDBS's debian/stamp-*. + * make/make{demo,net}.unx: link asn2gb, debruijn, subfuse, and taxblast + correctly. + * doc/fwd_check.sh: use mktemp rather than predictable names (formally + CVE-2008-5149). + * doc/man/*.1: update for latest release; document new apps. + + -- Aaron M. Ucko <ucko@debian.org> Sat, 13 Dec 2008 18:25:17 -0500 + +ncbi-tools6 (6.1.20080302-4) unstable; urgency=medium + + * doc/fwd_check.sh: use mktemp rather than predictable names (formally + CVE-2008-5149). + * api/aliread.c: fix undefined use of sprintf caught by Kees Cook's scan. + + -- Aaron M. Ucko <ucko@debian.org> Sun, 28 Dec 2008 20:31:00 -0500 + +ncbi-tools6 (6.1.20080302-3) unstable; urgency=high + + * tools/readdb.c: enable madvise()-based code on all glibc (hence all + Debian) systems, not just Linux. (Closes: #490437.) + + -- Aaron M. Ucko <ucko@debian.org> Mon, 14 Jul 2008 19:43:15 -0400 + +ncbi-tools6 (6.1.20080302-2) unstable; urgency=low + + * Migrate from CDBS to Debhelper 7 (along with dpkg-dev >= 1.14.17), + replacing some files with equivalent symlinks. + * debian/makemenu: stop generating obsolete linda overrides. + * Declare compliance with Policy 3.8.0. (No changes needed.) + + -- Aaron M. Ucko <ucko@debian.org> Wed, 11 Jun 2008 19:08:50 -0400 + +ncbi-tools6 (6.1.20080302-1) unstable; urgency=low + + * New upstream release + * debian/lib{ncbi6,vibrant6a}.symbols: update and clean up. + * debian/lib{ncbi,vibrant}6-dev.install: ship new headers. + * debian/ncbi-tools-bin.docs, doc/man/tbl2asn.1: belatedly ship + tbl2asn.txt, and restore tbl2asn.1's reference thereto. + * doc/man/*.1: correct usage of ' and -. + * doc/man/{blast,cleanasn,nps2gps,tbl2asn}.1: resync with help output. + * debian/control: tighten dependencies between binary packages. + * debian/{control,rules}: require cdbs 0.4.51; drop workaround for #462130. + * debian/{control,rules,*.override}: rename Lintian overrides to + $pkg.lintian-overrides and employ dh_lintian from debhelper (>= 6.0.7) + in lieu of custom logic. + * debian/*.doc-base*: modernize (and correct) section assignments per + doc-base 0.8.10: science -> Science/Biology, net -> System/Administration. + * debian/makemenu: drop obsolete Encoding key from generated .desktop files. + + -- Aaron M. Ucko <ucko@debian.org> Wed, 19 Mar 2008 19:42:00 -0400 + +ncbi-tools6 (6.1.20070822-5) unstable; urgency=low + + * debian/{control,rules}, make/make{all,demo,net}.unx: adjust makefiles + for compatibility with GNU Make 3.81, and switch back from pmake. + * debian/{compat,control,rules}: advance to Debhelper 6, with a + temporary workaround for CDBS bug #462130. + * debian/lib{ncbi6,vibrant6a}.symbols: new, to allow looser reverse + dependencies. + * debian/watch: move unsupported downloadurlmangle option to a comment + so that uscan actually works. + * debian/control: clean up crufty relations, assuming a build + environment of at least etch (stable) and an installation environment + of at least sarge (oldstable). + + -- Aaron M. Ucko <ucko@debian.org> Wed, 30 Jan 2008 21:56:22 -0500 + +ncbi-tools6 (6.1.20070822-4) unstable; urgency=low + + * debian/control: enable ${shlibs:Depends} for libncbi6-dev, which + contains a couple of utilities in addition to its other contents. + * make/make{demo,net,shlb}.unx: ensure that every shipped executable and + shared library links against everything it uses directly and nothing + else, per dpkg-shlibdeps's new warnings. + * debian/watch: reformat, as the old version didn't actually have the + desired semantics (which uscan doesn't actually support AFAICT :-/). + * doc/man/tbl2asn.1: drop obsolete reference to tbl2asn.txt. + * debian/control: give blast2 its own Homepage field. + * debian/libncbi6.dirs: dropped, not actually pointful. + * debian/{installman,ncbi-tools-x11.links}: make symlinks automatically. + * debian/control: declare compliance with Policy 3.7.3. + + -- Aaron M. Ucko <ucko@debian.org> Fri, 18 Jan 2008 19:43:04 -0500 + +ncbi-tools6 (6.1.20070822-3) unstable; urgency=low + + * debian/control: fix typo (ncbi-tools-data for ncbi-data) that left + ncbi-tools-x11 uninstallable. :-/ + + -- Aaron M. Ucko <ucko@debian.org> Tue, 30 Oct 2007 19:14:18 -0400 + +ncbi-tools6 (6.1.20070822-2) unstable; urgency=low + + * debian/control: set Homepage. + * debian/{control,makemenu,rules,*.desktop.in}: supply XDG desktop + entries and icons for inherently graphical apps. (Closes: #448031.) + * debian/{man.unused,old-blast-man,shlibs.local}: remove (obsolete + cruft; shlibs.local contained only comments anyway.) + + -- Aaron M. Ucko <ucko@debian.org> Fri, 26 Oct 2007 19:27:01 -0400 + +ncbi-tools6 (6.1.20070822-1) unstable; urgency=low + + * New upstream release. + * vibrant/vib{main,wndws.c}: restore sane behavior in key corner cases + (no Nlm_Main, no DISPLAY). + * debian/{control,rules}: ncbilogo.ico now contains multiple variants; + use icotool from icoutils to extract the right one to convert. + * debian/libncbi6-dev.install: handle two new "unclaimed" headers. + * debian/ncbi-tools-bin.install: drop getfeat (dead), entrcmd (obsolete). + * debian/ncbi-tools-x11.install: drop netentcf (dead), Nentrez (obsolete). + * debian/ncbi-tools-x11.links: repoint entrez at entrez2 (vs. Nentrez). + * debian/rules: stop building Nentrez; update list of built but unwanted + executables. + * debian/makemenu: fix section assignments per menu policy 2.1.35. + * Update man pages. + + -- Aaron M. Ucko <ucko@debian.org> Mon, 08 Oct 2007 16:42:46 -0400 + +ncbi-tools6 (6.1.20061015-2) unstable; urgency=low + + * debian/installman: don't append .gz to *.htm(l) files' paths, as + dh_compress (rightly) excludes them by default. (Closes: #412651.) + * debian/makemenu: correct vibrate's package requirement to libvibrant6a + (closes: #429955, #429956); generate appropriate linda overrides (for + command-not-exist), another "problem" with the setup. + * debian/libvibrant6a.override (new): suppress lintian warnings about + the package name not precisely matching any SONAME. + + -- Aaron M. Ucko <ucko@debian.org> Fri, 29 Jun 2007 13:29:17 -0400 + +ncbi-tools6 (6.1.20061015-1) unstable; urgency=low + + * New upstream release. + * Don't bother linking against indirectly used system libraries. + * Update man pages. + + -- Aaron M. Ucko <ucko@debian.org> Sun, 22 Oct 2006 19:32:02 -0400 + +ncbi-tools6 (6.1.20060507-3) unstable; urgency=low + + * Drop transitional packages, which are now entirely redundant thanks to + the binNMU of clustalx for i386 earlier this June. (Closes: #322059.) + * Migrate to lesstif2, renaming libvibrant6(-dbg) to libvibrant6a(-dbg) + to avoid any possibility of version skew. [Lesstif lacks versioned + symbols, though admittedly so does Vibrant.] (Closes: #374233.) + * Make debian/stamp-setup a dependency of common-configure-indep as well + as common-configure-arch so that building via an immediate call to + "fakeroot debian/rules binary" works properly, per #373971. + * Explicitly build depend on modular versions of *all* relevant X + libraries, per the other issue in #373971 (and to ensure that the arm + autobuilder's failure mode *really* can't recur). + + -- Aaron M. Ucko <ucko@debian.org> Sat, 24 Jun 2006 09:28:43 -0400 + +ncbi-tools6 (6.1.20060507-2) unstable; urgency=low + + * Version the build-dependency on libxmu-dev to (>= 1:1) to ensure that + we *can* actually drop -I/usr/X11R6/include and -L/usr/X11R6/lib, + avoiding the failure mode observed on the arm autobuilder. + * Further increase cdbs's minimum required version to the brand new + 0.4.40, which automatically sets DEB_DBG_PACKAGE_* appropriately. + + -- Aaron M. Ucko <ucko@debian.org> Mon, 29 May 2006 20:42:28 -0400 + +ncbi-tools6 (6.1.20060507-1) unstable; urgency=low + + * New upstream release (issued on May 26, but from older sources). + * Drop obsolete -I/usr/X11R6/include and -L/usr/X11R6/lib flags. + * Rework inter-package relationships with the help of dpkg-dev 1.13.19. + * Migrate remaining shared library support files (including vibrate) to + ncbi-data, as they're conveniently all architecture-independent. + * Add cleanasn (new) to the list of applications to build, and give it a + man page. + * Update existing man pages. + * Increase the cdbs requirement to 0.4.39-0.1, and drop workarounds for + (some?) older versions. + * Switch to debhelper compatibility level 5, with its reworked -dbg + package handling. + * Standards-Version: 3.7.2. + + -- Aaron M. Ucko <ucko@debian.org> Mon, 29 May 2006 16:50:27 -0400 + +ncbi-tools6 (6.1.20060301-1) unstable; urgency=low + + * New (relatively, anyway ;-P) upstream release. + * (Build-)depend directly on libgl(u)1-mesa-dev by default (but keep + the alternate [build-]dependencies on virtual packages, of course). + * Add insdseqget to the list of applications to build. + * Stop installing wwwblast.h, which is private to code we don't even + build. + * Update man pages (and add one for insdseqget, forked from gbseqget's). + + -- Aaron M. Ucko <ucko@debian.org> Sun, 16 Apr 2006 12:52:44 -0400 + +ncbi-tools6 (6.1.20051206-1) unstable; urgency=low + + * New upstream release. + * Temporarily switch to pmake (added to Build-Depends) for upstream's + makefiles, as GNU make 3.81.b4 gets mysteriously confused when trying + to build from them (but, oddly, only when invoked from debian/rules). + * Add "new" blastall_old executable to the blast2 package. + * Reshuffle documents slightly, and make sure to register all top-level + HTML documents with doc-base. + * Loosen libncbi6's dependency on ncbi-data to accommodate binary-only + NMUs. + + -- Aaron M. Ucko <ucko@debian.org> Thu, 12 Jan 2006 18:50:27 -0500 + +ncbi-tools6 (6.1.20050828-1) unstable; urgency=low + + * New upstream release + - Adds two new programs: sbtedit (in ncbi-tools-x11) and trna2sap + (in ncbi-tools-bin). + * Drop obsolete alternative (build-)dependencies on ancient versions of + xlibs-dev, and silly build-dependency on libglu1-xorg | libglu1c2, and + resync libvibrant-dev's dependencies properly. + * Add man pages for the new programs, and clean up and update others as + needed. + + -- Aaron M. Ucko <ucko@debian.org> Fri, 4 Nov 2005 16:41:18 -0500 + +ncbi-tools6 (6.1.20050605-2) unstable; urgency=low + + * Adjust default libglu-dev to libglu1-xorg-dev to avoid confusing the + autobuilders. + + -- Aaron M. Ucko <ucko@debian.org> Fri, 15 Jul 2005 23:37:06 -0400 + +ncbi-tools6 (6.1.20050605-1) unstable; urgency=low + + * New upstream release. + * Enable asn2asn via VIB rather than unnecessarily modifying + makedemo.unx, and add (and document) nps2gps and trna2tbl along + the way. + * Make sure to build with libglu1c2 for the C++ transition. + * Don't set DEB_DH_SHLIBDEPS_ARGS; it's not necessary with current + versions of dpkg and cdbs, and -L isn't actually additive anyway. + * Bump standards-version to 3.6.2 (no changes needed). + + -- Aaron M. Ucko <ucko@debian.org> Fri, 15 Jul 2005 19:03:40 -0400 + +ncbi-tools6 (6.1.20050429-1) unstable; urgency=low + + * New upstream release. + * Add and document asn2all, asn2fsa, asnval, and gene2xml, even though + makedis.csh still omits them. + * Make Nentrez and Psequin available under the saner names entrez and + sequin. + * Tweak debian/rules to better handle "draft" builds from subversion. + + -- Aaron M. Ucko <ucko@debian.org> Tue, 17 May 2005 17:43:14 -0400 + +ncbi-tools6 (6.1.20041020-3) unstable; urgency=low + + * Fix FTBFS under GCC 4.0 caused by inconsistent use of "static" on + functions. (Closes: #295110.) + * Add a watch file, now that we can. (Upstream's layout needs version=3.) + + -- Aaron M. Ucko <ucko@debian.org> Sun, 27 Mar 2005 12:00:15 -0500 + +ncbi-tools6 (6.1.20041020-2) unstable; urgency=low + + * Add spidey to ncbi-tools-bin by Steffen Moeller's request, and + incorporate some documentation he supplied for it. (Closes: #291895.) + + -- Aaron M. Ucko <ucko@debian.org> Tue, 25 Jan 2005 18:16:49 -0500 + +ncbi-tools6 (6.1.20041020-1) unstable; urgency=low + + * New upstream release; debian/* resynched as necessary. + - Fixes Vibrant invisible text bug! + * Take advantage of menu 2.1.8's support for multiple required packages. + + -- Aaron M. Ucko <ucko@debian.org> Mon, 1 Nov 2004 20:07:56 -0500 + +ncbi-tools6 (6.1.20040616-1) unstable; urgency=low + + * New upstream release. + * debian/blast2.docs: adjusted for new arrangement (a separate + source-tree directory full of HTML files). + * debian/{control,lib*-dbg.install,rules}: switch to new-style -dbg + packages containing just the stripped-out symbols. + * debian/{installman,ncbi-tools-bin.install,rules}: upstream has dropped + f(asta)merge. + + -- Aaron M. Ucko <ucko@debian.org> Sat, 26 Jun 2004 00:18:09 -0400 + +ncbi-tools6 (6.1.20040505-1) unstable; urgency=low + + * New upstream release. + * debian/rules: + - set BLAST_VERSION from demo/.BLAST_VERSION rather than parsing + tools/blastdef.h. + + -- Aaron M. Ucko <ucko@debian.org> Sat, 15 May 2004 17:49:45 -0400 + +ncbi-tools6 (6.1.20040204-3) unstable; urgency=low + + * Update X-related (build-)dependencies per the changes in 4.3. + * Reunite the Vibrant packages, with libvibrant.so.6 and + libncbicn3d.so.6 always pointing at the OpenGL-enabled versions, now + that xlibmesa-gl merely suggests the heavyweight packages containing + acceleration modules. + * As such, tighten shlibdeps for libvibrant6 to avoid possible trouble. + + -- Aaron M. Ucko <ucko@debian.org> Wed, 10 Mar 2004 18:48:26 -0500 + +ncbi-tools6 (6.1.20040204-2) unstable; urgency=low + + * debian/{libncbi6-dev,rules}: account for new include subdirectories. + + -- Aaron M. Ucko <ucko@debian.org> Sun, 8 Feb 2004 22:42:12 -0500 + +ncbi-tools6 (6.1.20040204-1) unstable; urgency=low + + * New upstream release. + * debian/copyright: expand public domain notice to full length. + * debian/*.install: install newly added files. + * debian/rules: + - supply appropriate -L args to dh_shlibdeps (accidentally lost when + converting to CDBS). + - various minor cleanups. + * demo/debruijn.c: fix fencepost error. + * desktop/bspview.c, vibrant/netscape.c: launch sensible-browser rather + than netscape. + * doc/man/blast.1: document new blast2 executable. + * doc/man/debruijn.1: new, based on help output. + * make/makeshlb.unx: add dependency info for libblast(api). + + -- Aaron M. Ucko <ucko@debian.org> Fri, 6 Feb 2004 22:03:25 -0500 + +ncbi-tools6 (6.1.20031028-1) unstable; urgency=low + + * New upstream release. + * debian/blast2.docs: follow README.* -> *.txt renaming. + * debian/libncbi6-dev.install: add new headers scoremat.h and wwwblast.h. + * debian/installman: new; factored out of debian/rules, and enhanced + to look in doc/man before debian/man and tweak pages as needed. + * debian/instdoc: removed (not used since conversion to CDBS). + * debian/man/*: remove pages now committed upstream. + * debian/{ncbi-tools-bin.files,rules}: remove cdscan (obsolete). + * debian/rules: run new debian/installman script. + * debian/vibrant/vibwndws.c: add a weak declaration of Nlm_Main + (and code to complain if it's not satisfied) here too. + + -- Aaron M. Ucko <ucko@debian.org> Mon, 10 Nov 2003 22:51:03 -0500 + +ncbi-tools6 (6.1.20030421-6) unstable; urgency=low + + * debian/control: Fix libncbi6-dbg to depend directly on libncbi6 + rather than on the transitional ncbi-tools6 package. + * debian/{control,lib*-dbg.install,rules}: While I'm at it, move + unstripped libraries from /usr/lib/ncbi-tools-dbg to /usr/lib/debug. + + -- Aaron M. Ucko <ucko@debian.org> Fri, 17 Oct 2003 23:24:32 -0400 + +ncbi-tools6 (6.1.20030421-5) unstable; urgency=low + + * debian/control: + - Downgrade oldlibs packages (ncbi-tools6 and vibrant6) to priority + extra, per override. + - Bump CDBS build-dependency to >= 0.4.12. + - Drop redundant entries from build-depends-indep. + * debian/libncbi6.doc-base: Actually supply the documentation + directory's current name. (Closes: #215398.) + * debian/rules: Take advantage of CDBS 0.4.12's support for -dbg packages. + * corelib/ncbimain.c: Use an __attribute__((weak)) declaration for + Nlm_Main rather than a dummy implementation + #pragma weak. + * vibrant/shim3d.c: Likewise for Cn3D_GetCurrentOGLData. + + -- Aaron M. Ucko <ucko@debian.org> Sun, 12 Oct 2003 11:18:21 -0400 + +ncbi-tools6 (6.1.20030421-4) unstable; urgency=low + + * debian/rules: compile with -mieee on Alpha to fix platform-specific + FPEs. (Closes: #127224). + * doc/README.bls: updated to latest upstream version (which includes the + missing release notes for 2.2.6). + + -- Aaron M. Ucko <ucko@debian.org> Tue, 2 Sep 2003 11:13:09 -0400 + +ncbi-tools6 (6.1.20030421-3) unstable; urgency=low + + * debian/control: + - Bump Standards-Version to 3.6.1 (no changes needed). + - blast2, ncbi-tools-bin: Suggest libvibrant6 rather than vibrant6. + - libvibrant6-gl{,-dev}, ncbi-tools-x11: lower priority to extra due + to conflicts with libvibrant6-nogl, which is optional. + + -- Aaron M. Ucko <ucko@debian.org> Fri, 22 Aug 2003 20:21:56 -0400 + +ncbi-tools6 (6.1.20030421-2) unstable; urgency=low + + * The "overdue cleanup" release. + * general (debian/*, make/makeshlb.unx): + - Rename library packages to start with "lib"; ncbi-tools6 and vibrant6 + are now dummy forwarding packages. + - Move libvibgif.so.6 to libncbi6, since it's independent of X. + - Split GL and non-GL variants of libvibrant and libncbicn3d into + separate packages. + - Standardize on the network version of the Entrez 1 access library + (libncbiNacc), if only for the sake of other libraries that need any + of the three variants; the CDROM-only version's not so useful + nowadays, and the combo version seems to misfire without the CDs. + Note that all three remain available in static form. + - Handle the circular relationship between libncbiNacc and libnetentr by + linking the PIC version of libnetentr.a into libncbiNacc.so and making + libnetentr.so.6 merely another link to libncbiNacc.so.6. (Kludge.) + - Set up proper shared library dependencies, now that it is possible to + do so uniquely. + - Now compliant with Policy 3.6.0. + * connect/ncbi_http_connector.c: Don't half-close sockets after sending + headers, as we can't always successfully read from them afterwards + (due to broken firewalls?). + * debian/rules: + - Switch to CDBS, despite upstream's funky build system. + - Stop imposing the obsolete menu icon color restriction. + + -- Aaron M. Ucko <ucko@debian.org> Mon, 28 Jul 2003 20:11:26 -0400 + +ncbi-tools6 (6.1.20030421-1) unstable; urgency=low + + * New upstream release. + * api/aliread.c: avoid char vs. EOF comparisons. + * debian/{blast2,ncbi-tools6-dev}.docs: package new upstream docs. + * debian/control: + - Change section to devel. + - Bump standards version to 3.5.9 (already compliant). + - Change preferred libpng-dev to libpng12-dev (12-0-dev went away). + * debian/man/Psequin.1: sequin seems to take options after all; + (very roughly) document them. + * debian/man/{asn2gb,blast,fastacmd,gbseqget,gil2bin,tbl2asn}.1: + - Update to reflect current help output. + * debian/rules: add bl2seq to VIB so we still actually build it. + * demo/gil2bin.c: #include <blast.h> for GetGisFromFile prototype. + + -- Aaron M. Ucko <ucko@debian.org> Sun, 27 Apr 2003 12:41:48 -0400 + +ncbi-tools6 (6.1.20021213-5) unstable; urgency=low + + * debian/control: Build-Conflict on xlibmesa-glu-dev (<< 4.2.1-6), and + drop corresponding workarounds. (See #178310 and #178374.) + + -- Aaron M. Ucko <ucko@debian.org> Tue, 25 Feb 2003 23:44:39 -0500 + +ncbi-tools6 (6.1.20021213-4) unstable; urgency=low + + * Oops, add a dependency on xlibmesa-gl-dev|libgl-dev because + xlibmesa-glu-dev doesn't seem to depend on it.... + * Likewise for xlibmesa3-glu | libglu1, due to #178310. + * Still no (intentional) changes in actual content relative to + 6.1.20021213-2. + + -- Aaron M. Ucko <ucko@debian.org> Fri, 24 Jan 2003 22:07:51 -0500 + +ncbi-tools6 (6.1.20021213-3) unstable; urgency=low + + * Update OpenGL deps to xlibmesa-glu-dev|libglu-dev. + * Hack debian/rules to give blast2 a more meaningful version number. + * Finally rename *.files to *.install and change dh_movefiles -a to + dh_install -a --autodest --list-missing --sourcedir=debian/tmp. (Drop + ncbi-data.files in favor of installing directly into debian/ncbi-data.) + * Add lintian overrides for menu-icon-missing warnings. + + -- Aaron M. Ucko <ucko@debian.org> Fri, 24 Jan 2003 14:43:59 -0500 + +ncbi-tools6 (6.1.20021213-2) unstable; urgency=low + + * Address char-signedness issues. (Closes: #177392) + + -- Aaron M. Ucko <ucko@debian.org> Tue, 21 Jan 2003 21:04:50 -0500 + +ncbi-tools6 (6.1.20021213-1) unstable; urgency=low + + * New upstream release. (Man pages updated.) + * Change preferred libpng-dev to libpng12-0-dev rather than libpng3-dev + (which is a dummy package these days). + * Abandon plans for switching to lesstif2, as Vibrant seems to work + better with lesstif1. + + -- Aaron M. Ucko <ucko@debian.org> Tue, 17 Dec 2002 22:34:26 -0500 + +ncbi-tools6 (6.1.20021119-1) unstable; urgency=low + + * New upstream release. (Man pages updated accordingly.) + * Update for policy 3.5.8: move menu entries to Apps/Science per #162812. + * Indicate options in man pages with \- rather than - per #159872. + * Move icons from /usr/X11R6/include/X11/pixmaps to /usr/share/pixmaps. + + -- Aaron M. Ucko <ucko@debian.org> Thu, 21 Nov 2002 09:05:38 -0500 + +ncbi-tools6 (6.1.20020828-2) unstable; urgency=low + + * Try to use madvise only if MADV_NORMAL is actually defined. + + -- Aaron M. Ucko <ucko@debian.org> Thu, 5 Sep 2002 10:49:01 -0400 + +ncbi-tools6 (6.1.20020828-1) unstable; urgency=low + + * New upstream release. + * Update man pages based on current help output. + * Go to standards version 3.5.7 (support "noopt" rather than "debug" in + DEB_BUILD_OPTIONS). + * Strictly speaking, the ABI changes should necessitate a new soname, + but no external Debian packages seem to use the affected interfaces, + so I'll be lazy. You may need to rebuild any local binaries you have. + (Conflict with old versions of our binary packages, though.) + + -- Aaron M. Ucko <ucko@debian.org> Wed, 4 Sep 2002 20:30:31 -0400 + +ncbi-tools6 (6.1.20020426-5) unstable; urgency=low + + * Add a second hyphen before (no-)whole-archive to fix the ARM build. + + -- Aaron M. Ucko <ucko@debian.org> Mon, 26 Aug 2002 18:41:08 -0400 + +ncbi-tools6 (6.1.20020426-4) unstable; urgency=low + + * Partially migrate to debhelper v4. + * Pave the way for C++ toolkit packages (in progress): + - Provide a weak default definition of Nlm_Main so that our shared + libncbi doesn't bite applications which supply their own main(). + - Rename Cn3D to Cn3D-3.0 and register it as an alternative for Cn3D. + * Move to libpng3 (only affects applications). + * Rename fmerge to fastamerge to resolve conflict with fhist. + (Closes: #155791) + + -- Aaron M. Ucko <ucko@debian.org> Fri, 23 Aug 2002 22:34:17 -0400 + +ncbi-tools6 (6.1.20020426-3) unstable; urgency=low + + * Remove getseq (which isn't terribly useful) to resolve conflict with + hmmer. (Closes: #147793) + + -- Aaron M. Ucko <ucko@debian.org> Thu, 23 May 2002 21:20:47 -0400 + +ncbi-tools6 (6.1.20020426-2) unstable; urgency=low + + * Enable large-file support; please let me know if this turns out to + break anything. (Closes: #144531) + * Don't build ncbithr.o or link against -lpthread unless that library + actually exists; should help on non-Linux ports. + + -- Aaron M. Ucko <ucko@debian.org> Thu, 9 May 2002 19:26:35 -0400 + +ncbi-tools6 (6.1.20020426-1) unstable; urgency=low + + * New upstream release; apparently fixes formatdb segfault on PowerPC + (closes: #144783). + * Some existing interfaces have changed, but not enough to justify + bumping the soname; if binaries built against older revisions of the + toolkit no longer work, try rebuilding them. (I don't believe this + affects any other Debian packages.) + * Updated man pages based on current help output. + * Patched both versions (regular and Vibrant) of common argument- + processing code to honor "--help" (closes: #144785). + + -- Aaron M. Ucko <ucko@debian.org> Sun, 28 Apr 2002 18:30:43 -0400 + +ncbi-tools6 (6.1.20011220a-2) unstable; urgency=low + + * Whoops, ncbi-data should replace pre-split versions of ncbi-tools6. + + -- Aaron M. Ucko <ucko@debian.org> Thu, 4 Apr 2002 22:13:09 -0500 + +ncbi-tools6 (6.1.20011220a-1) unstable; urgency=low + + * New upstream release, mostly appears to address some megablast issues. + * Deal with some 64-bit-cleanliness issues. + * Partially fix Cn3D lossage in #127224. (It still crashes, but later.) + * Fix copymat lossage with trailing spaces and improve its error + messages (closes: #138933). + * Split architecture-independent files into new ncbi-data package. + * Fix path to libXm.so.1 in vibrate. + + -- Aaron M. Ucko <ucko@debian.org> Sun, 31 Mar 2002 10:33:49 -0500 + +ncbi-tools6 (6.1.20011220-2) unstable; urgency=low + + * Update manpages based on current help output. + * Fix typo in description (ASN1 -> ASN.1). + * Use $(CC) rather than gcc in makeshlb.unx. + * Build asn2asn. + + -- Aaron M. Ucko <ucko@debian.org> Fri, 28 Dec 2001 13:48:20 -0500 + +ncbi-tools6 (6.1.20011220-1) unstable; urgency=low + + * New upstream release (Closes: #126625). + * Bug #31724 is probably fixed by now, and too vague to do much of + anything with anyway. (Closes: #31724; please supply useful details + if reopening.) + * Tweak rules so that the shlibs dependency is always + (>= [latest.upstream.version]-1). + + -- Aaron M. Ucko <ucko@debian.org> Thu, 27 Dec 2001 21:08:17 -0500 + +ncbi-tools6 (6.1.20010709-9) unstable; urgency=low + + * Menu seems to be broken on some architectures, so drop build + dependency and add a copy of cmap.xpm to debian/. + * Slightly rework treatment of icons in debian/rules. + * Change "c-shell" to "tcsh|c-shell" in build-deps to address buildd + warnings. + * Add lintian overrides for new menu file. + + -- Aaron M. Ucko <ucko@debian.org> Thu, 20 Dec 2001 11:47:53 -0500 + +ncbi-tools6 (6.1.20010709-8) unstable; urgency=low + + * Change priority of debugging libraries to extra, per the override file. + * Add menu file for ncbi-tools6-dev (asntool) and menu icons. + * Add build-depends on ImageMagick and menu for icon creation. + * Clean up internal script for creating menu files. + + -- Aaron M. Ucko <ucko@debian.org> Tue, 18 Dec 2001 21:12:41 -0500 + +ncbi-tools6 (6.1.20010709-7) unstable; urgency=low + + * Change section of debugging libraries from libs to devel. + + -- Aaron M. Ucko <ucko@debian.org> Sun, 18 Nov 2001 20:36:31 -0500 + +ncbi-tools6 (6.1.20010709-6) unstable; urgency=low + + * Introduce debugging libraries. (Closes: #38354). + + -- Aaron M. Ucko <ucko@debian.org> Mon, 12 Nov 2001 12:08:44 -0500 + +ncbi-tools6 (6.1.20010709-5) unstable; urgency=low + + * Sigh, the change in -4 intended to fix arm broke it instead; revert to + __arm__. Where'd I put that paper bag? ;-) + * Allow #cpu(...) and #machine(...) for all platforms. + * Downgrade "unknown platform" to a warning; the code mostly doesn't + care which PROC_XXX macro, if any, gets defined (and when it does, may + read too much from it; see below). + * Fix uses of PROC_XXX not to assume that MIPS -> IRIX or HPPA -> HP/UX. + * Use appropriate sysconf to get processor count. + + -- Aaron M. Ucko <ucko@debian.org> Tue, 16 Oct 2001 13:26:49 -0400 + +ncbi-tools6 (6.1.20010709-4) unstable; urgency=low + + * Also fix test for m68k. Why can't the macros be more consistent? + * Check everything else against the GCC sources and find that __arm__ + should be arm. + * That should be all of these; apologies for the inconvenience. + + -- Aaron M. Ucko <ucko@debian.org> Sat, 13 Oct 2001 14:50:03 -0400 + +ncbi-tools6 (6.1.20010709-3) unstable; urgency=low + + * Fix test for powerpc in ncbilcl.lnx. (Check for two likely + definitions to be extra safe. ;-)) + + -- Aaron M. Ucko <ucko@debian.org> Fri, 12 Oct 2001 10:50:39 -0400 + +ncbi-tools6 (6.1.20010709-2) unstable; urgency=low + + * Fix problems caught by autobuilders: + * Rewrite clean rule to avoid mkdir. (Closes: #115103) + * Add build-dependency on c-shell (ugh) for ln-if-absent. + * + * Whoops, my previous sweep missed two (old, minor) bugs on + ncbi-tools6-dev: + * 31724: I suspect I can close this by now, but don't have a whole lot + of information to go on; could somebody on an Alpha investigate? + * 38354: Debugging libraries would be a good idea, but I'm holding off + until autobuilds succeed because adding more binary packages + introduces ftpmaster wait. + * + * Keep shlib requirement at >= 6.1.20010709-1, because this version + doesn't change anything relevant. + * Add HTTP URL for HTML SDK docs. + * Optimize out blast.REAL build. + + -- Aaron M. Ucko <ucko@debian.org> Wed, 10 Oct 2001 18:42:44 -0400 + +ncbi-tools6 (6.1.20010709-1) unstable; urgency=low + + * New upstream version; adds more apps, and includes newer BLAST (2.2.1 + rather than 2.0.9). (Closes: #33451, #37966, #37967, #47369, #101168) + * Repackaged largely from scratch, acknowledging the convoluted nature + of the upstream build system. + * Put ncbi-tools6 and vibrant6 in section "libs", where they belong, + rather than "devel" (already correct in override file). + * Used the same form of my name in the control file and the changelog so + that katie doesn't think I'm making NMUs. + * Acknowledged my own last "NMU" (Closes: #100247, #103550, #104365) + * Enabled thread support for appropriate applications. (Closes: #35216) + * Added automatic fallback to /etc/ncbi if NCBI not set in the + environment; did away with no-longer-necessary wrappers. + * New binary packages for apps: ncbi-tools-bin and ncbi-tools-x11. + * Moved data to /usr/share/ncbi/data, since it's architecture-independent. + * Closes all existing bugs. Let's see how long that lasts... + and no fair filing silly reports just to thwart me. ;-) + * Dropped text version of old SDK docs in favor of pointer to online HTML + version. + * Don't link against Vibrant unnecessarily; instead, provide a wrapper + script (vibrate) with the same net effect. + * Added menu entries (using vibrate for apps it benefits). + * Added Lintian overrides to deal with cross-package menu entries. + * Registered with doc-base. + * Clean by Lintian 1.20.15, modulo the aforementioned overrides. + + -- Aaron M. Ucko <ucko@debian.org> Sat, 6 Oct 2001 10:51:36 -0400 + +ncbi-tools6 (6.0.2-3) unstable; urgency=low + + * Adopted. (Closes: #100247) + * Acknowledge previous NMUs. (Closes: #103550, #104365) + * Stop installing /usr/share/doc/ncbi-tools6/NCBI/fa2htgs/updateHtgsDoc; + it was causing a Lintian error (executable file under /usr/share/doc) + and not useful as-is anyway (referring to paths only valid on NCBI + systems). + * Honor DEB_BUILD_OPTIONS, and build without -g by default. + * Above change should suffice to bump standards version to 3.5.6. Yay! + * Now clean by Lintian 1.20.14.1. + + -- Aaron M. Ucko <ucko@debian.org> Thu, 6 Sep 2001 11:05:49 -0400 + +ncbi-tools6 (6.0.2-2.2) unstable; urgency=low + + * NMU + * The previous maintainer has resigned. Setting maintainer to Debian QA + Group <packages@qa.debian.org>. + * debian/ncbi-tools6-dev.README.debian: add final newline to shut diff up + * debian/control: tidied up package descriptions + * debian/rules: use dh_shlibdeps -l instead of LD_LIBRARY_PATH + * debian/{shlibs,vibrant6.shlibs}: while we're at it, why don't we have + some shlibs files to go with these shared library packages, like they + taught us in freshman year at Debian University + * Thanks to the above two fixes... (Closes: #104365) + + -- Dr. Branden Robinson <branden@debian.org> Sat, 11 Aug 2001 20:57:17 -0500 + +ncbi-tools6 (6.0.2-2.1) unstable; urgency=low + + * Non-maintainer upload. + * va_arg promotes shorts to ints. This is flagged as an error by + gcc >= 2.96. Closes: #103550 + + -- LaMont Jones <lamont@debian.org> Mon, 9 Jul 2001 21:39:34 -0600 + +ncbi-tools6 (6.0.2-2) unstable; urgency=low + + * Adopted by new maintainer; closes: #92794, #92796, #92798, #48176 + * Corrected typo in manpage for formatdb; closes: #38483 + * Removed self-conflict of vibrant-dev; closes: #49712 + * Changed the double installation of the copyright file by ncbi-tools6 and + ncbi-tools6-dev into the same doc directory (and added a README.Debian in + /usr/share/doc/ncbi-tools6-dev); closes: #51122, #77541, #56643 + * Added the installation of README.blast. + * Updated to newer standards version and added Build-Depends. + * Added debhelper token to vibrant6.preinst to fix lintian warning. + * Moved blast2 from section misc to science, because it is a tool that + is exclusively useful for molecular biologists. + + -- Dr. Guenter Bechly <gbechly@debian.org> Fri, 13 Apr 2001 15:12:10 +0200 + +ncbi-tools6 (6.0.2-1.1) unstable; urgency=low + + * NMU. + * Recompiled against lesstif1. Closes: #48176 + + -- Adam Heath <doogie@debian.org> Mon, 25 Oct 1999 07:05:49 -0500 + +ncbi-tools6 (6.0.2-1) unstable; urgency=low + + * New upstream release (includes Blast 2.0.8). + Addresses #33451 but does not solve it completely. + * Manual page. Closes #30227 + * Add the vibrant package + * Proper symlinks in -dev packages. Closes #31619 + + -- Stephane Bortzmeyer <bortzmeyer@debian.org> Mon, 15 Feb 1999 12:55:01 +0100 + +ncbi-tools6 (6.0.1-1) unstable; urgency=low + + * New upstream release + * Add the blast package + + -- Stephane Bortzmeyer <bortzmeyer@debian.org> Thu, 12 Nov 1998 15:55:02 +0100 + +ncbi-tools6 (6.0-3) frozen; urgency=low + + * Changes in the dependencies in control. Closes #28610 + * Change in rules: the source package was broken and uncompilable. Closes #28978 + + -- Stephane Bortzmeyer <bortzmeyer@debian.org> Wed, 28 Oct 1998 09:16:49 +0100 + +ncbi-tools6 (6.0-2) unstable; urgency=low + + * Various lintian warnings suppressed + * Not all files are copied in /usr/lib/ncbi/data, to save space + + -- Stephane Bortzmeyer <bortzmeyer@debian.org> Mon, 26 Oct 1998 15:59:25 +0100 + +ncbi-tools6 (6.0-1) unstable; urgency=low + + * Initial Release. First public release. + + -- Stephane Bortzmeyer <bortzmeyer@debian.org> Tue, 22 Sep 1998 17:23:12 +0200 + + diff --git a/debian/compat b/debian/compat new file mode 100644 index 00000000..b4de3947 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +11 diff --git a/debian/control b/debian/control new file mode 100644 index 00000000..b1622514 --- /dev/null +++ b/debian/control @@ -0,0 +1,163 @@ +Source: ncbi-tools6 +Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> +Uploaders: Aaron M. Ucko <ucko@debian.org> +Section: libdevel +Priority: optional +Build-Depends: debhelper (>= 11~) +Build-Depends-Arch: csh | c-shell, + libglu1-mesa-dev | libglu-dev, + libgnutls28-dev | gnutls-dev, + libmotif-dev, + libpcre3-dev, + libpng-dev, + libxmu-dev +Build-Depends-Indep: icoutils, + imagemagick +Standards-Version: 4.3.0 +Vcs-Browser: https://salsa.debian.org/med-team/ncbi-tools6 +Vcs-Git: https://salsa.debian.org/med-team/ncbi-tools6.git +Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/ +Rules-Requires-Root: no + +Package: libncbi6 +Architecture: any +Multi-Arch: same +Section: libs +Depends: ncbi-data (= ${source:Version}), + ${misc:Depends}, + ${shlibs:Depends} +Pre-Depends: ${misc:Pre-Depends} +Description: NCBI libraries for biology applications + The NCBI Software Development Toolkit was developed for the production and + distribution of GenBank, Entrez, BLAST, and related services by NCBI. It + allows you to read and write NCBI ASN.1 files, builds Blast or Entrez, etc. + +Package: libncbi6-dev +Architecture: any +Multi-Arch: same +Depends: libncbi6 (= ${binary:Version}), + ${misc:Depends} +Recommends: ncbi-tools-bin +Provides: ncbi-tools-dev +Description: NCBI libraries for biology applications (development files) + This package supplies development versions of NCBI's non-graphical C + libraries, along with the corresponding header files. + +Package: ncbi-data +Architecture: all +Multi-Arch: foreign +Section: libs +Depends: ${misc:Depends} +Breaks: ncbi-rrna-data (<< 6.1.20160908) +Replaces: ncbi-rrna-data (<< 6.1.20160908) +Description: Platform-independent data for the NCBI toolkit + This package contains support files needed by the NCBI toolkit on all + platforms. + +Package: ncbi-rrna-data +Architecture: all +Multi-Arch: foreign +Section: science +Depends: ncbi-data, + ${misc:Depends} +Recommends: ncbi-blast+ +Breaks: ncbi-data (<< 6.1.20160908) +Replaces: ncbi-data (<< 6.1.20160908) +Description: large rRNA BLAST databases distributed with the NCBI toolkit + This package contains some ribosomal RNA BLAST databases distributed + as part of the NCBI C Toolkit that are too large and specialized to + include in ncbi-data. Specifically, it contains the databases + Combined16SrRNA, LSURef_93.fasta, LSU_nomito_nochloro_noplastid, + SSURef_93.fasta, and SSU_nomito_nochloro_noplastid, along with alias + files to facilitate searching some of them in conjunction with + databases included in ncbi-data. + +Package: ncbi-tools-bin +Architecture: any +Multi-Arch: foreign +Section: science +Depends: libncbi6 (<< ${source:Upstream-Version}.1), + libncbi6 (>= ${source:Upstream-Version}), + ${misc:Depends}, + ${shlibs:Depends} +Suggests: libvibrant6b, + ncbi-blast+, + ncbi-cn3d, + ncbi-tools-x11 +Breaks: blast2 (<< 1:2.2.26.20160908) +Replaces: blast2 (<< 1:2.2.26.20160908) +Description: NCBI libraries for biology applications (text-based utilities) + This package includes various utilities distributed with the NCBI C SDK, + including the development tools asntool and errhdr (formerly of + libncbi6-dev). None of the programs in this package require X; you can + find the X-based utilities in the ncbi-tools-x11 package. BLAST and + related tools now come from a separate source base, corresponding to the + ncbi-blast+ and ncbi-blast+-legacy packages. + +Package: ncbi-tools-x11 +Architecture: any +Multi-Arch: foreign +Section: science +Depends: libncbi6 (<< ${source:Upstream-Version}.1), + libncbi6 (>= ${source:Upstream-Version}), + libvibrant6b (<< ${source:Upstream-Version}.1), + libvibrant6b (>= ${source:Upstream-Version}), + ncbi-cn3d, + ${misc:Depends}, + ${shlibs:Depends} +Suggests: ncbi-tools-bin +Description: NCBI libraries for biology applications (X-based utilities) + This package includes some X-based utilities distributed with the + NCBI C SDK: Network Entrez, Sequin, ddv, and udv. These programs + are not part of ncbi-tools-bin because they depend on several + additional library packages. + +Package: ncbi-cn3d +Architecture: any +Multi-Arch: foreign +Section: science +Depends: libncbi6 (<< ${source:Upstream-Version}.1), + libncbi6 (>= ${source:Upstream-Version}), + libvibrant6b (<< ${source:Upstream-Version}.1), + libvibrant6b (>= ${source:Upstream-Version}), + ${misc:Depends}, + ${shlibs:Depends} +Suggests: ncbi-tools-bin, + ncbi-tools-x11 +Breaks: ncbi-tools-x11 (<< 6.1.20170106-7~) +Replaces: ncbi-tools-x11 (<< 6.1.20170106-7~) +Description: 3-dimensional viewer for biological molecules + Cn3D is a helper application for your web browser that allows you to + view 3-dimensional structures from NCBI's Entrez retrieval service. + +Package: libvibrant6b +Architecture: any +Multi-Arch: same +Section: libs +Depends: libncbi6 (<< ${source:Upstream-Version}.1), + libncbi6 (>= ${source:Upstream-Version}), + ${misc:Depends}, + ${shlibs:Depends} +Pre-Depends: ${misc:Pre-Depends} +Recommends: sensible-utils, +Conflicts: libvibrant6, + libvibrant6a +Replaces: libvibrant6, + libvibrant6a +Description: NCBI libraries for graphic biology applications + This is the library for those who just want to run Vibrant applications. + It also includes a wrapper (vibrate) that allows many NCBI applications to + provide a GUI for selecting options. + +Package: libvibrant6-dev +Architecture: any +Multi-Arch: same +Depends: libglu1-mesa-dev | libglu-dev, + libmotif-dev, + libncbi6-dev (= ${binary:Version}), + libvibrant6b (= ${binary:Version}), + libxmu-dev, + ${misc:Depends} +Description: NCBI libraries for graphic biology applications (development files) + Vibrant allows you to develop portable (Motif, MS-Windows, Mac-OS) graphic + biological applications. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 00000000..4e3a3c8f --- /dev/null +++ b/debian/copyright @@ -0,0 +1,64 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Contact: toolbox@ncbi.nlm.nih.gov +Upstream-Name: ncbi +Source: http://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/ + +Files: * +Copyright: 1996-2017 NCBI +License: public_domain + +Files: debian/* +Copyright: 1998-1999 Stephane Bortzmeyer <bortzmeyer@pasteur.fr> + 2001 Dr. Guenter Bechly <gbechly@debian.org> + 2001-2018 Aaron M. Ucko <ucko@debian.org> +License: public_domain + +Files: debian/tests/test-data/* (except for trnascan-se_sample.output) +Copyright: 1996-2018 NCBI +License: public_domain +Comment: + nc0225.aso.gz and dsRNA_viruses.* can be dowloaded by running: + wget ftp://ftp.ncbi.nih.gov/ncbi-asn1/daily-nc/nc0225.aso.gz + wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ASN_BINARY/Viruses/dsRNA_viruses.ags.gz + wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Viruses/dsRNA_viruses.gene_info.gz + . + spidey_* can be downloaded using their accession numbers with help of idfetch, e.g.: + idfetch -dn -t 5 -c 1 -g 1327850419 -o spidey_mRNA.fasta + idfetch -dn -t 5 -c 1 -g 568802167 -o spidey_genome.fasta + . + Based on the example provided in /usr/share/doc/ncbi-tools-bin/tbl2asn.txt.gz, + Sc_16.sbt was generated using NCBI Submission Portal: + https://submit.ncbi.nlm.nih.gov/genbank/template/submission/ + . + The examples for Sc_16.fsa and Sc_16.tbl were taken from here: + https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/ + +Files: debian/tests/test-data/trnascan-se_sample.output +Copyright: 2018 Liubov Chuprikova <chuprikovalv@gmail.com> +License: public_domain +Comment: + The file was generated by tRNAscan-SE 2.0: + tRNAscan-SE -d -y -o trnascan-se_sample.output /usr/share/doc/trnascan-se/examples/Example1.fa + +License: public_domain + The NCBI toolkit has been put into the public domain, completely unfettered: + . + PUBLIC DOMAIN NOTICE + National Center for Biotechnology Information + . + This software/database is a "United States Government Work" under the + terms of the United States Copyright Act. It was written as part of + the author's official duties as a United States Government employee and + thus cannot be copyrighted. This software/database is freely available + to the public for use. The National Library of Medicine and the U.S. + Government have not placed any restriction on its use or reproduction. + . + Although all reasonable efforts have been taken to ensure the accuracy + and reliability of the software and data, the NLM and the U.S. + Government do not and cannot warrant the performance or results that + may be obtained by using this software or data. The NLM and the U.S. + Government disclaim all warranties, express or implied, including + warranties of performance, merchantability or fitness for any particular + purpose. + . + Please cite the author in any work or product based on this material. diff --git a/debian/ddv.desktop.in b/debian/ddv.desktop.in new file mode 100644 index 00000000..dd991172 --- /dev/null +++ b/debian/ddv.desktop.in @@ -0,0 +1,3 @@ +Name=DDV Sequence Alignment Viewer +GenericName=Sequence Alignment Viewer +Comment=View multiple sequence alignment for GenBank diff --git a/debian/entrez2.desktop.in b/debian/entrez2.desktop.in new file mode 100644 index 00000000..dee021ce --- /dev/null +++ b/debian/entrez2.desktop.in @@ -0,0 +1,3 @@ +Name=Entrez NCBI Database Querying Tool +GenericName=Database Querying Tool +Comment=Query NCBI databases and retrieve documents diff --git a/debian/header-deps b/debian/header-deps new file mode 100644 index 00000000..7c082c51 --- /dev/null +++ b/debian/header-deps @@ -0,0 +1,5 @@ +#!/bin/sh +for f in include/*; do + cpp -H -Iinclude -DWIN_MOTIF "$f" 2>&1 >/dev/null \ + | sed -e "/usr/d; s@^ *@$f: @" | sort -u +done diff --git a/debian/help2man b/debian/help2man new file mode 100644 index 00000000..0c9c7e9d --- /dev/null +++ b/debian/help2man @@ -0,0 +1,127 @@ +#!/usr/bin/perl -w +use strict; + +use POSIX qw(strftime); + +my $AUTHOR = 'Aaron M. Ucko <ucko@debian.org>'; + +# Generates initial Debian manpages based on help output ("-" flag). +# bod's help2man won't work here, since it assumes GNU conventions. + +# Sigh...vibrant and non-vibrant versions only agree on T/F, Integer, +# and String. +my %type_map = ( 'Data In' => 'filename', + 'Data Out' => 'filename', + 'File In' => 'filename', + 'File Out' => 'filename', + 'Float' => 'X', + 'Input-Data' => 'filename', + 'Input-File' => 'filename', + 'Integer' => 'N', + 'Output-Data' => 'filename', + 'Output-File' => 'filename', + 'Real' => 'X', + 'String' => 'str', + 'T/F' => undef ); + +foreach my $prog (@ARGV) { + my $base = $prog; + $base =~ s@.*/@@; + open(MAN, ">doc/man/$base.1") or die; + print MAN '.TH ', uc($base), ' 1 ', strftime('%Y-%m-%d', localtime), + " NCBI \"NCBI Tools User's Manual\"\n"; + print MAN ".SH NAME\n$base \\- ...\n"; + + my %options = parse_options($prog); + my $key; + + print MAN ".SH SYNOPSIS\n.B $base\n", synopsis(\%options); + print MAN <<EOF; +.SH DESCRIPTION +\\fB$base\\fP is ... +.SH OPTIONS +EOF + if (keys %options) { + print MAN "A summary of options is included below.\n"; + foreach my $key (sort keys %options) { + my $desc = $options{$key}; + $desc =~ s/\s+\[T\/F\]//; + $desc =~ s/\s+Optional//; + $desc =~ s/\n(.)/\n.br\n$1/g; + print MAN ".TP\n", format_arg($key, $desc), "\n", $desc; + } + } else { + print MAN "None.\n"; + } + print MAN <<EOF; +.SH AUTHOR +The National Center for Biotechnology Information. +EOF +} + +sub parse_options +{ + my $prog = $_[0]; + my %options; + my $last_option; + my $last_description; + + open(HELP, "$prog - </dev/null |") or die; + + while (<HELP>) { + if (/^ (-\S+)\s*(.*)/) { + $options{$last_option} = $last_description if defined $last_option; + $last_option = $1; + $last_description = "$2\n"; + } elsif (defined $last_option) { + $last_description .= $_; + } + } + + if (defined $last_option) { + $options{$last_option} = $last_description; + $options{'-'} = "Print usage message\n"; + } + + close(HELP); + + foreach my $key (keys %options) { + if ($options{$key} =~ s@(\[T/F\](\s+Optional)?)\s+default = T@$1@) { + $options{"$key\\ F"} = "NOT $options{$key}"; + delete $options{$key}; + } else { + $options{$key} =~ s@(\[T/F\](\s+Optional)?)(\s+default = F)?@$1@; + } + } + + return %options; +} + +sub synopsis +{ + my %options = %{$_[0]}; + my $result = ''; + + foreach my $key (sort keys %options) { + my $desc = $options{$key}; + my $optional = ($desc =~ /Optional/ || $desc =~ /default = / + || $key eq '-' || $desc =~ /\[T\/F\]/); + $result .= '[\|' if $optional; + $result .= format_arg($key, $desc); + $result .= '\|]' if $optional; + $result .= "\n"; + } + + return $result; +} + +sub format_arg +{ + my ($arg, $desc) = @_; + my $result = "\\fB\\$arg\\fP"; + if ($desc =~ /\[(.*?)\]/) { + my $contents = $type_map{$1}; + $result .= '\ \fI' . $contents . '\fP' if defined $contents; + } + return $result; +} diff --git a/debian/installman b/debian/installman new file mode 100644 index 00000000..9384e4fb --- /dev/null +++ b/debian/installman @@ -0,0 +1,56 @@ +#!/usr/bin/perl -w +use strict; +use IO::File; + +my $pkg = shift; +my $outdir = "debian/$pkg/usr/share/man/man1"; +my $USD = "/usr/share/doc"; +system("mkdir", "-p", $outdir) && die "Couldn't create $outdir"; + +foreach my $x (@ARGV ? @ARGV : <debian/$pkg/usr/bin/*>) { + my $full_x = $x; + $x =~ s:.*/::; + my $xin = $x; +# gone as of 6.1.20040616 +# if ($x eq 'fastamerge') { +# $xin = 'fmerge'; # renamed in Debian per #155791 +# } + if (-l $full_x) { + symlink readlink($full_x) . ".1", "$outdir/$x.1"; + next; + } + foreach my $dir ('doc/man', 'debian/man') { + if (-f "$dir/$xin.1") { + my $in = new IO::File("<$dir/$xin.1") + or die "Couldn't open $dir/$xin.1: $!"; + my $out = new IO::File(">$outdir/$x.1") + or die "Couldn't open $outdir/$x.1: $!"; + while (<$in>) { + # s/fmerge/fastamerge/g; + # s/FMERGE/FASTAMERGE/g; + s:(\w+)/README:README.$1:g; + while (/^(.*)(?<!\S)(README\.\w+|\w+\.txt|\w+\.html?)(.*)$/) { + my ($pre, $main, $post) = ($1, $2, $3); + my @matches = <debian/*$USD/*/$main>; + if (!@matches) { + warn "[$x] $USD/*/$main not found in any package"; + } elsif (@matches > 1) { + warn "[$x] $USD/*/$main found in multiple packages"; + } else { + my $m = $matches[0]; + $m .= '.gz' if ((-s $m) > 4096 && $m !~ /\.html?$/); + $m =~ s:^debian/[^/]*::; + print $out $pre . $m; + } + # Consider just the remaining text next time, + # and make sure it ends with exactly one newline. + chomp $post; + $_ = "$post\n"; + } + print $out $_; + } + last; + } + } + -f "$outdir/$x.1" || warn "Unable to find a man page for $x"; +} diff --git a/debian/left.gif b/debian/left.gif Binary files differnew file mode 100644 index 00000000..59620f51 --- /dev/null +++ b/debian/left.gif diff --git a/debian/libncbi6-dev.NEWS.debian b/debian/libncbi6-dev.NEWS.debian new file mode 100644 index 00000000..d0736223 --- /dev/null +++ b/debian/libncbi6-dev.NEWS.debian @@ -0,0 +1,7 @@ +ncbi-tools6 (6.1.20110713-3) unstable; urgency=low + + * The asntool and errhdr executables have moved to ncbi-tools-bin to + allow side-by-side installations of builds of libncbi6-dev (which + historically shipped them) for different architectures. + + -- Aaron M. Ucko <ucko@debian.org> Sat, 29 Oct 2011 22:21:10 -0400 diff --git a/debian/libncbi6-dev.README.debian b/debian/libncbi6-dev.README.debian new file mode 100644 index 00000000..59e2d566 --- /dev/null +++ b/debian/libncbi6-dev.README.debian @@ -0,0 +1,5 @@ +The (outdated) SDK manual also exists in HTML form at +ftp://ncbi.nlm.nih.gov/toolbox/ncbi_tools/sdkdoc/index.html + +Aaron M. Ucko <ucko@debian.org>, Mon Sep 10 10:40:35 EDT 2001 + diff --git a/debian/libncbi6-dev.docs b/debian/libncbi6-dev.docs new file mode 100644 index 00000000..dfc39a8b --- /dev/null +++ b/debian/libncbi6-dev.docs @@ -0,0 +1,4 @@ +doc/README.sdk +doc/access.txt +doc/asn2*.txt +doc/sdk.doc diff --git a/debian/libncbi6-dev.install b/debian/libncbi6-dev.install new file mode 100644 index 00000000..c9532b3e --- /dev/null +++ b/debian/libncbi6-dev.install @@ -0,0 +1,203 @@ +usr/include/ncbi/PubStructAsn.h +usr/include/ncbi/a2f*.h +usr/include/ncbi/acc*.h +usr/include/ncbi/acer*.h +usr/include/ncbi/actutils.h +usr/include/ncbi/algo +usr/include/ncbi/ali*.h +usr/include/ncbi/all.h +usr/include/ncbi/allpub.h +usr/include/ncbi/asn*.h +usr/include/ncbi/bandalgn.h +usr/include/ncbi/binary.h +usr/include/ncbi/bl*.h +usr/include/ncbi/bxmlobj.h +usr/include/ncbi/casn.h +usr/include/ncbi/cdconfig.h +usr/include/ncbi/cdd*.h +usr/include/ncbi/cdentrez.h +usr/include/ncbi/cdnewlib.h +usr/include/ncbi/cdrom*.h +usr/include/ncbi/codon.h +usr/include/ncbi/connect +usr/include/ncbi/corematx.h +usr/include/ncbi/ctools +usr/include/ncbi/db_list.h +usr/include/ncbi/ddvcolor.h +usr/include/ncbi/dotseq.h +usr/include/ncbi/dust.h +usr/include/ncbi/dvncode.h +usr/include/ncbi/edutil.h +usr/include/ncbi/egkludge.h +usr/include/ncbi/ent2api.h +usr/include/ncbi/errdefn.h +usr/include/ncbi/explore.h +usr/include/ncbi/fastadl.h +usr/include/ncbi/fdl*.h +usr/include/ncbi/ffprint.h +usr/include/ncbi/findrepl.h +usr/include/ncbi/ftusrstr.h +usr/include/ncbi/gapxdrop.h +usr/include/ncbi/gather.h +usr/include/ncbi/gb*.h +usr/include/ncbi/gifgen.h +usr/include/ncbi/id1*.h +usr/include/ncbi/id2*.h +usr/include/ncbi/jsavlt.h +usr/include/ncbi/jz*.h +usr/include/ncbi/list.h +usr/include/ncbi/lnfac.h +usr/include/ncbi/lookup.h +usr/include/ncbi/lsqfetch.h +usr/include/ncbi/macroapi.h +usr/include/ncbi/mapcn3d.h +usr/include/ncbi/mapmime.h +usr/include/ncbi/mapmla.h +usr/include/ncbi/mapproj.h +usr/include/ncbi/mappubme.h +usr/include/ncbi/maputil.h +usr/include/ncbi/matrix.h +usr/include/ncbi/mb*.h +usr/include/ncbi/mconsist.h +usr/include/ncbi/mdrcherr.h +usr/include/ncbi/medarch.h +usr/include/ncbi/medutil.h +usr/include/ncbi/mimapi.h +usr/include/ncbi/mkbioseq.h +usr/include/ncbi/mla2api.h +usr/include/ncbi/mlkludge.h +usr/include/ncbi/mmdb*.h +usr/include/ncbi/ncbi.h +usr/include/ncbi/ncbi_skew_guard.h +usr/include/ncbi/ncbibs.h +usr/include/ncbi/ncbienv.h +usr/include/ncbi/ncbierr.h +usr/include/ncbi/ncbifile.h +usr/include/ncbi/ncbilang.h +usr/include/ncbi/ncbilcl.h +usr/include/ncbi/ncbimain.h +usr/include/ncbi/ncbimath.h +usr/include/ncbi/ncbimem.h +usr/include/ncbi/ncbimisc.h +usr/include/ncbi/ncbimsg.h +usr/include/ncbi/ncbinet.h +usr/include/ncbi/ncbiopt.h +usr/include/ncbi/ncbiprop.h +usr/include/ncbi/ncbisam.h +usr/include/ncbi/ncbisami.h +usr/include/ncbi/ncbisgml.h +usr/include/ncbi/ncbisort.h +usr/include/ncbi/ncbisrti.h +usr/include/ncbi/ncbistd.h +usr/include/ncbi/ncbistr.h +usr/include/ncbi/ncbithr.h +usr/include/ncbi/ncbitime.h +usr/include/ncbi/ncbiwin.h +usr/include/ncbi/ncbiwww.h +usr/include/ncbi/needleman.h +usr/include/ncbi/netblap3.h +usr/include/ncbi/netcnfg.h +usr/include/ncbi/netentr.h +usr/include/ncbi/netlib.h +usr/include/ncbi/netpriv.h +usr/include/ncbi/ni_*.h +usr/include/ncbi/obj*.h +usr/include/ncbi/parsegb.h +usr/include/ncbi/pdiagnos.h +usr/include/ncbi/pgppop.h +usr/include/ncbi/pmfapi.h +usr/include/ncbi/pobutil.h +usr/include/ncbi/posit.h +usr/include/ncbi/profiles.h +usr/include/ncbi/prtutil.h +usr/include/ncbi/prunebsc.h +usr/include/ncbi/puberr.h +usr/include/ncbi/qblastapi.h +usr/include/ncbi/readdb.h +usr/include/ncbi/regex.h +usr/include/ncbi/rpsutil.h +usr/include/ncbi/salign.h +usr/include/ncbi/salmedia.h +usr/include/ncbi/salpacc.h +usr/include/ncbi/salpedit.h +usr/include/ncbi/salprop.h +usr/include/ncbi/salpstat.h +usr/include/ncbi/salptool.h +usr/include/ncbi/salsa.h +usr/include/ncbi/salsap.h +usr/include/ncbi/salstruc.h +usr/include/ncbi/salutil.h +usr/include/ncbi/samutil.h +usr/include/ncbi/satutil.h +usr/include/ncbi/scoremat.h +usr/include/ncbi/sec.h +usr/include/ncbi/seed.h +usr/include/ncbi/seg.h +usr/include/ncbi/seqmgr.h +usr/include/ncbi/seqport.h +usr/include/ncbi/seqsplit.h +usr/include/ncbi/sequtil.h +usr/include/ncbi/simple.h +usr/include/ncbi/simutil.h +usr/include/ncbi/spell*.h +usr/include/ncbi/spidey.h +usr/include/ncbi/splutil.h +usr/include/ncbi/sqnutils.h +usr/include/ncbi/strimprt.h +usr/include/ncbi/strucapi.h +usr/include/ncbi/stsutil.h +usr/include/ncbi/subutil.h +usr/include/ncbi/sug*.h +usr/include/ncbi/tax*.h +usr/include/ncbi/terr.h +usr/include/ncbi/tfuns.h +usr/include/ncbi/thrd*.h +usr/include/ncbi/to*.h +usr/include/ncbi/tree.h +usr/include/ncbi/treemgr.h +usr/include/ncbi/tsprintf.h +usr/include/ncbi/tx*.h +usr/include/ncbi/undefwin.h +usr/include/ncbi/urkbias.h +usr/include/ncbi/urkcnsrt.h +usr/include/ncbi/urkdust.h +usr/include/ncbi/urkepi.h +usr/include/ncbi/urkfltr.h +usr/include/ncbi/urkpcc.h +usr/include/ncbi/urkptpf.h +usr/include/ncbi/urksigu.h +usr/include/ncbi/urktree.h +usr/include/ncbi/urkutil.h +usr/include/ncbi/urlquery.h +usr/include/ncbi/util* +usr/include/ncbi/valapi.h +usr/include/ncbi/valid*.h +usr/include/ncbi/vast*.h +usr/include/ncbi/vecsc*.h +usr/include/ncbi/viewmgr.h +usr/include/ncbi/xmlblast.h +usr/lib/*/libblast*.a +usr/lib/*/libblast*.so +usr/lib/*/libconnssl.a +usr/lib/*/libconnssl.so +usr/lib/*/libncbi*acc.a +usr/lib/*/libncbi*acc.so +usr/lib/*/libncbi.a +usr/lib/*/libncbi.so +usr/lib/*/libncbicdr.a +usr/lib/*/libncbicdr.so +usr/lib/*/libncbiid1.a +usr/lib/*/libncbiid1.so +usr/lib/*/libncbimla.a +usr/lib/*/libncbimla.so +usr/lib/*/libncbimmdb.a +usr/lib/*/libncbimmdb.so +usr/lib/*/libncbiobj.a +usr/lib/*/libncbiobj.so +usr/lib/*/libncbitool.a +usr/lib/*/libncbitool.so +usr/lib/*/libncbitxc2.a +usr/lib/*/libncbitxc2.so +usr/lib/*/libnet*.a +usr/lib/*/libnet*.so +usr/lib/*/ncbithr.o diff --git a/debian/libncbi6.doc-base b/debian/libncbi6.doc-base new file mode 100644 index 00000000..7d97b6f3 --- /dev/null +++ b/debian/libncbi6.doc-base @@ -0,0 +1,13 @@ +Document: ncbi-tools-dispatcher +Title: NCBI Dispatcher Parameters +Author: The National Center for Biotechnology Information +Abstract: Problems connecting to NCBI databases may be due to the + presence of a firewall at your site, especially if you receive error + messages about the inability to connect to a dispatcher. This + document details how to configure clients to use firewalls, and how + to configure firewalls to let clients through. +Section: System/Administration + +Format: HTML +Index: /usr/share/doc/libncbi6/dispatcher.html +Files: /usr/share/doc/libncbi6/dispatcher.html diff --git a/debian/libncbi6.docs b/debian/libncbi6.docs new file mode 100644 index 00000000..e9013983 --- /dev/null +++ b/debian/libncbi6.docs @@ -0,0 +1,7 @@ +README +README.htm +debian/*.css +debian/*.gif +doc/FAQ.txt +doc/dispatcher.html +doc/ncbixml.txt diff --git a/debian/libncbi6.examples b/debian/libncbi6.examples new file mode 100644 index 00000000..cf954aff --- /dev/null +++ b/debian/libncbi6.examples @@ -0,0 +1 @@ +doc/fwd_check.sh diff --git a/debian/libncbi6.install b/debian/libncbi6.install new file mode 100644 index 00000000..f849f1f7 --- /dev/null +++ b/debian/libncbi6.install @@ -0,0 +1,13 @@ +usr/lib/*/libblast*.so.* +usr/lib/*/libconnssl.so.* +usr/lib/*/libncbi*acc.so.* +usr/lib/*/libncbi.so.* +usr/lib/*/libncbicdr.so.* +usr/lib/*/libncbiid1.so.* +usr/lib/*/libncbimla.so.* +usr/lib/*/libncbimmdb.so.* +usr/lib/*/libncbiobj.so.* +usr/lib/*/libncbitool.so.* +usr/lib/*/libncbitxc2.so.* +usr/lib/*/libnet*.so.* +usr/lib/*/libvibgif.so.* diff --git a/debian/libncbi6.symbols b/debian/libncbi6.symbols new file mode 100644 index 00000000..8faf3643 --- /dev/null +++ b/debian/libncbi6.symbols @@ -0,0 +1,11649 @@ +libblast.so.6 libncbi6 #MINVER# + ALIGN_EX@Base 6.1.20040616 + AMINOACID_TO_NCBISTDAA@Base 6.1.20040505 + AdjustSubjectRange@Base 6.1.20040505 + BLASTNA_TO_IUPACNA@Base 6.1.20080302 + BLASTNA_TO_NCBI4NA@Base 6.1.20040505 + BLAST_AffineGreedyAlign@Base 6.1.20040204 + BLAST_CalcEffLengths@Base 6.1.20040204 + BLAST_CheckRewardPenaltyScores@Base 6.1.20081116 + BLAST_ComplementMaskLocations@Base 6.1.20040204 + BLAST_ComputeLengthAdjustment@Base 6.1.20040505 + BLAST_ComputeTraceback@Base 6.1.20040204 + BLAST_ComputeTraceback_MT@Base 6.1.20160908 + BLAST_ContextToFrame@Base 6.1.20040204 + BLAST_CreateMixedFrameDNATranslation@Base 6.1.20060507 + BLAST_Cutoffs@Base 6.1.20040204 + BLAST_Erf@Base 6.1.20120620 + BLAST_ErfC@Base 6.1.20120620 + BLAST_Expm1@Base 6.1.20040204 + BLAST_Factorial@Base 6.1.20040204 + BLAST_FillEffectiveLengthsOptions@Base 6.1.20040204 + BLAST_FillExtensionOptions@Base 6.1.20040204 + BLAST_FillHitSavingOptions@Base 6.1.20040204 + BLAST_FillInitialWordOptions@Base 6.1.20040204 + BLAST_FillLookupTableOptions@Base 6.1.20040204 + BLAST_FillQuerySetUpOptions@Base 6.1.20040204 + BLAST_FillScoringOptions@Base 6.1.20040204 + BLAST_FindBestNucleotideWordSize@Base 6.1.20060507 + BLAST_FrameToContext@Base 6.1.20061015 + BLAST_GapAlignSetUp@Base 6.1.20040505 + BLAST_GapAlignStructFree@Base 6.1.20040204 + BLAST_GapAlignStructNew@Base 6.1.20040204 + BLAST_GapDecayDivisor@Base 6.1.20040505 + BLAST_GappedAlignmentWithTraceback@Base 6.1.20040204 + BLAST_Gcd@Base 6.1.20040204 + BLAST_Gdb3@Base 6.1.20050429 + BLAST_GetAllTranslations@Base 6.1.20040204 + BLAST_GetAlphaBeta@Base 6.1.20040204 + BLAST_GetGappedScore@Base 6.1.20040204 + BLAST_GetNucleotideGapExistenceExtendParams@Base 6.1.20051206 + BLAST_GetNumberOfContexts@Base 6.1.20051206 + BLAST_GetProteinGapExistenceExtendParams@Base 6.1.20051206 + BLAST_GetStandardAaProbabilities@Base 6.1.20050429 + BLAST_GetSubjectTotals@Base 6.1.20061015 + BLAST_GetSuggestedThreshold@Base 6.1.20051206 + BLAST_GetSuggestedWindowSize@Base 6.1.20051206 + BLAST_GetTranslatedProteinLength@Base 6.1.20061015 + BLAST_GetTranslation@Base 6.1.20040204 + BLAST_GetUngappedHSPList@Base 6.1.20040204 + BLAST_GreedyAlign@Base 6.1.20040204 + BLAST_GreedyGappedAlignment@Base 6.1.20040204 + BLAST_InitDefaultOptions@Base 6.1.20040204 + BLAST_InitHitListFree@Base 6.1.20040505 + BLAST_InitHitListNew@Base 6.1.20040204 + BLAST_KarlinEtoP@Base 6.1.20061015 + BLAST_KarlinPtoE@Base 6.1.20061015 + BLAST_KarlinStoE_simple@Base 6.1.20040204 + BLAST_LargeGapSumE@Base 6.1.20040204 + BLAST_LinkHsps@Base 6.1.20040204 + BLAST_LnFactorial@Base 6.1.20040204 + BLAST_LnGammaInt@Base 6.1.20040204 + BLAST_Log1p@Base 6.1.20040204 + BLAST_MainSetUp@Base 6.1.20040204 + BLAST_Nint@Base 6.1.20040204 + BLAST_OneSubjectUpdateParameters@Base 6.1.20040505 + BLAST_PackDNA@Base 6.1.20040204 + BLAST_Powi@Base 6.1.20040204 + BLAST_PreliminarySearchEngine@Base 6.1.20041020 + BLAST_PrintAllowedValues@Base 6.1.20040204 + BLAST_PrintMatrixMessage@Base 6.1.20040204 + BLAST_RombergIntegrate@Base 6.1.20040204 + BLAST_SaveInitialHit@Base 6.1.20040204 + BLAST_ScoreSetAmbigRes@Base 6.1.20040204 + BLAST_SetupPartialFetching@Base 6.1.20120620 + BLAST_SmallGapSumE@Base 6.1.20040204 + BLAST_SmithWatermanGetGappedScore@Base 6.1.20061015 + BLAST_SpougeEtoS@Base 6.1.20120620 + BLAST_SpougeStoE@Base 6.1.20110713 + BLAST_StrToUpper@Base 6.1.20050605 + BLAST_TranslateCompressedSequence@Base 6.1.20040204 + BLAST_UnevenGapSumE@Base 6.1.20040204 + BLAST_ValidateOptions@Base 6.1.20040505 + BSearchContextInfo@Base 6.1.20050429 + BSearchInt4@Base 6.1.20040204 + BackboneCellFree@Base 6.1.20160908 + BackboneCellInit@Base 6.1.20170106 + BackboneCellNew@Base 6.1.20160908 + BlastAaLookupFinalize@Base 6.1.20070822 + BlastAaLookupIndexQuery@Base 6.1.20041020 + BlastAaLookupTableDestruct@Base 6.1.20070822 + BlastAaLookupTableNew@Base 6.1.20070822 + BlastAaWordFinder@Base 6.1.20040204 + BlastChooseNaExtend@Base 6.1.20070822 + BlastChooseNaLookupTable@Base 6.1.20070822 + BlastChooseNucleotideScanSubject@Base 6.1.20070822 + BlastChooseNucleotideScanSubjectAny@Base 6.1.20090719 + BlastChooseProteinScanSubject@Base 6.1.20070822 + BlastCompressBlastnaSequence@Base 6.1.20070822 + BlastCompressedAaLookupTableDestruct@Base 6.1.20070822 + BlastCompressedAaLookupTableNew@Base 6.1.20070822 + BlastDatabaseOptionsFree@Base 6.1.20040204 + BlastDatabaseOptionsNew@Base 6.1.20040204 + BlastEffectiveLengthsOptionsFree@Base 6.1.20040204 + BlastEffectiveLengthsOptionsNew@Base 6.1.20040204 + BlastEffectiveLengthsOptions_IsSearchSpaceSet@Base 6.1.20061015 + BlastEffectiveLengthsParametersFree@Base 6.1.20040505 + BlastEffectiveLengthsParametersNew@Base 6.1.20040505 + BlastExtendWordFree@Base 6.1.20040204 + BlastExtendWordNew@Base 6.1.20040505 + BlastExtensionOptionsFree@Base 6.1.20040204 + BlastExtensionOptionsNew@Base 6.1.20040204 + BlastExtensionOptionsValidate@Base 6.1.20040204 + BlastExtensionParametersFree@Base 6.1.20040204 + BlastExtensionParametersNew@Base 6.1.20040204 + BlastFilteringOptionsFromString@Base 6.1.20050429 + BlastFilteringOptionsToString@Base 6.1.20081116 + BlastGetOffsetsForGappedAlignment@Base 6.1.20110713 + BlastGetStartForGappedAlignment@Base 6.1.20040505 + BlastGetStartForGappedAlignmentNucl@Base 6.1.20160908 + BlastHSPBestHitOptionsFree@Base 6.1.20090719 + BlastHSPBestHitOptionsNew@Base 6.1.20090719 + BlastHSPBestHitOptionsValidate@Base 6.1.20090719 + BlastHSPCollectorInfoNew@Base 6.1.20090719 + BlastHSPCollectorParamsFree@Base 6.1.20090719 + BlastHSPCollectorParamsNew@Base 6.1.20090719 + BlastHSPCullingOptionsFree@Base 6.1.20090719 + BlastHSPCullingOptionsNew@Base 6.1.20090719 + BlastHSPCullingOptionsValidate@Base 6.1.20090719 + BlastHSPFilteringOptionsFree@Base 6.1.20090719 + BlastHSPFilteringOptionsNew@Base 6.1.20090719 + BlastHSPFilteringOptionsValidate@Base 6.1.20090719 + BlastHSPFilteringOptions_AddBestHit@Base 6.1.20090719 + BlastHSPFilteringOptions_AddCulling@Base 6.1.20090719 + BlastHSPListDup@Base 6.1.20070822 + BlastHSPMappingInfoFree@Base 6.1.20160908 + BlastHSPMappingInfoNew@Base 6.1.20160908 + BlastHSPPipeInfo_Add@Base 6.1.20090719 + BlastHSPPipeNew@Base 6.1.20090719 + BlastHSPStreamBatchRead@Base 6.1.20070822 + BlastHSPStreamClose@Base 6.1.20040616 + BlastHSPStreamFree@Base 6.1.20040616 + BlastHSPStreamMappingClose@Base 6.1.20160908 + BlastHSPStreamMerge@Base 6.1.20070822 + BlastHSPStreamNew@Base 6.1.20040616 + BlastHSPStreamRead@Base 6.1.20040616 + BlastHSPStreamRegisterMTLock@Base 6.1.20090719 + BlastHSPStreamRegisterPipe@Base 6.1.20090719 + BlastHSPStreamResultsBatchArrayFree@Base 6.1.20160908 + BlastHSPStreamResultsBatchNew@Base 6.1.20160908 + BlastHSPStreamSimpleClose@Base 6.1.20160908 + BlastHSPStreamTBackClose@Base 6.1.20090719 + BlastHSPStreamToHSPStreamResultsBatch@Base 6.1.20160908 + BlastHSPStreamWrite@Base 6.1.20040616 + BlastHSPWriterNew@Base 6.1.20090719 + BlastHashLookupIndexQueryExactMatches@Base 6.1.20160908 + BlastHitSavingOptionsFree@Base 6.1.20040204 + BlastHitSavingOptionsNew@Base 6.1.20040204 + BlastHitSavingOptionsValidate@Base 6.1.20040204 + BlastHitSavingParametersFree@Base 6.1.20040204 + BlastHitSavingParametersNew@Base 6.1.20040204 + BlastHitSavingParametersUpdate@Base 6.1.20040505 + BlastHspNumMax@Base 6.1.20060507 + BlastInitHitListMove@Base 6.1.20061015 + BlastInitHitListReset@Base 6.1.20040505 + BlastInitialWordOptionsFree@Base 6.1.20040204 + BlastInitialWordOptionsNew@Base 6.1.20040204 + BlastInitialWordOptionsValidate@Base 6.1.20041020 + BlastInitialWordParametersFree@Base 6.1.20040204 + BlastInitialWordParametersNew@Base 6.1.20040204 + BlastInitialWordParametersUpdate@Base 6.1.20040505 + BlastIntervalTreeAddHSP@Base 6.1.20050429 + BlastIntervalTreeContainsHSP@Base 6.1.20050429 + BlastIntervalTreeMasksHSP@Base 6.1.20110713 + BlastIntervalTreeNumRedundant@Base 6.1.20050429 + BlastLinkHSPParametersFree@Base 6.1.20041020 + BlastLinkHSPParametersNew@Base 6.1.20041020 + BlastLinkHSPParametersUpdate@Base 6.1.20041020 + BlastLookupAddWordHit@Base 6.1.20070822 + BlastLookupIndexQueryExactMatches@Base 6.1.20070822 + BlastMBLookupTableDestruct@Base 6.1.20070822 + BlastMBLookupTableNew@Base 6.1.20070822 + BlastMaskLocDNAToProtein@Base 6.1.20050429 + BlastMaskLocDup@Base 6.1.20061015 + BlastMaskLocFree@Base 6.1.20040204 + BlastMaskLocNew@Base 6.1.20040505 + BlastMaskLocProteinToDNA@Base 6.1.20050429 + BlastMemDup@Base 6.1.20040204 + BlastNaExtendJumper@Base 6.1.20160908 + BlastNaHashLookupTableDestruct@Base 6.1.20160908 + BlastNaHashLookupTableNew@Base 6.1.20160908 + BlastNaLookupTableDestruct@Base 6.1.20070822 + BlastNaLookupTableNew@Base 6.1.20070822 + BlastNaWordFinder@Base 6.1.20040204 + BlastNumber2Program@Base 6.1.20040204 + BlastProgram2Number@Base 6.1.20040204 + BlastQueryInfoDup@Base 6.1.20040616 + BlastQueryInfoFree@Base 6.1.20040204 + BlastQueryInfoGetEffSearchSpace@Base 6.1.20060507 + BlastQueryInfoGetQueryLength@Base 6.1.20051206 + BlastQueryInfoNew@Base 6.1.20060301 + BlastQueryInfoSetEffSearchSpace@Base 6.1.20060507 + BlastQuerySetUpOptionsFree@Base 6.1.20040204 + BlastQuerySetUpOptionsNew@Base 6.1.20040204 + BlastRPSScanSubject@Base 6.1.20040505 + BlastRPSWordFinder@Base 6.1.20070822 + BlastSaveInitHsp@Base 6.1.20040204 + BlastScoreBlkCheck@Base 6.1.20100808 + BlastScoreBlkFree@Base 6.1.20040204 + BlastScoreBlkNew@Base 6.1.20040204 + BlastScoreBlkNuclMatrixCreate@Base 6.1.20041020 + BlastScoringOptionsDup@Base 6.1.20040505 + BlastScoringOptionsFree@Base 6.1.20040204 + BlastScoringOptionsNew@Base 6.1.20040204 + BlastScoringOptionsSetMatrix@Base 6.1.20050429 + BlastScoringOptionsValidate@Base 6.1.20040204 + BlastScoringParametersFree@Base 6.1.20040616 + BlastScoringParametersNew@Base 6.1.20040616 + BlastSeqBlkNew@Base 6.1.20040204 + BlastSeqBlkSetCompressedSequence@Base 6.1.20040204 + BlastSeqBlkSetSeqRanges@Base 6.1.20081116 + BlastSeqBlkSetSequence@Base 6.1.20040204 + BlastSeqLocAppend@Base 6.1.20051206 + BlastSeqLocCombine@Base 6.1.20051206 + BlastSeqLocFree@Base 6.1.20040204 + BlastSeqLocListDup@Base 6.1.20051206 + BlastSeqLocListReverse@Base 6.1.20080302 + BlastSeqLocNew@Base 6.1.20040204 + BlastSeqLocNodeFree@Base 6.1.20051206 + BlastSeqLocReverse@Base 6.1.20050828 + BlastSeqLoc_RestrictToInterval@Base 6.1.20050429 + BlastSeqSrcCopy@Base 6.1.20040616 + BlastSeqSrcFree@Base 6.1.20040204 + BlastSeqSrcGetAvgSeqLen@Base 6.1.20050429 + BlastSeqSrcGetInitError@Base 6.1.20050429 + BlastSeqSrcGetIsProt@Base 6.1.20050429 + BlastSeqSrcGetMaxSeqLen@Base 6.1.20050429 + BlastSeqSrcGetMinSeqLen@Base 6.1.20120620 + BlastSeqSrcGetName@Base 6.1.20050429 + BlastSeqSrcGetNumSeqs@Base 6.1.20050429 + BlastSeqSrcGetNumSeqsStats@Base 6.1.20070822 + BlastSeqSrcGetSeqLen@Base 6.1.20050429 + BlastSeqSrcGetSequence@Base 6.1.20050429 + BlastSeqSrcGetSupportsPartialFetching@Base 6.1.20110713 + BlastSeqSrcGetTotLen@Base 6.1.20050429 + BlastSeqSrcGetTotLenStats@Base 6.1.20070822 + BlastSeqSrcIteratorFree@Base 6.1.20040204 + BlastSeqSrcIteratorNew@Base 6.1.20040204 + BlastSeqSrcIteratorNewEx@Base 6.1.20050429 + BlastSeqSrcIteratorNext@Base 6.1.20040204 + BlastSeqSrcNew@Base 6.1.20040204 + BlastSeqSrcReleaseSequence@Base 6.1.20050429 + BlastSeqSrcResetChunkIterator@Base 6.1.20070822 + BlastSeqSrcSetNumberOfThreads@Base 6.1.20090719 + BlastSeqSrcSetRangesArgAddRange@Base 6.1.20120620 + BlastSeqSrcSetRangesArgBuild@Base 6.1.20120620 + BlastSeqSrcSetRangesArgFree@Base 6.1.20110713 + BlastSeqSrcSetRangesArgNew@Base 6.1.20110713 + BlastSeqSrcSetSeqRanges@Base 6.1.20110713 + BlastSequenceBlkClean@Base 6.1.20040204 + BlastSequenceBlkCopy@Base 6.1.20040505 + BlastSequenceBlkFree@Base 6.1.20040204 + BlastSetUp_Filter@Base 6.1.20040204 + BlastSetUp_GetFilteringLocations@Base 6.1.20040505 + BlastSetUp_MaskQuery@Base 6.1.20040505 + BlastSetUp_SeqBlkNew@Base 6.1.20040204 + BlastSetup_ScoreBlkInit@Base 6.1.20050429 + BlastSetup_Validate@Base 6.1.20070822 + BlastSmallNaLookupTableDestruct@Base 6.1.20070822 + BlastSmallNaLookupTableNew@Base 6.1.20070822 + BlastTargetTranslationFree@Base 6.1.20090301 + BlastTargetTranslationNew@Base 6.1.20090301 + Blast_DiagnosticsCopy@Base 6.1.20110713 + Blast_DiagnosticsFree@Base 6.1.20040616 + Blast_DiagnosticsInit@Base 6.1.20040616 + Blast_DiagnosticsInitMT@Base 6.1.20041020 + Blast_DiagnosticsUpdate@Base 6.1.20041020 + Blast_ExtendWordExit@Base 6.1.20061015 + Blast_FillResidueProbability@Base 6.1.20040616 + Blast_GetNuclAlphaBeta@Base 6.1.20050828 + Blast_GetOneQueryStructs@Base 6.1.20050429 + Blast_GetPartialTranslation@Base 6.1.20050429 + Blast_GetQueryIndexFromContext@Base 6.1.20040616 + Blast_GetQueryIndexFromQueryOffset@Base 6.1.20120620 + Blast_GetStdAlphabet@Base 6.1.20040616 + Blast_GumbelBlkCalc@Base 6.1.20110713 + Blast_GumbelBlkLoadFromTables@Base 6.1.20110713 + Blast_HSPAdjustSubjectOffset@Base 6.1.20050429 + Blast_HSPCalcLengthAndGaps@Base 6.1.20040616 + Blast_HSPChainFree@Base 6.1.20160908 + Blast_HSPChainNew@Base 6.1.20160908 + Blast_HSPClone@Base 6.1.20160908 + Blast_HSPFree@Base 6.1.20040505 + Blast_HSPGetAdjustedOffsets@Base 6.1.20040616 + Blast_HSPGetNumIdentities@Base 6.1.20040505 + Blast_HSPGetNumIdentitiesAndPositives@Base 6.1.20120620 + Blast_HSPGetPartialSubjectTranslation@Base 6.1.20050429 + Blast_HSPGetQueryCoverage@Base 6.1.20160908 + Blast_HSPGetTargetTranslation@Base 6.1.20090301 + Blast_HSPInit@Base 6.1.20040505 + Blast_HSPListAdjustOddBlastnScores@Base 6.1.20050828 + Blast_HSPListAdjustOffsets@Base 6.1.20040505 + Blast_HSPListAppend@Base 6.1.20040505 + Blast_HSPListFree@Base 6.1.20040505 + Blast_HSPListGetBitScores@Base 6.1.20040616 + Blast_HSPListGetEvalues@Base 6.1.20040505 + Blast_HSPListIsSortedByScore@Base 6.1.20050429 + Blast_HSPListNew@Base 6.1.20040505 + Blast_HSPListPHIGetBitScores@Base 6.1.20050429 + Blast_HSPListPHIGetEvalues@Base 6.1.20040505 + Blast_HSPListPurgeHSPsWithCommonEndpoints@Base 6.1.20050605 + Blast_HSPListPurgeNullHSPs@Base 6.1.20040505 + Blast_HSPListReapByEvalue@Base 6.1.20040505 + Blast_HSPListReapByQueryCoverage@Base 6.1.20160908 + Blast_HSPListReapByRawScore@Base 6.1.20110713 + Blast_HSPListReevaluateUngapped@Base 6.1.20100808 + Blast_HSPListSaveHSP@Base 6.1.20040505 + Blast_HSPListSortByEvalue@Base 6.1.20041020 + Blast_HSPListSortByScore@Base 6.1.20041020 + Blast_HSPListSwap@Base 6.1.20070822 + Blast_HSPList_IsEmpty@Base 6.1.20061015 + Blast_HSPListsMerge@Base 6.1.20040505 + Blast_HSPNew@Base 6.1.20040505 + Blast_HSPQueryCoverageTest@Base 6.1.20160908 + Blast_HSPReevaluateWithAmbiguitiesGapped@Base 6.1.20050429 + Blast_HSPReevaluateWithAmbiguitiesUngapped@Base 6.1.20050429 + Blast_HSPResultsApplyMasklevel@Base 6.1.20110713 + Blast_HSPResultsFree@Base 6.1.20040505 + Blast_HSPResultsFromHSPStream@Base 6.1.20060301 + Blast_HSPResultsFromHSPStreamWithLimit@Base 6.1.20060301 + Blast_HSPResultsFromHSPStreamWithLimitEx@Base 6.1.20120620 + Blast_HSPResultsInsertHSPList@Base 6.1.20040616 + Blast_HSPResultsNew@Base 6.1.20050429 + Blast_HSPResultsReverseOrder@Base 6.1.20041020 + Blast_HSPResultsReverseSort@Base 6.1.20080302 + Blast_HSPResultsSortByEvalue@Base 6.1.20040505 + Blast_HSPStreamResultBatchFree@Base 6.1.20070822 + Blast_HSPStreamResultBatchInit@Base 6.1.20070822 + Blast_HSPStreamResultBatchReset@Base 6.1.20070822 + Blast_HSPTest@Base 6.1.20120620 + Blast_HSPTestIdentityAndLength@Base 6.1.20050429 + Blast_HSPUpdateWithTraceback@Base 6.1.20050429 + Blast_HitListFree@Base 6.1.20040505 + Blast_HitListHSPListsFree@Base 6.1.20040505 + Blast_HitListMerge@Base 6.1.20070822 + Blast_HitListNew@Base 6.1.20040505 + Blast_HitListPurgeNullHSPLists@Base 6.1.20061015 + Blast_HitListSortByEvalue@Base 6.1.20160908 + Blast_HitListUpdate@Base 6.1.20040505 + Blast_InitHitListIsSortedByScore@Base 6.1.20050429 + Blast_InitHitListSortByScore@Base 6.1.20050429 + Blast_IntervalTreeFree@Base 6.1.20050429 + Blast_IntervalTreeInit@Base 6.1.20050429 + Blast_IntervalTreeReset@Base 6.1.20050429 + Blast_KarlinBlkCopy@Base 6.1.20050429 + Blast_KarlinBlkFree@Base 6.1.20050429 + Blast_KarlinBlkGappedCalc@Base 6.1.20040505 + Blast_KarlinBlkGappedLoadFromTables@Base 6.1.20050429 + Blast_KarlinBlkNew@Base 6.1.20050429 + Blast_KarlinBlkNuclGappedCalc@Base 6.1.20050828 + Blast_KarlinBlkUngappedCalc@Base 6.1.20050429 + Blast_KarlinLambdaNR@Base 6.1.20040505 + Blast_MappingResultsFree@Base 6.1.20160908 + Blast_MappingResultsNew@Base 6.1.20160908 + Blast_MaskTheResidues@Base 6.1.20040505 + Blast_MaskUnsupportedAA@Base 6.1.20061015 + Blast_MessageFree@Base 6.1.20040204 + Blast_MessagePost@Base 6.1.20040204 + Blast_MessageWrite@Base 6.1.20040204 + Blast_Perror@Base 6.1.20050429 + Blast_PerrorEx@Base 6.1.20060301 + Blast_PrelimEditBlockToGapEditScript@Base 6.1.20050429 + Blast_ProgramIsMapping@Base 6.1.20160908 + Blast_ProgramIsNucleotide@Base 6.1.20160908 + Blast_ProgramIsPhiBlast@Base 6.1.20050828 + Blast_ProgramIsPsiBlast@Base 6.1.20050828 + Blast_ProgramIsRpsBlast@Base 6.1.20050828 + Blast_ProgramIsValid@Base 6.1.20070822 + Blast_QueryIsNucleotide@Base 6.1.20050828 + Blast_QueryIsPattern@Base 6.1.20160908 + Blast_QueryIsProtein@Base 6.1.20050828 + Blast_QueryIsPssm@Base 6.1.20050828 + Blast_QueryIsTranslated@Base 6.1.20050828 + Blast_RedoAlignmentCore@Base 6.1.20051206 + Blast_RedoAlignmentCore_MT@Base 6.1.20160908 + Blast_ResFreqFree@Base 6.1.20050429 + Blast_ResFreqNew@Base 6.1.20040505 + Blast_ResFreqStdComp@Base 6.1.20040505 + Blast_RunFullSearch@Base 6.1.20050429 + Blast_RunPreliminarySearch@Base 6.1.20050429 + Blast_RunPreliminarySearchWithInterrupt@Base 6.1.20110713 + Blast_RunTracebackSearch@Base 6.1.20050429 + Blast_RunTracebackSearchWithInterrupt@Base 6.1.20110713 + Blast_ScoreBlkKbpGappedCalc@Base 6.1.20050429 + Blast_ScoreBlkKbpIdealCalc@Base 6.1.20050429 + Blast_ScoreBlkKbpUngappedCalc@Base 6.1.20050429 + Blast_ScoreBlkMatrixFill@Base 6.1.20050429 + Blast_ScoreBlkMatrixInit@Base 6.1.20050429 + Blast_ScoreFreqFree@Base 6.1.20050429 + Blast_ScoreFreqNew@Base 6.1.20040616 + Blast_SemiGappedAlign@Base 6.1.20050429 + Blast_SetPHIPatternInfo@Base 6.1.20050429 + Blast_SubjectIsNucleotide@Base 6.1.20050828 + Blast_SubjectIsProtein@Base 6.1.20050828 + Blast_SubjectIsPssm@Base 6.1.20050828 + Blast_SubjectIsTranslated@Base 6.1.20050828 + Blast_TracebackFromHSPList@Base 6.1.20040505 + Blast_TracebackGetEncoding@Base 6.1.20040616 + Blast_TrimHSPListByMaxHsps@Base 6.1.20160908 + Blast_UngappedStatsUpdate@Base 6.1.20040616 + CalculateLinkHSPCutoffs@Base 6.1.20040505 + ContextOffsetsToOffsetArray@Base 6.1.20050429 + DynamicInt4ArrayFree@Base 6.1.20070822 + DynamicInt4ArrayNew@Base 6.1.20070822 + DynamicInt4Array_Append@Base 6.1.20070822 + DynamicSGenCodeNodeArrayFree@Base 6.1.20070822 + DynamicSGenCodeNodeArrayNew@Base 6.1.20070822 + DynamicSGenCodeNodeArray_Append@Base 6.1.20070822 + DynamicSGenCodeNodeArray_Find@Base 6.1.20070822 + DynamicUint4ArrayFree@Base 6.1.20070822 + DynamicUint4ArrayNew@Base 6.1.20070822 + DynamicUint4ArrayNewEx@Base 6.1.20070822 + DynamicUint4Array_Append@Base 6.1.20070822 + DynamicUint4Array_AreEqual@Base 6.1.20070822 + DynamicUint4Array_Copy@Base 6.1.20070822 + DynamicUint4Array_Dup@Base 6.1.20070822 + Erf@Base 6.1.20160908 + ErfC@Base 6.1.20160908 + EstimateNumTableEntries@Base 6.1.20060301 + FindPatternHits@Base 6.1.20040204 + GapEditScriptCombine@Base 6.1.20160908 + GapEditScriptDelete@Base 6.1.20040204 + GapEditScriptDup@Base 6.1.20060301 + GapEditScriptNew@Base 6.1.20040204 + GapEditScriptPartialCopy@Base 6.1.20060301 + GapPrelimEditBlockAdd@Base 6.1.20050429 + GapPrelimEditBlockAppend@Base 6.1.20050429 + GapPrelimEditBlockFree@Base 6.1.20050429 + GapPrelimEditBlockNew@Base 6.1.20050429 + GapPrelimEditBlockReset@Base 6.1.20050429 + GapStateFree@Base 6.1.20040204 + GenCodeSingletonAdd@Base 6.1.20070822 + GenCodeSingletonFind@Base 6.1.20070822 + GenCodeSingletonFini@Base 6.1.20070822 + GenCodeSingletonInit@Base 6.1.20070822 + GetOffsetArraySize@Base 6.1.20040204 + GetReverseNuclSequence@Base 6.1.20040204 + IUPACNA_TO_BLASTNA@Base 6.1.20040505 + IUPACNA_TO_NCBI4NA@Base 6.1.20040505 + JumperEditsBlockCombine@Base 6.1.20160908 + JumperEditsBlockDup@Base 6.1.20160908 + JumperEditsBlockFree@Base 6.1.20160908 + JumperEditsBlockNew@Base 6.1.20160908 + JumperExtendLeft@Base 6.1.20160908 + JumperExtendLeftCompressed@Base 6.1.20160908 + JumperExtendLeftCompressedWithTraceback@Base 6.1.20160908 + JumperExtendLeftCompressedWithTracebackOptimal@Base 6.1.20160908 + JumperExtendRight@Base 6.1.20160908 + JumperExtendRightCompressed@Base 6.1.20160908 + JumperExtendRightCompressedWithTraceback@Base 6.1.20160908 + JumperExtendRightCompressedWithTracebackOptimal@Base 6.1.20160908 + JumperExtendRightWithTraceback@Base 6.1.20160908 + JumperFindEdits@Base 6.1.20160908 + JumperFindSpliceSignals@Base 6.1.20160908 + JumperGapAlignFree@Base 6.1.20160908 + JumperGapAlignNew@Base 6.1.20160908 + JumperGappedAlignmentCompressedWithTraceback@Base 6.1.20160908 + JumperGoodAlign@Base 6.1.20160908 + JumperNaWordFinder@Base 6.1.20160908 + JumperPrelimEditBlockAdd@Base 6.1.20160908 + JumperPrelimEditBlockToGapEditScript@Base 6.1.20160908 + Kappa_compactSearchItemsFree@Base 6.1.20050429 + Kappa_compactSearchItemsNew@Base 6.1.20050429 + Kappa_impalaScaling@Base 6.1.20050429 + Kappa_posSearchItemsFree@Base 6.1.20050429 + Kappa_posSearchItemsNew@Base 6.1.20050429 + ListNodeAdd@Base 6.1.20040204 + ListNodeAddPointer@Base 6.1.20040204 + ListNodeCopyStr@Base 6.1.20040204 + ListNodeFree@Base 6.1.20040204 + ListNodeFreeData@Base 6.1.20040204 + ListNodeNew@Base 6.1.20040204 + LookupTableOptionsFree@Base 6.1.20040204 + LookupTableOptionsNew@Base 6.1.20040204 + LookupTableOptionsValidate@Base 6.1.20040204 + LookupTableWrapFree@Base 6.1.20040204 + LookupTableWrapInit@Base 6.1.20040204 + LookupTableWrapInit_MT@Base 6.1.20170106 + MBSpaceFree@Base 6.1.20040204 + MBSpaceNew@Base 6.1.20040204 + MB_IndexedWordFinder@Base 6.1.20061015 + MapperWordHitsFree@Base 6.1.20160908 + MapperWordHitsNew@Base 6.1.20160908 + NCBI4NA_TO_BLASTNA@Base 6.1.20040204 + NCBI4NA_TO_IUPACNA@Base 6.1.20080302 + NCBISTDAA_TO_AMINOACID@Base 6.1.20061015 + OffsetArrayToContextOffsets@Base 6.1.20050429 + PHIBlastScanSubject@Base 6.1.20040204 + PHIBlastWordFinder@Base 6.1.20040204 + PHIBlast_HSPResultsSplit@Base 6.1.20050605 + PHIGappedAlignmentWithTraceback@Base 6.1.20040204 + PHIGetGappedScore@Base 6.1.20040204 + PHIGetPatternOccurrences@Base 6.1.20050429 + PSIBlastOptionsFree@Base 6.1.20040204 + PSIBlastOptionsNew@Base 6.1.20040204 + PSIBlastOptionsValidate@Base 6.1.20050429 + PSICreatePssm@Base 6.1.20041020 + PSICreatePssmFromCDD@Base 6.1.20120620 + PSICreatePssmFromFrequencyRatios@Base 6.1.20050605 + PSICreatePssmWithDiagnostics@Base 6.1.20041020 + PSIDiagnosticsRequestFree@Base 6.1.20050429 + PSIDiagnosticsRequestNew@Base 6.1.20050429 + PSIDiagnosticsRequestNewEx@Base 6.1.20090719 + PSIDiagnosticsResponseFree@Base 6.1.20041020 + PSIDiagnosticsResponseNew@Base 6.1.20041020 + PSIMatrixFree@Base 6.1.20040616 + PSIMatrixNew@Base 6.1.20040616 + PSIMsaFree@Base 6.1.20041020 + PSIMsaNew@Base 6.1.20041020 + PhiBlastGetEffectiveNumberOfPatterns@Base 6.1.20061015 + QueryInfo_GetSeqBufLen@Base 6.1.20050429 + RPSLookupTableDestruct@Base 6.1.20040505 + RPSLookupTableNew@Base 6.1.20040505 + RPSPsiMatrixAttach@Base 6.1.20050429 + RPSPsiMatrixDetach@Base 6.1.20050429 + RPSRescalePssm@Base 6.1.20050429 + SBlastFilterOptionsFree@Base 6.1.20050429 + SBlastFilterOptionsMaskAtHash@Base 6.1.20050429 + SBlastFilterOptionsMerge@Base 6.1.20070822 + SBlastFilterOptionsNew@Base 6.1.20050429 + SBlastFilterOptionsNoFiltering@Base 6.1.20081116 + SBlastFilterOptionsValidate@Base 6.1.20050429 + SBlastHitsParametersDup@Base 6.1.20061015 + SBlastHitsParametersFree@Base 6.1.20050605 + SBlastHitsParametersNew@Base 6.1.20050605 + SBlastProgressFree@Base 6.1.20060507 + SBlastProgressNew@Base 6.1.20060507 + SBlastProgressReset@Base 6.1.20060507 + SBlastScoreMatrixFree@Base 6.1.20160908 + SBlastScoreMatrixNew@Base 6.1.20160908 + SCompressedAlphabetFree@Base 6.1.20070822 + SCompressedAlphabetNew@Base 6.1.20070822 + SDustOptionsFree@Base 6.1.20050429 + SDustOptionsNew@Base 6.1.20050429 + SMessageOriginFree@Base 6.1.20060301 + SMessageOriginNew@Base 6.1.20060301 + SPHIPatternSearchBlkFree@Base 6.1.20050429 + SPHIPatternSearchBlkNew@Base 6.1.20050429 + SPHIQueryInfoCopy@Base 6.1.20050429 + SPHIQueryInfoFree@Base 6.1.20050429 + SPHIQueryInfoNew@Base 6.1.20050429 + SPsiBlastScoreMatrixFree@Base 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AsnDeBinReadNull@Base 6.1.20030421 + AsnDeBinReadOctets@Base 6.1.20030421 + AsnDeBinReadReal@Base 6.1.20030421 + AsnDeBinReadString@Base 6.1.20030421 + AsnDeBinScanTag@Base 6.1.20030421 + AsnDeBinSkipOctets@Base 6.1.20030421 + AsnDeBinSkipString@Base 6.1.20030421 + AsnDeBinSkipStruct@Base 6.1.20030421 + AsnElementTypeNew@Base 6.1.20030421 + AsnEnBinBigInt@Base 6.1.20030421 + AsnEnBinBoolean@Base 6.1.20030421 + AsnEnBinCloseStruct@Base 6.1.20030421 + AsnEnBinEndIndef@Base 6.1.20030421 + AsnEnBinInteger@Base 6.1.20030421 + AsnEnBinLen@Base 6.1.20030421 + AsnEnBinNull@Base 6.1.20030421 + AsnEnBinOctets@Base 6.1.20030421 + AsnEnBinOpenStruct@Base 6.1.20030421 + AsnEnBinReal@Base 6.1.20030421 + AsnEnBinStartIndef@Base 6.1.20030421 + AsnEnBinString@Base 6.1.20030421 + AsnEnBinTags@Base 6.1.20030421 + AsnEnBinTheBytes@Base 6.1.20030421 + AsnEnumStr@Base 6.1.20030421 + AsnEnumTypeStr@Base 6.1.20030421 + AsnErrGetTypeName@Base 6.1.20030421 + AsnExpOptFree@Base 6.1.20030421 + AsnExpOptNew@Base 6.1.20030421 + AsnFindBaseIsa@Base 6.1.20030421 + AsnFindBaseName@Base 6.1.20030421 + AsnFindBaseType@Base 6.1.20030421 + AsnFindBaseTypeDTD@Base 6.1.20040204 + AsnFindNthPieceOfObject@Base 6.1.20030421 + AsnFindPrimName@Base 6.1.20030421 + AsnGenericBaseSeqOfAsnRead@Base 6.1.20030421 + AsnGenericBaseSeqOfAsnWrite@Base 6.1.20030421 + AsnGenericBaseSeqOfFree@Base 6.1.20030421 + AsnGenericChoiceSeqOfAsnRead@Base 6.1.20030421 + AsnGenericChoiceSeqOfAsnWrite@Base 6.1.20030421 + AsnGenericChoiceSeqOfFree@Base 6.1.20030421 + AsnGenericUserSeqOfAsnRead@Base 6.1.20030421 + AsnGenericUserSeqOfAsnWrite@Base 6.1.20030421 + AsnGenericUserSeqOfFree@Base 6.1.20030421 + AsnGenericValNodeSetAsnRead@Base 6.1.20100808 + AsnGenericValNodeSetAsnWrite@Base 6.1.20100808 + AsnGenericValNodeSetFree@Base 6.1.20100808 + AsnGetLevel@Base 6.1.20030421 + AsnGetType@Base 6.1.20030421 + AsnGetXMLmodulePrefix@Base 6.1.20030421 + AsnIoBSClose@Base 6.1.20030421 + AsnIoBSOpen@Base 6.1.20030421 + AsnIoBSRead@Base 6.1.20030421 + AsnIoBSWrite@Base 6.1.20030421 + AsnIoClose@Base 6.1.20030421 + AsnIoCopy@Base 6.1.20030421 + AsnIoErrorMsg@Base 6.1.20030421 + AsnIoFlush@Base 6.1.20030421 + AsnIoFree@Base 6.1.20030421 + AsnIoGets@Base 6.1.20030421 + AsnIoHash@Base 6.1.20030421 + AsnIoMemClose@Base 6.1.20030421 + AsnIoMemComp@Base 6.1.20030421 + AsnIoMemCopy@Base 6.1.20030421 + AsnIoMemOpen@Base 6.1.20030421 + AsnIoMemRead@Base 6.1.20030421 + AsnIoMemReset@Base 6.1.20030421 + AsnIoMemWrite@Base 6.1.20030421 + AsnIoNew@Base 6.1.20030421 + AsnIoOpen@Base 6.1.20030421 + AsnIoOptionFree@Base 6.1.20030421 + AsnIoOptionGet@Base 6.1.20030421 + AsnIoOptionNew@Base 6.1.20030421 + AsnIoPuts@Base 6.1.20030421 + AsnIoReadBlock@Base 6.1.20030421 + AsnIoReset@Base 6.1.20030421 + AsnIoSeek@Base 6.1.20030421 + AsnIoSetBufsize@Base 6.1.20030421 + AsnIoSetErrorMsg@Base 6.1.20030421 + AsnIoTell@Base 6.1.20030421 + AsnIoWriteBlock@Base 6.1.20030421 + AsnKillValue@Base 6.1.20030421 + AsnLexBigInt@Base 6.1.20030421 + AsnLexFindElement@Base 6.1.20030421 + AsnLexFindType@Base 6.1.20030421 + AsnLexInteger@Base 6.1.20030421 + AsnLexReadBigInt@Base 6.1.20030421 + AsnLexReadBoolean@Base 6.1.20030421 + AsnLexReadInteger@Base 6.1.20030421 + AsnLexReadNull@Base 6.1.20030421 + AsnLexReadOctets@Base 6.1.20030421 + AsnLexReadReal@Base 6.1.20030421 + AsnLexReadString@Base 6.1.20030421 + AsnLexSaveWord@Base 6.1.20030421 + AsnLexSkipOctets@Base 6.1.20030421 + AsnLexSkipString@Base 6.1.20030421 + AsnLexSkipStruct@Base 6.1.20030421 + AsnLexTMatchToken@Base 6.1.20030421 + AsnLexTReadAlternativeTypeList@Base 6.1.20030421 + AsnLexTReadElementTypeList@Base 6.1.20030421 + AsnLexTReadModule@Base 6.1.20030421 + AsnLexTReadType@Base 6.1.20030421 + AsnLexTReadTypeAssign@Base 6.1.20030421 + AsnLexTStartModule@Base 6.1.20030421 + AsnLexTWord@Base 6.1.20030421 + AsnLexWord@Base 6.1.20030421 + AsnLinkType@Base 6.1.20030421 + AsnLoadModules@Base 6.1.20030421 + AsnModuleLink@Base 6.1.20030421 + AsnNullValueMsg@Base 6.1.20030421 + AsnOpenStruct@Base 6.1.20030421 + AsnOptionFree@Base 6.1.20030421 + AsnOptionGet@Base 6.1.20030421 + AsnOptionNew@Base 6.1.20030421 + AsnOutAddType@Base 6.1.20030421 + AsnOutDefineElement@Base 6.1.20030421 + AsnOutDefineType@Base 6.1.20030421 + AsnOutFindType@Base 6.1.20030421 + AsnOutFindValue@Base 6.1.20030421 + AsnOutNewType@Base 6.1.20030421 + AsnOutNewValueChain@Base 6.1.20030421 + AsnOutput@Base 6.1.20030421 + AsnPrintBigInt@Base 6.1.20030421 + AsnPrintBoolean@Base 6.1.20030421 + AsnPrintChar@Base 6.1.20030421 + AsnPrintCharBlock@Base 6.1.20030421 + AsnPrintCloseStruct@Base 6.1.20030421 + AsnPrintGetWordBreak@Base 6.1.20030421 + AsnPrintIndent@Base 6.1.20030421 + AsnPrintInteger@Base 6.1.20030421 + AsnPrintModule@Base 6.1.20030421 + AsnPrintModuleXML@Base 6.1.20030421 + AsnPrintModuleXMLInc@Base 6.1.20030421 + AsnPrintNewLine@Base 6.1.20030421 + AsnPrintOctets@Base 6.1.20030421 + AsnPrintOpenStruct@Base 6.1.20030421 + AsnPrintReal@Base 6.1.20030421 + AsnPrintStrStore@Base 6.1.20030421 + AsnPrintStream@Base 6.1.20031028 + AsnPrintString@Base 6.1.20030421 + AsnPrintTreeModule@Base 6.1.20030421 + AsnPrintType@Base 6.1.20030421 + AsnReadId@Base 6.1.20030421 + AsnReadVal@Base 6.1.20030421 + AsnSetTags@Base 6.1.20030421 + AsnSetXMLmodulePrefix@Base 6.1.20030421 + AsnSetXMLmodulePrefixToDefault@Base 6.1.20030421 + AsnSkipValue@Base 6.1.20030421 + AsnStoreTree@Base 6.1.20030421 + AsnTreeLoad@Base 6.1.20030421 + AsnTxtBufWrite@Base 6.1.20030421 + AsnTxtReadId@Base 6.1.20030421 + AsnTxtReadVal@Base 6.1.20030421 + AsnTxtWrite@Base 6.1.20030421 + AsnTxtWriteEx@Base 6.1.20031028 + AsnTypeDumpStack@Base 6.1.20030421 + AsnTypeFind@Base 6.1.20030421 + AsnTypeFindType@Base 6.1.20030421 + AsnTypeNew@Base 6.1.20030421 + AsnTypePathFind@Base 6.1.20030421 + AsnTypeSetIndent@Base 6.1.20030421 + AsnTypeStringToHex@Base 6.1.20030421 + AsnTypeValidateOut@Base 6.1.20030421 + AsnUnlinkType@Base 6.1.20030421 + AsnValxNodeNew@Base 6.1.20030421 + AsnWrite@Base 6.1.20030421 + AsnWriteChoice@Base 6.1.20030421 + AsnWriteEx@Base 6.1.20031028 + BUF_Append@Base 6.1.20050429 + BUF_AppendEx@Base 6.1.20100808 + BUF_Destroy@Base 6.1.20030421 + BUF_Erase@Base 6.1.20050429 + BUF_Peek@Base 6.1.20030421 + BUF_PeekAt@Base 6.1.20030421 + BUF_PeekAtCB@Base 6.1.20070822 + BUF_Prepend@Base 6.1.20050429 + BUF_PrependEx@Base 6.1.20100808 + BUF_Pushback@Base 6.1.20160908 + BUF_Read@Base 6.1.20030421 + BUF_SetChunkSize@Base 6.1.20030421 + BUF_Size@Base 6.1.20030421 + BUF_Splice@Base 6.1.20160908 + BUF_StripToPattern@Base 6.1.20030421 + BUF_Write@Base 6.1.20030421 + B_DeleteGlobal@Base 6.1.20030421 + B_Get@Base 6.1.20030421 + B_GetBag@Base 6.1.20030421 + B_GetFirst@Base 6.1.20030421 + B_Insert@Base 6.1.20030421 + B_NewGlobal@Base 6.1.20030421 + BreakString@Base 6.1.20030421 + BytesToUint8@Base 6.1.20030421 + CONNECT_BASE64_Decode@Base 6.1.20100808 + CONNECT_BASE64_Encode@Base 6.1.20100808 + CONNECT_Init@Base 6.1.20030421 + CONN_Close@Base 6.1.20030421 + CONN_Create@Base 6.1.20030421 + CONN_CreateEx@Base 6.1.20110713 + CONN_Description@Base 6.1.20031028 + CONN_Flush@Base 6.1.20030421 + CONN_GetFlags@Base 6.1.20120620 + CONN_GetPosition@Base 6.1.20110713 + CONN_GetSOCK@Base 6.1.20120620 + CONN_GetTimeout@Base 6.1.20030421 + CONN_GetType@Base 6.1.20030421 + CONN_GetUserData@Base 6.1.20160908 + CONN_Pushback@Base 6.1.20160908 + CONN_ReInit@Base 6.1.20030421 + CONN_Read@Base 6.1.20030421 + CONN_ReadLine@Base 6.1.20040616 + CONN_SetCallback@Base 6.1.20030421 + CONN_SetFlags@Base 6.1.20120620 + CONN_SetTimeout@Base 6.1.20030421 + CONN_SetUserData@Base 6.1.20160908 + CONN_Status@Base 6.1.20030421 + CONN_StripToPattern@Base 6.1.20030421 + CONN_Wait@Base 6.1.20030421 + CONN_Write@Base 6.1.20030421 + CORE_GetAppName@Base 6.1.20110713 + CORE_GetLOCK@Base 6.1.20030421 + CORE_GetLOG@Base 6.1.20030421 + CORE_GetNcbiRequestID@Base 6.1.20160908 + CORE_GetPlatform@Base 6.1.20030421 + CORE_GetREG@Base 6.1.20030421 + CORE_GetUsername@Base 6.1.20061015 + CORE_GetUsernameEx@Base 6.1.20160908 + CORE_GetVMPageSize@Base 6.1.20061015 + CORE_SendMail@Base 6.1.20030421 + CORE_SendMailEx@Base 6.1.20030421 + CORE_SetLOCK@Base 6.1.20030421 + CORE_SetLOG@Base 6.1.20030421 + CORE_SetLOGFILE@Base 6.1.20030421 + CORE_SetLOGFILE_Ex@Base 6.1.20070822 + CORE_SetLOGFILE_NAME@Base 6.1.20030421 + CORE_SetLOGFILE_NAME_Ex@Base 6.1.20070822 + CORE_SetLOGFormatFlags@Base 6.1.20030421 + CORE_SetREG@Base 6.1.20030421 + CleanSpaces@Base 6.1.20030421 + ConnNetInfo_AppendArg@Base 6.1.20030421 + ConnNetInfo_AppendUserHeader@Base 6.1.20030421 + ConnNetInfo_Boolean@Base 6.1.20100808 + ConnNetInfo_Clone@Base 6.1.20030421 + ConnNetInfo_Create@Base 6.1.20030421 + ConnNetInfo_DeleteAllArgs@Base 6.1.20060301 + ConnNetInfo_DeleteArg@Base 6.1.20030421 + ConnNetInfo_DeleteUserHeader@Base 6.1.20030421 + ConnNetInfo_Destroy@Base 6.1.20030421 + ConnNetInfo_ExtendUserHeader@Base 6.1.20030421 + ConnNetInfo_GetValue@Base 6.1.20060507 + ConnNetInfo_Log@Base 6.1.20160908 + ConnNetInfo_OverrideUserHeader@Base 6.1.20030421 + ConnNetInfo_ParseURL@Base 6.1.20030421 + ConnNetInfo_PostOverrideArg@Base 6.1.20030421 + ConnNetInfo_PreOverrideArg@Base 6.1.20030421 + ConnNetInfo_PrependArg@Base 6.1.20030421 + ConnNetInfo_SetTimeout@Base 6.1.20110713 + ConnNetInfo_SetUserHeader@Base 6.1.20030421 + ConnNetInfo_SetupStandardArgs@Base 6.1.20060301 + ConnNetInfo_URL@Base 6.1.20100808 + CountChar@Base 6.1.20030421 + CountSet@Base 6.1.20030421 + CountStrings@Base 6.1.20030421 + CreateAsnConn@Base 6.1.20030421 + CreateAsnConn_Service@Base 6.1.20030421 + CreateAsnConn_ServiceEx@Base 6.1.20030421 + DSOCK_Bind@Base 6.1.20031028 + DSOCK_Connect@Base 6.1.20031028 + DSOCK_Create@Base 6.1.20030421 + DSOCK_CreateEx@Base 6.1.20030421 + DSOCK_GetMessageCount@Base 6.1.20110713 + DSOCK_RecvMsg@Base 6.1.20030421 + DSOCK_SendMsg@Base 6.1.20030421 + DSOCK_SetBroadcast@Base 6.1.20030421 + DSOCK_WaitMsg@Base 6.1.20030421 + DSOCK_WipeMsg@Base 6.1.20030421 + DecodeXml@Base 6.1.20120620 + DeleteChar@Base 6.1.20030421 + EncodeXml@Base 6.1.20120620 + EncodeXmlEx@Base 6.1.20160908 + ErrClearOptFlags@Base 6.1.20030421 + ErrGetExplanation@Base 6.1.20030421 + ErrGetFatalLevel@Base 6.1.20030421 + ErrGetLogLevel@Base 6.1.20030421 + ErrGetMessageLevel@Base 6.1.20030421 + ErrGetMsgRoot@Base 6.1.20030421 + ErrRestoreOptions@Base 6.1.20030421 + ErrSaveOptions@Base 6.1.20030421 + ErrSetFatalLevel@Base 6.1.20030421 + ErrSetLogLevel@Base 6.1.20030421 + ErrSetMessageLevel@Base 6.1.20030421 + ErrSetOptFlags@Base 6.1.20030421 + ErrTestOptFlags@Base 6.1.20030421 + FILE_CreateConnector@Base 6.1.20030421 + FILE_CreateConnectorEx@Base 6.1.20030421 + FTP_CreateConnector@Base 6.1.20100808 + FTP_CreateConnectorSimple@Base 6.1.20110713 + FreeXmlObject@Base 6.1.20110713 + GetAppParamBoolean@Base 6.1.20030421 + GetAppParamLong@Base 6.1.20030421 + HEAP_AddRef@Base 6.1.20060507 + HEAP_Alloc@Base 6.1.20030421 + HEAP_Attach@Base 6.1.20030421 + HEAP_AttachFast@Base 6.1.20070822 + HEAP_Base@Base 6.1.20030421 + HEAP_Copy@Base 6.1.20060507 + HEAP_Create@Base 6.1.20030421 + HEAP_Destroy@Base 6.1.20030421 + HEAP_Detach@Base 6.1.20030421 + HEAP_Free@Base 6.1.20030421 + HEAP_FreeFast@Base 6.1.20070822 + HEAP_Next@Base 6.1.20160908 + HEAP_Options@Base 6.1.20070822 + HEAP_Serial@Base 6.1.20030421 + HEAP_Size@Base 6.1.20030421 + HEAP_Trim@Base 6.1.20031028 + HEAP_Walk@Base 6.1.20030421 + HINFO_AffinityArgument@Base 6.1.20060507 + HINFO_AffinityArgvalue@Base 6.1.20060507 + HINFO_CpuClock@Base 6.1.20081116 + HINFO_CpuCount@Base 6.1.20030421 + HINFO_CpuUnits@Base 6.1.20081116 + HINFO_Create@Base 6.1.20030421 + HINFO_Environment@Base 6.1.20030421 + HINFO_HostAddr@Base 6.1.20081116 + HINFO_LoadAverage@Base 6.1.20030421 + HINFO_MachineParams@Base 6.1.20090301 + HINFO_Memusage@Base 6.1.20081116 + HINFO_Status@Base 6.1.20030421 + HINFO_TaskCount@Base 6.1.20030421 + HTTP_CreateConnector@Base 6.1.20030421 + HTTP_CreateConnectorEx@Base 6.1.20030421 + HTTP_CreateTunnel@Base 6.1.20110713 + HTTP_CreateTunnelEx@Base 6.1.20110713 + HTTP_SetNcbiMessageHook@Base 6.1.20060301 + IO_StatusStr@Base 6.1.20030421 + LBOS_Announce@Base 6.1.20160908 + LBOS_AnnounceFromRegistry@Base 6.1.20160908 + LBOS_Deannounce@Base 6.1.20160908 + LBOS_DeannounceAll@Base 6.1.20160908 + LBOS_ServiceVersionDelete@Base 6.1.20160908 + LBOS_ServiceVersionGet@Base 6.1.20160908 + LBOS_ServiceVersionSet@Base 6.1.20160908 + LBSMD_FastHeapAccess@Base 6.1.20070822 + LBSMD_GetConfig@Base 6.1.20050605 + LBSMD_GetHeapCopy@Base 6.1.20060507 + LBSMD_GetHostParameter@Base 6.1.20090301 + LBSMD_GetLocalHostAddress@Base 6.1.20160908 + LBSM_HINFO_CpuClock@Base 6.1.20081116 + LBSM_HINFO_CpuCount@Base 6.1.20030421 + LBSM_HINFO_CpuUnits@Base 6.1.20081116 + LBSM_HINFO_LoadAverage@Base 6.1.20030421 + LBSM_HINFO_MachineParams@Base 6.1.20090301 + LBSM_HINFO_Memusage@Base 6.1.20081116 + LBSM_HINFO_Status@Base 6.1.20030421 + LBSM_HINFO_TaskCount@Base 6.1.20030421 + LB_Select@Base 6.1.20060301 + LOG_AddRef@Base 6.1.20030421 + LOG_ComposeMessage@Base 6.1.20030421 + LOG_Create@Base 6.1.20030421 + LOG_Delete@Base 6.1.20030421 + LOG_LevelStr@Base 6.1.20030421 + LOG_Reset@Base 6.1.20030421 + LOG_ToFILE@Base 6.1.20030421 + LOG_ToFILE_Ex@Base 6.1.20070822 + LOG_Write@Base 6.1.20090301 + LOG_WriteInternal@Base 6.1.20030421 + LOG_c2c@Base 6.1.20030421 + LSOCK_Accept@Base 6.1.20030421 + LSOCK_AcceptEx@Base 6.1.20081116 + LSOCK_Close@Base 6.1.20030421 + LSOCK_Create@Base 6.1.20030421 + LSOCK_CreateEx@Base 6.1.20030421 + LSOCK_CreateUNIX@Base 6.1.20050429 + LSOCK_GetOSHandle@Base 6.1.20030421 + LSOCK_GetOSHandleEx@Base 6.1.20120620 + LSOCK_GetPort@Base 6.1.20110713 + ListBreakRing@Base 6.1.20030421 + ListConnectRing@Base 6.1.20030421 + ListDelete@Base 6.1.20030421 + ListGetNext@Base 6.1.20030421 + ListInsert@Base 6.1.20030421 + ListInsertPrev@Base 6.1.20030421 + ListSort@Base 6.1.20030421 + ListStrCopy@Base 6.1.20030421 + ListStrDel@Base 6.1.20030421 + ListSwapAdj@Base 6.1.20030421 + MEMORY_CreateConnector@Base 6.1.20030421 + MEMORY_CreateConnectorEx@Base 6.1.20050429 + METACONN_Insert@Base 6.1.20170106 + METACONN_Remove@Base 6.1.20030421 + MIME_ComposeContentTypeEx@Base 6.1.20030421 + MIME_ParseContentTypeEx@Base 6.1.20030421 + MT_LOCK_AddRef@Base 6.1.20030421 + MT_LOCK_Create@Base 6.1.20030421 + MT_LOCK_Delete@Base 6.1.20030421 + MT_LOCK_DoInternal@Base 6.1.20030421 + MT_LOCK_c2c@Base 6.1.20030421 + MergeStringArray@Base 6.1.20120620 + NCBISM_Blosum45@Base 6.1.20031028 + NCBISM_Blosum50@Base 6.1.20061015 + NCBISM_Blosum62@Base 6.1.20031028 + NCBISM_Blosum80@Base 6.1.20031028 + NCBISM_Blosum90@Base 6.1.20061015 + NCBISM_GetIndex@Base 6.1.20031028 + NCBISM_GetScore@Base 6.1.20031028 + NCBISM_GetStandardMatrix@Base 6.1.20081116 + NCBISM_Identity@Base 6.1.20160908 + NCBISM_Pam250@Base 6.1.20040204 + NCBISM_Pam30@Base 6.1.20031028 + NCBISM_Pam70@Base 6.1.20031028 + NCBISM_Unpack@Base 6.1.20031028 + NCBI_memcchr@Base 6.1.20170106 + NCBI_simple_atof@Base 6.1.20160908 + NCBI_simple_ftoa@Base 6.1.20160908 + NCBI_strlwr@Base 6.1.20030421 + NCBI_strupr@Base 6.1.20030421 + NcbiAddrToDNS@Base 6.1.20170106 + NcbiAddrToString@Base 6.1.20170106 + NcbiIPToAddr@Base 6.1.20170106 + NcbiIPv4ToIPv6@Base 6.1.20170106 + NcbiIPv4ToString@Base 6.1.20170106 + NcbiIPv6ToIPv4@Base 6.1.20170106 + NcbiIPv6ToString@Base 6.1.20170106 + NcbiIsEmptyIPv6@Base 6.1.20170106 + NcbiIsIPv4@Base 6.1.20170106 + NcbiIsInIPv6Network@Base 6.1.20170106 + NcbiMessagePlusError@Base 6.1.20081116 + NcbiMsToTimeout@Base 6.1.20070822 + NcbiStringToAddr@Base 6.1.20170106 + NcbiStringToIPv4@Base 6.1.20170106 + NcbiStringToIPv6@Base 6.1.20170106 + NcbiTimeoutToMs@Base 6.1.20070822 + NlmCPUNumber@Base 6.1.20030421 + NlmMutexDestroy@Base 6.1.20030421 + NlmMutexInit@Base 6.1.20030421 + NlmMutexLock@Base 6.1.20030421 + NlmMutexLockEx@Base 6.1.20030421 + NlmMutexTryLock@Base 6.1.20030421 + NlmMutexTryLockEx@Base 6.1.20030421 + NlmMutexUnlock@Base 6.1.20030421 + NlmRWdestroy@Base 6.1.20030421 + NlmRWinit@Base 6.1.20030421 + NlmRWprintout@Base 6.1.20030421 + NlmRWrdlockEx@Base 6.1.20030421 + NlmRWtryrdlockEx@Base 6.1.20030421 + NlmRWtrywrlockEx@Base 6.1.20030421 + NlmRWunlockEx@Base 6.1.20030421 + NlmRWwrlockEx@Base 6.1.20030421 + NlmSemaDestroy@Base 6.1.20030421 + NlmSemaInit@Base 6.1.20030421 + NlmSemaPost@Base 6.1.20030421 + NlmSemaTryWait@Base 6.1.20030421 + NlmSemaWait@Base 6.1.20030421 + NlmThreadAddOnExit@Base 6.1.20030421 + NlmThreadCompare@Base 6.1.20030421 + NlmThreadCreate@Base 6.1.20030421 + NlmThreadCreateEx@Base 6.1.20030421 + NlmThreadDestroyAll@Base 6.1.20030421 + NlmThreadExit@Base 6.1.20030421 + NlmThreadJoin@Base 6.1.20030421 + NlmThreadJoinAll@Base 6.1.20030421 + NlmThreadMemFree@Base 6.1.20030421 + NlmThreadRemoveOnExit@Base 6.1.20030421 + NlmThreadSelf@Base 6.1.20030421 + NlmThreadsAvailable@Base 6.1.20030421 + NlmTlsGetValue@Base 6.1.20030421 + NlmTlsSetValue@Base 6.1.20030421 + Nlm_AbnormalExit@Base 6.1.20030421 + Nlm_AbnormalExitPure@Base 6.1.20030421 + Nlm_AssertionFailed@Base 6.1.20030421 + Nlm_BSAdd@Base 6.1.20030421 + Nlm_BSDelete@Base 6.1.20030421 + Nlm_BSDup@Base 6.1.20030421 + Nlm_BSDupAndSwapUint4@Base 6.1.20030421 + Nlm_BSEqual@Base 6.1.20090301 + Nlm_BSFree@Base 6.1.20030421 + Nlm_BSGetByte@Base 6.1.20030421 + Nlm_BSGetUint2@Base 6.1.20030421 + Nlm_BSGetUint4@Base 6.1.20030421 + Nlm_BSInsert@Base 6.1.20030421 + Nlm_BSInsertFromBS@Base 6.1.20030421 + Nlm_BSLen@Base 6.1.20030421 + Nlm_BSMerge@Base 6.1.20030421 + Nlm_BSNew@Base 6.1.20030421 + Nlm_BSPutByte@Base 6.1.20030421 + Nlm_BSPutUint2@Base 6.1.20030421 + Nlm_BSPutUint4@Base 6.1.20030421 + Nlm_BSRead@Base 6.1.20030421 + Nlm_BSSeek@Base 6.1.20030421 + Nlm_BSTell@Base 6.1.20030421 + Nlm_BSUint2Read@Base 6.1.20030421 + Nlm_BSUint2Write@Base 6.1.20030421 + Nlm_BSUint4Read@Base 6.1.20030421 + Nlm_BSUint4Write@Base 6.1.20030421 + Nlm_BSWrite@Base 6.1.20030421 + Nlm_Beep@Base 6.1.20030421 + Nlm_CPUTimeFree@Base 6.1.20030421 + Nlm_CPUTimeGetSys@Base 6.1.20030421 + Nlm_CPUTimeGetUser@Base 6.1.20030421 + Nlm_CPUTimeMeasure@Base 6.1.20030421 + Nlm_CacheAppParam@Base 6.1.20030421 + Nlm_CallErrHandlerOnly@Base 6.1.20030421 + Nlm_CallocViaMalloc@Base 6.1.20030421 + Nlm_CompressSpaces@Base 6.1.20110713 + Nlm_CreateDir@Base 6.1.20030421 + Nlm_DayTimeStr@Base 6.1.20030421 + Nlm_DiGamma@Base 6.1.20030421 + Nlm_DirCatalog@Base 6.1.20030421 + Nlm_DirExplore@Base 6.1.20070822 + Nlm_EnumAppProperties@Base 6.1.20030421 + Nlm_ErrClear@Base 6.1.20030421 + Nlm_ErrCopy@Base 6.1.20030421 + Nlm_ErrFetch@Base 6.1.20030421 + Nlm_ErrGetLogfile@Base 6.1.20030421 + Nlm_ErrGetOpts@Base 6.1.20030421 + Nlm_ErrGetUserStrings@Base 6.1.20030421 + Nlm_ErrLogPrintStr@Base 6.1.20030421 + Nlm_ErrLogPrintf@Base 6.1.20030421 + Nlm_ErrPathReset@Base 6.1.20030421 + Nlm_ErrPost@Base 6.1.20030421 + Nlm_ErrPostEx@Base 6.1.20030421 + Nlm_ErrPostStr@Base 6.1.20030421 + Nlm_ErrSetContext@Base 6.1.20030421 + Nlm_ErrSetHandler@Base 6.1.20030421 + Nlm_ErrSetLogfile@Base 6.1.20030421 + Nlm_ErrSetOpts@Base 6.1.20030421 + Nlm_ErrShow@Base 6.1.20030421 + Nlm_ErrUserClear@Base 6.1.20030421 + Nlm_ErrUserDelete@Base 6.1.20030421 + Nlm_ErrUserInstall@Base 6.1.20030421 + Nlm_Expm1@Base 6.1.20030421 + Nlm_Factorial@Base 6.1.20030421 + Nlm_FileBuildPath@Base 6.1.20030421 + Nlm_FileCacheFree@Base 6.1.20040616 + Nlm_FileCacheGetString@Base 6.1.20040616 + Nlm_FileCacheReadLine@Base 6.1.20040616 + Nlm_FileCacheSeek@Base 6.1.20040616 + Nlm_FileCacheSetup@Base 6.1.20040616 + Nlm_FileCacheTell@Base 6.1.20040616 + Nlm_FileClose@Base 6.1.20030421 + Nlm_FileCreate@Base 6.1.20030421 + Nlm_FileGets@Base 6.1.20030421 + Nlm_FileLength@Base 6.1.20030421 + Nlm_FileLengthEx@Base 6.1.20030421 + Nlm_FileNameFind@Base 6.1.20030421 + Nlm_FileOpen@Base 6.1.20030421 + Nlm_FilePathFind@Base 6.1.20030421 + Nlm_FilePuts@Base 6.1.20030421 + Nlm_FileRead@Base 6.1.20030421 + Nlm_FileRemove@Base 6.1.20030421 + Nlm_FileRename@Base 6.1.20030421 + Nlm_FileWrite@Base 6.1.20030421 + Nlm_FindPath@Base 6.1.20030421 + Nlm_FlushAppParam@Base 6.1.20030421 + Nlm_FreeArgs@Base 6.1.20030421 + Nlm_FreeCmdLineArguments@Base 6.1.20030421 + Nlm_FreeConfigStruct@Base 6.1.20030421 + Nlm_Gamma@Base 6.1.20030421 + Nlm_GammaCoeffSet@Base 6.1.20030421 + Nlm_Gcd@Base 6.1.20030421 + Nlm_GetAppParam@Base 6.1.20030421 + Nlm_GetAppProcessID@Base 6.1.20030421 + Nlm_GetAppProperty@Base 6.1.20030421 + Nlm_GetArgc@Base 6.1.20030421 + Nlm_GetArgs@Base 6.1.20030421 + Nlm_GetArgsSilent@Base 6.1.20030421 + Nlm_GetArgv@Base 6.1.20030421 + Nlm_GetChecksum@Base 6.1.20030421 + Nlm_GetDayTime@Base 6.1.20030421 + Nlm_GetElapsedTime@Base 6.1.20030421 + Nlm_GetEnvParam@Base 6.1.20030421 + Nlm_GetEnvParamEx@Base 6.1.20030421 + Nlm_GetErrLongText@Base 6.1.20030421 + Nlm_GetLanguage@Base 6.1.20030421 + Nlm_GetOpSysString@Base 6.1.20030421 + Nlm_GetScratchBuffer@Base 6.1.20030421 + Nlm_GetSecs@Base 6.1.20030421 + Nlm_HeapSort@Base 6.1.20030421 + Nlm_InitAppContext@Base 6.1.20030421 + Nlm_Int8ToString@Base 6.1.20030421 + Nlm_Int8tostr@Base 6.1.20030421 + Nlm_LabelCopy@Base 6.1.20030421 + Nlm_LabelCopyExtra@Base 6.1.20030421 + Nlm_LabelCopyNext@Base 6.1.20030421 + Nlm_LetterByte@Base 6.1.20030421 + Nlm_LnFactorial@Base 6.1.20030421 + Nlm_LnGamma@Base 6.1.20030421 + Nlm_LnGammaInt@Base 6.1.20030421 + Nlm_Log1p@Base 6.1.20030421 + Nlm_LogDerivative@Base 6.1.20030421 + Nlm_Ltostr@Base 6.1.20030421 + Nlm_Lwidth@Base 6.1.20030421 + Nlm_MD5Final@Base 6.1.20030421 + Nlm_MD5Init@Base 6.1.20030421 + Nlm_MD5Transform@Base 6.1.20030421 + Nlm_MD5Update@Base 6.1.20030421 + Nlm_MatrixColumn@Base 6.1.20030421 + Nlm_MatrixCompare@Base 6.1.20030421 + Nlm_MatrixCopy@Base 6.1.20030421 + Nlm_MatrixDelete@Base 6.1.20030421 + Nlm_MatrixInvert@Base 6.1.20030421 + Nlm_MatrixMultiply@Base 6.1.20030421 + Nlm_MatrixNew@Base 6.1.20030421 + Nlm_MatrixNode@Base 6.1.20030421 + Nlm_MatrixPrint@Base 6.1.20030421 + Nlm_MatrixRow@Base 6.1.20030421 + Nlm_MatrixSetColumn@Base 6.1.20030421 + Nlm_MatrixSetNode@Base 6.1.20030421 + Nlm_MatrixSetRow@Base 6.1.20030421 + Nlm_MatrixSolve@Base 6.1.20030421 + Nlm_MatrixTranspose@Base 6.1.20030421 + Nlm_MemCopy@Base 6.1.20030421 + Nlm_MemDup@Base 6.1.20030421 + Nlm_MemExtend@Base 6.1.20030421 + Nlm_MemFill@Base 6.1.20030421 + Nlm_MemFree@Base 6.1.20030421 + Nlm_MemGet@Base 6.1.20030421 + Nlm_MemMapAdvise@Base 6.1.20030421 + Nlm_MemMapAdvisePtr@Base 6.1.20030421 + Nlm_MemMapAvailable@Base 6.1.20030421 + Nlm_MemMapFini@Base 6.1.20030421 + Nlm_MemMapInit@Base 6.1.20030421 + Nlm_MemMore@Base 6.1.20030421 + Nlm_MemMove@Base 6.1.20030421 + Nlm_MemNew@Base 6.1.20030421 + Nlm_MemSearch@Base 6.1.20030421 + Nlm_MeshStringICmp@Base 6.1.20030421 + Nlm_Message@Base 6.1.20030421 + Nlm_MonitorFree@Base 6.1.20030421 + Nlm_MonitorIntNewEx@Base 6.1.20030421 + Nlm_MonitorIntValue@Base 6.1.20030421 + Nlm_MonitorStrNewEx@Base 6.1.20030421 + Nlm_MonitorStrValue@Base 6.1.20030421 + Nlm_MsgAlert@Base 6.1.20030421 + Nlm_MsgAlertStr@Base 6.1.20030421 + Nlm_NRBis@Base 6.1.20030421 + Nlm_NaturalStringCmp@Base 6.1.20120620 + Nlm_NaturalStringICmp@Base 6.1.20120620 + Nlm_Nint@Base 6.1.20030421 + Nlm_ParseCmdLineArguments@Base 6.1.20030421 + Nlm_PlatformName@Base 6.1.20030421 + Nlm_PolyGamma@Base 6.1.20030421 + Nlm_Powi@Base 6.1.20030421 + Nlm_ProgMon@Base 6.1.20030421 + Nlm_ProgramPath@Base 6.1.20030421 + Nlm_RandomNum@Base 6.1.20030421 + Nlm_RandomSeed@Base 6.1.20030421 + Nlm_ReleaseAppContext@Base 6.1.20030421 + Nlm_RemoveAppProperty@Base 6.1.20030421 + Nlm_RombergIntegrate@Base 6.1.20030421 + Nlm_SearchSubString@Base 6.1.20100808 + Nlm_SetAppParam@Base 6.1.20030421 + Nlm_SetAppProperty@Base 6.1.20030421 + Nlm_SetBeepHook@Base 6.1.20030421 + Nlm_SetFileOpenHook@Base 6.1.20030421 + Nlm_SetHeapLimit@Base 6.1.20030421 + Nlm_SetMemFailFlag@Base 6.1.20160908 + Nlm_SetMessageHook@Base 6.1.20030421 + Nlm_SetMonitorHook@Base 6.1.20030421 + Nlm_SetProgMon@Base 6.1.20030421 + Nlm_SetupArguments@Base 6.1.20030421 + Nlm_SetupSubString@Base 6.1.20100808 + Nlm_Sgml2Ascii@Base 6.1.20030421 + Nlm_Sgml2AsciiLen@Base 6.1.20030421 + Nlm_SgmlLoadTable@Base 6.1.20030421 + Nlm_StableMergeSort@Base 6.1.20110713 + Nlm_StdProgMon@Base 6.1.20030421 + Nlm_StopWatchFree@Base 6.1.20030421 + Nlm_StopWatchNew@Base 6.1.20030421 + Nlm_StopWatchStart@Base 6.1.20030421 + Nlm_StopWatchStop@Base 6.1.20030421 + Nlm_StrCnt@Base 6.1.20030421 + Nlm_StrICmp@Base 6.1.20030421 + Nlm_StrIPCmp@Base 6.1.20030421 + Nlm_StrLower@Base 6.1.20030421 + Nlm_StrMove@Base 6.1.20030421 + Nlm_StrNICmp@Base 6.1.20030421 + Nlm_StrNIPCmp@Base 6.1.20030421 + Nlm_StrSave@Base 6.1.20030421 + Nlm_StrUpper@Base 6.1.20030421 + Nlm_StringCSpn@Base 6.1.20030421 + Nlm_StringCat@Base 6.1.20030421 + Nlm_StringChr@Base 6.1.20030421 + Nlm_StringCmp@Base 6.1.20030421 + Nlm_StringCnt@Base 6.1.20030421 + Nlm_StringCpy@Base 6.1.20030421 + Nlm_StringDoesHaveText@Base 6.1.20031028 + Nlm_StringHasNoText@Base 6.1.20030421 + Nlm_StringICmp@Base 6.1.20030421 + Nlm_StringISearch@Base 6.1.20030421 + Nlm_StringIsAllDigits@Base 6.1.20120620 + Nlm_StringIsAllLowerCase@Base 6.1.20120620 + Nlm_StringIsAllPunctuation@Base 6.1.20120620 + Nlm_StringIsAllUpperCase@Base 6.1.20120620 + Nlm_StringLen@Base 6.1.20030421 + Nlm_StringLower@Base 6.1.20030421 + Nlm_StringMove@Base 6.1.20030421 + Nlm_StringNCat@Base 6.1.20030421 + Nlm_StringNCmp@Base 6.1.20030421 + Nlm_StringNCpy@Base 6.1.20030421 + Nlm_StringNCpy_0@Base 6.1.20030421 + Nlm_StringNICmp@Base 6.1.20030421 + Nlm_StringPBrk@Base 6.1.20030421 + Nlm_StringPrintable@Base 6.1.20030421 + Nlm_StringRChr@Base 6.1.20030421 + Nlm_StringSave@Base 6.1.20030421 + Nlm_StringSaveNoNull@Base 6.1.20030421 + Nlm_StringSearch@Base 6.1.20030421 + Nlm_StringSpn@Base 6.1.20030421 + Nlm_StringStr@Base 6.1.20030421 + Nlm_StringToInt8@Base 6.1.20030421 + Nlm_StringToUint8@Base 6.1.20030421 + Nlm_StringTok@Base 6.1.20030421 + Nlm_StringTokMT@Base 6.1.20030421 + Nlm_StringUpper@Base 6.1.20030421 + Nlm_SwitchLong@Base 6.1.20030421 + Nlm_SwitchLongBuff@Base 6.1.20030421 + Nlm_SwitchUint2@Base 6.1.20030421 + Nlm_SwitchUint2Buff@Base 6.1.20030421 + Nlm_SwitchUint4@Base 6.1.20030421 + Nlm_SwitchUint4Buff@Base 6.1.20030421 + Nlm_TSPrintf@Base 6.1.20030421 + Nlm_TSPrintfArgs@Base 6.1.20030421 + Nlm_TmpNam@Base 6.1.20030421 + Nlm_Trace@Base 6.1.20030421 + Nlm_TraceStr@Base 6.1.20030421 + Nlm_TransientSetAppParam@Base 6.1.20030421 + Nlm_TriGamma@Base 6.1.20030421 + Nlm_TrimSpacesAroundString@Base 6.1.20030421 + Nlm_Uint8ToString@Base 6.1.20030421 + Nlm_Ultostr@Base 6.1.20030421 + Nlm_Ulwidth@Base 6.1.20030421 + Nlm_rule_line@Base 6.1.20030421 + Nlm_stream2text@Base 6.1.20030421 + Nlm_text2stream@Base 6.1.20030421 + NoCaseSkipPastString@Base 6.1.20030421 + NoCaseSkipToString@Base 6.1.20030421 + NodeListAppend@Base 6.1.20030421 + NodeListDelete@Base 6.1.20030421 + NodeListFind@Base 6.1.20030421 + NodeListFree@Base 6.1.20030421 + NodeListInsert@Base 6.1.20030421 + NodeListLen@Base 6.1.20030421 + NodeListNew@Base 6.1.20030421 + NodeListRead@Base 6.1.20030421 + NodeListReplace@Base 6.1.20030421 + NodeListWrite@Base 6.1.20030421 + POLLABLE_FromLSOCK@Base 6.1.20031028 + POLLABLE_FromSOCK@Base 6.1.20031028 + POLLABLE_FromTRIGGER@Base 6.1.20070822 + POLLABLE_Poll@Base 6.1.20031028 + POLLABLE_ToLSOCK@Base 6.1.20031028 + POLLABLE_ToSOCK@Base 6.1.20031028 + POLLABLE_ToTRIGGER@Base 6.1.20070822 + ParseXmlString@Base 6.1.20110713 + QUERY_AddToQueue@Base 6.1.20030421 + QUERY_AsnIoConnClose@Base 6.1.20030421 + QUERY_AsnIoConnOpen@Base 6.1.20030421 + QUERY_CheckQueue@Base 6.1.20030421 + QUERY_CloseQueue@Base 6.1.20030421 + QUERY_CopyFileToQuery@Base 6.1.20030421 + QUERY_CopyResultsToFile@Base 6.1.20030421 + QUERY_CopyResultsToString@Base 6.1.20110713 + QUERY_OpenServiceQuery@Base 6.1.20030421 + QUERY_OpenServiceQueryEx@Base 6.1.20060507 + QUERY_OpenUrlQuery@Base 6.1.20030421 + QUERY_QueueSize@Base 6.1.20100808 + QUERY_SendQuery@Base 6.1.20030421 + QUERY_UrlAsynchronousQuery@Base 6.1.20110713 + QUERY_UrlSynchronousQuery@Base 6.1.20110713 + REG_AddRef@Base 6.1.20030421 + REG_Create@Base 6.1.20030421 + REG_Delete@Base 6.1.20030421 + REG_Get@Base 6.1.20030421 + REG_Reset@Base 6.1.20030421 + REG_Set@Base 6.1.20030421 + REG_c2c@Base 6.1.20030421 + ReleaseAppErrInfo@Base 6.1.20030421 + ReleaseAppMsgInfo@Base 6.1.20030421 + SERVICE_CreateConnectorEx@Base 6.1.20030421 + SERV_AddFirewallPort@Base 6.1.20120620 + SERV_Close@Base 6.1.20030421 + SERV_CopyInfo@Base 6.1.20060301 + SERV_CopyInfoEx@Base 6.1.20060301 + SERV_CreateDnsInfo@Base 6.1.20030421 + SERV_CreateDnsInfoEx@Base 6.1.20050828 + SERV_CreateFirewallInfo@Base 6.1.20030421 + SERV_CreateFirewallInfoEx@Base 6.1.20050828 + SERV_CreateHttpInfo@Base 6.1.20030421 + SERV_CreateHttpInfoEx@Base 6.1.20050828 + SERV_CreateNcbidInfo@Base 6.1.20030421 + SERV_CreateNcbidInfoEx@Base 6.1.20050828 + SERV_CreateStandaloneInfo@Base 6.1.20030421 + SERV_CreateStandaloneInfoEx@Base 6.1.20050828 + SERV_CurrentName@Base 6.1.20050828 + SERV_DISPD_Open@Base 6.1.20030421 + SERV_DoFastOpens@Base 6.1.20070822 + SERV_EqualInfo@Base 6.1.20030421 + SERV_GetInfo@Base 6.1.20050828 + SERV_GetInfoEx@Base 6.1.20030421 + SERV_GetInfoP@Base 6.1.20030421 + SERV_GetInfoSimple@Base 6.1.20160908 + SERV_GetNextInfo@Base 6.1.20050828 + SERV_GetNextInfoEx@Base 6.1.20030421 + SERV_InitFirewallPorts@Base 6.1.20160908 + SERV_IsFirewallPort@Base 6.1.20120620 + SERV_LBOS_Open@Base 6.1.20160908 + SERV_LBSMD_Open@Base 6.1.20030421 + SERV_LOCAL_Open@Base 6.1.20060507 + SERV_MapperName@Base 6.1.20030421 + SERV_NameOfInfo@Base 6.1.20060301 + SERV_Open@Base 6.1.20050828 + SERV_OpenEx@Base 6.1.20030421 + SERV_OpenP@Base 6.1.20031028 + SERV_OpenSimple@Base 6.1.20030421 + SERV_Penalize@Base 6.1.20030421 + SERV_PenalizeEx@Base 6.1.20120620 + SERV_Print@Base 6.1.20030421 + SERV_PrintFirewallPorts@Base 6.1.20160908 + SERV_ReadInfo@Base 6.1.20030421 + SERV_ReadInfoEx@Base 6.1.20050828 + SERV_ReadType@Base 6.1.20030421 + SERV_Rerate@Base 6.1.20090301 + SERV_Reset@Base 6.1.20030421 + SERV_ServerPort@Base 6.1.20090301 + SERV_ServiceName@Base 6.1.20030421 + SERV_SizeOfInfo@Base 6.1.20030421 + SERV_TypeStr@Base 6.1.20030421 + SERV_Update@Base 6.1.20030421 + SERV_WriteInfo@Base 6.1.20030421 + SOCK_Abort@Base 6.1.20031028 + SOCK_AllowSigPipeAPI@Base 6.1.20030421 + SOCK_Close@Base 6.1.20030421 + SOCK_CloseEx@Base 6.1.20040204 + SOCK_CloseOSHandle@Base 6.1.20120620 + SOCK_Create@Base 6.1.20030421 + SOCK_CreateConnector@Base 6.1.20030421 + SOCK_CreateConnectorEx@Base 6.1.20030421 + SOCK_CreateConnectorOnTop@Base 6.1.20030421 + SOCK_CreateConnectorOnTopEx@Base 6.1.20110713 + SOCK_CreateEx@Base 6.1.20030421 + SOCK_CreateInternal@Base 6.1.20160908 + SOCK_CreateOnTop@Base 6.1.20030421 + SOCK_CreateOnTopEx@Base 6.1.20031028 + SOCK_CreateOnTopInternal@Base 6.1.20160908 + SOCK_CreateUNIX@Base 6.1.20050429 + SOCK_DisableOSSendDelay@Base 6.1.20050429 + SOCK_GetCount@Base 6.1.20110713 + SOCK_GetLocalHostAddress@Base 6.1.20070822 + SOCK_GetLocalPort@Base 6.1.20080302 + SOCK_GetLocalPortEx@Base 6.1.20100808 + SOCK_GetLoopbackAddress@Base 6.1.20050828 + SOCK_GetOSHandle@Base 6.1.20030421 + SOCK_GetOSHandleEx@Base 6.1.20120620 + SOCK_GetPeerAddress@Base 6.1.20030421 + SOCK_GetPeerAddressString@Base 6.1.20031028 + SOCK_GetPeerAddressStringEx@Base 6.1.20090719 + SOCK_GetPosition@Base 6.1.20110713 + SOCK_GetRemotePort@Base 6.1.20110713 + SOCK_GetTimeout@Base 6.1.20030421 + SOCK_GetTotalCount@Base 6.1.20110713 + SOCK_HostPortToString@Base 6.1.20060301 + SOCK_HostToNetLong@Base 6.1.20030421 + SOCK_HostToNetShort@Base 6.1.20030421 + SOCK_InitializeAPI@Base 6.1.20030421 + SOCK_IsClientSide@Base 6.1.20030421 + SOCK_IsDatagram@Base 6.1.20030421 + SOCK_IsLoopbackAddress@Base 6.1.20160908 + SOCK_IsSecure@Base 6.1.20081116 + SOCK_IsServerSide@Base 6.1.20030421 + SOCK_IsUNIX@Base 6.1.20050429 + SOCK_OSHandleSize@Base 6.1.20110713 + SOCK_Poll@Base 6.1.20030421 + SOCK_Pushback@Base 6.1.20160908 + SOCK_Read@Base 6.1.20030421 + SOCK_ReadLine@Base 6.1.20050429 + SOCK_Reconnect@Base 6.1.20030421 + SOCK_SetCork@Base 6.1.20110713 + SOCK_SetDataLogging@Base 6.1.20030421 + SOCK_SetDataLoggingAPI@Base 6.1.20030421 + SOCK_SetErrHookAPI@Base 6.1.20160908 + SOCK_SetIOWaitSysAPI@Base 6.1.20100808 + SOCK_SetInterruptOnSignal@Base 6.1.20030421 + SOCK_SetInterruptOnSignalAPI@Base 6.1.20030421 + SOCK_SetReadOnWrite@Base 6.1.20030421 + SOCK_SetReadOnWriteAPI@Base 6.1.20030421 + SOCK_SetReuseAddress@Base 6.1.20031028 + SOCK_SetReuseAddressAPI@Base 6.1.20031028 + SOCK_SetSelectInternalRestartTimeout@Base 6.1.20040204 + SOCK_SetTimeout@Base 6.1.20030421 + SOCK_SetupSSL@Base 6.1.20081116 + SOCK_SetupSSLEx@Base 6.1.20160908 + SOCK_Shutdown@Base 6.1.20030421 + SOCK_ShutdownAPI@Base 6.1.20030421 + SOCK_Status@Base 6.1.20030421 + SOCK_StringToHostPort@Base 6.1.20060301 + SOCK_StringToHostPortEx@Base 6.1.20160908 + SOCK_StripToPattern@Base 6.1.20030421 + SOCK_Wait@Base 6.1.20030421 + SOCK_Write@Base 6.1.20030421 + SOCK_gethostbyaddr@Base 6.1.20030421 + SOCK_gethostbyaddrEx@Base 6.1.20110713 + SOCK_gethostbyname@Base 6.1.20030421 + SOCK_gethostbynameEx@Base 6.1.20110713 + SOCK_gethostname@Base 6.1.20030421 + SOCK_gethostnameEx@Base 6.1.20110713 + SOCK_htonl@Base 6.1.20060301 + SOCK_htons@Base 6.1.20060301 + SOCK_isip@Base 6.1.20070822 + SOCK_isipEx@Base 6.1.20070822 + SOCK_ntoa@Base 6.1.20030421 + SendMailInfo_InitEx@Base 6.1.20100808 + SetAppParamBoolean@Base 6.1.20030421 + SetAppParamLong@Base 6.1.20030421 + SkipChar@Base 6.1.20030421 + SkipPastChar@Base 6.1.20030421 + SkipPastString@Base 6.1.20030421 + SkipSet@Base 6.1.20030421 + SkipSpaces@Base 6.1.20030421 + SkipToChar@Base 6.1.20030421 + SkipToSet@Base 6.1.20030421 + SkipToSpace@Base 6.1.20030421 + SkipToString@Base 6.1.20030421 + StrCpyPtr@Base 6.1.20030421 + StrDupPtr@Base 6.1.20030421 + StrMatch@Base 6.1.20030421 + StringDiff@Base 6.1.20030421 + StringDiffNum@Base 6.1.20030421 + StringEnd@Base 6.1.20030421 + StringSub@Base 6.1.20030421 + StringSubSet@Base 6.1.20030421 + StringSubString@Base 6.1.20030421 + StripSpaces@Base 6.1.20030421 + TRIGGER_Close@Base 6.1.20070822 + TRIGGER_Create@Base 6.1.20070822 + TRIGGER_IsSet@Base 6.1.20070822 + TRIGGER_Reset@Base 6.1.20070822 + TRIGGER_Set@Base 6.1.20070822 + TruncateString@Base 6.1.20030421 + TruncateStringCopy@Base 6.1.20030421 + URL_Connect@Base 6.1.20030421 + URL_ConnectEx@Base 6.1.20081116 + URL_Decode@Base 6.1.20030421 + URL_DecodeEx@Base 6.1.20030421 + URL_Encode@Base 6.1.20030421 + URL_EncodeEx@Base 6.1.20110713 + UTIL_Adler32_Update@Base 6.1.20100808 + UTIL_CRC32_Update@Base 6.1.20100808 + UTIL_GenerateHMAC@Base 6.1.20160908 + UTIL_MatchesMask@Base 6.1.20050828 + UTIL_MatchesMaskEx@Base 6.1.20060507 + UTIL_NcbiLocalHostName@Base 6.1.20080302 + UTIL_PrintableString@Base 6.1.20090301 + UTIL_PrintableStringSize@Base 6.1.20090301 + Uint8ToBytes@Base 6.1.20030421 + ValNodeAdd@Base 6.1.20030421 + ValNodeAddBigInt@Base 6.1.20030421 + ValNodeAddBoolean@Base 6.1.20030421 + ValNodeAddFloat@Base 6.1.20030421 + ValNodeAddFunction@Base 6.1.20030421 + ValNodeAddInt@Base 6.1.20030421 + ValNodeAddPointer@Base 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DocSumAsnWrite@Base 6.1.20030421 + DocSumFree@Base 6.1.20030421 + DocSumNew@Base 6.1.20030421 + EntrezInfoAsnRead@Base 6.1.20030421 + EntrezInfoAsnWrite@Base 6.1.20030421 + EntrezInfoFree@Base 6.1.20030421 + EntrezInfoMerge@Base 6.1.20030421 + GetCurMedia@Base 6.1.20030421 + ParseMedia@Base 6.1.20030421 + PreInitMedia@Base 6.1.20030421 + SelectDataLinksByTypes@Base 6.1.20030421 + SelectDataSource@Base 6.1.20030421 + SelectDataSourceByType@Base 6.1.20030421 + SelectNextDataSource@Base 6.1.20030421 + SetCurMedia@Base 6.1.20030421 + SetSoleMedia@Base 6.1.20030421 + _dir@Base 6.1.20030421 + _finfo@Base 6.1.20030421 + _nouveau@Base 6.1.20030421 + cd3_CdDetailedInfo@Base 6.1.20030421 + cd3_CdDocAsnClose@Base 6.1.20030421 + cd3_CdDocAsnOpen@Base 6.1.20030421 + cd3_CdEnumFiles@Base 6.1.20030421 + cd3_CdFini@Base 6.1.20030421 + cd3_CdGetDocSum@Base 6.1.20030421 + cd3_CdGetInfo@Base 6.1.20030421 + cd3_CdInit@Base 6.1.20030421 + cd3_CdLinkUidGet@Base 6.1.20030421 + cd3_CdTermScan@Base 6.1.20030421 + cd3_CdTestPath@Base 6.1.20030421 + cd3_CdTrmFind@Base 6.1.20030421 + cd3_CdTrmLookup@Base 6.1.20030421 + cd3_CdTrmPageCt@Base 6.1.20030421 + cd3_CdTrmUidsFil@Base 6.1.20030421 + cd3_CdTrmUidsMem@Base 6.1.20030421 + cd3_EntrezInfoOpen@Base 6.1.20030421 +libncbiid1.so.6 libncbi6 #MINVER# + ID1ArcgGIStateGet@Base 6.1.20030421 + ID1ArchFini@Base 6.1.20030421 + ID1ArchGIGet@Base 6.1.20030421 + ID1ArchGIHistGet@Base 6.1.20030421 + ID1ArchInit@Base 6.1.20030421 + ID1ArchSeqEntryGet@Base 6.1.20030421 + ID1ArchSeqIdsGet@Base 6.1.20030421 + ID1BioseqFetchDisable@Base 6.1.20030421 + ID1BioseqFetchEnable@Base 6.1.20030421 + ID1FindSeqId@Base 6.1.20030421 + ID1Fini@Base 6.1.20030421 + ID1Init@Base 6.1.20030421 + ID1SeqEntryGet@Base 6.1.20030421 + ID1SeqEntryInfoAsnRead@Base 6.1.20030421 + ID1SeqEntryInfoAsnWrite@Base 6.1.20030421 + ID1SeqEntryInfoFree@Base 6.1.20030421 + ID1SeqEntryInfoNew@Base 6.1.20030421 + ID1SeqHistAsnRead@Base 6.1.20030421 + ID1SeqHistAsnWrite@Base 6.1.20030421 + ID1SeqHistFree@Base 6.1.20030421 + ID1SeqHistNew@Base 6.1.20030421 + ID1SeqIdForGI@Base 6.1.20030421 + ID1blobInfoAsnRead@Base 6.1.20030421 + ID1blobInfoAsnWrite@Base 6.1.20030421 + ID1blobInfoFree@Base 6.1.20030421 + ID1blobInfoNew@Base 6.1.20030421 + ID1serverBackAsnRead@Base 6.1.20030421 + ID1serverBackAsnWrite@Base 6.1.20030421 + ID1serverBackFree@Base 6.1.20030421 + ID1serverDebugAsnRead@Base 6.1.20030421 + ID1serverDebugAsnWrite@Base 6.1.20030421 + ID1serverDebugFree@Base 6.1.20030421 + ID1serverMaxcomplexAsnRead@Base 6.1.20030421 + ID1serverMaxcomplexAsnWrite@Base 6.1.20030421 + ID1serverMaxcomplexFree@Base 6.1.20030421 + ID1serverMaxcomplexNew@Base 6.1.20030421 + ID1serverRequestAsnRead@Base 6.1.20030421 + ID1serverRequestAsnWrite@Base 6.1.20030421 + ID1serverRequestFree@Base 6.1.20030421 + SeqHistPrintTable@Base 6.1.20030421 + id1genAsnLoad@Base 6.1.20030421 + id_print_gi_state@Base 6.1.20030421 +libncbimla.so.6 libncbi6 #MINVER# + AllUpperCase@Base 6.1.20030421 + 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libncbi6 #MINVER# + AddLineKin@Base 6.1.20030421 + AddPFBSelect@Base 6.1.20030421 + AlgorithmTypeAsnRead@Base 6.1.20031028 + AlgorithmTypeAsnWrite@Base 6.1.20031028 + AlgorithmTypeFree@Base 6.1.20031028 + AlgorithmTypeNew@Base 6.1.20031028 + AlignAnnotAsnRead@Base 6.1.20030421 + AlignAnnotAsnWrite@Base 6.1.20030421 + AlignAnnotFree@Base 6.1.20030421 + AlignAnnotNew@Base 6.1.20030421 + AlignAnnotSetAsnRead@Base 6.1.20030421 + AlignAnnotSetAsnWrite@Base 6.1.20030421 + AlignAnnotSetFree@Base 6.1.20030421 + AlignStatsAsnRead@Base 6.1.20030421 + AlignStatsAsnWrite@Base 6.1.20030421 + AlignStatsFree@Base 6.1.20030421 + AlignStatsNew@Base 6.1.20030421 + AlternateConformationIdsAsnRead@Base 6.1.20030421 + AlternateConformationIdsAsnWrite@Base 6.1.20030421 + AlternateConformationIdsFree@Base 6.1.20030421 + AminoAcidName@Base 6.1.20030421 + AminoAcidNameFromIdx@Base 6.1.20030421 + AnisotropicTemperatureFactorsAsnRead@Base 6.1.20030421 + AnisotropicTemperatureFactorsAsnWrite@Base 6.1.20030421 + AnisotropicTemperatureFactorsFree@Base 6.1.20030421 + AnisotropicTemperatureFactorsNew@Base 6.1.20030421 + AreNeighborsOn@Base 6.1.20030421 + AssignAtomLocId@Base 6.1.20030421 + AssignBackBone@Base 6.1.20030421 + AssignIons@Base 6.1.20030421 + AssignSurfaceContents@Base 6.1.20030421 + AssignVirtual@Base 6.1.20030421 + AtomAsnRead@Base 6.1.20030421 + AtomAsnWrite@Base 6.1.20030421 + AtomDistanceSq@Base 6.1.20030421 + AtomFree@Base 6.1.20030421 + AtomFromMMDBIndex@Base 6.1.20030421 + AtomNew@Base 6.1.20030421 + AtomPntrAsnRead@Base 6.1.20030421 + AtomPntrAsnWrite@Base 6.1.20030421 + AtomPntrFree@Base 6.1.20030421 + AtomPntrNew@Base 6.1.20030421 + AtomPntrSetAsnRead@Base 6.1.20030421 + AtomPntrSetAsnWrite@Base 6.1.20030421 + AtomPntrSetFree@Base 6.1.20030421 + AtomPntrsAsnRead@Base 6.1.20030421 + AtomPntrsAsnWrite@Base 6.1.20030421 + AtomPntrsFree@Base 6.1.20030421 + AtomPntrsNew@Base 6.1.20030421 + AtomicCoordinatesAsnRead@Base 6.1.20030421 + AtomicCoordinatesAsnWrite@Base 6.1.20030421 + AtomicCoordinatesFree@Base 6.1.20030421 + AtomicCoordinatesNew@Base 6.1.20030421 + AtomicOccupanciesAsnRead@Base 6.1.20030421 + AtomicOccupanciesAsnWrite@Base 6.1.20030421 + AtomicOccupanciesFree@Base 6.1.20030421 + AtomicOccupanciesNew@Base 6.1.20030421 + AtomicTemperatureFactorsAsnRead@Base 6.1.20030421 + AtomicTemperatureFactorsAsnWrite@Base 6.1.20030421 + AtomicTemperatureFactorsFree@Base 6.1.20030421 + AuthorListPDB@Base 6.1.20030421 + BelongsToSubset@Base 6.1.20030421 + BiomolDescrAsnRead@Base 6.1.20030421 + BiomolDescrAsnWrite@Base 6.1.20030421 + BiomolDescrFree@Base 6.1.20030421 + BiosToSeq@Base 6.1.20030421 + BiostrToSeqAnnotSet@Base 6.1.20030421 + Biostruc2Modelstruc@Base 6.1.20030421 + BiostrucAddFeature@Base 6.1.20030421 + BiostrucAlignAsnRead@Base 6.1.20030421 + BiostrucAlignAsnWrite@Base 6.1.20030421 + BiostrucAlignFree@Base 6.1.20030421 + BiostrucAlignNew@Base 6.1.20030421 + BiostrucAlignSeqAsnRead@Base 6.1.20030421 + BiostrucAlignSeqAsnWrite@Base 6.1.20030421 + BiostrucAlignSeqFree@Base 6.1.20030421 + BiostrucAlignSeqNew@Base 6.1.20030421 + BiostrucAnnotSetAsnRead@Base 6.1.20030421 + BiostrucAnnotSetAsnWrite@Base 6.1.20030421 + BiostrucAnnotSetFree@Base 6.1.20030421 + BiostrucAnnotSetNew@Base 6.1.20030421 + BiostrucAnnotSetToSeqAnnot@Base 6.1.20030421 + BiostrucAsnGet@Base 6.1.20030421 + BiostrucAsnRead@Base 6.1.20030421 + BiostrucAsnWrite@Base 6.1.20030421 + BiostrucAvail@Base 6.1.20030421 + BiostrucDescrAsnRead@Base 6.1.20030421 + BiostrucDescrAsnWrite@Base 6.1.20030421 + BiostrucDescrFree@Base 6.1.20030421 + BiostrucFeatureAsnRead@Base 6.1.20030421 + BiostrucFeatureAsnWrite@Base 6.1.20030421 + BiostrucFeatureFree@Base 6.1.20030421 + BiostrucFeatureNew@Base 6.1.20030421 + BiostrucFeatureSetAsnRead@Base 6.1.20030421 + BiostrucFeatureSetAsnWrite@Base 6.1.20030421 + BiostrucFeatureSetDescrAsnRead@Base 6.1.20030421 + BiostrucFeatureSetDescrAsnWrite@Base 6.1.20030421 + BiostrucFeatureSetDescrFree@Base 6.1.20030421 + BiostrucFeatureSetFree@Base 6.1.20030421 + BiostrucFeatureSetNew@Base 6.1.20030421 + BiostrucFree@Base 6.1.20030421 + BiostrucGraphAsnRead@Base 6.1.20030421 + BiostrucGraphAsnWrite@Base 6.1.20030421 + BiostrucGraphFree@Base 6.1.20030421 + BiostrucGraphNew@Base 6.1.20030421 + BiostrucGraphPntrAsnRead@Base 6.1.20030421 + BiostrucGraphPntrAsnWrite@Base 6.1.20030421 + BiostrucGraphPntrFree@Base 6.1.20030421 + BiostrucGraphPntrNew@Base 6.1.20030421 + BiostrucHistoryAsnRead@Base 6.1.20030421 + BiostrucHistoryAsnWrite@Base 6.1.20030421 + BiostrucHistoryFree@Base 6.1.20030421 + BiostrucHistoryNew@Base 6.1.20030421 + BiostrucIdAsnRead@Base 6.1.20030421 + BiostrucIdAsnWrite@Base 6.1.20030421 + BiostrucIdFree@Base 6.1.20030421 + BiostrucModel2ModelStruc@Base 6.1.20030421 + BiostrucModelAsnRead@Base 6.1.20030421 + BiostrucModelAsnWrite@Base 6.1.20030421 + BiostrucModelFree@Base 6.1.20030421 + BiostrucModelNew@Base 6.1.20030421 + BiostrucMoleculePntrAsnRead@Base 6.1.20110713 + BiostrucMoleculePntrAsnWrite@Base 6.1.20110713 + BiostrucMoleculePntrFree@Base 6.1.20110713 + BiostrucMoleculePntrNew@Base 6.1.20110713 + BiostrucNew@Base 6.1.20030421 + BiostrucReplaceAsnRead@Base 6.1.20030421 + BiostrucReplaceAsnWrite@Base 6.1.20030421 + BiostrucReplaceFree@Base 6.1.20030421 + BiostrucReplaceNew@Base 6.1.20030421 + BiostrucResidueGraphSetAsnRead@Base 6.1.20030421 + BiostrucResidueGraphSetAsnWrite@Base 6.1.20030421 + BiostrucResidueGraphSetFree@Base 6.1.20030421 + BiostrucResidueGraphSetNew@Base 6.1.20030421 + BiostrucResidueGraphSetPntrAsnRead@Base 6.1.20030421 + BiostrucResidueGraphSetPntrAsnWrite@Base 6.1.20030421 + BiostrucResidueGraphSetPntrFree@Base 6.1.20030421 + BiostrucResidueGraphSetPntrNew@Base 6.1.20030421 + BiostrucScriptAsnRead@Base 6.1.20030421 + BiostrucScriptAsnWrite@Base 6.1.20030421 + BiostrucScriptFree@Base 6.1.20030421 + BiostrucScriptStepAsnRead@Base 6.1.20030421 + BiostrucScriptStepAsnWrite@Base 6.1.20030421 + BiostrucScriptStepFree@Base 6.1.20030421 + BiostrucScriptStepNew@Base 6.1.20030421 + BiostrucSeqAsnRead@Base 6.1.20030421 + BiostrucSeqAsnWrite@Base 6.1.20030421 + BiostrucSeqFree@Base 6.1.20030421 + BiostrucSeqNew@Base 6.1.20030421 + BiostrucSeqsAlignsCddAsnRead@Base 6.1.20030421 + BiostrucSeqsAlignsCddAsnWrite@Base 6.1.20030421 + BiostrucSeqsAlignsCddFree@Base 6.1.20030421 + BiostrucSeqsAlignsCddNew@Base 6.1.20030421 + BiostrucSeqsAsnRead@Base 6.1.20030421 + BiostrucSeqsAsnWrite@Base 6.1.20030421 + BiostrucSeqsFree@Base 6.1.20030421 + BiostrucSeqsNew@Base 6.1.20030421 + BiostrucSetAsnRead@Base 6.1.20030421 + BiostrucSetAsnWrite@Base 6.1.20030421 + BiostrucSetFree@Base 6.1.20030421 + BiostrucSetNew@Base 6.1.20030421 + BiostrucSourceAsnRead@Base 6.1.20030421 + BiostrucSourceAsnWrite@Base 6.1.20030421 + BiostrucSourceFree@Base 6.1.20030421 + BiostrucSourceNew@Base 6.1.20030421 + BrickAsnRead@Base 6.1.20030421 + BrickAsnWrite@Base 6.1.20030421 + BrickFree@Base 6.1.20030421 + BrickNew@Base 6.1.20030421 + BundleSeqsAlignsAsnRead@Base 6.1.20030421 + BundleSeqsAlignsAsnWrite@Base 6.1.20030421 + BundleSeqsAlignsFree@Base 6.1.20030421 + BundleSeqsAlignsNew@Base 6.1.20030421 + Call3DColorProc@Base 6.1.20030421 + CameraAsnRead@Base 6.1.20030421 + CameraAsnWrite@Base 6.1.20030421 + CameraFree@Base 6.1.20030421 + CameraNew@Base 6.1.20030421 + CddAccFromPssmId@Base 6.1.20030421 + CddAlignInform@Base 6.1.20030421 + CddAsnRead@Base 6.1.20030421 + CddAsnWrite@Base 6.1.20030421 + CddAssignDescr@Base 6.1.20030421 + CddAssignProfileRange@Base 6.1.20030421 + CddBioseqCopy@Base 6.1.20030421 + CddBookRefAsnRead@Base 6.1.20031028 + CddBookRefAsnWrite@Base 6.1.20031028 + CddBookRefFree@Base 6.1.20031028 + CddBookRefNew@Base 6.1.20031028 + CddCalcPSSM@Base 6.1.20030421 + CddCalculateQuerySim@Base 6.1.20030421 + CddCalculateTriangle@Base 6.1.20030421 + CddCheckForRepeats@Base 6.1.20030421 + CddConsensus@Base 6.1.20030421 + CddCopyMSLDenDiag@Base 6.1.20030421 + CddCount3DAlignments@Base 6.1.20030421 + CddCountDenDiagSeqAligns@Base 6.1.20030421 + CddCountResTypes@Base 6.1.20040204 + CddCountSeqAligns@Base 6.1.20030421 + CddCposComp@Base 6.1.20030421 + CddCposComputation@Base 6.1.20030421 + CddDegapSeqAlign@Base 6.1.20030421 + CddDenDiagCposComp2@Base 6.1.20030421 + CddDenDiagCposComp2KBP@Base 6.1.20030421 + CddDenDiagCposComputation@Base 6.1.20030421 + CddDescrAsnRead@Base 6.1.20030421 + CddDescrAsnWrite@Base 6.1.20030421 + CddDescrFree@Base 6.1.20030421 + CddDescrSetAsnRead@Base 6.1.20030421 + CddDescrSetAsnWrite@Base 6.1.20030421 + CddDescrSetFree@Base 6.1.20030421 + CddDumpPMLinks@Base 6.1.20030421 + CddDumpTaxLinks@Base 6.1.20030421 + CddDumpXML@Base 6.1.20030421 + CddExpAlignAlloc@Base 6.1.20030421 + CddExpAlignFree@Base 6.1.20030421 + CddExpAlignNew@Base 6.1.20030421 + CddExpAlignToSeqAlign@Base 6.1.20030421 + CddExtractBioseq@Base 6.1.20030421 + CddFeaturesAreConsistent@Base 6.1.20030421 + CddFillBlanksInString@Base 6.1.20030421 + CddFindBioseqInSeqEntry@Base 6.1.20030421 + CddFindMMDBIdInBioseq@Base 6.1.20030421 + CddFindSip@Base 6.1.20030421 + CddFree@Base 6.1.20030421 + CddFreeCarefully@Base 6.1.20030421 + CddGetAccession@Base 6.1.20030421 + CddGetAlignmentLength@Base 6.1.20030421 + CddGetAnnotNames@Base 6.1.20030421 + CddGetCreateDate@Base 6.1.20030421 + CddGetDescr@Base 6.1.20030421 + CddGetFeatLocList@Base 6.1.20030421 + CddGetNewIndexForThreading@Base 6.1.20030421 + CddGetOrgRef@Base 6.1.20030421 + CddGetPairId@Base 6.1.20030421 + CddGetPdbSeqId@Base 6.1.20030421 + CddGetPmIds@Base 6.1.20030421 + CddGetProperBlocks@Base 6.1.20030421 + CddGetPssmId@Base 6.1.20030421 + CddGetSource@Base 6.1.20030421 + CddGetSourceId@Base 6.1.20030421 + CddGetStatus@Base 6.1.20030421 + CddGetUpdateDate@Base 6.1.20030421 + CddGetVersion@Base 6.1.20030421 + CddHas3DSuperpos@Base 6.1.20030421 + CddHasAnnotation@Base 6.1.20030421 + CddHasConsensus@Base 6.1.20030421 + CddHasDescription@Base 6.1.20030421 + CddHasPendingAlignments@Base 6.1.20030421 + CddIdAsnRead@Base 6.1.20030421 + CddIdAsnWrite@Base 6.1.20030421 + CddIdFree@Base 6.1.20030421 + CddIdSetAsnRead@Base 6.1.20030421 + CddIdSetAsnWrite@Base 6.1.20030421 + CddIdSetFree@Base 6.1.20030421 + CddIdxDataLink@Base 6.1.20030421 + CddIdxDataNew@Base 6.1.20030421 + CddKillDescr@Base 6.1.20030421 + CddMSLDenDiagToMSLDenSeg@Base 6.1.20030421 + CddMSLDenDiagToMULDenDiag@Base 6.1.20030421 + CddMSLDenSegToMSLDenDiag@Base 6.1.20030421 + CddMSLMixedToMSLDenDiag@Base 6.1.20030421 + CddMasterIs3D@Base 6.1.20030421 + CddMostDiverse@Base 6.1.20030421 + CddMostSimilarToQuery@Base 6.1.20030421 + CddNew@Base 6.1.20030421 + CddOrgRefAsnRead@Base 6.1.20040204 + CddOrgRefAsnWrite@Base 6.1.20040204 + CddOrgRefFree@Base 6.1.20040204 + CddOrgRefNew@Base 6.1.20040204 + CddOrgRefSetAsnRead@Base 6.1.20040204 + CddOrgRefSetAsnWrite@Base 6.1.20040204 + CddOrgRefSetFree@Base 6.1.20040204 + CddPosFreqInform@Base 6.1.20030421 + CddPrefNodeDescrAsnRead@Base 6.1.20040204 + CddPrefNodeDescrAsnWrite@Base 6.1.20040204 + CddPrefNodeDescrFree@Base 6.1.20040204 + CddPrefNodeDescrSetAsnRead@Base 6.1.20040204 + CddPrefNodeDescrSetAsnWrite@Base 6.1.20040204 + CddPrefNodeDescrSetFree@Base 6.1.20040204 + CddPrefNodesAsnRead@Base 6.1.20040204 + CddPrefNodesAsnWrite@Base 6.1.20040204 + CddPrefNodesFree@Base 6.1.20040204 + CddPrefNodesNew@Base 6.1.20040204 + CddProjectAsnRead@Base 6.1.20040505 + CddProjectAsnWrite@Base 6.1.20040505 + CddProjectFree@Base 6.1.20040505 + CddProjectNew@Base 6.1.20040505 + CddPssmIdFromAcc@Base 6.1.20030421 + CddPssmInform@Base 6.1.20030421 + CddReadDBGetBioseq@Base 6.1.20030421 + CddReadDBGetBioseqEx@Base 6.1.20031028 + CddReadFromFile@Base 6.1.20030421 + CddReadIdx@Base 6.1.20030421 + CddRegularizeFileName@Base 6.1.20030421 + CddReindexExpAlign@Base 6.1.20030421 + CddReindexMSLDenDiagMaster@Base 6.1.20030421 + CddReindexMSLDenSegMaster@Base 6.1.20030421 + CddReindexSeqAlign@Base 6.1.20030421 + CddRemoveConsensus@Base 6.1.20030421 + CddRepeatAsnRead@Base 6.1.20030421 + CddRepeatAsnWrite@Base 6.1.20030421 + CddRepeatFree@Base 6.1.20030421 + CddRepeatNew@Base 6.1.20030421 + CddRetrieveBioseqById@Base 6.1.20030421 + CddSameSip@Base 6.1.20030421 + CddScriptAsnRead@Base 6.1.20040505 + CddScriptAsnWrite@Base 6.1.20040505 + CddScriptFree@Base 6.1.20040505 + CddScriptNew@Base 6.1.20040505 + CddSeqAlignDup@Base 6.1.20030421 + CddSeqAnnotForSeqAlign@Base 6.1.20030421 + CddSeqIdDupPDBGI@Base 6.1.20030421 + CddSetAsnRead@Base 6.1.20030421 + CddSetAsnWrite@Base 6.1.20030421 + CddSetFree@Base 6.1.20030421 + CddSetUpSearchWithReadDb@Base 6.1.20030421 + CddSevError@Base 6.1.20030421 + CddShrinkBioseq@Base 6.1.20030421 + CddSimpleHtmlError@Base 6.1.20030421 + CddTransferAlignAnnot@Base 6.1.20030421 + CddTreeAsnRead@Base 6.1.20030421 + CddTreeAsnWrite@Base 6.1.20030421 + CddTreeFree@Base 6.1.20030421 + CddTreeNew@Base 6.1.20030421 + CddTreeReadFromFile@Base 6.1.20030421 + CddTreeSetAsnRead@Base 6.1.20030421 + CddTreeSetAsnWrite@Base 6.1.20030421 + CddTreeSetFree@Base 6.1.20030421 + CddTreeWriteToFile@Base 6.1.20030421 + CddTrimSeqAligns@Base 6.1.20030421 + CddTruncStringAtFirstPunct@Base 6.1.20030421 + CddViewerAsnRead@Base 6.1.20040505 + CddViewerAsnWrite@Base 6.1.20040505 + CddViewerFree@Base 6.1.20040505 + CddViewerNew@Base 6.1.20040505 + CddViewerRectAsnRead@Base 6.1.20040505 + CddViewerRectAsnWrite@Base 6.1.20040505 + CddViewerRectFree@Base 6.1.20040505 + CddViewerRectNew@Base 6.1.20040505 + CddWriteToFile@Base 6.1.20030421 + CddcopySearchItems@Base 6.1.20030421 + CddfindDenseDiagThreshSequences@Base 6.1.20030421 + CddfindThreshSequences@Base 6.1.20030421 + CddposAllocateMemory@Base 6.1.20030421 + CddposCheckWeights@Base 6.1.20030421 + CddposComputeExtents@Base 6.1.20030421 + CddposComputePseudoFreqs@Base 6.1.20030421 + CddposComputeSequenceWeights@Base 6.1.20030421 + CddposDemographics@Base 6.1.20030421 + CddposDenseDiagDemographics@Base 6.1.20030421 + CddposFreeMemory2@Base 6.1.20030421 + CddposFreeMemory@Base 6.1.20030421 + CddposFreqsToMatrix@Base 6.1.20030421 + CddposInitializeInformation@Base 6.1.20030421 + CddposProcessAlignment@Base 6.1.20030421 + CddposPurgeMatches@Base 6.1.20030421 + CddposScaling@Base 6.1.20030421 + CddposTakeCheckpoint@Base 6.1.20030421 + ChangeMMDBAPIbExtent@Base 6.1.20030421 + ChemGraphAlignmentAsnRead@Base 6.1.20030421 + ChemGraphAlignmentAsnWrite@Base 6.1.20030421 + ChemGraphAlignmentFree@Base 6.1.20030421 + ChemGraphAlignmentNew@Base 6.1.20030421 + ChemGraphInteractionAsnRead@Base 6.1.20110713 + ChemGraphInteractionAsnWrite@Base 6.1.20110713 + ChemGraphInteractionFree@Base 6.1.20110713 + ChemGraphInteractionNew@Base 6.1.20110713 + ChemGraphPntrsAsnRead@Base 6.1.20030421 + ChemGraphPntrsAsnWrite@Base 6.1.20030421 + ChemGraphPntrsFree@Base 6.1.20030421 + ChiralCenterAsnRead@Base 6.1.20030421 + ChiralCenterAsnWrite@Base 6.1.20030421 + ChiralCenterFree@Base 6.1.20030421 + ChiralCenterNew@Base 6.1.20030421 + ClearPFBSelectList@Base 6.1.20030421 + ClearStructures@Base 6.1.20030421 + CloseMMDBAPI@Base 6.1.20030421 + Cn3dBackboneLabelStyleAsnRead@Base 6.1.20030421 + Cn3dBackboneLabelStyleAsnWrite@Base 6.1.20030421 + Cn3dBackboneLabelStyleFree@Base 6.1.20030421 + Cn3dBackboneLabelStyleNew@Base 6.1.20030421 + Cn3dBackboneStyleAsnRead@Base 6.1.20030421 + Cn3dBackboneStyleAsnWrite@Base 6.1.20030421 + Cn3dBackboneStyleFree@Base 6.1.20030421 + Cn3dBackboneStyleNew@Base 6.1.20030421 + Cn3dColorAsnRead@Base 6.1.20030421 + Cn3dColorAsnWrite@Base 6.1.20030421 + Cn3dColorFree@Base 6.1.20030421 + Cn3dColorNew@Base 6.1.20030421 + Cn3dGLMatrixAsnRead@Base 6.1.20030421 + Cn3dGLMatrixAsnWrite@Base 6.1.20030421 + Cn3dGLMatrixFree@Base 6.1.20030421 + Cn3dGLMatrixNew@Base 6.1.20030421 + Cn3dGeneralStyleAsnRead@Base 6.1.20030421 + Cn3dGeneralStyleAsnWrite@Base 6.1.20030421 + Cn3dGeneralStyleFree@Base 6.1.20030421 + Cn3dGeneralStyleNew@Base 6.1.20030421 + Cn3dMoleculeLocationAsnRead@Base 6.1.20030421 + Cn3dMoleculeLocationAsnWrite@Base 6.1.20030421 + Cn3dMoleculeLocationFree@Base 6.1.20030421 + Cn3dMoleculeLocationNew@Base 6.1.20030421 + Cn3dObjectLocationAsnRead@Base 6.1.20030421 + Cn3dObjectLocationAsnWrite@Base 6.1.20030421 + Cn3dObjectLocationFree@Base 6.1.20030421 + Cn3dObjectLocationNew@Base 6.1.20030421 + Cn3dResidueRangeAsnRead@Base 6.1.20030421 + Cn3dResidueRangeAsnWrite@Base 6.1.20030421 + Cn3dResidueRangeFree@Base 6.1.20030421 + Cn3dResidueRangeNew@Base 6.1.20030421 + Cn3dStyleDictionaryAsnRead@Base 6.1.20030421 + Cn3dStyleDictionaryAsnWrite@Base 6.1.20030421 + Cn3dStyleDictionaryFree@Base 6.1.20030421 + Cn3dStyleDictionaryNew@Base 6.1.20030421 + Cn3dStyleSettingsAsnRead@Base 6.1.20030421 + Cn3dStyleSettingsAsnWrite@Base 6.1.20030421 + Cn3dStyleSettingsFree@Base 6.1.20030421 + Cn3dStyleSettingsNew@Base 6.1.20030421 + Cn3dStyleSettingsSetAsnRead@Base 6.1.20030421 + Cn3dStyleSettingsSetAsnWrite@Base 6.1.20030421 + Cn3dStyleSettingsSetFree@Base 6.1.20030421 + Cn3dStyleTableItemAsnRead@Base 6.1.20030421 + Cn3dStyleTableItemAsnWrite@Base 6.1.20030421 + Cn3dStyleTableItemFree@Base 6.1.20030421 + Cn3dStyleTableItemNew@Base 6.1.20030421 + Cn3dUserAnnotationAsnRead@Base 6.1.20030421 + Cn3dUserAnnotationAsnWrite@Base 6.1.20030421 + Cn3dUserAnnotationFree@Base 6.1.20030421 + Cn3dUserAnnotationNew@Base 6.1.20030421 + Cn3dUserAnnotationsAsnRead@Base 6.1.20030421 + Cn3dUserAnnotationsAsnWrite@Base 6.1.20030421 + Cn3dUserAnnotationsFree@Base 6.1.20030421 + Cn3dUserAnnotationsNew@Base 6.1.20030421 + Cn3dVectorAsnRead@Base 6.1.20030421 + Cn3dVectorAsnWrite@Base 6.1.20030421 + Cn3dVectorFree@Base 6.1.20030421 + Cn3dVectorNew@Base 6.1.20030421 + Cn3dViewSettingsAsnRead@Base 6.1.20030421 + Cn3dViewSettingsAsnWrite@Base 6.1.20030421 + Cn3dViewSettingsFree@Base 6.1.20030421 + Cn3dViewSettingsNew@Base 6.1.20030421 + ColorNumKinAC@Base 6.1.20030421 + ColorNumKinBB@Base 6.1.20030421 + ColorNumKinSC@Base 6.1.20030421 + ColorPropAsnRead@Base 6.1.20030421 + ColorPropAsnWrite@Base 6.1.20030421 + ColorPropFree@Base 6.1.20030421 + ColorPropNew@Base 6.1.20030421 + CompareScores@Base 6.1.20030421 + ConeAsnRead@Base 6.1.20030421 + ConeAsnWrite@Base 6.1.20030421 + ConeFree@Base 6.1.20030421 + ConeNew@Base 6.1.20030421 + ConformationEnsembleAsnRead@Base 6.1.20030421 + ConformationEnsembleAsnWrite@Base 6.1.20030421 + ConformationEnsembleFree@Base 6.1.20030421 + ConformationEnsembleNew@Base 6.1.20030421 + CoordinatesAsnRead@Base 6.1.20030421 + CoordinatesAsnWrite@Base 6.1.20030421 + CoordinatesFree@Base 6.1.20030421 + CopyResult@Base 6.1.20030421 + CountModelstrucs@Base 6.1.20030421 + CylinderAsnRead@Base 6.1.20030421 + CylinderAsnWrite@Base 6.1.20030421 + CylinderFree@Base 6.1.20030421 + CylinderNew@Base 6.1.20030421 + DNFromPFB@Base 6.1.20030421 + DVNodeListAppend@Base 6.1.20030421 + DVNodeListLen@Base 6.1.20030421 + DValNodeAdd@Base 6.1.20030421 + DValNodeAddBoolean@Base 6.1.20030421 + DValNodeAddFloat@Base 6.1.20030421 + DValNodeAddFunction@Base 6.1.20030421 + DValNodeAddInt@Base 6.1.20030421 + DValNodeAddPointer@Base 6.1.20030421 + DValNodeAddStr@Base 6.1.20030421 + DValNodeCopyStr@Base 6.1.20030421 + DValNodeExtract@Base 6.1.20030421 + DValNodeExtractList@Base 6.1.20030421 + DValNodeFindNext@Base 6.1.20030421 + DValNodeFree@Base 6.1.20030421 + DValNodeFreeData@Base 6.1.20030421 + DValNodeHeadLink@Base 6.1.20030421 + DValNodeInsert@Base 6.1.20030421 + DValNodeLink@Base 6.1.20030421 + DValNodeListCat@Base 6.1.20030421 + DValNodeListCut@Base 6.1.20030421 + DValNodeListDelNode@Base 6.1.20030421 + DValNodeListInsert@Base 6.1.20030421 + DValNodeNew@Base 6.1.20030421 + DValNodeRead@Base 6.1.20030421 + DValNodeUnlink@Base 6.1.20030421 + DValNodeWrite@Base 6.1.20030421 + DensityCoordinatesAsnRead@Base 6.1.20030421 + DensityCoordinatesAsnWrite@Base 6.1.20030421 + DensityCoordinatesFree@Base 6.1.20030421 + DensityCoordinatesNew@Base 6.1.20030421 + DoApplyTransform@Base 6.1.20030421 + DoReverseTransform@Base 6.1.20030421 + DoesFeatureTypeHaveFuncs@Base 6.1.20030421 + DomainParentAsnRead@Base 6.1.20031028 + DomainParentAsnWrite@Base 6.1.20031028 + DomainParentFree@Base 6.1.20031028 + DomainParentNew@Base 6.1.20031028 + ElementKinColors@Base 6.1.20030421 + ElementName@Base 6.1.20030421 + ElementSize@Base 6.1.20030421 + EntrezGeneralAsnRead@Base 6.1.20030421 + EntrezGeneralAsnWrite@Base 6.1.20030421 + EntrezGeneralFree@Base 6.1.20030421 + EntrezGeneralNew@Base 6.1.20030421 + FHConvtFree@Base 6.1.20030421 + FHConvtMatrix@Base 6.1.20030421 + FHMatrix@Base 6.1.20030421 + FHMatrixFree@Base 6.1.20030421 + FHVector@Base 6.1.20030421 + FHVectorFree@Base 6.1.20030421 + FL3Matrix@Base 6.1.20030421 + FL3MatrixFree@Base 6.1.20030421 + FLConvtFree@Base 6.1.20030421 + FLConvtMatrix@Base 6.1.20030421 + FLMatrix@Base 6.1.20030421 + FLMatrixFree@Base 6.1.20030421 + FLSubmatrix@Base 6.1.20030421 + FLSubmatrixFree@Base 6.1.20030421 + FLVector@Base 6.1.20030421 + FLVectorFree@Base 6.1.20030421 + FeatureEvidenceAsnRead@Base 6.1.20030421 + FeatureEvidenceAsnWrite@Base 6.1.20030421 + FeatureEvidenceFree@Base 6.1.20030421 + FetchBS@Base 6.1.20030421 + FetchBiostrucPDB@Base 6.1.20030421 + FillSurface@Base 6.1.20030421 + FindLoadedBiostruc@Base 6.1.20030421 + FindMolByChar@Base 6.1.20030421 + FreeALD@Base 6.1.20030421 + FreeAModelstruc@Base 6.1.20030421 + FreeAtomicModelAsnLists@Base 6.1.20030421 + FreeCorDef@Base 6.1.20030421 + FreeDNMG@Base 6.1.20030421 + FreeDNMM@Base 6.1.20030421 + FreeDNMS@Base 6.1.20030421 + FreeDNTRN@Base 6.1.20030421 + FreeFldMtf@Base 6.1.20030421 + FreeGibScd@Base 6.1.20030421 + FreeKeptFeature@Base 6.1.20030421 + FreeListDNMG@Base 6.1.20030421 + FreeListDNML@Base 6.1.20030421 + FreeListDNMM@Base 6.1.20030421 + FreeListDNMS@Base 6.1.20030421 + FreeListDNSF@Base 6.1.20030421 + FreeListDNSFS@Base 6.1.20030421 + FreeListVNAL@Base 6.1.20030421 + FreeListVNMA@Base 6.1.20030421 + FreeListVNMB@Base 6.1.20030421 + FreeListVNMD@Base 6.1.20030421 + FreeListVNMO@Base 6.1.20030421 + FreeListVNSFF@Base 6.1.20030421 + FreeMAD@Base 6.1.20030421 + FreeMBD@Base 6.1.20030421 + FreeMDD@Base 6.1.20030421 + FreeMGD@Base 6.1.20030421 + FreeMLD@Base 6.1.20030421 + FreeMMD@Base 6.1.20030421 + FreeMOD@Base 6.1.20030421 + FreeMSD@Base 6.1.20030421 + FreeQrySeq@Base 6.1.20030421 + FreeRcxPtl@Base 6.1.20030421 + FreeRedundantAsn@Base 6.1.20030421 + FreeSFD@Base 6.1.20030421 + FreeSFF@Base 6.1.20030421 + FreeSFS@Base 6.1.20030421 + FreeSeqMtf@Base 6.1.20030421 + FreeSingleModel@Base 6.1.20030421 + FreeSurfaceModelAsnList@Base 6.1.20030421 + FreeThdTbl@Base 6.1.20030421 + FreeVNDataFn@Base 6.1.20030421 + GLMatrixAsnRead@Base 6.1.20030421 + GLMatrixAsnWrite@Base 6.1.20030421 + GLMatrixFree@Base 6.1.20030421 + GLMatrixNew@Base 6.1.20030421 + GetActiveModel@Base 6.1.20030421 + GetAlignmentSize@Base 6.1.20030421 + GetAtomLocs@Base 6.1.20030421 + GetFirstGraph@Base 6.1.20030421 + GetFirstModelstruc@Base 6.1.20030421 + GetKinMolName@Base 6.1.20030421 + GetLastGraph@Base 6.1.20030421 + GetLocation@Base 6.1.20030421 + GetMGFromMM@Base 6.1.20030421 + GetMMDBAPIbExtent@Base 6.1.20030421 + GetMMFromMSDBySeqId@Base 6.1.20030421 + GetMainAtom@Base 6.1.20030421 + GetMasterModelstruc@Base 6.1.20030421 + GetNextGraph@Base 6.1.20030421 + GetNextModelstruc@Base 6.1.20030421 + GetNumberOfDomains@Base 6.1.20030421 + GetNumberOfSubsets@Base 6.1.20030421 + GetPDNMSMain@Base 6.1.20030421 + GetPRGDDictionary@Base 6.1.20030421 + GetParentGraph@Base 6.1.20030421 + GetParentMol@Base 6.1.20030421 + GetPrevGraph@Base 6.1.20030421 + GetPreviousModelstruc@Base 6.1.20030421 + GetSelectedModelstruc@Base 6.1.20030421 + GetSlaveModelstruc@Base 6.1.20030421 + GetStrucStrings@Base 6.1.20030421 + GetSubsetName@Base 6.1.20030421 + GetSubsetNum@Base 6.1.20030421 + GlobalIdAsnRead@Base 6.1.20030421 + GlobalIdAsnWrite@Base 6.1.20030421 + GlobalIdFree@Base 6.1.20030421 + GlobalIdNew@Base 6.1.20030421 + GraphFromMMDBIndex@Base 6.1.20030421 + I2ConvtFree@Base 6.1.20030421 + I2ConvtMatrix@Base 6.1.20030421 + I2Matrix@Base 6.1.20030421 + I2MatrixFree@Base 6.1.20030421 + I2Vector@Base 6.1.20030421 + I2VectorFree@Base 6.1.20030421 + I4ConvtFree@Base 6.1.20030421 + I4ConvtMatrix@Base 6.1.20030421 + I4Matrix@Base 6.1.20030421 + I4MatrixFree@Base 6.1.20030421 + I4Vector@Base 6.1.20030421 + I4VectorFree@Base 6.1.20030421 + IndexFromNode@Base 6.1.20030421 + InstBSAnnotSet@Base 6.1.20030421 + InstallAlignedSlave@Base 6.1.20030421 + InstallStrucFeature@Base 6.1.20030421 + InterResidueBondAsnRead@Base 6.1.20030421 + InterResidueBondAsnWrite@Base 6.1.20030421 + InterResidueBondFree@Base 6.1.20030421 + InterResidueBondNew@Base 6.1.20030421 + IntraResidueBondAsnRead@Base 6.1.20030421 + IntraResidueBondAsnWrite@Base 6.1.20030421 + IntraResidueBondFree@Base 6.1.20030421 + IntraResidueBondNew@Base 6.1.20030421 + InvertCddExpAlign@Base 6.1.20030421 + IsMMDBAPIOpen@Base 6.1.20030421 + IsotropicTemperatureFactorsAsnRead@Base 6.1.20030421 + IsotropicTemperatureFactorsAsnWrite@Base 6.1.20030421 + IsotropicTemperatureFactorsFree@Base 6.1.20030421 + IsotropicTemperatureFactorsNew@Base 6.1.20030421 + KinAAColor@Base 6.1.20030421 + KinAtoms@Base 6.1.20030421 + KinColorFromSS@Base 6.1.20030421 + KinNAColor@Base 6.1.20030421 + KineColors@Base 6.1.20030421 + LinkAlpha@Base 6.1.20030421 + LoadDict@Base 6.1.20030421 + LoadSubsetTable@Base 6.1.20030421 + MMDBBiostrucGet@Base 6.1.20030421 + MMDBEvalPDB@Base 6.1.20030421 + MMDBFini@Base 6.1.20030421 + MMDBInit@Base 6.1.20030421 + MMDB_configuration@Base 6.1.20030421 + MakeAModelstruc@Base 6.1.20030421 + MakeChemGraphNodeList@Base 6.1.20030421 + MakeHashChange@Base 6.1.20030421 + MakePDBSeqId2@Base 6.1.20030421 + MakeRegionNodeList@Base 6.1.20030421 + MatrixAsnRead@Base 6.1.20030421 + MatrixAsnWrite@Base 6.1.20030421 + MatrixFree@Base 6.1.20030421 + MatrixNew@Base 6.1.20030421 + ModelCoordinateSetAsnRead@Base 6.1.20030421 + ModelCoordinateSetAsnWrite@Base 6.1.20030421 + ModelCoordinateSetFree@Base 6.1.20030421 + ModelCoordinateSetNew@Base 6.1.20030421 + ModelDescrAsnRead@Base 6.1.20030421 + ModelDescrAsnWrite@Base 6.1.20030421 + ModelDescrFree@Base 6.1.20030421 + ModelSpaceAsnRead@Base 6.1.20030421 + ModelSpaceAsnWrite@Base 6.1.20030421 + ModelSpaceFree@Base 6.1.20030421 + ModelSpaceNew@Base 6.1.20030421 + ModelSpacePointAsnRead@Base 6.1.20030421 + ModelSpacePointAsnWrite@Base 6.1.20030421 + ModelSpacePointFree@Base 6.1.20030421 + ModelSpacePointNew@Base 6.1.20030421 + ModelSpacePointsAsnRead@Base 6.1.20030421 + ModelSpacePointsAsnWrite@Base 6.1.20030421 + ModelSpacePointsFree@Base 6.1.20030421 + ModelSpacePointsNew@Base 6.1.20030421 + MolFromMMDBIndex@Base 6.1.20030421 + MolFromPDBChain@Base 6.1.20030421 + MoleculeGraphAsnRead@Base 6.1.20030421 + MoleculeGraphAsnWrite@Base 6.1.20030421 + MoleculeGraphFree@Base 6.1.20030421 + MoleculeGraphNew@Base 6.1.20030421 + MoleculePntrsAsnRead@Base 6.1.20030421 + MoleculePntrsAsnWrite@Base 6.1.20030421 + MoleculePntrsFree@Base 6.1.20030421 + MoleculePntrsNew@Base 6.1.20030421 + MoveAsnRead@Base 6.1.20030421 + MoveAsnWrite@Base 6.1.20030421 + MoveFree@Base 6.1.20030421 + NCBI4naLC@Base 6.1.20030421 + NCBI4naUC@Base 6.1.20030421 + NCBIstdaaLC@Base 6.1.20030421 + NCBIstdaaUC@Base 6.1.20030421 + NameFromSS@Base 6.1.20030421 + NcbiMimeAsn1AsnRead@Base 6.1.20030421 + NcbiMimeAsn1AsnWrite@Base 6.1.20030421 + NcbiMimeAsn1Free@Base 6.1.20030421 + NewALD@Base 6.1.20030421 + NewCorDef@Base 6.1.20030421 + NewDNMG@Base 6.1.20030421 + NewDNMM@Base 6.1.20030421 + NewDNMS@Base 6.1.20030421 + NewDNSFS@Base 6.1.20030421 + NewDNTRN@Base 6.1.20030421 + NewFldMtf@Base 6.1.20030421 + NewGibScd@Base 6.1.20030421 + NewMAD@Base 6.1.20030421 + NewMBD@Base 6.1.20030421 + NewMDD@Base 6.1.20030421 + NewMGD@Base 6.1.20030421 + NewMLD@Base 6.1.20030421 + NewMMD@Base 6.1.20030421 + NewMMDBAPI@Base 6.1.20030421 + NewMOD@Base 6.1.20030421 + NewMSD@Base 6.1.20030421 + NewQrySeq@Base 6.1.20030421 + NewRcxPtl@Base 6.1.20030421 + NewSFD@Base 6.1.20030421 + NewSFF@Base 6.1.20030421 + NewSFS@Base 6.1.20030421 + NewSeqMtf@Base 6.1.20030421 + NewThdTbl@Base 6.1.20030421 + NewVNAL@Base 6.1.20030421 + NewVNMA@Base 6.1.20030421 + NewVNMB@Base 6.1.20030421 + NewVNMD@Base 6.1.20030421 + NewVNMO@Base 6.1.20030421 + NewVNSFF@Base 6.1.20030421 + NodeAnnotationAsnRead@Base 6.1.20031028 + NodeAnnotationAsnWrite@Base 6.1.20031028 + NodeAnnotationFree@Base 6.1.20031028 + NodeAnnotationNew@Base 6.1.20031028 + OpenMMDBAPI@Base 6.1.20030421 + OrderThdTbl@Base 6.1.20030421 + OtherFeatureAsnRead@Base 6.1.20030421 + OtherFeatureAsnWrite@Base 6.1.20030421 + OtherFeatureFree@Base 6.1.20030421 + OtherFeatureNew@Base 6.1.20030421 + PDBConnect@Base 6.1.20030421 + PFBFromDN@Base 6.1.20030421 + PFBFromVN@Base 6.1.20030421 + PTRVector@Base 6.1.20030421 + PTRVectorFree@Base 6.1.20030421 + ParentGraphIUPAC1@Base 6.1.20030421 + ParentGraphNum@Base 6.1.20030421 + ParentGraphPDBName@Base 6.1.20030421 + ParentGraphPDBNo@Base 6.1.20030421 + ParentMolName@Base 6.1.20030421 + ParentMolNum@Base 6.1.20030421 + ParentStrucName@Base 6.1.20030421 + PrintCorDef@Base 6.1.20030421 + PrintFldMtf@Base 6.1.20030421 + PrintQrySeq@Base 6.1.20030421 + PrintSeqMtf@Base 6.1.20030421 + PrintThdTbl@Base 6.1.20030421 + PruneBiostruc@Base 6.1.20030421 + Rand01@Base 6.1.20030421 + RealValueAsnRead@Base 6.1.20030421 + RealValueAsnWrite@Base 6.1.20030421 + RealValueFree@Base 6.1.20030421 + RealValueNew@Base 6.1.20030421 + RebuildChemGraphAsn@Base 6.1.20030421 + ReferenceFrameAsnRead@Base 6.1.20030421 + ReferenceFrameAsnWrite@Base 6.1.20030421 + ReferenceFrameFree@Base 6.1.20030421 + ReferenceFrameNew@Base 6.1.20030421 + RefreshModelAsnMem@Base 6.1.20030421 + RefreshSurface@Base 6.1.20030421 + RegionBoundaryAsnRead@Base 6.1.20030421 + RegionBoundaryAsnWrite@Base 6.1.20030421 + RegionBoundaryFree@Base 6.1.20030421 + RegionCoordinatesAsnRead@Base 6.1.20030421 + RegionCoordinatesAsnWrite@Base 6.1.20030421 + RegionCoordinatesFree@Base 6.1.20030421 + RegionCoordinatesNew@Base 6.1.20030421 + RegionPntrsAsnRead@Base 6.1.20030421 + RegionPntrsAsnWrite@Base 6.1.20030421 + RegionPntrsFree@Base 6.1.20030421 + RegionPntrsNew@Base 6.1.20030421 + RegionSimilarityAsnRead@Base 6.1.20030421 + RegionSimilarityAsnWrite@Base 6.1.20030421 + RegionSimilarityFree@Base 6.1.20030421 + RegionSimilarityNew@Base 6.1.20030421 + RejectIdAsnRead@Base 6.1.20030421 + RejectIdAsnWrite@Base 6.1.20030421 + RejectIdFree@Base 6.1.20030421 + RejectIdNew@Base 6.1.20030421 + ResidueAsnRead@Base 6.1.20030421 + ResidueAsnWrite@Base 6.1.20030421 + ResidueExplicitPntrsAsnRead@Base 6.1.20030421 + ResidueExplicitPntrsAsnWrite@Base 6.1.20030421 + ResidueExplicitPntrsFree@Base 6.1.20030421 + ResidueExplicitPntrsNew@Base 6.1.20030421 + ResidueFree@Base 6.1.20030421 + ResidueGraphAsnRead@Base 6.1.20030421 + ResidueGraphAsnWrite@Base 6.1.20030421 + ResidueGraphFree@Base 6.1.20030421 + ResidueGraphNew@Base 6.1.20030421 + ResidueGraphPntrAsnRead@Base 6.1.20030421 + ResidueGraphPntrAsnWrite@Base 6.1.20030421 + ResidueGraphPntrFree@Base 6.1.20030421 + ResidueIntervalPntrAsnRead@Base 6.1.20030421 + ResidueIntervalPntrAsnWrite@Base 6.1.20030421 + ResidueIntervalPntrFree@Base 6.1.20030421 + ResidueIntervalPntrNew@Base 6.1.20030421 + ResidueNew@Base 6.1.20030421 + ResiduePntrsAsnRead@Base 6.1.20030421 + ResiduePntrsAsnWrite@Base 6.1.20030421 + ResiduePntrsFree@Base 6.1.20030421 + ResolveAlignChain@Base 6.1.20030421 + RotMatrixAsnRead@Base 6.1.20030421 + RotMatrixAsnWrite@Base 6.1.20030421 + RotMatrixFree@Base 6.1.20030421 + RotMatrixNew@Base 6.1.20030421 + ScaleThdTbl@Base 6.1.20030421 + SeqAlignConservation@Base 6.1.20031028 + SeqAlignHasConsensus@Base 6.1.20030421 + SeqAlignInform@Base 6.1.20030421 + SeqAlignReadFromFile@Base 6.1.20031028 + SeqAlignSetDup@Base 6.1.20030421 + SeqAlignToCddExpAlign@Base 6.1.20030421 + SeqAnnotReadFromFile@Base 6.1.20030421 + SeqHasTax@Base 6.1.20031028 + SeqStringFromMol@Base 6.1.20030421 + SeqTreeNodeAsnRead@Base 6.1.20031028 + SeqTreeNodeAsnWrite@Base 6.1.20031028 + SeqTreeNodeFree@Base 6.1.20031028 + SeqTreeNodeNew@Base 6.1.20031028 + SequenceTreeAsnRead@Base 6.1.20031028 + SequenceTreeAsnWrite@Base 6.1.20031028 + SequenceTreeFree@Base 6.1.20031028 + SequenceTreeNew@Base 6.1.20031028 + SetActiveModel@Base 6.1.20030421 + SetBackBone@Base 6.1.20030421 + SetBondOrder@Base 6.1.20030421 + SetHolderModelstruc@Base 6.1.20030421 + SetIons@Base 6.1.20030421 + SetMasterModelstruc@Base 6.1.20030421 + SetNeighborOff@Base 6.1.20030421 + SetNeighborOn@Base 6.1.20030421 + SetNodeFeatureData@Base 6.1.20030421 + SetSelectedModelstruc@Base 6.1.20030421 + SetSlaveModelstruc@Base 6.1.20030421 + SetVirtualBB@Base 6.1.20030421 + SipIsConsensus@Base 6.1.20030421 + SortOn@Base 6.1.20030421 + SphereAsnRead@Base 6.1.20030421 + SphereAsnWrite@Base 6.1.20030421 + SphereFree@Base 6.1.20030421 + SphereNew@Base 6.1.20030421 + StrucAsynchronousQuery@Base 6.1.20030421 + StrucCheckQueue@Base 6.1.20030421 + StrucOpenConnection@Base 6.1.20030421 + StrucReadReply@Base 6.1.20030421 + StrucSynchronousQuery@Base 6.1.20030421 + StrucWaitForReply@Base 6.1.20030421 + SurfaceCoordinatesAsnRead@Base 6.1.20030421 + SurfaceCoordinatesAsnWrite@Base 6.1.20030421 + SurfaceCoordinatesFree@Base 6.1.20030421 + SurfaceCoordinatesNew@Base 6.1.20030421 + SwapModelstruc@Base 6.1.20030421 + TMeshAsnRead@Base 6.1.20030421 + TMeshAsnWrite@Base 6.1.20030421 + TMeshFree@Base 6.1.20030421 + TMeshNew@Base 6.1.20030421 + TempsKine@Base 6.1.20030421 + ThermKine@Base 6.1.20030421 + ThrdRound@Base 6.1.20030421 + ToMSDParent@Base 6.1.20030421 + TransMatrixAsnRead@Base 6.1.20030421 + TransMatrixAsnWrite@Base 6.1.20030421 + TransMatrixFree@Base 6.1.20030421 + TransMatrixNew@Base 6.1.20030421 + TransformAsnRead@Base 6.1.20030421 + TransformAsnWrite@Base 6.1.20030421 + TransformFree@Base 6.1.20030421 + TransformNew@Base 6.1.20030421 + TransformToDNTRN@Base 6.1.20030421 + TraverseAll@Base 6.1.20030421 + TraverseAtoms@Base 6.1.20030421 + TraverseBonds@Base 6.1.20030421 + TraverseGraphs@Base 6.1.20030421 + TraverseIBonds@Base 6.1.20030421 + TraverseIntraBonds@Base 6.1.20030421 + TraverseModels@Base 6.1.20030421 + TraverseMolecules@Base 6.1.20030421 + TraverseOneModel@Base 6.1.20030421 + TraverseSolids@Base 6.1.20030421 + TriangleAsnRead@Base 6.1.20030421 + TriangleAsnWrite@Base 6.1.20030421 + TriangleFree@Base 6.1.20030421 + TriangleNew@Base 6.1.20030421 + TrianglesAsnRead@Base 6.1.20030421 + TrianglesAsnWrite@Base 6.1.20030421 + TrianglesFree@Base 6.1.20030421 + TrianglesNew@Base 6.1.20030421 + UCVector@Base 6.1.20030421 + UCVectorFree@Base 6.1.20030421 + UI4Vector@Base 6.1.20030421 + UI4VectorFree@Base 6.1.20030421 + UndoPFBSelectList@Base 6.1.20030421 + UpdateAlignAsnRead@Base 6.1.20030421 + UpdateAlignAsnWrite@Base 6.1.20030421 + UpdateAlignFree@Base 6.1.20030421 + UpdateAlignNew@Base 6.1.20030421 + UpdateCommentAsnRead@Base 6.1.20030421 + UpdateCommentAsnWrite@Base 6.1.20030421 + UpdateCommentFree@Base 6.1.20030421 + ValNodeListCat@Base 6.1.20030421 + VastTableSort@Base 6.1.20030421 + WriteASNChemGraphOnly@Base 6.1.20030421 + WriteAsnAllModel@Base 6.1.20030421 + WriteAsnLocalDict@Base 6.1.20030421 + WriteAsnModelList@Base 6.1.20030421 + WriteAsnOneModel@Base 6.1.20030421 + WriteAtomOrHet@Base 6.1.20030421 + WriteFASTAMolecule@Base 6.1.20030421 + WriteFASTASeqHet@Base 6.1.20030421 + WriteKinAAResType@Base 6.1.20030421 + WriteKinAllModel@Base 6.1.20030421 + WriteKinAlt@Base 6.1.20030421 + WriteKinAnimate@Base 6.1.20030421 + WriteKinAtom@Base 6.1.20030421 + WriteKinBB@Base 6.1.20030421 + WriteKinHeader@Base 6.1.20030421 + WriteKinHet@Base 6.1.20030421 + WriteKinIon@Base 6.1.20030421 + WriteKinModel@Base 6.1.20030421 + WriteKinModelByType@Base 6.1.20030421 + WriteKinModelList@Base 6.1.20030421 + WriteKinNAResType@Base 6.1.20030421 + WriteKinOneModel@Base 6.1.20030421 + WriteKinRes@Base 6.1.20030421 + WriteKinSeq@Base 6.1.20030421 + WriteKinVirt@Base 6.1.20030421 + WriteOutBiostruc@Base 6.1.20030421 + WritePDBAllModel@Base 6.1.20030421 + WritePDBConnect@Base 6.1.20030421 + WritePDBHeader@Base 6.1.20030421 + WritePDBModel@Base 6.1.20030421 + WritePDBModelList@Base 6.1.20030421 + WritePDBMotifs@Base 6.1.20030421 + WritePDBOneModel@Base 6.1.20030421 + WritePDBRemarks@Base 6.1.20030421 + WritePDBSeqRes@Base 6.1.20030421 + WriteStrucHTMLSeq@Base 6.1.20030421 + WriteStructSummary@Base 6.1.20030421 + algs@Base 6.1.20030421 + atd@Base 6.1.20030421 + bwfi@Base 6.1.20030421 + cpal@Base 6.1.20030421 + cpll@Base 6.1.20030421 + cprl@Base 6.1.20030421 + cxei@Base 6.1.20030421 + dgri@Base 6.1.20030421 + fnMMDBCn3Dmode@Base 6.1.20030421 + fnPBSFtoPSA@Base 6.1.20030421 + g0@Base 6.1.20030421 + g@Base 6.1.20030421 + isBiopoly@Base 6.1.20030421 + isHet@Base 6.1.20030421 + objcddAsnLoad@Base 6.1.20030421 + objcn3dAsnLoad@Base 6.1.20030421 + objmimeAsnLoad@Base 6.1.20030421 + objmmdb1AsnLoad@Base 6.1.20030421 + objmmdb2AsnLoad@Base 6.1.20030421 + objmmdb3AsnLoad@Base 6.1.20030421 + rsmp@Base 6.1.20030421 + sal0@Base 6.1.20030421 + salr@Base 6.1.20030421 + salu@Base 6.1.20030421 + sgoi@Base 6.1.20030421 + slo0@Base 6.1.20030421 + slor@Base 6.1.20030421 + slou@Base 6.1.20030421 + spci@Base 6.1.20030421 + spea@Base 6.1.20030421 + spel@Base 6.1.20030421 + spni@Base 6.1.20030421 + ttb0@Base 6.1.20030421 + ttbi@Base 6.1.20030421 + zsc@Base 6.1.20030421 +libncbiobj.so.6 libncbi6 #MINVER# + A2GBSeqLocReplaceID@Base 6.1.20040204 + AAForCodon@Base 6.1.20030421 + ACCN_1_5_FORMAT@Base 6.1.20030421 + ACCN_PIR_FORMAT@Base 6.1.20030421 + ACEFileFree@Base 6.1.20081116 + ACEFileNew@Base 6.1.20081116 + AECRActionAsnRead@Base 6.1.20080302 + AECRActionAsnWrite@Base 6.1.20080302 + AECRActionFree@Base 6.1.20080302 + AECRActionNew@Base 6.1.20080302 + AECRParseActionAsnRead@Base 6.1.20080302 + AECRParseActionAsnWrite@Base 6.1.20080302 + AECRParseActionFree@Base 6.1.20080302 + AECRParseActionNew@Base 6.1.20080302 + AECRSampleFree@Base 6.1.20081116 + AECRSampleListFree@Base 6.1.20081116 + ALI_ConvertToNCBIData@Base 6.1.20030421 + AMAlignDatFree@Base 6.1.20030421 + AMAlignDatNew@Base 6.1.20030421 + AMAlignIndex2Free2@Base 6.1.20030421 + AMAlignIndexFree@Base 6.1.20030421 + AMAlignIndexFreeEitherIndex@Base 6.1.20030421 + AMAlignIndexNew@Base 6.1.20030421 + AMFreeAllIndexes@Base 6.1.20030421 + AMFreqFree@Base 6.1.20030421 + AbbreviationList@Base 6.1.20080302 + AbstractReadFunction@Base 6.1.20040505 + AbstractReportError@Base 6.1.20040505 + AccessAsnLoad@Base 6.1.20030421 + AccnIsSWISSPROT@Base 6.1.20030421 + AccnIsUniProt@Base 6.1.20041020 + AccnListAsynchronousQuery@Base 6.1.20031028 + AccnListCheckQueue@Base 6.1.20031028 + AccnListOpenConnection@Base 6.1.20031028 + AccnListPreLoadSeqIdGiCache@Base 6.1.20050429 + AccnListReadReply@Base 6.1.20031028 + AccnListSynchronousQuery@Base 6.1.20031028 + AccnListWaitForReply@Base 6.1.20031028 + AccnRevHistAsynchronousQuery@Base 6.1.20030421 + AccnRevHistCheckQueue@Base 6.1.20030421 + AccnRevHistOpenConnection@Base 6.1.20030421 + AccnRevHistReadReply@Base 6.1.20030421 + AccnRevHistSynchronousQuery@Base 6.1.20030421 + AccnRevHistWaitForReply@Base 6.1.20030421 + ActionChoiceAsnRead@Base 6.1.20080302 + ActionChoiceAsnWrite@Base 6.1.20080302 + ActionChoiceFree@Base 6.1.20080302 + AddAAsToByteStore@Base 6.1.20030421 + AddAccessionBlock@Base 6.1.20040204 + AddAccessionToRefGeneTrackUserObject@Base 6.1.20030421 + AddAccessionToTpaAssemblyUserObject@Base 6.1.20030421 + AddAffiliationToPub@Base 6.1.20030421 + AddAlignInfoToSeqAnnot@Base 6.1.20030421 + AddAlignInfoToSeqAnnotEx@Base 6.1.20030421 + AddAllCDSGeneProtFeaturesToChoiceList@Base 6.1.20080302 + AddAllCDSGeneProtFieldsToChoiceList@Base 6.1.20080302 + AddAllDbxrefsToBioseq@Base 6.1.20080302 + AddAllDescriptorsToChoiceList@Base 6.1.20090301 + AddAllFeatureFieldsToChoiceList@Base 6.1.20080302 + AddAllFeaturesToChoiceList@Base 6.1.20080302 + AddAllRNASubtypesToChoiceList@Base 6.1.20080302 + AddAminoAcidsToBioseq@Base 6.1.20030421 + AddAminoAcidsToLiteral@Base 6.1.20030421 + AddAntiCodonTotRNA@Base 6.1.20030421 + AddAuthorToPub@Base 6.1.20030421 + AddAutoDefUserObjectCallback@Base 6.1.20160908 + AddAutoDefUserObjectToSeqEntry@Base 6.1.20160908 + AddAutodefProductFlag@Base 6.1.20160908 + AddBasecountBlock@Base 6.1.20040204 + AddBasesToBioseq@Base 6.1.20030421 + AddBasesToByteStore@Base 6.1.20030421 + AddBasesToLiteral@Base 6.1.20030421 + AddBioProjectIDsToDBLinkUserObject@Base 6.1.20120620 + AddBioSampleIDsToDBLinkUserObject@Base 6.1.20090301 + AddBioSourceToGBQual@Base 6.1.20030421 + AddBiomolToEntry@Base 6.1.20030421 + AddBooleanAutodefField@Base 6.1.20160908 + AddCAGEBlock@Base 6.1.20100808 + AddCDSGapComment@Base 6.1.20080302 + AddCitSubToUpdatedSequence@Base 6.1.20120620 + AddCodeBreakToCdRegion@Base 6.1.20030421 + AddCommentBlock@Base 6.1.20040204 + AddCommentStringWithTildes@Base 6.1.20040204 + AddCommentToEntry@Base 6.1.20030421 + AddCommentToSub@Base 6.1.20030421 + AddCommentWithURLlinks@Base 6.1.20040204 + AddCompleteToEntry@Base 6.1.20030421 + AddCompleteness@Base 6.1.20030421 + AddContainedCodingRegionDiscrepancies@Base 6.1.20070822 + AddContigBlock@Base 6.1.20040204 + AddCreateDateToEntry@Base 6.1.20030421 + AddCuratorToRefGeneTrackUserObject@Base 6.1.20030421 + AddCuratorURLToRefGeneTrackUserObject@Base 6.1.20081116 + AddDatabaseNameToStructuredComment@Base 6.1.20100808 + AddDateBlock@Base 6.1.20040204 + AddDblinkBlock@Base 6.1.20090719 + AddDbsourceBlock@Base 6.1.20040204 + AddDeflineBlock@Base 6.1.20040204 + AddDeflineFeatureRequestListToAutoDefUserObject@Base 6.1.20160908 + AddDeltaSeqOnlyToSubmission@Base 6.1.20030421 + AddDeltaSeqToNucProtEntry@Base 6.1.20030421 + AddDescriptorListActionAsnRead@Base 6.1.20120620 + AddDescriptorListActionAsnWrite@Base 6.1.20120620 + AddDescriptorListActionFree@Base 6.1.20120620 + AddDescriptorListActionNew@Base 6.1.20120620 + AddDiscrepanciesForMissingOrNonUniqueGeneLocusTags@Base 6.1.20070822 + AddDiscrepanciesForMissingOrNonUniqueGeneLocusTagsEx@Base 6.1.20081116 + AddDiscrepanciesForNonGeneLocusTags@Base 6.1.20070822 + AddECNumberNoteDiscrepancies@Base 6.1.20070822 + AddEmptyBlocks@Base 6.1.20030421 + AddEmptySegments@Base 6.1.20030421 + AddExceptionsToShortIntrons@Base 6.1.20100808 + AddExtraAccessions@Base 6.1.20030421 + AddFakeGapToDeltaSeq@Base 6.1.20030421 + AddFeatFunc@Base 6.1.20030421 + AddFeatHeaderBlock@Base 6.1.20040204 + AddFeatStatsBlock@Base 6.1.20061015 + AddFeatureBlock@Base 6.1.20040204 + AddFeatureListType@Base 6.1.20160908 + AddFeatureToGbseq@Base 6.1.20040204 + AddFieldStringToDbLinkUserObject@Base 6.1.20120620 + AddFieldToUserObject@Base 6.1.20160908 + AddFileActionAsnRead@Base 6.1.20120620 + AddFileActionAsnWrite@Base 6.1.20120620 + AddFileActionFree@Base 6.1.20120620 + AddFileActionNew@Base 6.1.20120620 + AddGBQual@Base 6.1.20030421 + AddGBQualEx@Base 6.1.20030421 + AddGIBBmethodToEntry@Base 6.1.20030421 + AddGapToDeltaSeq@Base 6.1.20030421 + AddGapToSegmentedEntry@Base 6.1.20030421 + AddGenBankBlockToEntry@Base 6.1.20030421 + AddGenBankSetToSubmission@Base 6.1.20030421 + AddGeneratedToRefGeneTrackUserObject@Base 6.1.20080302 + AddGenomeBlock@Base 6.1.20040204 + AddGenomeToEntry@Base 6.1.20030421 + AddHIVRule@Base 6.1.20160908 + AddIDsToGenomeProjectsDBUserObject@Base 6.1.20060301 + AddImportFeaturesToChoiceList@Base 6.1.20080302 + AddIntListFieldToDBLinkUserObject@Base 6.1.20160908 + AddIntToSeqFeat@Base 6.1.20030421 + AddIntToSeqLoc@Base 6.1.20050429 + AddIntegerToNcbiCleanupUserObject@Base 6.1.20090719 + AddIntervalToFeature@Base 6.1.20030421 + AddIntervalToLocation@Base 6.1.20030421 + AddIntervalsToGbfeat@Base 6.1.20061015 + AddItemStructuredCommentUserObject@Base 6.1.20060507 + AddJoinedFeatureDiscrepancies@Base 6.1.20070822 + AddJsInterval@Base 6.1.20120620 + AddKeywordsBlock@Base 6.1.20040204 + AddLink@Base 6.1.20030421 + AddLinkLater@Base 6.1.20030421 + AddListOutputTags@Base 6.1.20120620 + AddListToOutputConfig@Base 6.1.20160908 + AddLiteralToDeltaSeq@Base 6.1.20030421 + AddLocusBlock@Base 6.1.20040204 + AddMiscFeatParseRule@Base 6.1.20160908 + AddMissingAndSuperfluousGeneDiscrepancies@Base 6.1.20070822 + AddModListToAutoDefUserObject@Base 6.1.20160908 + AddModifierLabel@Base 6.1.20080302 + AddModifierToEntry@Base 6.1.20030421 + AddModifsToGBQual@Base 6.1.20030421 + AddMrnaOrESTtoModelEvidence@Base 6.1.20030421 + AddMutSetToSubmission@Base 6.1.20030421 + AddNcbiAutofixUserObject@Base 6.1.20110713 + AddNewUniqueAnnotations@Base 6.1.20100808 + AddNewUniqueDescriptors@Base 6.1.20100808 + AddNonExtendableException@Base 6.1.20090719 + AddNucProtToSubmission@Base 6.1.20030421 + AddOffsetToAlignNode@Base 6.1.20030421 + AddOrgModToEntry@Base 6.1.20030421 + AddOrgRefModToGBQual@Base 6.1.20030421 + AddOrganismDescriptionModifiersToAutoDefUserObject@Base 6.1.20160908 + AddOrganismToEntry@Base 6.1.20030421 + AddOrganismToEntryEx@Base 6.1.20030421 + AddOrganismToEntryNew@Base 6.1.20030421 + AddOriginBlock@Base 6.1.20040204 + AddOverlappingCodingRegionDiscrepancies@Base 6.1.20070822 + AddOverlappingGeneDiscrepancies@Base 6.1.20070822 + AddOverlappingrRNADiscrepancies@Base 6.1.20110713 + AddPID@Base 6.1.20030421 + AddPhrapGraph@Base 6.1.20030421 + AddPhrapGraphToSeqLit@Base 6.1.20030421 + AddPhySetToSubmission@Base 6.1.20030421 + AddPntToSeqFeat@Base 6.1.20030421 + AddPntToSeqLoc@Base 6.1.20070822 + AddPointToFeature@Base 6.1.20030421 + AddPopSetToSubmission@Base 6.1.20030421 + AddPopsetDeflineWithClause@Base 6.1.20100808 + AddPopsetTitles@Base 6.1.20100808 + AddPrimaryBlock@Base 6.1.20040204 + AddProbeDBIDsToDBLinkUserObject@Base 6.1.20090719 + AddProteinQuals@Base 6.1.20030421 + AddProteinSequenceCopy@Base 6.1.20080302 + AddPubToEntry@Base 6.1.20030421 + AddPubsFromTitle@Base 6.1.20070822 + AddQualToImpFeature@Base 6.1.20030421 + AddQualifierToFeature@Base 6.1.20030421 + AddRNACDSOverlapDiscrepancies@Base 6.1.20070822 + AddReadQualScores@Base 6.1.20081116 + AddRefStatsBlock@Base 6.1.20061015 + AddReferenceBlock@Base 6.1.20040204 + AddReferenceToSegmentedEntry@Base 6.1.20030421 + AddSecondaryAccnToEntry@Base 6.1.20030421 + AddSegmentBlock@Base 6.1.20040204 + AddSegmentedSeqToNucProtEntry@Base 6.1.20030421 + AddSegmentedSeqToSubmission@Base 6.1.20030421 + AddSeqEntryToGlobalDiscrepReport@Base 6.1.20081116 + AddSeqEntryToSeqEntry@Base 6.1.20030421 + AddSeqFeatInterval@Base 6.1.20030421 + AddSeqFeatPoint@Base 6.1.20030421 + AddSeqId@Base 6.1.20030421 + AddSeqLocPoint@Base 6.1.20050429 + AddSeqOnlyToSubmission@Base 6.1.20030421 + AddSeqReadArchIDsToDBLinkUserObject@Base 6.1.20120620 + AddSeqReadArchiveIDsToDBLinkUserObject@Base 6.1.20100808 + AddSeqToNucProtEntry@Base 6.1.20030421 + AddSeqToSegmentedEntry@Base 6.1.20030421 + AddSequenceBlock@Base 6.1.20040204 + AddSiteNoteQual@Base 6.1.20030421 + AddSlashBlock@Base 6.1.20040204 + AddSourceFeatBlock@Base 6.1.20040204 + AddSourceOrganismBlock@Base 6.1.20160908 + AddSourceToRefGeneTrackUserObject@Base 6.1.20031028 + AddStatusToRefGeneTrackUserObject@Base 6.1.20030421 + AddStringListFieldToDBLinkUserObject@Base 6.1.20160908 + AddStringToNcbiCleanupUserObject@Base 6.1.20090719 + AddStringToUnverifiedUserObject@Base 6.1.20120620 + AddStringWithTildes@Base 6.1.20040204 + AddStructuredCommentKeywords@Base 6.1.20100808 + AddSubSourceToEntry@Base 6.1.20030421 + AddSuppressedFeatures@Base 6.1.20160908 + AddTLSBlock@Base 6.1.20160908 + AddTSABlock@Base 6.1.20120620 + AddTechToEntry@Base 6.1.20030421 + AddTextToTabTableColumn@Base 6.1.20100808 + AddTitleToEntry@Base 6.1.20030421 + AddToGeneOntologyUserObject@Base 6.1.20030421 + AddToOutputConfig@Base 6.1.20160908 + AddToolToSub@Base 6.1.20030421 + AddTraceAssemblyIDsToDBLinkUserObject@Base 6.1.20090301 + AddTypeToSub@Base 6.1.20030421 + AddUniqueUpdateSequenceIDs@Base 6.1.20120620 + AddUnverifiedUserObject@Base 6.1.20110713 + AddUnverifiedUserObjectToBioseq@Base 6.1.20110713 + AddUnverifiedUserObjectToBioseqParent@Base 6.1.20120620 + AddValNodeString@Base 6.1.20040204 + AddVersionBlock@Base 6.1.20040204 + AddWGSBlock@Base 6.1.20040204 + Add_trid@Base 6.1.20030421 + AddmRNAForCDS@Base 6.1.20090719 + AdjustCDSLocationsForUnknownGapsCallback@Base 6.1.20080302 + AdjustFeatForGapFree@Base 6.1.20080302 + AdjustFeatureForGapChange@Base 6.1.20060301 + AdjustFeatureForGapsCallback@Base 6.1.20080302 + AdjustFeaturesForGapsActionAsnRead@Base 6.1.20160908 + AdjustFeaturesForGapsActionAsnWrite@Base 6.1.20160908 + AdjustFeaturesForGapsActionFree@Base 6.1.20160908 + AdjustFeaturesForGapsActionNew@Base 6.1.20160908 + AdjustFeaturesForInsertion@Base 6.1.20050429 + AdjustFrame@Base 6.1.20080302 + AdjustInfluenzaSourceTable@Base 6.1.20120620 + AdjustOffSetsInSeqAlign@Base 6.1.20030421 + AdjustSeqEntryForConsensusSplice@Base 6.1.20100808 + AdjustSeqEntryForConsensusSpliceEx@Base 6.1.20100808 + AdjustmRNAProductToMatchProteinProduct@Base 6.1.20080302 + AdvancedSeqEntryCleanup@Base 6.1.20160908 + AdvcLockFarComponents@Base 6.1.20070822 + AffilAsnRead@Base 6.1.20030421 + AffilAsnWrite@Base 6.1.20030421 + AffilFree@Base 6.1.20030421 + AffilMatch@Base 6.1.20050605 + AffilNew@Base 6.1.20030421 + AffiliationShortWordList@Base 6.1.20090719 + AfterAlsoSelect@Base 6.1.20030421 + AjpToByteStore@Base 6.1.20030421 + AjpToStrArray@Base 6.1.20030421 + Ali_AddError@Base 6.1.20030421 + Ali_ChangeRowToOther@Base 6.1.20030421 + Ali_Free@Base 6.1.20030421 + Ali_GetConfig@Base 6.1.20030421 + Ali_Read@Base 6.1.20030421 + Ali_ReadLines@Base 6.1.20030421 + Ali_SeqLineGetType@Base 6.1.20030421 + Ali_SetConfig@Base 6.1.20030421 + AlignBoxAsnRead@Base 6.1.20030421 + AlignBoxAsnWrite@Base 6.1.20030421 + AlignBoxFree@Base 6.1.20030421 + AlignBoxNew@Base 6.1.20030421 + AlignColumnsAsnRead@Base 6.1.20030421 + AlignColumnsAsnWrite@Base 6.1.20030421 + AlignColumnsFree@Base 6.1.20030421 + AlignColumnsNew@Base 6.1.20030421 + AlignCoordToSeqCoord2@Base 6.1.20030421 + AlignCoordToSeqCoord@Base 6.1.20030421 + AlignDefAsnRead@Base 6.1.20030421 + AlignDefAsnWrite@Base 6.1.20030421 + AlignDefFree@Base 6.1.20030421 + AlignDefNew@Base 6.1.20030421 + AlignForSequenceUpdate@Base 6.1.20120620 + AlignIdAsnRead@Base 6.1.20030421 + AlignIdAsnWrite@Base 6.1.20030421 + AlignIdFree@Base 6.1.20030421 + AlignLocAsnRead@Base 6.1.20030421 + AlignLocAsnWrite@Base 6.1.20030421 + AlignLocFree@Base 6.1.20030421 + AlignLocNew@Base 6.1.20030421 + AlignLocSetAsnRead@Base 6.1.20030421 + AlignLocSetAsnWrite@Base 6.1.20030421 + AlignLocSetFree@Base 6.1.20030421 + AlignMgr2GetFirstNForStdSeg@Base 6.1.20030421 + AlignNodeFind@Base 6.1.20030421 + AlignNodeIndex@Base 6.1.20030421 + AlignRowsAsnRead@Base 6.1.20030421 + AlignRowsAsnWrite@Base 6.1.20030421 + AlignRowsFree@Base 6.1.20030421 + AlignRowsNew@Base 6.1.20030421 + AlignabilityByLoc@Base 6.1.20030421 + AlignmentFileFree@Base 6.1.20040204 + AlignmentFileFromContig@Base 6.1.20081116 + AlignmentFileNew@Base 6.1.20040204 + AlignmentIntervalToString@Base 6.1.20081116 + AlignmentPercentIdentity@Base 6.1.20070822 + AlignmentStringToSequenceString@Base 6.1.20050429 + AllAsnLoad@Base 6.1.20030421 + AllObjLoad@Base 6.1.20030421 + AllowFieldMulti@Base 6.1.20081116 + AllowSourceQualMulti@Base 6.1.20081116 + AlnMgr2AnchorSeqAlign@Base 6.1.20030421 + AlnMgr2ComputeFreqMatrix@Base 6.1.20030421 + AlnMgr2ComputeScoreForSeqAlign@Base 6.1.20030421 + AlnMgr2DumpIndexedAlnToFile@Base 6.1.20030421 + AlnMgr2DupAlnAndIndexes@Base 6.1.20030421 + AlnMgr2ExtendToCoords@Base 6.1.20030421 + AlnMgr2ExtractPairwiseSeqAlign@Base 6.1.20030421 + AlnMgr2FillInUnaligned@Base 6.1.20030421 + AlnMgr2FindAnchor@Base 6.1.20030421 + AlnMgr2FreeInterruptInfo@Base 6.1.20030421 + AlnMgr2FuseSet@Base 6.1.20030421 + AlnMgr2GetAlnLength@Base 6.1.20030421 + AlnMgr2GetAlnLengthStdSeg@Base 6.1.20030421 + AlnMgr2GetFirstNForSip@Base 6.1.20030421 + AlnMgr2GetFirstNForSipList@Base 6.1.20031028 + AlnMgr2GetInterruptInfo@Base 6.1.20030421 + AlnMgr2GetMaxTailLength@Base 6.1.20030421 + AlnMgr2GetNextAlnBit@Base 6.1.20030421 + AlnMgr2GetNextLengthBit@Base 6.1.20030421 + AlnMgr2GetNthBlockRange@Base 6.1.20030421 + AlnMgr2GetNthRowSpanInSA@Base 6.1.20030421 + AlnMgr2GetNthRowTail@Base 6.1.20030421 + AlnMgr2GetNthSegmentRange@Base 6.1.20030421 + AlnMgr2GetNthSeqIdPtr@Base 6.1.20030421 + AlnMgr2GetNthSeqIdPtrStdSeg@Base 6.1.20030421 + AlnMgr2GetNthSeqRangeInSA@Base 6.1.20030421 + AlnMgr2GetNthSeqRangeInSAStdSeg@Base 6.1.20030421 + AlnMgr2GetNthStdSeg@Base 6.1.20031028 + AlnMgr2GetNthStrand@Base 6.1.20030421 + AlnMgr2GetNthUnalignedForNthRow@Base 6.1.20030421 + AlnMgr2GetNumAlnBlocks@Base 6.1.20030421 + AlnMgr2GetNumRows@Base 6.1.20030421 + AlnMgr2GetNumSegs@Base 6.1.20030421 + AlnMgr2GetNumSegsInRange@Base 6.1.20030421 + AlnMgr2GetNumStdSegs@Base 6.1.20031028 + AlnMgr2GetParent@Base 6.1.20030421 + AlnMgr2GetSeqRangeForSipInSAStdSeg@Base 6.1.20031028 + AlnMgr2GetSeqRangeForSipInStdSeg@Base 6.1.20031028 + AlnMgr2GetSubAlign@Base 6.1.20030421 + AlnMgr2IndexAsRows@Base 6.1.20030421 + AlnMgr2IndexIndexedChain@Base 6.1.20030421 + AlnMgr2IndexLite@Base 6.1.20030421 + AlnMgr2IndexSeqAlign@Base 6.1.20030421 + AlnMgr2IndexSeqAlignEx@Base 6.1.20030421 + AlnMgr2IndexSingleChildSeqAlign@Base 6.1.20030421 + AlnMgr2IsItProtein@Base 6.1.20030421 + AlnMgr2IsSAPDiscAli@Base 6.1.20030421 + AlnMgr2MapBioseqToSeqAlign@Base 6.1.20030421 + AlnMgr2MapBioseqToSeqAlignStdSeg@Base 6.1.20030421 + AlnMgr2MapRowToRow@Base 6.1.20030421 + AlnMgr2MapSeqAlignToBioseq@Base 6.1.20030421 + AlnMgr2MapSeqAlignToBioseqStdSeg@Base 6.1.20030421 + AlnMgr2MergeTwoAlignments@Base 6.1.20030421 + AlnMgr2PadConservatively@Base 6.1.20030421 + AlnMgr2PrintSeqAlign@Base 6.1.20030421 + AlnMgr2ReIndexSeqAlign@Base 6.1.20030421 + AlnMgr2RemoveInconsistentAlnsFromSet@Base 6.1.20030421 + AlnMgr2SortAlnSetByNthRowPos@Base 6.1.20030421 + AlnMgr2TruncateSeqAlign@Base 6.1.20030421 + AlnMgrAddBlock@Base 6.1.20030421 + AlnMgrAnythingToSeg@Base 6.1.20030421 + AlnMgrCheckAlignForParent@Base 6.1.20030421 + AlnMgrCheckOrdered@Base 6.1.20030421 + AlnMgrCheckOverlapping@Base 6.1.20030421 + AlnMgrCheckRealMaster@Base 6.1.20030421 + AlnMgrCompareAMS@Base 6.1.20030421 + AlnMgrCompareIncreasingBySeqIdPtr@Base 6.1.20030421 + AlnMgrCompareMasterAMS@Base 6.1.20030421 + AlnMgrCompareTips@Base 6.1.20030421 + AlnMgrCopyAndIndexSingleAlignment@Base 6.1.20030421 + AlnMgrCopyIndexedParentIntoSap@Base 6.1.20030421 + AlnMgrCopyIndexedParentSeqAlign@Base 6.1.20030421 + AlnMgrCopyIndexesForChildSeqAlign@Base 6.1.20030421 + AlnMgrCopyRowSource@Base 6.1.20030421 + AlnMgrCopySASeqDat@Base 6.1.20030421 + AlnMgrCopyamadp@Base 6.1.20030421 + AlnMgrDeleteChildByPointer@Base 6.1.20030421 + AlnMgrDeleteHidden@Base 6.1.20030421 + AlnMgrDeleteHiddenEx@Base 6.1.20030421 + AlnMgrDeleteNthRow@Base 6.1.20030421 + AlnMgrDupTopNByScore@Base 6.1.20030421 + AlnMgrFillInStarts@Base 6.1.20030421 + AlnMgrFindFirst@Base 6.1.20030421 + AlnMgrFindMaster@Base 6.1.20030421 + AlnMgrForceMasterSlave@Base 6.1.20030421 + AlnMgrGetAllNForSip@Base 6.1.20030421 + AlnMgrGetAlnLength@Base 6.1.20030421 + AlnMgrGetMasterGapStartForSeg@Base 6.1.20030421 + AlnMgrGetMaxRowsForParentPartial@Base 6.1.20030421 + AlnMgrGetMaxSegments@Base 6.1.20030421 + AlnMgrGetMaxTailLength@Base 6.1.20030421 + AlnMgrGetMaxUnalignedLength@Base 6.1.20030421 + AlnMgrGetNForSap@Base 6.1.20030421 + AlnMgrGetNForSip@Base 6.1.20030421 + AlnMgrGetNextAlnBit@Base 6.1.20030421 + AlnMgrGetNextLengthBit@Base 6.1.20030421 + AlnMgrGetNextNthSeqRange@Base 6.1.20030421 + AlnMgrGetNthAlignedSegInNthRow@Base 6.1.20030421 + AlnMgrGetNthBlockRange@Base 6.1.20030421 + AlnMgrGetNthRowTail@Base 6.1.20030421 + AlnMgrGetNthSegmentRange@Base 6.1.20030421 + AlnMgrGetNthSeqIdPtr@Base 6.1.20030421 + AlnMgrGetNthSeqRangeInSA@Base 6.1.20030421 + AlnMgrGetNthStrand@Base 6.1.20030421 + AlnMgrGetNthUnalignedForNthRow@Base 6.1.20030421 + AlnMgrGetNumAlnBlocks@Base 6.1.20030421 + AlnMgrGetNumRows@Base 6.1.20030421 + AlnMgrGetNumSegments@Base 6.1.20030421 + AlnMgrGetNumSeqs@Base 6.1.20030421 + AlnMgrGetParent@Base 6.1.20030421 + AlnMgrGetRowsForMasterSlave@Base 6.1.20030421 + AlnMgrGetRowsForPartial@Base 6.1.20030421 + AlnMgrGetSapForSip@Base 6.1.20030421 + AlnMgrGetStartFromMaster@Base 6.1.20030421 + AlnMgrGetStrand@Base 6.1.20030421 + AlnMgrGetSubAlign@Base 6.1.20030421 + AlnMgrGetSubAlignSpecial@Base 6.1.20030421 + AlnMgrGetUniqueSeqs@Base 6.1.20030421 + AlnMgrIndexIndexedChain@Base 6.1.20030421 + AlnMgrIndexLinkedSegs@Base 6.1.20030421 + AlnMgrIndexLite@Base 6.1.20030421 + AlnMgrIndexParentSA@Base 6.1.20030421 + AlnMgrIndexSeqAlign@Base 6.1.20030421 + AlnMgrIndexSingleChildSeqAlign@Base 6.1.20030421 + AlnMgrIndexSingleSeqAlign@Base 6.1.20030421 + AlnMgrIsEditable@Base 6.1.20030421 + AlnMgrIsIBMable@Base 6.1.20030421 + AlnMgrIsSAPDiscAli@Base 6.1.20030421 + AlnMgrIsSAPNULL@Base 6.1.20030421 + AlnMgrMakeAlignCoords@Base 6.1.20030421 + AlnMgrMakeFakeMultiple@Base 6.1.20030421 + AlnMgrMakeMasterPlus@Base 6.1.20030421 + AlnMgrMakeMultByIntersectOnMaster@Base 6.1.20030421 + AlnMgrMakeMultSegments@Base 6.1.20030421 + AlnMgrMakeMultipleByScore@Base 6.1.20030421 + AlnMgrMakeMultipleByScoreEx@Base 6.1.20030421 + AlnMgrMakeMultipleByScoreExEx@Base 6.1.20030421 + AlnMgrMakeRowsForOrdered@Base 6.1.20030421 + AlnMgrMakeSegmentedMasterSlave@Base 6.1.20030421 + AlnMgrMapBioseqToBioseq@Base 6.1.20030421 + AlnMgrMapBioseqToSeqAlign@Base 6.1.20030421 + AlnMgrMapBioseqToSeqAlignEx@Base 6.1.20030421 + AlnMgrMapRowCoords@Base 6.1.20030421 + AlnMgrMapToBsqCoords@Base 6.1.20030421 + AlnMgrMerge3OverlappingSeqAligns@Base 6.1.20030421 + AlnMgrMergeIntoMSMultByMaster@Base 6.1.20030421 + AlnMgrMergeSegments@Base 6.1.20030421 + AlnMgrNeatlyIndex@Base 6.1.20030421 + AlnMgrPropagateSeqIdsByRow@Base 6.1.20030421 + AlnMgrPropagateSeqIdsBySapList@Base 6.1.20030421 + AlnMgrPropagateUpSeqIdPtrs@Base 6.1.20030421 + AlnMgrReIndexSeqAlign@Base 6.1.20030421 + AlnMgrRearrangeUnpacked@Base 6.1.20030421 + AlnMgrReconcileGaps@Base 6.1.20030421 + AlnMgrRemoveInconsistentFromPairwiseSet@Base 6.1.20030421 + AlnMgrRemoveInconsistentFromPairwiseSetEx@Base 6.1.20030421 + AlnMgrReplaceBlock@Base 6.1.20030421 + AlnMgrSeqAlignToDDP@Base 6.1.20030421 + AlnMgrSetMaster@Base 6.1.20030421 + AlnMgrSortAlnSetByNthRowPos@Base 6.1.20030421 + AlnMgrSortSeqAligns@Base 6.1.20030421 + AlnMgrSortbyID@Base 6.1.20030421 + AlnMgrTossNeatRows@Base 6.1.20030421 + AlnMgrTruncateSAP@Base 6.1.20030421 + AlnMgrUnpackSeqAlign@Base 6.1.20030421 + AlnMsgFree2@Base 6.1.20030421 + AlnMsgFree@Base 6.1.20030421 + AlnMsgNew2@Base 6.1.20030421 + AlnMsgNew@Base 6.1.20030421 + AlnMsgReNew2@Base 6.1.20030421 + AlnMsgReNew@Base 6.1.20030421 + AltIndexedFastaLibFetchDisable@Base 6.1.20031028 + AltIndexedFastaLibFetchEnable@Base 6.1.20031028 + AltitudeIsValid@Base 6.1.20160908 + AnnotDescAsnRead@Base 6.1.20030421 + AnnotDescAsnWrite@Base 6.1.20030421 + AnnotDescFree@Base 6.1.20030421 + AnnotDescLabel@Base 6.1.20050429 + AnnotDescrAsnRead@Base 6.1.20030421 + AnnotDescrAsnWrite@Base 6.1.20030421 + AnnotDescrFree@Base 6.1.20030421 + AnnotIdAsnRead@Base 6.1.20030421 + AnnotIdAsnWrite@Base 6.1.20030421 + AnnotIdFree@Base 6.1.20030421 + AnnotIdSetAsnRead@Base 6.1.20030421 + AnnotIdSetAsnWrite@Base 6.1.20030421 + AnnotIdSetFree@Base 6.1.20030421 + AnyDiscrepanciesChosen@Base 6.1.20100808 + ApplyActionAsnRead@Base 6.1.20080302 + ApplyActionAsnWrite@Base 6.1.20080302 + ApplyActionFree@Base 6.1.20080302 + ApplyActionNew@Base 6.1.20080302 + ApplyBarcodeDbxrefsToBioseq@Base 6.1.20070822 + ApplyBarcodeKeywordToBioseq@Base 6.1.20090719 + ApplyBarcodeKeywords@Base 6.1.20070822 + ApplyBarcodeTech@Base 6.1.20090719 + ApplyCDSOptionsToFeature@Base 6.1.20081116 + ApplyFBOLDbxrefsToBioseq@Base 6.1.20120620 + ApplyFeatureActionAsnRead@Base 6.1.20080302 + ApplyFeatureActionAsnWrite@Base 6.1.20080302 + ApplyFeatureActionFree@Base 6.1.20080302 + ApplyFeatureActionNew@Base 6.1.20080302 + ApplyMacroToSeqEntry@Base 6.1.20080302 + ApplyMacroToSeqEntryEx@Base 6.1.20100808 + ApplyMacroToSeqEntryExEx@Base 6.1.20120620 + ApplyMolinfoBlockToSeqEntry@Base 6.1.20081116 + ApplyOneFeatureToBioseq@Base 6.1.20100808 + ApplyOneSpecificHostFix@Base 6.1.20070822 + ApplyProductUpdateTable@Base 6.1.20110713 + ApplySuspectProductNameFixToFeature@Base 6.1.20110713 + ApplySuspectProductNameFixToString@Base 6.1.20110713 + ApplySuspectRuleFixesToSeqEntry@Base 6.1.20110713 + ApplyTableActionAsnRead@Base 6.1.20120620 + ApplyTableActionAsnWrite@Base 6.1.20120620 + ApplyTableActionFree@Base 6.1.20120620 + ApplyTableActionNew@Base 6.1.20120620 + ApplyTableExtraDataAsnRead@Base 6.1.20120620 + ApplyTableExtraDataAsnWrite@Base 6.1.20120620 + ApplyTableExtraDataFree@Base 6.1.20120620 + ApplyTableToFeatures@Base 6.1.20080302 + ApplyTableValuesToObjectTable@Base 6.1.20080302 + ApplyTextTransformsToString@Base 6.1.20110713 + AreAECRActionFieldsEqual@Base 6.1.20081116 + AreAnyElementsOfSetInAnyAlignment@Base 6.1.20160908 + AreFeatureClausesUnique@Base 6.1.20080302 + AreSequenceResiduesIdentical@Base 6.1.20120620 + ArticleIdAsnRead@Base 6.1.20030421 + ArticleIdAsnWrite@Base 6.1.20030421 + ArticleIdFree@Base 6.1.20030421 + ArticleIdNew@Base 6.1.20030421 + Asn1BondTypeFromMacroBondType@Base 6.1.20081116 + Asn1SiteTypeFromMacroSiteType@Base 6.1.20081116 + Asn2ffJobCreate@Base 6.1.20030421 + Asn2gbAddBlock@Base 6.1.20040204 + Asn2gnbkCompressSpaces@Base 6.1.20040204 + AsnIndexedLibFetchDisable@Base 6.1.20041020 + AsnIndexedLibFetchEnable@Base 6.1.20041020 + AssemblyDateFromCollectionDate@Base 6.1.20160908 + AssignAtomLocId@Base 6.1.20030421 + AssignBackBone@Base 6.1.20030421 + AssignFeatureIDs@Base 6.1.20060507 + AssignFeatureIDsWithOffset@Base 6.1.20120620 + AssignGeneXrefToFeat@Base 6.1.20160908 + AssignIDsInEntity@Base 6.1.20030421 + AssignIDsInEntityEx@Base 6.1.20050429 + AssignIons@Base 6.1.20030421 + AssignVirtual@Base 6.1.20030421 + AttachDataForProc@Base 6.1.20030421 + AuthListAsnRead@Base 6.1.20030421 + AuthListAsnWrite@Base 6.1.20030421 + AuthListFree@Base 6.1.20030421 + AuthListMatch@Base 6.1.20030421 + AuthListNew@Base 6.1.20030421 + AuthorAsnRead@Base 6.1.20030421 + AuthorAsnWrite@Base 6.1.20030421 + AuthorFixActionAsnRead@Base 6.1.20110713 + AuthorFixActionAsnWrite@Base 6.1.20110713 + AuthorFixActionFree@Base 6.1.20110713 + AuthorFixActionNew@Base 6.1.20110713 + AuthorFree@Base 6.1.20030421 + AuthorMatch@Base 6.1.20050605 + AuthorNew@Base 6.1.20030421 + AutoConvertCDSToMiscFeat@Base 6.1.20090719 + AutoDefForSeqEntry@Base 6.1.20080302 + AutoDefForSeqEntryEx@Base 6.1.20160908 + AutoFixSpecialCharactersInEntity@Base 6.1.20110713 + AutoReplaceSpecialCharactersInTabTable@Base 6.1.20110713 + AutoReplaceSpecialCharactersInText@Base 6.1.20110713 + AutoReplaceSpecialCharactersWithMessage@Base 6.1.20110713 + AutoapplyStructuredCommentPrefix@Base 6.1.20120620 + AutodefActionAsnRead@Base 6.1.20090301 + AutodefActionAsnWrite@Base 6.1.20090301 + AutodefActionFree@Base 6.1.20090301 + AutodefActionNew@Base 6.1.20090301 + AutofixActionAsnRead@Base 6.1.20120620 + AutofixActionAsnWrite@Base 6.1.20120620 + AutofixActionFree@Base 6.1.20120620 + AutofixActionNew@Base 6.1.20120620 + AutofixDiscrepancies@Base 6.1.20090719 + Avl_Clear@Base 6.1.20030421 + Avl_Delete@Base 6.1.20030421 + Avl_Initialize@Base 6.1.20030421 + Avl_Insert@Base 6.1.20030421 + Avl_Search@Base 6.1.20030421 + Avl_SetUnique@Base 6.1.20030421 + Avl_TotalNodes@Base 6.1.20030421 + Avl_Traverse@Base 6.1.20030421 + BLASTGetBOByRID@Base 6.1.20030421 + BLASTGetBOByRIDEx@Base 6.1.20040204 + BLASTGetQueryBioseqByRID@Base 6.1.20030421 + BLASTGetQueryBioseqByRIDEx@Base 6.1.20030421 + BLASTGetQuerySummary@Base 6.1.20030421 + BLASTGetSeqAnnotByRID@Base 6.1.20030421 + BLASTGetSeqAnnotByRIDEx@Base 6.1.20030421 + BSCompressDNA@Base 6.1.20030421 + BSCompressDNANew@Base 6.1.20030421 + BSCompressDNAOld@Base 6.1.20030421 + BSConvertSeq@Base 6.1.20030421 + BSPack@Base 6.1.20030421 + BSRebuildDNA@Base 6.1.20030421 + BSRebuildDNA_4na@Base 6.1.20030421 + BarcodeTestBarcodeIdString@Base 6.1.20070822 + BarcodeTestConfigFree@Base 6.1.20070822 + BarcodeTestConfigNew@Base 6.1.20070822 + BarcodeTestGenbankIdString@Base 6.1.20070822 + BarcodeTestResultsCopy@Base 6.1.20070822 + BarcodeTestResultsExtractPass@Base 6.1.20110713 + BarcodeTestResultsFree@Base 6.1.20070822 + BarcodeTestResultsListFree@Base 6.1.20070822 + BarcodeTestResultsNew@Base 6.1.20070822 + BarcodeValidateOneSeqEntry@Base 6.1.20081116 + BaseSegFree@Base 6.1.20090301 + BaseSegNew@Base 6.1.20090301 + BasicSeqAnnotCleanup@Base 6.1.20100808 + BasicSeqEntryCleanup@Base 6.1.20030421 + BatchExtraFree@Base 6.1.20090301 + BatchExtraNew@Base 6.1.20090301 + BestSeqAlignStats@Base 6.1.20030421 + BiblioAsnLoad@Base 6.1.20030421 + BinomialOrgNameAsnRead@Base 6.1.20030421 + BinomialOrgNameAsnWrite@Base 6.1.20030421 + BinomialOrgNameFree@Base 6.1.20030421 + BinomialOrgNameNew@Base 6.1.20030421 + BioSourceAsnRead@Base 6.1.20030421 + BioSourceAsnWrite@Base 6.1.20030421 + BioSourceFree@Base 6.1.20030421 + BioSourceFromSourceQualVals@Base 6.1.20090301 + BioSourceHasOldOrgModQualifiers@Base 6.1.20070822 + BioSourceHasOldSubSourceQualifiers@Base 6.1.20070822 + BioSourceMatch@Base 6.1.20050605 + BioSourceNew@Base 6.1.20030421 + BiomolFromMoleculeType@Base 6.1.20080302 + BiomolNameFromBiomol@Base 6.1.20080302 + BioseqAsnRead@Base 6.1.20030421 + BioseqAsnWrite@Base 6.1.20030421 + BioseqAsnWriteAsTSeq@Base 6.1.20031028 + BioseqComplement@Base 6.1.20030421 + BioseqContextFree@Base 6.1.20030421 + BioseqContextGetSeqDescr@Base 6.1.20030421 + BioseqContextGetSeqFeat@Base 6.1.20030421 + BioseqContextGetTitle@Base 6.1.20030421 + BioseqContextNew@Base 6.1.20030421 + BioseqConvert@Base 6.1.20030421 + BioseqCopy@Base 6.1.20030421 + BioseqCopyEx@Base 6.1.20030421 + BioseqDelete@Base 6.1.20030421 + BioseqDeleteEx@Base 6.1.20100808 + BioseqFastaMemStream@Base 6.1.20041020 + BioseqFastaStream@Base 6.1.20040204 + BioseqFastaStreamEx@Base 6.1.20070822 + BioseqFetch@Base 6.1.20030421 + BioseqFetchDisable@Base 6.1.20030421 + BioseqFetchInit@Base 6.1.20030421 + BioseqFind@Base 6.1.20030421 + BioseqFindCore@Base 6.1.20030421 + BioseqFindEntity@Base 6.1.20030421 + BioseqFindFromSeqLoc@Base 6.1.20030421 + BioseqFindInSeqEntry@Base 6.1.20030421 + BioseqFindSpecial@Base 6.1.20070822 + BioseqFree@Base 6.1.20030421 + BioseqFreeComponents@Base 6.1.20030421 + BioseqFromAlignmentID@Base 6.1.20160908 + BioseqGetCode@Base 6.1.20030421 + BioseqGetGBDivCode@Base 6.1.20030421 + BioseqGetGaps@Base 6.1.20030421 + BioseqGetLen@Base 6.1.20030421 + BioseqGetNumbering@Base 6.1.20030421 + BioseqGetSegLens@Base 6.1.20030421 + BioseqGetSeqDescr@Base 6.1.20030421 + BioseqGetTitle@Base 6.1.20030421 + BioseqHasBarcodeKeyword@Base 6.1.20100808 + BioseqHasFeature@Base 6.1.20030421 + BioseqHasKeyword@Base 6.1.20110713 + BioseqHasLandMark@Base 6.1.20030421 + BioseqHasMapLegend@Base 6.1.20030421 + BioseqHash@Base 6.1.20030421 + BioseqInsert@Base 6.1.20030421 + BioseqInstAsnRead@Base 6.1.20030421 + BioseqInstAsnWrite@Base 6.1.20030421 + BioseqLabel@Base 6.1.20030421 + BioseqList@Base 6.1.20030421 + BioseqLoad@Base 6.1.20030421 + BioseqLock@Base 6.1.20030421 + BioseqLockById@Base 6.1.20030421 + BioseqMatch@Base 6.1.20030421 + BioseqNew@Base 6.1.20030421 + BioseqOrderInSeqIdList@Base 6.1.20030421 + BioseqOverwrite@Base 6.1.20030421 + BioseqPack@Base 6.1.20030421 + BioseqRawConvert@Base 6.1.20030421 + BioseqRawPack@Base 6.1.20030421 + BioseqRawToFasta@Base 6.1.20030421 + BioseqRawToFastaExtra@Base 6.1.20030421 + BioseqRawToFastaExtraEx@Base 6.1.20030421 + BioseqRawToFastaX@Base 6.1.20030421 + BioseqReload@Base 6.1.20030421 + BioseqReplaceID@Base 6.1.20030421 + BioseqRevComp@Base 6.1.20030421 + BioseqReverse@Base 6.1.20030421 + BioseqSetAsnRead@Base 6.1.20030421 + BioseqSetAsnWrite@Base 6.1.20030421 + BioseqSetFree@Base 6.1.20030421 + BioseqSetFreeComponents@Base 6.1.20030421 + BioseqSetLabel@Base 6.1.20030421 + BioseqSetNew@Base 6.1.20030421 + BioseqToDeltaByGapFeat@Base 6.1.20160908 + BioseqToDeltaMergeGapFeat@Base 6.1.20160908 + BioseqToFasta@Base 6.1.20030421 + BioseqToFastaDump@Base 6.1.20030421 + BioseqToFastaX@Base 6.1.20030421 + BioseqToGeneticCode@Base 6.1.20060301 + BioseqToGnbk@Base 6.1.20030421 + BioseqToTSeq@Base 6.1.20030421 + BioseqTrimN@Base 6.1.20030421 + BioseqUnlock@Base 6.1.20030421 + BioseqUnlockById@Base 6.1.20030421 + Bioseq_repr@Base 6.1.20030421 + Bioseq_set_class@Base 6.1.20030421 + Biostruc2Modelstruc@Base 6.1.20030421 + BiostrucAnnotSetAsnRead@Base 6.1.20030421 + BiostrucAnnotSetAsnWrite@Base 6.1.20030421 + BiostrucAnnotSetFree@Base 6.1.20030421 + BiostrucAnnotSetNew@Base 6.1.20030421 + BiostrucAsnGet@Base 6.1.20030421 + BiostrucAsnRead@Base 6.1.20030421 + BiostrucAsnWrite@Base 6.1.20030421 + BiostrucAvail@Base 6.1.20030421 + BiostrucFeatureNew@Base 6.1.20030421 + BiostrucFeatureSetNew@Base 6.1.20030421 + BiostrucFree@Base 6.1.20030421 + BiostrucIdAsnRead@Base 6.1.20030421 + BiostrucIdAsnWrite@Base 6.1.20030421 + BiostrucIdFree@Base 6.1.20030421 + BiostrucResidueGraphSetFree@Base 6.1.20030421 + BlastDefLineAsnRead@Base 6.1.20030421 + BlastDefLineAsnWrite@Base 6.1.20030421 + BlastDefLineFree@Base 6.1.20030421 + BlastDefLineNew@Base 6.1.20030421 + BlastDefLineSetAsnRead@Base 6.1.20030421 + BlastDefLineSetAsnWrite@Base 6.1.20030421 + BlastDefLineSetFree@Base 6.1.20030421 + BlockPropertyAsnRead@Base 6.1.20070822 + BlockPropertyAsnWrite@Base 6.1.20070822 + BlockPropertyFree@Base 6.1.20070822 + BlockPropertyNew@Base 6.1.20070822 + Blockify@Base 6.1.20030421 + Bond@Base 6.1.20030421 + BuffFree@Base 6.1.20030421 + BufferFree@Base 6.1.20030421 + BuildDefLineFeatClauseList@Base 6.1.20080302 + BuildDefLinesFromFeatClauseListsForOneBsp@Base 6.1.20110713 + BuildDefinitionLinesFromFeatureClauseLists@Base 6.1.20080302 + BuildFieldPairFromFromField@Base 6.1.20081116 + BuildGeneList@Base 6.1.20030421 + BuildNonFeatureListClause@Base 6.1.20100808 + BuildOneDefinitionLine@Base 6.1.20100808 + BuildProtLoc@Base 6.1.20081116 + BuildStringsField@Base 6.1.20160908 + CCStrToInt@Base 6.1.20030421 + CCStrToLong@Base 6.1.20030421 + CDD_RID_glb@Base 6.1.20030421 + CDSGeneProtConstraintFieldAsnRead@Base 6.1.20080302 + CDSGeneProtConstraintFieldAsnWrite@Base 6.1.20080302 + CDSGeneProtConstraintFieldFree@Base 6.1.20080302 + CDSGeneProtFeatureNameFromFeatureType@Base 6.1.20080302 + CDSGeneProtFieldPairAsnRead@Base 6.1.20080302 + CDSGeneProtFieldPairAsnWrite@Base 6.1.20080302 + CDSGeneProtFieldPairFree@Base 6.1.20080302 + CDSGeneProtFieldPairNew@Base 6.1.20080302 + CDSGeneProtNameFromField@Base 6.1.20080302 + CDSGeneProtPseudoConstraintAsnRead@Base 6.1.20080302 + CDSGeneProtPseudoConstraintAsnWrite@Base 6.1.20080302 + CDSGeneProtPseudoConstraintFree@Base 6.1.20080302 + CDSGeneProtPseudoConstraintNew@Base 6.1.20080302 + CDSGeneProtQualConstraintAsnRead@Base 6.1.20080302 + CDSGeneProtQualConstraintAsnWrite@Base 6.1.20080302 + CDSGeneProtQualConstraintFree@Base 6.1.20080302 + CDSGeneProtQualConstraintNew@Base 6.1.20080302 + CDSPartialsFromTranslation@Base 6.1.20160908 + C_atoms@Base 6.1.20030421 + CacheAccnList@Base 6.1.20031028 + Cat2Strings@Base 6.1.20030421 + CautiousSeqEntryCleanup@Base 6.1.20030421 + CdRegionAsnRead@Base 6.1.20030421 + CdRegionAsnWrite@Base 6.1.20030421 + CdRegionFastaStream@Base 6.1.20090301 + CdRegionFastaStreamEx@Base 6.1.20120620 + CdRegionFree@Base 6.1.20030421 + CdRegionNew@Base 6.1.20030421 + CdTransCheck@Base 6.1.20030421 + CddAsynchronousQuery@Base 6.1.20031028 + CddCheckQueue@Base 6.1.20031028 + CddCorrectIDs@Base 6.1.20031028 + CddOpenConnection@Base 6.1.20031028 + CddReadReply@Base 6.1.20031028 + CddSynchronousQuery@Base 6.1.20031028 + CddWaitForReply@Base 6.1.20031028 + ChangeCitArtMLAuthorsToSTD@Base 6.1.20070822 + ChangeCitQual@Base 6.1.20030421 + ChangeMlaBackMLAuthorsToSTD@Base 6.1.20070822 + ChangeSeqIdToWorstID@Base 6.1.20050429 + ChangeSeqLocToWorstID@Base 6.1.20050429 + ChangeStringWithTildes@Base 6.1.20030421 + CheckAndGetNAFeatLoc@Base 6.1.20030421 + CheckBioSourceQuals@Base 6.1.20081116 + CheckBioSourceQualsAsnDisc@Base 6.1.20081116 + CheckBioseqEndsForNAndGap@Base 6.1.20160908 + CheckBufferState@Base 6.1.20030421 + CheckDnaResidue@Base 6.1.20030421 + CheckEndPunctuation@Base 6.1.20030421 + CheckForDuplicateColumns@Base 6.1.20120620 + CheckForEqualSign@Base 6.1.20030421 + CheckForQual@Base 6.1.20030421 + CheckGenProdSetsInSeqEntry@Base 6.1.20080302 + CheckNAFeat@Base 6.1.20030421 + CheckObjTableForExistingText@Base 6.1.20080302 + CheckObjTableForRowsThatApplyToTheSameDestination@Base 6.1.20080302 + CheckPointInBioseq@Base 6.1.20030421 + CheckPubs@Base 6.1.20030421 + CheckSeqLocForPartial@Base 6.1.20030421 + CheckSeqLocForPartialEx@Base 6.1.20110713 + CheckSeqPort@Base 6.1.20030421 + CheckTableForExistingText@Base 6.1.20080302 + CheckTaxNamesAgainstTaxDatabase@Base 6.1.20070822 + CheckXrefFeat@Base 6.1.20030421 + CheckXrefLine@Base 6.1.20030421 + ChooseAllDiscrepancies@Base 6.1.20100808 + ChooseFixableDiscrepancies@Base 6.1.20090719 + CitArtAsnRead@Base 6.1.20030421 + CitArtAsnWrite@Base 6.1.20030421 + CitArtBuild@Base 6.1.20030421 + CitArtFree@Base 6.1.20030421 + CitArtMatch@Base 6.1.20030421 + CitArtNew@Base 6.1.20030421 + CitBookAsnRead@Base 6.1.20030421 + CitBookAsnWrite@Base 6.1.20030421 + CitBookFree@Base 6.1.20030421 + CitBookMatch@Base 6.1.20030421 + CitBookNew@Base 6.1.20030421 + CitGenAsnRead@Base 6.1.20030421 + CitGenAsnWrite@Base 6.1.20030421 + CitGenFree@Base 6.1.20030421 + CitGenMatch@Base 6.1.20030421 + CitGenNew@Base 6.1.20030421 + CitJourAsnRead@Base 6.1.20030421 + CitJourAsnWrite@Base 6.1.20030421 + CitJourFree@Base 6.1.20030421 + CitJourMatch@Base 6.1.20030421 + CitJourNew@Base 6.1.20030421 + CitLetAsnRead@Base 6.1.20030421 + CitLetAsnWrite@Base 6.1.20030421 + CitPatAsnRead@Base 6.1.20030421 + CitPatAsnWrite@Base 6.1.20030421 + CitPatFree@Base 6.1.20030421 + CitPatNew@Base 6.1.20030421 + CitProcAsnRead@Base 6.1.20030421 + CitProcAsnWrite@Base 6.1.20030421 + CitRetractAsnRead@Base 6.1.20030421 + CitRetractAsnWrite@Base 6.1.20030421 + CitRetractFree@Base 6.1.20030421 + CitRetractNew@Base 6.1.20030421 + CitSubAsnRead@Base 6.1.20030421 + CitSubAsnWrite@Base 6.1.20030421 + CitSubBuild@Base 6.1.20030421 + CitSubForSubmission@Base 6.1.20030421 + CitSubFree@Base 6.1.20030421 + CitSubMatch@Base 6.1.20030421 + CitSubNew@Base 6.1.20030421 + CitSubUpdateBuild@Base 6.1.20030421 + CkBracketType@Base 6.1.20030421 + CkLabelType@Base 6.1.20030421 + CkNumberType@Base 6.1.20030421 + CkQualEcnum@Base 6.1.20030421 + CkQualMatchToken@Base 6.1.20030421 + CkQualNote@Base 6.1.20030421 + CkQualPosSeqaa@Base 6.1.20030421 + CkQualPosaa@Base 6.1.20030421 + CkQualSeqaa@Base 6.1.20030421 + CkQualSite@Base 6.1.20030421 + CkQualText@Base 6.1.20030421 + CkQualTokenType@Base 6.1.20030421 + CleanOrgModList@Base 6.1.20080302 + CleanQualValue@Base 6.1.20040204 + CleanStrandsSeqAlign@Base 6.1.20030421 + CleanStructuredComment@Base 6.1.20110713 + CleanSubSourceList@Base 6.1.20080302 + CleanSubSourcePrimers@Base 6.1.20081116 + CleanUpAmbiguousYAC@Base 6.1.20030421 + CleanUpProteinTitles@Base 6.1.20120620 + CleanUpPubdescAuthors@Base 6.1.20100808 + CleanUpPubdescBody@Base 6.1.20100808 + CleanUpSegGap@Base 6.1.20081116 + CleanUpSeqFeat@Base 6.1.20050429 + CleanUpSeqLoc@Base 6.1.20100808 + CleanUpTaxName@Base 6.1.20080302 + CleanupBlocks@Base 6.1.20030421 + CleanupDuplicateGBQuals@Base 6.1.20160908 + CleanupMacroAfterRepeatedUse@Base 6.1.20120620 + CleanupOneSeqFeat@Base 6.1.20100808 + CleanupStringsForOneDescriptor@Base 6.1.20100808 + CleanupSubSourceOrgModOtherDesc@Base 6.1.20110713 + CleanupSubSourceOrgModOtherFeat@Base 6.1.20110713 + ClearBioseqFindCache@Base 6.1.20070822 + ClearFeatIDXrefs@Base 6.1.20050828 + ClearFeatIDs@Base 6.1.20050828 + ClearFeatureIDs@Base 6.1.20060507 + ClearGenBankKeywords@Base 6.1.20030421 + ClearProteinTitlesInNucProts@Base 6.1.20030421 + ClearStructures@Base 6.1.20030421 + ClickableGlobalItemCategorize@Base 6.1.20160908 + ClickableItemFree@Base 6.1.20080302 + ClickableItemObjectListCopy@Base 6.1.20100808 + ClickableItemObjectListFree@Base 6.1.20100808 + CloneRefAsnRead@Base 6.1.20090719 + CloneRefAsnWrite@Base 6.1.20090719 + CloneRefFree@Base 6.1.20090719 + CloneRefNew@Base 6.1.20090719 + CloneSeqAsnRead@Base 6.1.20090719 + CloneSeqAsnWrite@Base 6.1.20090719 + CloneSeqFree@Base 6.1.20090719 + CloneSeqNew@Base 6.1.20090719 + CloneSeqSetAsnRead@Base 6.1.20090719 + CloneSeqSetAsnWrite@Base 6.1.20090719 + CloneSeqSetFree@Base 6.1.20090719 + CloseMMDBAPI@Base 6.1.20030421 + Cn3DWin_Entrez@Base 6.1.20030421 + Cn3D_Redraw@Base 6.1.20030421 + Cn3D_ResetActiveStrucProc@Base 6.1.20030421 + Cn3D_SetQueryCallback@Base 6.1.20030421 + CodeBreakAsnRead@Base 6.1.20030421 + CodeBreakAsnWrite@Base 6.1.20030421 + CodeBreakFree@Base 6.1.20030421 + CodeBreakNew@Base 6.1.20030421 + CodingRegionHasTranslExcept@Base 6.1.20081116 + CodingRegionPartialsFromTranslation@Base 6.1.20160908 + CodonForIndex@Base 6.1.20030421 + CodonToGcIndex@Base 6.1.20030421 + CollAlignFromSeqAnnot@Base 6.1.20030421 + CollateDiscrepancyReports@Base 6.1.20080302 + CollectDiscrepancies@Base 6.1.20070822 + CollectFeatureForAlign@Base 6.1.20030421 + CollectFeatureForAlignNode@Base 6.1.20030421 + CollectFeatureForEditor@Base 6.1.20030421 + CollectItemForAlignment@Base 6.1.20030421 + CollectItemForSeqLoc@Base 6.1.20030421 + CollectItemForSeqLocEx@Base 6.1.20030421 + CollectSegMapSTSAlign@Base 6.1.20030421 + CollectSeqLocFromAlignNode@Base 6.1.20030421 + CollectionDateIsInTheFuture@Base 6.1.20100808 + CollectionDateIsValid@Base 6.1.20100808 + CollectionDatesInOrder@Base 6.1.20160908 + CombineTabTableColumns@Base 6.1.20100808 + CombineUserObjects@Base 6.1.20030421 + CommentHasSuspiciousHtml@Base 6.1.20100808 + CommentRuleAsnRead@Base 6.1.20090719 + CommentRuleAsnWrite@Base 6.1.20090719 + CommentRuleFree@Base 6.1.20090719 + CommentRuleNew@Base 6.1.20090719 + CommentSetAsnRead@Base 6.1.20090719 + CommentSetAsnWrite@Base 6.1.20090719 + CommentSetFree@Base 6.1.20090719 + CommonBytesTableAsnRead@Base 6.1.20080302 + CommonBytesTableAsnWrite@Base 6.1.20080302 + CommonBytesTableFree@Base 6.1.20080302 + CommonBytesTableNew@Base 6.1.20080302 + CommonStringTableAsnRead@Base 6.1.20080302 + CommonStringTableAsnWrite@Base 6.1.20080302 + CommonStringTableFree@Base 6.1.20080302 + CommonStringTableNew@Base 6.1.20080302 + CompSeqAlignFree@Base 6.1.20030421 + CompSeqAlignPrint@Base 6.1.20030421 + CompSeqAnnotFree@Base 6.1.20030421 + CompareFieldTypes@Base 6.1.20081116 + CompareFieldTypesEx@Base 6.1.20160908 + CompareGeneName@Base 6.1.20030421 + CompareSequences@Base 6.1.20120620 + CompareSfpForHeap@Base 6.1.20030421 + CompareStringWithGsp@Base 6.1.20030421 + CompareUserFields@Base 6.1.20160908 + ComplementSeqData@Base 6.1.20080302 + CompletenessFromCompletednessType@Base 6.1.20080302 + CompletenessNameFromCompleteness@Base 6.1.20080302 + ComposeCodonsRecognizedString@Base 6.1.20030421 + ComposeGBQuals@Base 6.1.20030421 + ComposeNoteFromNoteStruct@Base 6.1.20030421 + ConfigureForBigSequence@Base 6.1.20081116 + ConfigureForGenomes@Base 6.1.20081116 + ConfigureForReportType@Base 6.1.20110713 + ConsensusReadAlnFree@Base 6.1.20090301 + ConsensusReadAlnNew@Base 6.1.20090301 + ConsequenceAsnRead@Base 6.1.20100808 + ConsequenceAsnWrite@Base 6.1.20100808 + ConsequenceFree@Base 6.1.20100808 + Consequence_elementAsnRead@Base 6.1.20100808 + Consequence_elementAsnWrite@Base 6.1.20100808 + Consequence_elementFree@Base 6.1.20100808 + Consequence_frameshiftAsnRead@Base 6.1.20100808 + Consequence_frameshiftAsnWrite@Base 6.1.20100808 + Consequence_frameshiftFree@Base 6.1.20100808 + Consequence_frameshiftNew@Base 6.1.20100808 + Consequence_loss_of_heterozygosityAsnRead@Base 6.1.20100808 + Consequence_loss_of_heterozygosityAsnWrite@Base 6.1.20100808 + Consequence_loss_of_heterozygosityFree@Base 6.1.20100808 + Consequence_loss_of_heterozygosityNew@Base 6.1.20100808 + ConsolidateBioSourceNotes@Base 6.1.20160908 + ConsolidateOneLikeOrganismModifier@Base 6.1.20160908 + ConsolidateOneLikeSubSourceModifier@Base 6.1.20160908 + ConstraintChoiceAsnRead@Base 6.1.20080302 + ConstraintChoiceAsnWrite@Base 6.1.20080302 + ConstraintChoiceFree@Base 6.1.20080302 + ConstraintChoiceSetAsnRead@Base 6.1.20080302 + ConstraintChoiceSetAsnWrite@Base 6.1.20080302 + ConstraintChoiceSetFree@Base 6.1.20080302 + ContactInfoAsnRead@Base 6.1.20030421 + ContactInfoAsnWrite@Base 6.1.20030421 + ContactInfoFree@Base 6.1.20030421 + ContactInfoLabel@Base 6.1.20030421 + ContactInfoMatch@Base 6.1.20050605 + ContactInfoNew@Base 6.1.20030421 + ContainsNorMoreSetsOfBracketsOrParentheses@Base 6.1.20110713 + ContainsThreeOrMoreNumbersTogether@Base 6.1.20110713 + ContigFree@Base 6.1.20081116 + ContigNew@Base 6.1.20081116 + ContigReadFree@Base 6.1.20081116 + ContigReadNew@Base 6.1.20081116 + ContigRevComp@Base 6.1.20030421 + ContractClickableItemList@Base 6.1.20081116 + Convert4NaRandom@Base 6.1.20030421 + ConvertActionAsnRead@Base 6.1.20080302 + ConvertActionAsnWrite@Base 6.1.20080302 + ConvertActionFree@Base 6.1.20080302 + ConvertActionNew@Base 6.1.20080302 + ConvertBioSrcToRepeatRegion@Base 6.1.20081116 + ConvertCDSToMatPeptideForOverlappingCDS@Base 6.1.20090719 + ConvertCDSToRNA@Base 6.1.20081116 + ConvertCommentsWithSpacesToStructuredCommentsForSeqEntry@Base 6.1.20100808 + ConvertEmbedQual@Base 6.1.20030421 + ConvertFailedCodingRegionsAndRNAsToMiscFeatures@Base 6.1.20160908 + ConvertFeatureActionAsnRead@Base 6.1.20081116 + ConvertFeatureActionAsnWrite@Base 6.1.20081116 + ConvertFeatureActionFree@Base 6.1.20081116 + ConvertFeatureActionNew@Base 6.1.20081116 + ConvertFeatureDstOptionsAsnRead@Base 6.1.20081116 + ConvertFeatureDstOptionsAsnWrite@Base 6.1.20081116 + ConvertFeatureDstOptionsFree@Base 6.1.20081116 + ConvertFeatureSrcOptionsAsnRead@Base 6.1.20081116 + ConvertFeatureSrcOptionsAsnWrite@Base 6.1.20081116 + ConvertFeatureSrcOptionsFree@Base 6.1.20081116 + ConvertFromCDSOptionsAsnRead@Base 6.1.20081116 + ConvertFromCDSOptionsAsnWrite@Base 6.1.20081116 + ConvertFromCDSOptionsFree@Base 6.1.20081116 + ConvertFromCDSOptionsNew@Base 6.1.20081116 + ConvertGeneToImpFeatFunc@Base 6.1.20160908 + ConvertGeneToRNA@Base 6.1.20081116 + ConvertGlobalDiscrepancyListToText@Base 6.1.20080302 + ConvertGlobalDiscrepancyToText@Base 6.1.20080302 + ConvertImpToImpFunc@Base 6.1.20081116 + ConvertImpToProtFunc@Base 6.1.20081116 + ConvertListToMiscFeat@Base 6.1.20160908 + ConvertLocalIdsToBarcodeIds@Base 6.1.20090719 + ConvertLocalIdsToTSAIds@Base 6.1.20081116 + ConvertMiscFeatToCodingRegion@Base 6.1.20090809 + ConvertMiscFeatToGene@Base 6.1.20110713 + ConvertNonPseudoCDSToMiscFeat@Base 6.1.20081116 + ConvertNsToGaps@Base 6.1.20030421 + ConvertOnePseudoCDSToMiscFeat@Base 6.1.20070822 + ConvertOnePseudoCDSToMiscFeatEx@Base 6.1.20081116 + ConvertProtToImpFunc@Base 6.1.20081116 + ConvertProtToProtFunc@Base 6.1.20081116 + ConvertPseudoCDSToMiscFeatsForEntityID@Base 6.1.20041020 + ConvertPubSrcComDescsToFeats@Base 6.1.20030421 + ConvertRNAToImpFeat@Base 6.1.20120620 + ConvertRegionToImpFunc@Base 6.1.20081116 + ConvertRegionToProtFunc@Base 6.1.20081116 + ConvertRegionToRNAFunc@Base 6.1.20081116 + ConvertSegSetsToDeltaSequences@Base 6.1.20041020 + ConvertSourceFeatDescProc@Base 6.1.20080302 + ConvertToAAImpFeat@Base 6.1.20030421 + ConvertToNAImpFeat@Base 6.1.20030421 + ConvertToTermListForm@Base 6.1.20120620 + ConvertmRNAToCodingRegion@Base 6.1.20160908 + ConverttRNAToGene@Base 6.1.20160908 + CopyActionAsnRead@Base 6.1.20080302 + CopyActionAsnWrite@Base 6.1.20080302 + CopyActionFree@Base 6.1.20080302 + CopyActionNew@Base 6.1.20080302 + CopyDataForProc@Base 6.1.20030421 + CopyFeatureFromAlign@Base 6.1.20030421 + CopyTabTable@Base 6.1.20110713 + CoreBlockAsnRead@Base 6.1.20070822 + CoreBlockAsnWrite@Base 6.1.20070822 + CoreBlockFree@Base 6.1.20070822 + CoreBlockNew@Base 6.1.20070822 + CoreDefAsnRead@Base 6.1.20070822 + CoreDefAsnWrite@Base 6.1.20070822 + CoreDefFree@Base 6.1.20070822 + CoreDefNew@Base 6.1.20070822 + CorrectGenCodes@Base 6.1.20160908 + CorrectGeneFeatLocation@Base 6.1.20030421 + CountGapsInDeltaSeq@Base 6.1.20030421 + CountModifiers@Base 6.1.20080302 + CountNsInSequence@Base 6.1.20081116 + CountPolymorphismsInBioseq@Base 6.1.20081116 + CountProteins@Base 6.1.20070822 + CountSuspectRuleSet@Base 6.1.20110713 + CountTabTableBlanks@Base 6.1.20080302 + CountryBoxesOverlap@Base 6.1.20100808 + CountryClosestToLatLon@Base 6.1.20110713 + CountryContainsLatLon@Base 6.1.20110713 + CountryDataScaleIs@Base 6.1.20110713 + CountryExtremesOverlap@Base 6.1.20110713 + CountryIsInLatLonList@Base 6.1.20110713 + CountryIsNearLatLon@Base 6.1.20110713 + CountryIsValid@Base 6.1.20080302 + CpNoteToCharPtrStack@Base 6.1.20030421 + CreateAnnotDescCommentPolicyUserObject@Base 6.1.20060301 + CreateAsnIndex@Base 6.1.20041020 + CreateContigCloneUserObject@Base 6.1.20030421 + CreateDBLinkUserObject@Base 6.1.20090301 + CreateDefLine@Base 6.1.20030421 + CreateDefLineEx@Base 6.1.20030421 + CreateDefLineExEx@Base 6.1.20041020 + CreateFastaIndex@Base 6.1.20030421 + CreateFeatureFetchPolicyUserObject@Base 6.1.20060301 + CreateGeneOntologyUserObject@Base 6.1.20030421 + CreateGenomeProjectsDBUserObject@Base 6.1.20060301 + CreateJoinRequest@Base 6.1.20100808 + CreateMaskByteStore@Base 6.1.20041020 + CreateMasterAsnIndex@Base 6.1.20070822 + CreateMatPeptideFromCDS@Base 6.1.20090719 + CreateModelEvidenceUserObject@Base 6.1.20030421 + CreateMrnaProteinLinkUserObject@Base 6.1.20030421 + CreateMultiTaxon3Request@Base 6.1.20041020 + CreateNcbiCleanupUserObject@Base 6.1.20090719 + CreateNewCdRgn@Base 6.1.20030421 + CreateNewDescriptor@Base 6.1.20030421 + CreateNewDescriptorOnBioseq@Base 6.1.20030421 + CreateNewFeature@Base 6.1.20030421 + CreateNewFeatureOnBioseq@Base 6.1.20030421 + CreateNewGeneRef@Base 6.1.20030421 + CreateNewProtRef@Base 6.1.20030421 + CreatePropaStruc@Base 6.1.20030421 + CreateRefGeneTrackUserObject@Base 6.1.20030421 + CreateSeqIdFromText@Base 6.1.20080302 + CreateStructuredCommentTableFromSeqEntry@Base 6.1.20100808 + CreateStructuredCommentUserObject@Base 6.1.20060507 + CreateStructuredCommentsForAllFromTable@Base 6.1.20110713 + CreateStructuredCommentsFromFile@Base 6.1.20081116 + CreateStructuredCommentsFromRow@Base 6.1.20100808 + CreateSubmissionUserObject@Base 6.1.20030421 + CreateTPAAssemblyAccessionField@Base 6.1.20100808 + CreateTPAAssemblyFromField@Base 6.1.20100808 + CreateTPAAssemblyToField@Base 6.1.20100808 + CreateTSAIDsFromDeflineInSep@Base 6.1.20120620 + CreateTSAIdsActionAsnRead@Base 6.1.20120620 + CreateTSAIdsActionAsnWrite@Base 6.1.20120620 + CreateTSAIdsActionFree@Base 6.1.20120620 + CreateTSAIdsActionNew@Base 6.1.20120620 + CreateTSAIdsSrcAsnRead@Base 6.1.20120620 + CreateTSAIdsSrcAsnWrite@Base 6.1.20120620 + CreateTSAIdsSrcFree@Base 6.1.20120620 + CreateTaxon3Request@Base 6.1.20041020 + CreateTpaAssemblyUserObject@Base 6.1.20030421 + CreateUnverifiedUserObject@Base 6.1.20110713 + CreateUpdateCitSubFromBestTemplate@Base 6.1.20120620 + CreateWholeInterval@Base 6.1.20030421 + DBLinkFieldPairAsnRead@Base 6.1.20110713 + DBLinkFieldPairAsnWrite@Base 6.1.20110713 + DBLinkFieldPairFree@Base 6.1.20110713 + DBLinkFieldPairNew@Base 6.1.20110713 + DDE_Add@Base 6.1.20030421 + DDE_AddAGap@Base 6.1.20030421 + DDE_AddGapAndSplitNode@Base 6.1.20030421 + DDE_AddGapToEndOfAllRows@Base 6.1.20030421 + DDE_AddGapToStartOfAllRows@Base 6.1.20030421 + DDE_AddIndicesToArray@Base 6.1.20030421 + DDE_AddMsaTxtNode@Base 6.1.20030421 + DDE_AddRulerDescrNode@Base 6.1.20030421 + DDE_AreArraysSame@Base 6.1.20030421 + DDE_AreIdenticalRulerDescrs@Base 6.1.20030421 + DDE_AreIdenticalRulers@Base 6.1.20030421 + DDE_AreSimilarRulerDescrs@Base 6.1.20030421 + DDE_AreSimilarRulers@Base 6.1.20030421 + DDE_AtEndOfStack@Base 6.1.20030421 + DDE_AtStartOfStack@Base 6.1.20030421 + DDE_CenterJustify@Base 6.1.20030421 + DDE_CleanEnds@Base 6.1.20030421 + DDE_Copy@Base 6.1.20030421 + DDE_CreateArraysForDenseSeg@Base 6.1.20030421 + DDE_CreateBlock@Base 6.1.20030421 + DDE_CreateDisplay@Base 6.1.20030421 + DDE_CreateDisplayForBlock@Base 6.1.20030421 + DDE_CreateDisplayForUnAligned@Base 6.1.20030421 + DDE_DecDisplayCoords@Base 6.1.20030421 + DDE_DeleteBlock@Base 6.1.20030421 + DDE_FirstColumnIsAligned@Base 6.1.20030421 + DDE_Free@Base 6.1.20030421 + DDE_FreeStack@Base 6.1.20030421 + DDE_GetAlignIndices@Base 6.1.20030421 + DDE_GetAlignStart2@Base 6.1.20030421 + DDE_GetAlignStart@Base 6.1.20030421 + DDE_GetAlignStop2@Base 6.1.20030421 + DDE_GetAlignStop@Base 6.1.20030421 + DDE_GetBlockWidth@Base 6.1.20030421 + DDE_GetColStatusForRow@Base 6.1.20030421 + DDE_GetDisplayRow@Base 6.1.20030421 + DDE_GetFirstAlignIndex@Base 6.1.20030421 + DDE_GetFirstDisplayCoord@Base 6.1.20030421 + DDE_GetGapIndex@Base 6.1.20030421 + DDE_GetGapStatusOfRows@Base 6.1.20030421 + DDE_GetIndexOfMaster@Base 6.1.20030421 + DDE_GetInsertRow@Base 6.1.20030421 + DDE_GetLastVNP@Base 6.1.20030421 + DDE_GetLen@Base 6.1.20030421 + DDE_GetMsaTxtNode2@Base 6.1.20030421 + DDE_GetMsaTxtNode@Base 6.1.20030421 + DDE_GetMsaTxtNodeGivenBioseqCoord@Base 6.1.20030421 + DDE_GetNumBlocks2@Base 6.1.20030421 + DDE_GetNumBlocks@Base 6.1.20030421 + DDE_GetNumLeadingUnAlignedGaps@Base 6.1.20030421 + DDE_GetNumResidues@Base 6.1.20030421 + DDE_GetNumSegmentsInBlock@Base 6.1.20030421 + DDE_GetNumTrailingUnAlignedGaps@Base 6.1.20030421 + DDE_GetNumVisibleRows@Base 6.1.20030421 + DDE_GetOriginal@Base 6.1.20030421 + DDE_GetParaGPtr2@Base 6.1.20030421 + DDE_GetParaGPtr@Base 6.1.20030421 + DDE_GetPrevVNP@Base 6.1.20030421 + DDE_GetRowOrder@Base 6.1.20030421 + DDE_GetStart@Base 6.1.20030421 + DDE_GetTxtListPtr2@Base 6.1.20030421 + DDE_GetTxtListPtr@Base 6.1.20030421 + DDE_HideAllRows@Base 6.1.20030421 + DDE_HideNewRow@Base 6.1.20030421 + DDE_HideRow@Base 6.1.20030421 + DDE_IncDisplayCoords@Base 6.1.20030421 + DDE_InsertGap@Base 6.1.20030421 + DDE_IsBefore@Base 6.1.20030421 + DDE_IsColValid@Base 6.1.20030421 + DDE_IsEndOfAlignment@Base 6.1.20030421 + DDE_IsLeftAlignedGap@Base 6.1.20030421 + DDE_IsLeftAlignedGapInRows@Base 6.1.20030421 + DDE_IsLeftAlignedGapList@Base 6.1.20030421 + DDE_IsRightAlignedGap@Base 6.1.20030421 + DDE_IsRightAlignedGapInRows@Base 6.1.20030421 + DDE_IsRightAlignedGapList@Base 6.1.20030421 + DDE_IsStartOfAlignment@Base 6.1.20030421 + DDE_IsTerminalRightAlignedGap@Base 6.1.20030421 + DDE_LastColumnIsAligned@Base 6.1.20030421 + DDE_LeftAddNode@Base 6.1.20030421 + DDE_LeftJustify@Base 6.1.20030421 + DDE_LeftMerge@Base 6.1.20030421 + DDE_LeftMergeAndAddNodeList@Base 6.1.20030421 + DDE_MergeNodes@Base 6.1.20030421 + DDE_MergeNodesLists@Base 6.1.20030421 + DDE_MoveRow@Base 6.1.20030421 + DDE_New@Base 6.1.20030421 + DDE_NewStack@Base 6.1.20030421 + DDE_Next@Base 6.1.20030421 + DDE_ParaGFree@Base 6.1.20030421 + DDE_ParaGNew@Base 6.1.20030421 + DDE_PopListFree@Base 6.1.20030421 + DDE_PopListNew@Base 6.1.20030421 + DDE_Prev@Base 6.1.20030421 + DDE_ReMakeRuler@Base 6.1.20030421 + DDE_ReMakeRulerForRow@Base 6.1.20030421 + DDE_RemoveAGap@Base 6.1.20030421 + DDE_RemoveAlignedGapsFromEndOfRow@Base 6.1.20030421 + DDE_RemoveAlignedGapsFromEnds@Base 6.1.20030421 + DDE_RemoveGap@Base 6.1.20030421 + DDE_RemoveGapFromEndOfAllRows@Base 6.1.20030421 + DDE_RemoveGapFromStartOfAllRows@Base 6.1.20030421 + DDE_RestoreRowOrder@Base 6.1.20030421 + DDE_RightAddNode@Base 6.1.20030421 + DDE_RightJustify@Base 6.1.20030421 + DDE_RightMerge@Base 6.1.20030421 + DDE_RightMergeAndAddNodeList@Base 6.1.20030421 + DDE_SetTextStyle@Base 6.1.20030421 + DDE_SetTxtListPtr@Base 6.1.20030421 + DDE_ShiftBlock@Base 6.1.20030421 + DDE_ShiftLeftBoundary@Base 6.1.20030421 + DDE_ShiftLeftBoundaryLeft1@Base 6.1.20030421 + DDE_ShiftLeftBoundaryRight1@Base 6.1.20030421 + DDE_ShiftLeftList@Base 6.1.20030421 + DDE_ShiftRightBoundary@Base 6.1.20030421 + DDE_ShiftRightBoundaryLeft1@Base 6.1.20030421 + DDE_ShiftRightBoundaryRight1@Base 6.1.20030421 + DDE_ShiftRightList@Base 6.1.20030421 + DDE_ShiftRow@Base 6.1.20030421 + DDE_ShiftRowLeft1@Base 6.1.20030421 + DDE_ShiftRowRight1@Base 6.1.20030421 + DDE_ShowAllRows@Base 6.1.20030421 + DDE_ShowNewRow@Base 6.1.20030421 + DDE_ShowRow@Base 6.1.20030421 + DDE_SplitNode@Base 6.1.20030421 + DDE_Verify@Base 6.1.20030421 + DDV_AddColorFunc@Base 6.1.20030421 + DDV_AddColorGlobal@Base 6.1.20030421 + DDV_AddMediaInfo@Base 6.1.20030421 + DDV_AffichageParaG@Base 6.1.20030421 + DDV_BspInfoDelete@Base 6.1.20030421 + DDV_BspInfoDeleteList@Base 6.1.20030421 + DDV_BspInfoNew@Base 6.1.20030421 + DDV_BuildBspEntitiesTbl@Base 6.1.20030421 + DDV_BuildDisp_BlockEditor@Base 6.1.20030421 + DDV_BuildTailDescriptor@Base 6.1.20030421 + DDV_Clear2Default@Base 6.1.20030421 + DDV_ClearColor@Base 6.1.20030421 + DDV_ColorExecute@Base 6.1.20030421 + DDV_ColorIndex@Base 6.1.20030421 + DDV_CopyColorCell@Base 6.1.20030421 + DDV_CreateColorCell@Base 6.1.20030421 + DDV_CreateColorEntry@Base 6.1.20030421 + DDV_CreateColorGlobal@Base 6.1.20030421 + DDV_CreateDefaultColor@Base 6.1.20030421 + DDV_CreateDisplay@Base 6.1.20030421 + DDV_CreateDisplayFromIndex2@Base 6.1.20030421 + DDV_CreateDisplayFromIndex@Base 6.1.20030421 + DDV_CreateDisplayFromIndex_EX2@Base 6.1.20030421 + DDV_CreateDisplayFromIndex_EX@Base 6.1.20030421 + DDV_CreateDisplay_DiscAlign2@Base 6.1.20030421 + DDV_CreateDisplay_DiscAlign@Base 6.1.20030421 + DDV_DefaultColor@Base 6.1.20030421 + DDV_DefaultMediaInfo@Base 6.1.20030421 + DDV_DefaultMediaInfoByLen@Base 6.1.20030421 + DDV_DefaultRange@Base 6.1.20030421 + DDV_DefaultSSColor@Base 6.1.20030421 + DDV_DeleteColor@Base 6.1.20030421 + DDV_DeleteColorEntry@Base 6.1.20030421 + DDV_DeleteColorFunc@Base 6.1.20030421 + DDV_DeleteColorGlobal@Base 6.1.20030421 + DDV_DeleteColorQueue@Base 6.1.20030421 + DDV_DeleteDisplayList@Base 6.1.20030421 + DDV_DeleteMediaInfo@Base 6.1.20030421 + DDV_DeleteParaGList@Base 6.1.20030421 + DDV_DeleteTxtList@Base 6.1.20030421 + DDV_DispFeaturesForPGP@Base 6.1.20030421 + DDV_DisplayBlastPairList@Base 6.1.20030421 + DDV_DisplayDefaultAlign@Base 6.1.20030421 + DDV_DumpSAPInAFile@Base 6.1.20030421 + DDV_DumpSAPInFastaFile@Base 6.1.20030421 + DDV_FreePalette@Base 6.1.20030421 + DDV_GetArticleInfo@Base 6.1.20030421 + DDV_GetBLASTCompLine_1@Base 6.1.20030421 + DDV_GetBLASTCompLine_2@Base 6.1.20030421 + DDV_GetBLASTCompLine_3@Base 6.1.20030421 + DDV_GetBspCoordGivenDispCoord2@Base 6.1.20030421 + DDV_GetBspCoordGivenDispCoord@Base 6.1.20030421 + DDV_GetBspCoordGivenPgpList@Base 6.1.20030421 + DDV_GetCellByPosition@Base 6.1.20030421 + DDV_GetColor@Base 6.1.20030421 + DDV_GetColorGlobal@Base 6.1.20030421 + DDV_GetColorGlobalEx@Base 6.1.20030421 + DDV_GetColorRGB@Base 6.1.20030421 + DDV_GetDispCoordGivenBspCoord@Base 6.1.20030421 + DDV_GetEntryBioSource@Base 6.1.20030421 + DDV_GetFeatColor@Base 6.1.20030421 + DDV_GetFirstDispCoordGivenBspCoordRange@Base 6.1.20030421 + DDV_GetFullFASTAforIdxAli@Base 6.1.20030421 + DDV_GetFullGapFASTAforIdxAli@Base 6.1.20030421 + DDV_GetLastDispCoordGivenBspCoordRange@Base 6.1.20030421 + DDV_GetMediaInfo@Base 6.1.20030421 + DDV_GetSeqAlign@Base 6.1.20030421 + DDV_GetSequenceFromParaG@Base 6.1.20030421 + DDV_IdList@Base 6.1.20030421 + DDV_InitCn3DSAPdispStyles@Base 6.1.20030421 + DDV_InitColour_When_Start@Base 6.1.20030421 + DDV_InitDDESAPdispStyles@Base 6.1.20030421 + DDV_InitDefSAPdispStyles@Base 6.1.20030421 + DDV_IsVisible@Base 6.1.20030421 + DDV_LayoutGap@Base 6.1.20030421 + DDV_LayoutISOColors@Base 6.1.20030421 + DDV_LayoutMaskRegions@Base 6.1.20030421 + DDV_LayoutUAregion@Base 6.1.20030421 + DDV_LoadSSColor@Base 6.1.20030421 + DDV_LocateParaG@Base 6.1.20030421 + DDV_NewColorQueue@Base 6.1.20030421 + DDV_NewMediaInfo@Base 6.1.20030421 + DDV_OpenBspFullSeqPort@Base 6.1.20030421 + DDV_PopDisplay2@Base 6.1.20030421 + DDV_PopDisplay@Base 6.1.20030421 + DDV_PrintPopSetSummary@Base 6.1.20030421 + DDV_PrintStudyName@Base 6.1.20030421 + DDV_ReadSeqBin@Base 6.1.20030421 + DDV_ReadSeqGivenSpp@Base 6.1.20030421 + DDV_RemoveMediaInfo@Base 6.1.20030421 + DDV_RequestColor@Base 6.1.20030421 + DDV_RequestColorbyName@Base 6.1.20030421 + DDV_ResetParaGSeqAlignCoord@Base 6.1.20030421 + DDV_RulerDescrFree@Base 6.1.20030421 + DDV_RulerDescrNew@Base 6.1.20030421 + DDV_STD_AAColor@Base 6.1.20030421 + DDV_STD_NAColor@Base 6.1.20030421 + DDV_SearchAli@Base 6.1.20030421 + DDV_SearchColor@Base 6.1.20030421 + DDV_SearchColorCellbyName@Base 6.1.20030421 + DDV_SearchColorbyName@Base 6.1.20030421 + DDV_SetCellByPosition@Base 6.1.20030421 + DDV_SetColor@Base 6.1.20030421 + DDV_SetColorCell@Base 6.1.20030421 + DDV_SetColorChoice@Base 6.1.20030421 + DDV_SetColorInCell@Base 6.1.20030421 + DDV_SetColorInMediaInfo@Base 6.1.20030421 + DDV_SetColorbyColor@Base 6.1.20030421 + DDV_SetPaletteColor@Base 6.1.20030421 + DDV_SetVisible@Base 6.1.20030421 + DDV_ShowSeqAlign@Base 6.1.20030421 + DNAScoringMatrix@Base 6.1.20030421 + DateAdvance@Base 6.1.20030421 + DateAsnRead@Base 6.1.20030421 + DateAsnWrite@Base 6.1.20030421 + DateCheck@Base 6.1.20030421 + DateClean@Base 6.1.20030421 + DateCurr@Base 6.1.20030421 + DateDup@Base 6.1.20030421 + DateFree@Base 6.1.20030421 + DateMatch@Base 6.1.20030421 + DateNew@Base 6.1.20030421 + DateParse@Base 6.1.20100808 + DatePrint@Base 6.1.20030421 + DateRead@Base 6.1.20030421 + DateTimeCurr@Base 6.1.20030421 + DateToFF@Base 6.1.20040204 + DateToGB@Base 6.1.20030421 + DateWrite@Base 6.1.20030421 + DbHasGi@Base 6.1.20030421 + DbtagAsnRead@Base 6.1.20030421 + DbtagAsnWrite@Base 6.1.20030421 + DbtagCompare@Base 6.1.20081116 + DbtagDup@Base 6.1.20030421 + DbtagFree@Base 6.1.20030421 + DbtagLabel@Base 6.1.20030421 + DbtagMatch@Base 6.1.20030421 + DbtagMatchEx@Base 6.1.20081116 + DbtagNew@Base 6.1.20030421 + DbxrefIsValid@Base 6.1.20090301 + DbxrefsMatch@Base 6.1.20081116 + DeBlockify@Base 6.1.20030421 + DefLineFeatClauseListFree@Base 6.1.20080302 + DefLineModifiers@Base 6.1.20080302 + DefaultFormatBlock@Base 6.1.20040204 + DefaultSubErrorFunc@Base 6.1.20030421 + DefineSubmittorKey@Base 6.1.20030421 + DelFeat@Base 6.1.20030421 + DelNthFeat@Base 6.1.20030421 + DelTailBlank@Base 6.1.20030421 + DeleteBadECNumbers@Base 6.1.20120620 + DeleteBadECNumbersEx@Base 6.1.20120620 + DeleteBogoProduct@Base 6.1.20030421 + DeleteGBQualFromList@Base 6.1.20030421 + DeleteMarkedObjects@Base 6.1.20030421 + DeleteMultipleTitles@Base 6.1.20030421 + DeleteNthAlign@Base 6.1.20030421 + DeleteRegion@Base 6.1.20030421 + DeleteRemainingViews@Base 6.1.20061015 + DeleteSites@Base 6.1.20030421 + DeltaItemAsnRead@Base 6.1.20100808 + DeltaItemAsnWrite@Base 6.1.20100808 + DeltaItemFree@Base 6.1.20100808 + DeltaItemNew@Base 6.1.20100808 + DeltaLitOnly@Base 6.1.20050828 + DeltaSeqAsnRead@Base 6.1.20030421 + DeltaSeqAsnWrite@Base 6.1.20030421 + DeltaSeqFree@Base 6.1.20030421 + DeltaSeqSetAsnRead@Base 6.1.20030421 + DeltaSeqSetAsnWrite@Base 6.1.20030421 + DeltaSeqSetFree@Base 6.1.20030421 + DeltaSeqsToSeqLocs@Base 6.1.20030421 + DenseDiagAsnRead@Base 6.1.20030421 + DenseDiagAsnWrite@Base 6.1.20030421 + DenseDiagCreate@Base 6.1.20030421 + DenseDiagDup@Base 6.1.20030421 + DenseDiagFree@Base 6.1.20030421 + DenseDiagGapList@Base 6.1.20030421 + DenseDiagInsert@Base 6.1.20030421 + DenseDiagLink@Base 6.1.20030421 + DenseDiagLinkSort@Base 6.1.20030421 + DenseDiagNew@Base 6.1.20030421 + DenseDiagPrecede@Base 6.1.20030421 + DenseDiagStats@Base 6.1.20030421 + DenseDiagToDenseSeg@Base 6.1.20030421 + DenseDiagToDenseSegFunc@Base 6.1.20030421 + DenseDiagToGlobalDenseSeg@Base 6.1.20030421 + DenseSegAsnRead@Base 6.1.20030421 + DenseSegAsnWrite@Base 6.1.20030421 + DenseSegFree@Base 6.1.20030421 + DenseSegGapList@Base 6.1.20030421 + DenseSegNew@Base 6.1.20030421 + DenseSegStats@Base 6.1.20030421 + DenseSegToDenseDiag@Base 6.1.20030421 + DependentFieldRuleAsnRead@Base 6.1.20100808 + DependentFieldRuleAsnWrite@Base 6.1.20100808 + DependentFieldRuleFree@Base 6.1.20100808 + DependentFieldRuleNew@Base 6.1.20100808 + DependentFieldSetAsnRead@Base 6.1.20100808 + DependentFieldSetAsnWrite@Base 6.1.20100808 + DependentFieldSetFree@Base 6.1.20100808 + DescStreamFree@Base 6.1.20100808 + DescStreamListFree@Base 6.1.20100808 + DescStreamNew@Base 6.1.20100808 + DescribeBioSourceDifferences@Base 6.1.20120620 + DescribeStructuredCommentDifferences@Base 6.1.20160908 + DetachDataForProc@Base 6.1.20030421 + DisableTRNATests@Base 6.1.20070822 + DiscReportOutputConfigFree@Base 6.1.20081116 + DiscReportOutputConfigNew@Base 6.1.20081116 + DiscrepancyConfigCopy@Base 6.1.20081116 + DiscrepancyConfigFree@Base 6.1.20070822 + DiscrepancyConfigNew@Base 6.1.20070822 + DiscrepancyTestHasAutofix@Base 6.1.20120620 + DispGroupFindNext@Base 6.1.20030421 + DispGroupNum@Base 6.1.20030421 + DoApplyActionToObjectList@Base 6.1.20080302 + DoApplyActionToObjectListEx@Base 6.1.20090301 + DoConvertActionToObjectList@Base 6.1.20080302 + DoConvertActionToObjectListEx@Base 6.1.20090301 + DoCopyActionToObjectList@Base 6.1.20080302 + DoCopyActionToObjectListEx@Base 6.1.20090301 + DoEditActionToObjectList@Base 6.1.20080302 + DoEditActionToObjectListEx@Base 6.1.20090301 + DoEinfoQuery@Base 6.1.20120620 + DoElinkQuery@Base 6.1.20120620 + DoEsearchQuery@Base 6.1.20120620 + DoEsummaryQuery@Base 6.1.20120620 + DoFeaturesMatch@Base 6.1.20081116 + DoImmediateFormat@Base 6.1.20040616 + DoImmediateRemoteFeatureFormat@Base 6.1.20041020 + DoOneBioseq@Base 6.1.20040204 + DoOneSection@Base 6.1.20040204 + DoParseActionToObjectList@Base 6.1.20080302 + DoParseActionToObjectListEx@Base 6.1.20090301 + DoQuickLinkFormat@Base 6.1.20051206 + DoRemoveActionToObjectList@Base 6.1.20080302 + DoRemoveOutsideToObjectList@Base 6.1.20120620 + DoSequenceLengthsMatch@Base 6.1.20120620 + DoSpecialLineBreak@Base 6.1.20030421 + DoSwapActionToObjectList@Base 6.1.20080302 + DoSwapActionToObjectListEx@Base 6.1.20090301 + DoTbl2AsnAutoDef@Base 6.1.20160908 + DocRefAsnRead@Base 6.1.20030421 + DocRefAsnWrite@Base 6.1.20030421 + DocRefFree@Base 6.1.20030421 + DocRefNew@Base 6.1.20030421 + Does3primerAbutGap@Base 6.1.20160908 + Does5primerAbutGap@Base 6.1.20160908 + DoesBiosourceMatchConstraint@Base 6.1.20080302 + DoesCDSEndWithStopCodon@Base 6.1.20160908 + DoesDeltaSeqHaveGapTypeOrLinkage@Base 6.1.20070822 + DoesObjectMatchConstraintChoiceSet@Base 6.1.20081116 + DoesSeqIDListMeetStringConstraint@Base 6.1.20100808 + DoesSeqLitHaveGapTypeOrLinkage@Base 6.1.20070822 + DoesSequenceMatchSequenceConstraint@Base 6.1.20110713 + DoesSingleStringMatchConstraint@Base 6.1.20080302 + DoesStringContainPhrase@Base 6.1.20120620 + DoesStringMatchConstraint@Base 6.1.20080302 + DoesStringMatchSuspectRule@Base 6.1.20110713 + DoesTextContainOnlyTheseWords@Base 6.1.20110713 + E2ReplyAsnRead@Base 6.1.20030421 + E2ReplyAsnWrite@Base 6.1.20030421 + E2ReplyFree@Base 6.1.20030421 + E2RequestAsnRead@Base 6.1.20030421 + E2RequestAsnWrite@Base 6.1.20030421 + E2RequestFree@Base 6.1.20030421 + ECNumberFSAFreeAll@Base 6.1.20061015 + ECnumberNotInList@Base 6.1.20120620 + ECnumberWasDeleted@Base 6.1.20120620 + ECnumberWasReplaced@Base 6.1.20120620 + EGDbtagAsnRead@Base 6.1.20050429 + EGDbtagAsnWrite@Base 6.1.20050429 + EGDbtagFree@Base 6.1.20050429 + EGDbtagNew@Base 6.1.20050429 + ELatLonClassify@Base 6.1.20110713 + EMBLBlockAsnRead@Base 6.1.20030421 + EMBLBlockAsnWrite@Base 6.1.20030421 + EMBLBlockFree@Base 6.1.20030421 + EMBLBlockNew@Base 6.1.20030421 + EMBL_PrintPubs@Base 6.1.20030421 + EditActionAsnRead@Base 6.1.20080302 + EditActionAsnWrite@Base 6.1.20080302 + EditActionFree@Base 6.1.20080302 + EditActionNew@Base 6.1.20080302 + EditFeatureLocationActionAsnRead@Base 6.1.20080302 + EditFeatureLocationActionAsnWrite@Base 6.1.20080302 + EditFeatureLocationActionFree@Base 6.1.20080302 + EditFeatureLocationActionNew@Base 6.1.20080302 + EditLocationStrandAsnRead@Base 6.1.20080302 + EditLocationStrandAsnWrite@Base 6.1.20080302 + EditLocationStrandFree@Base 6.1.20080302 + EditLocationStrandNew@Base 6.1.20080302 + EditTSAIds@Base 6.1.20120620 + EnlargeCharPtrStack@Base 6.1.20030421 + EnlargeSortList@Base 6.1.20030421 + EntityIDToGeneticCode@Base 6.1.20030421 + Entrez2BooleanElementAsnRead@Base 6.1.20030421 + Entrez2BooleanElementAsnWrite@Base 6.1.20030421 + Entrez2BooleanElementFree@Base 6.1.20030421 + Entrez2BooleanExpAsnRead@Base 6.1.20030421 + Entrez2BooleanExpAsnWrite@Base 6.1.20030421 + Entrez2BooleanExpFree@Base 6.1.20030421 + Entrez2BooleanExpNew@Base 6.1.20030421 + Entrez2BooleanReplyAsnRead@Base 6.1.20030421 + Entrez2BooleanReplyAsnWrite@Base 6.1.20030421 + Entrez2BooleanReplyFree@Base 6.1.20030421 + Entrez2BooleanReplyNew@Base 6.1.20030421 + Entrez2BooleanTermAsnRead@Base 6.1.20030421 + Entrez2BooleanTermAsnWrite@Base 6.1.20030421 + Entrez2BooleanTermFree@Base 6.1.20030421 + Entrez2BooleanTermNew@Base 6.1.20030421 + Entrez2DbInfoAsnRead@Base 6.1.20030421 + Entrez2DbInfoAsnWrite@Base 6.1.20030421 + Entrez2DbInfoFree@Base 6.1.20030421 + Entrez2DbInfoNew@Base 6.1.20030421 + Entrez2DocsumAsnRead@Base 6.1.20030421 + Entrez2DocsumAsnWrite@Base 6.1.20030421 + Entrez2DocsumDataAsnRead@Base 6.1.20030421 + Entrez2DocsumDataAsnWrite@Base 6.1.20030421 + Entrez2DocsumDataFree@Base 6.1.20030421 + Entrez2DocsumDataNew@Base 6.1.20030421 + Entrez2DocsumFieldInfoAsnRead@Base 6.1.20030421 + Entrez2DocsumFieldInfoAsnWrite@Base 6.1.20030421 + Entrez2DocsumFieldInfoFree@Base 6.1.20030421 + Entrez2DocsumFieldInfoNew@Base 6.1.20030421 + Entrez2DocsumFree@Base 6.1.20030421 + Entrez2DocsumListAsnRead@Base 6.1.20030421 + Entrez2DocsumListAsnWrite@Base 6.1.20030421 + Entrez2DocsumListFree@Base 6.1.20030421 + Entrez2DocsumListNew@Base 6.1.20030421 + Entrez2DocsumNew@Base 6.1.20030421 + Entrez2DtFilterAsnRead@Base 6.1.20030421 + Entrez2DtFilterAsnWrite@Base 6.1.20030421 + Entrez2DtFilterFree@Base 6.1.20030421 + Entrez2DtFilterNew@Base 6.1.20030421 + Entrez2EvalBooleanAsnRead@Base 6.1.20030421 + Entrez2EvalBooleanAsnWrite@Base 6.1.20030421 + Entrez2EvalBooleanFree@Base 6.1.20030421 + Entrez2EvalBooleanNew@Base 6.1.20030421 + Entrez2FieldInfoAsnRead@Base 6.1.20030421 + Entrez2FieldInfoAsnWrite@Base 6.1.20030421 + Entrez2FieldInfoFree@Base 6.1.20030421 + Entrez2FieldInfoNew@Base 6.1.20030421 + Entrez2GetLinksAsnRead@Base 6.1.20030421 + Entrez2GetLinksAsnWrite@Base 6.1.20030421 + Entrez2GetLinksFree@Base 6.1.20030421 + Entrez2GetLinksNew@Base 6.1.20030421 + Entrez2HierNodeAsnRead@Base 6.1.20030421 + Entrez2HierNodeAsnWrite@Base 6.1.20030421 + Entrez2HierNodeFree@Base 6.1.20030421 + Entrez2HierNodeNew@Base 6.1.20030421 + Entrez2HierQueryAsnRead@Base 6.1.20030421 + Entrez2HierQueryAsnWrite@Base 6.1.20030421 + Entrez2HierQueryFree@Base 6.1.20030421 + Entrez2HierQueryNew@Base 6.1.20030421 + Entrez2IdAsnRead@Base 6.1.20030421 + Entrez2IdAsnWrite@Base 6.1.20030421 + Entrez2IdFree@Base 6.1.20030421 + Entrez2IdListAsnRead@Base 6.1.20030421 + Entrez2IdListAsnWrite@Base 6.1.20030421 + Entrez2IdListFree@Base 6.1.20030421 + Entrez2IdListNew@Base 6.1.20030421 + Entrez2IdNew@Base 6.1.20030421 + Entrez2InfoAsnRead@Base 6.1.20030421 + Entrez2InfoAsnWrite@Base 6.1.20030421 + Entrez2InfoFree@Base 6.1.20030421 + Entrez2InfoNew@Base 6.1.20030421 + Entrez2LimitsAsnRead@Base 6.1.20030421 + Entrez2LimitsAsnWrite@Base 6.1.20030421 + Entrez2LimitsFree@Base 6.1.20030421 + Entrez2LimitsNew@Base 6.1.20030421 + Entrez2LinkCountAsnRead@Base 6.1.20030421 + Entrez2LinkCountAsnWrite@Base 6.1.20030421 + Entrez2LinkCountFree@Base 6.1.20030421 + Entrez2LinkCountListAsnRead@Base 6.1.20030421 + Entrez2LinkCountListAsnWrite@Base 6.1.20030421 + Entrez2LinkCountListFree@Base 6.1.20030421 + Entrez2LinkCountListNew@Base 6.1.20030421 + Entrez2LinkCountNew@Base 6.1.20030421 + Entrez2LinkInfoAsnRead@Base 6.1.20030421 + Entrez2LinkInfoAsnWrite@Base 6.1.20030421 + Entrez2LinkInfoFree@Base 6.1.20030421 + Entrez2LinkInfoNew@Base 6.1.20030421 + Entrez2LinkSetAsnRead@Base 6.1.20030421 + Entrez2LinkSetAsnWrite@Base 6.1.20030421 + Entrez2LinkSetFree@Base 6.1.20030421 + Entrez2LinkSetNew@Base 6.1.20030421 + Entrez2ReplyAsnRead@Base 6.1.20030421 + Entrez2ReplyAsnWrite@Base 6.1.20030421 + Entrez2ReplyFree@Base 6.1.20030421 + Entrez2ReplyNew@Base 6.1.20030421 + Entrez2RequestAsnRead@Base 6.1.20030421 + Entrez2RequestAsnWrite@Base 6.1.20030421 + Entrez2RequestFree@Base 6.1.20030421 + Entrez2RequestNew@Base 6.1.20030421 + Entrez2StreamTerms@Base 6.1.20160908 + Entrez2TermAsnRead@Base 6.1.20030421 + Entrez2TermAsnWrite@Base 6.1.20030421 + Entrez2TermFree@Base 6.1.20030421 + Entrez2TermListAsnRead@Base 6.1.20030421 + Entrez2TermListAsnWrite@Base 6.1.20030421 + Entrez2TermListFree@Base 6.1.20030421 + Entrez2TermListNew@Base 6.1.20030421 + Entrez2TermNew@Base 6.1.20030421 + Entrez2TermPosAsnRead@Base 6.1.20030421 + Entrez2TermPosAsnWrite@Base 6.1.20030421 + Entrez2TermPosFree@Base 6.1.20030421 + Entrez2TermPosNew@Base 6.1.20030421 + Entrez2TermQueryAsnRead@Base 6.1.20030421 + Entrez2TermQueryAsnWrite@Base 6.1.20030421 + Entrez2TermQueryFree@Base 6.1.20030421 + Entrez2TermQueryNew@Base 6.1.20030421 + EntrezASN1Detected@Base 6.1.20030421 + EntrezAddToBooleanRequest@Base 6.1.20030421 + EntrezAsynchronousQuery@Base 6.1.20030421 + EntrezCheckQueue@Base 6.1.20030421 + EntrezCreateBooleanRequest@Base 6.1.20030421 + EntrezCreateDocSumRequest@Base 6.1.20030421 + EntrezCreateEntrezIdList@Base 6.1.20030421 + EntrezCreateEntrezLimits@Base 6.1.20030421 + EntrezCreateGetInfoRequest@Base 6.1.20030421 + EntrezCreateGetLinkCountsRequest@Base 6.1.20030421 + EntrezCreateGetLinkedRequest@Base 6.1.20030421 + EntrezCreateGetLinksRequest@Base 6.1.20030421 + EntrezCreateGetTermHierarchyRequest@Base 6.1.20030421 + EntrezCreateGetTermListRequest@Base 6.1.20030421 + EntrezCreateGetTermPositionRequest@Base 6.1.20030421 + EntrezExtractBooleanReply@Base 6.1.20030421 + EntrezExtractDocsumReply@Base 6.1.20030421 + EntrezExtractErrorReply@Base 6.1.20031028 + EntrezExtractHierNodeReply@Base 6.1.20030421 + EntrezExtractInfoReply@Base 6.1.20030421 + EntrezExtractLinkCountReply@Base 6.1.20030421 + EntrezExtractLinkedReply@Base 6.1.20030421 + EntrezExtractLinksReply@Base 6.1.20030421 + EntrezExtractTermListReply@Base 6.1.20030421 + EntrezExtractTermPosReply@Base 6.1.20030421 + EntrezGetUIDforSeqIdString@Base 6.1.20030421 + EntrezOpenConnection@Base 6.1.20030421 + EntrezReadReply@Base 6.1.20030421 + EntrezSetProgramName@Base 6.1.20030421 + EntrezSetService@Base 6.1.20030421 + EntrezSetUseHistoryFlag@Base 6.1.20030421 + EntrezSynchronousQuery@Base 6.1.20030421 + EntrezWaitForReply@Base 6.1.20030421 + Entrez_Query_Term@Base 6.1.20030421 + EntrezgeneAsnRead@Base 6.1.20050429 + EntrezgeneAsnWrite@Base 6.1.20050429 + EntrezgeneFree@Base 6.1.20050429 + EntrezgeneNew@Base 6.1.20050429 + EntrezgeneSetAsnRead@Base 6.1.20050429 + EntrezgeneSetAsnWrite@Base 6.1.20050429 + EntrezgeneSetFree@Base 6.1.20050429 + EntryStripSerialNumber@Base 6.1.20030421 + EquivalentOrgMod@Base 6.1.20070822 + EquivalentOrgModEx@Base 6.1.20070822 + EquivalentSubSource@Base 6.1.20070822 + EquivalentSubSourceEx@Base 6.1.20070822 + ErrorInfoFree@Base 6.1.20040204 + ErrorInfoNew@Base 6.1.20040204 + EvidenceBasisAsnRead@Base 6.1.20110713 + EvidenceBasisAsnWrite@Base 6.1.20110713 + EvidenceBasisFree@Base 6.1.20110713 + EvidenceBasisNew@Base 6.1.20110713 + ExpandClickableItemList@Base 6.1.20081116 + ExpandDiscrepancyReportTestsFromString@Base 6.1.20080302 + ExperimentSupportAsnRead@Base 6.1.20110713 + ExperimentSupportAsnWrite@Base 6.1.20110713 + ExperimentSupportFree@Base 6.1.20110713 + ExperimentSupportNew@Base 6.1.20110713 + ExportFieldTable@Base 6.1.20081116 + ExportProductUpdateTable@Base 6.1.20110713 + ExportProductUpdateTableWithPrecomputedSuggestions@Base 6.1.20110713 + ExtLocAsnRead@Base 6.1.20100808 + ExtLocAsnWrite@Base 6.1.20100808 + ExtLocFree@Base 6.1.20100808 + ExtLocNew@Base 6.1.20100808 + Extend3PartialSeqIntToEndOrGap@Base 6.1.20090809 + Extend5PartialSeqIntToEndOrGap@Base 6.1.20090809 + ExtendPartialsToEndOrGap@Base 6.1.20090301 + ExtendSeqLocToEnd@Base 6.1.20080302 + ExtendSeqLocToEndOrGap@Base 6.1.20090809 + ExtendSingleGeneOnMRNA@Base 6.1.20061015 + ExtendToFeatureAsnRead@Base 6.1.20120620 + ExtendToFeatureAsnWrite@Base 6.1.20120620 + ExtendToFeatureFree@Base 6.1.20120620 + ExtendToFeatureNew@Base 6.1.20120620 + ExtraCDSCreationActions@Base 6.1.20090809 + ExtractAccession@Base 6.1.20030421 + ExtractBioSourceAndPubs@Base 6.1.20030421 + ExtractNthValNode@Base 6.1.20120620 + FDGetDeflineAsnFromBioseq@Base 6.1.20030421 + FDGetTaxNamesFromBioseq@Base 6.1.20030421 + FFAddNChar@Base 6.1.20040204 + FFAddNewLine@Base 6.1.20040204 + FFAddOneChar@Base 6.1.20040204 + FFAddOneString@Base 6.1.20040204 + FFAddPeriod@Base 6.1.20040204 + FFAddString_NoRedund@Base 6.1.20040204 + FFAddString_NoRedundEx@Base 6.1.20160908 + FFAddTextToString@Base 6.1.20040204 + FFAdvanceChar@Base 6.1.20070822 + FFBSPrint@Base 6.1.20030421 + FFCalculateLineBreak@Base 6.1.20040204 + FFCatenateSubString@Base 6.1.20040204 + FFCharAt@Base 6.1.20040204 + FFEmpty@Base 6.1.20040204 + FFEndPrint@Base 6.1.20040204 + FFEndPrintEx@Base 6.1.20110713 + FFExpandTildes@Base 6.1.20040204 + FFExtractNextCloseLink@Base 6.1.20051206 + FFExtractNextOpenLink@Base 6.1.20051206 + FFFindChar@Base 6.1.20040204 + FFFindSingleChar@Base 6.1.20051206 + FFFlatLoc@Base 6.1.20040204 + FFGetString@Base 6.1.20040204 + FFIsStartOfHTMLAmpersandEscape@Base 6.1.20110713 + FFIsStartOfLink@Base 6.1.20040204 + FFLength@Base 6.1.20040204 + FFLineBreakSplitsHtmlLink@Base 6.1.20051206 + FFLineWrap@Base 6.1.20040204 + FFNextChar@Base 6.1.20070822 + FFOldExpand@Base 6.1.20040204 + FFPrint@Base 6.1.20030421 + FFProcessTildes@Base 6.1.20040204 + FFRecycleString@Base 6.1.20040204 + FFRemainingLength@Base 6.1.20051206 + FFReplaceTildesWithSpaces@Base 6.1.20040204 + FFSavePosition@Base 6.1.20040204 + FFSemicolonSeparateTildes@Base 6.1.20081116 + FFSkipHTMLAmpersandEscape@Base 6.1.20110713 + FFSkipLink@Base 6.1.20040204 + FFStartPrint@Base 6.1.20040204 + FFStartsWith@Base 6.1.20110713 + FFStringSearch@Base 6.1.20040204 + FFToCharPtr@Base 6.1.20040204 + FFToCharPtrEx@Base 6.1.20110713 + FFTrim@Base 6.1.20040204 + FF_Add_NCBI_Base_URL@Base 6.1.20090301 + FF_asn2gb_www_featkey@Base 6.1.20120620 + FF_asn2gb_www_featkey_Ex@Base 6.1.20160908 + FF_www_db_xref@Base 6.1.20040204 + FF_www_featloc@Base 6.1.20040204 + FF_www_specimen_voucher@Base 6.1.20090301 + FastaDefLine@Base 6.1.20030421 + FastaDumpFileFunc@Base 6.1.20030421 + FastaFileFunc@Base 6.1.20030421 + FastaGetOriginalId@Base 6.1.20160908 + FastaId@Base 6.1.20030421 + FastaIdEx@Base 6.1.20160908 + FastaLibBioseqFetchDisable@Base 6.1.20030421 + FastaLibBioseqFetchEnable@Base 6.1.20030421 + FastaReadSequence@Base 6.1.20030421 + FastaReadSequenceMem@Base 6.1.20030421 + FastaSeqLine@Base 6.1.20030421 + FastaSeqLineEx@Base 6.1.20030421 + FastaSeqPort@Base 6.1.20030421 + FastaSeqPortEx@Base 6.1.20030421 + FastaToSeqBuff@Base 6.1.20030421 + FastaToSeqBuffEx@Base 6.1.20030421 + FastaToSeqBuffForDb@Base 6.1.20030421 + FastaToSeqEntry@Base 6.1.20030421 + FastaToSeqEntryEx@Base 6.1.20030421 + FastaToSeqEntryForDb@Base 6.1.20030421 + FastaToSeqEntryInternal@Base 6.1.20030421 + FastaToSeqEntryInternalEx@Base 6.1.20030421 + FeatDefAsnLoad@Base 6.1.20030421 + FeatDefAsnRead@Base 6.1.20030421 + FeatDefAsnWrite@Base 6.1.20030421 + FeatDefFindNext@Base 6.1.20030421 + FeatDefFree@Base 6.1.20030421 + FeatDefLabel@Base 6.1.20030421 + FeatDefNew@Base 6.1.20030421 + FeatDefNum@Base 6.1.20030421 + FeatDefSetAsnRead@Base 6.1.20030421 + FeatDefSetAsnWrite@Base 6.1.20030421 + FeatDefSetFree@Base 6.1.20030421 + FeatDefSetLoad@Base 6.1.20030421 + FeatDefTypeLabel@Base 6.1.20030421 + FeatDispGroupAsnRead@Base 6.1.20030421 + FeatDispGroupAsnWrite@Base 6.1.20030421 + FeatDispGroupFree@Base 6.1.20030421 + FeatDispGroupNew@Base 6.1.20030421 + FeatDispGroupSetAsnRead@Base 6.1.20030421 + FeatDispGroupSetAsnWrite@Base 6.1.20030421 + FeatDispGroupSetFree@Base 6.1.20030421 + FeatListToProp@Base 6.1.20030421 + FeatQualChoiceAsnRead@Base 6.1.20080302 + FeatQualChoiceAsnWrite@Base 6.1.20080302 + FeatQualChoiceFree@Base 6.1.20080302 + FeatQualLegalSetAsnRead@Base 6.1.20080302 + FeatQualLegalSetAsnWrite@Base 6.1.20080302 + FeatQualLegalSetFree@Base 6.1.20080302 + FeatQualLegalValAsnRead@Base 6.1.20080302 + FeatQualLegalValAsnWrite@Base 6.1.20080302 + FeatQualLegalValChoiceAsnRead@Base 6.1.20080302 + FeatQualLegalValChoiceAsnWrite@Base 6.1.20080302 + FeatQualLegalValChoiceFree@Base 6.1.20080302 + FeatQualLegalValFree@Base 6.1.20080302 + FeatQualLegalValNew@Base 6.1.20080302 + FeatureBuild@Base 6.1.20030421 + FeatureFieldAsnRead@Base 6.1.20080302 + FeatureFieldAsnWrite@Base 6.1.20080302 + FeatureFieldCopy@Base 6.1.20090301 + FeatureFieldFree@Base 6.1.20080302 + FeatureFieldFromCDSGeneProtField@Base 6.1.20080302 + FeatureFieldFromRnaQual@Base 6.1.20081116 + FeatureFieldLabel@Base 6.1.20080302 + FeatureFieldLegalAsnRead@Base 6.1.20080302 + FeatureFieldLegalAsnWrite@Base 6.1.20080302 + FeatureFieldLegalFree@Base 6.1.20080302 + FeatureFieldLegalNew@Base 6.1.20080302 + FeatureFieldNew@Base 6.1.20080302 + FeatureFieldPairAsnRead@Base 6.1.20080302 + FeatureFieldPairAsnWrite@Base 6.1.20080302 + FeatureFieldPairFree@Base 6.1.20080302 + FeatureFieldPairNew@Base 6.1.20080302 + FeatureOkForFeatureList@Base 6.1.20080302 + FeatureTypeFromFieldType@Base 6.1.20081116 + FetchFromGiSeqIdCache@Base 6.1.20050429 + FetchFromSeqIdGiCache@Base 6.1.20030421 + FetchSequenceByLoc@Base 6.1.20030421 + FieldConstraintAsnRead@Base 6.1.20081116 + FieldConstraintAsnWrite@Base 6.1.20081116 + FieldConstraintFree@Base 6.1.20081116 + FieldConstraintNew@Base 6.1.20081116 + FieldDiffFree@Base 6.1.20160908 + FieldDiffListFree@Base 6.1.20160908 + FieldDiffNew@Base 6.1.20160908 + FieldEditAsnRead@Base 6.1.20080302 + FieldEditAsnWrite@Base 6.1.20080302 + FieldEditFree@Base 6.1.20080302 + FieldEditNew@Base 6.1.20080302 + FieldPairTypeAsnRead@Base 6.1.20080302 + FieldPairTypeAsnWrite@Base 6.1.20080302 + FieldPairTypeFree@Base 6.1.20080302 + FieldRuleAsnRead@Base 6.1.20090719 + FieldRuleAsnWrite@Base 6.1.20090719 + FieldRuleFree@Base 6.1.20090719 + FieldRuleNew@Base 6.1.20090719 + FieldSetAsnRead@Base 6.1.20090719 + FieldSetAsnWrite@Base 6.1.20090719 + FieldSetFree@Base 6.1.20090719 + FieldTypeAsnRead@Base 6.1.20080302 + FieldTypeAsnWrite@Base 6.1.20080302 + FieldTypeChoiceFromFieldPairTypeChoice@Base 6.1.20081116 + FieldTypeCopy@Base 6.1.20090301 + FieldTypeFree@Base 6.1.20080302 + FieldTypeFromAECRAction@Base 6.1.20080302 + FieldTypeFromString@Base 6.1.20081116 + FieldTypeListCopy@Base 6.1.20081116 + FieldTypeListFree@Base 6.1.20081116 + FileBioseqFetchDisable@Base 6.1.20030421 + FileBioseqFetchEnable@Base 6.1.20030421 + FillInUnaligned@Base 6.1.20030421 + FilterDenseSegAlign@Base 6.1.20030421 + FilterSeqAlign@Base 6.1.20030421 + FilterTheDefline@Base 6.1.20030421 + FindAdjacentDuplicateLocusTagGenes@Base 6.1.20080302 + FindAlignSeqAnnotsForBioseq@Base 6.1.20050429 + FindAlignmentsForBioseq@Base 6.1.20041020 + FindBacterialNonExtendablePartials@Base 6.1.20090719 + FindBadLatLon@Base 6.1.20110713 + FindBadLatLonObjects@Base 6.1.20110713 + FindBadLocusTagsInList@Base 6.1.20080302 + FindBestModifiers@Base 6.1.20080302 + FindBestModifiersEx@Base 6.1.20081116 + FindBestModifiersForDeflineClauseList@Base 6.1.20081116 + FindBestProtein@Base 6.1.20090301 + FindBioseqInList@Base 6.1.20120620 + FindBioseqSetByClass@Base 6.1.20030421 + FindCDSGeneProductConflicts@Base 6.1.20070822 + FindCDSOverlappingtRNAs@Base 6.1.20070822 + FindCDSmRNAGeneLocationDiscrepancies@Base 6.1.20070822 + FindCit@Base 6.1.20030421 + FindCodingRegion@Base 6.1.20030421 + FindCommentDescriptors@Base 6.1.20100808 + FindContigDB@Base 6.1.20030421 + FindContigList@Base 6.1.20030421 + FindDiffsBetweenRuleSets@Base 6.1.20110713 + FindDuplicateGeneLocus@Base 6.1.20070822 + FindExactStringListMatch@Base 6.1.20100808 + FindExtendablePartials@Base 6.1.20100808 + FindFeatDefType@Base 6.1.20030421 + FindFeatDefTypeFromKey@Base 6.1.20030421 + FindFeatFromFeatDefType@Base 6.1.20030421 + FindFeaturesOverlappingSrcFeatures@Base 6.1.20080302 + FindFlankingGenes@Base 6.1.20160908 + FindFrameShiftsInAlignment@Base 6.1.20120620 + FindGlobalFrequentlyAppearingProteinNames@Base 6.1.20160908 + FindHighestFeatureID@Base 6.1.20060507 + FindIDForEntry@Base 6.1.20030421 + FindInconsistentSourceAndDefline@Base 6.1.20070822 + FindKeyFromFeatDefType@Base 6.1.20030421 + FindMismatchedComments@Base 6.1.20100808 + FindMissingProteinIDs@Base 6.1.20070822 + FindModelEvidenceField@Base 6.1.20030421 + FindNcbiAutofixUserObject@Base 6.1.20110713 + FindNcbiCleanupUserObject@Base 6.1.20100808 + FindNonmatchingContigSources@Base 6.1.20070822 + FindNthBioseq@Base 6.1.20030421 + FindNthGeneOnBspByLabelOrLocusTag@Base 6.1.20070822 + FindNthSeqEntry@Base 6.1.20030421 + FindNthSequinEntry@Base 6.1.20030421 + FindNuc@Base 6.1.20030421 + FindNucBioseq@Base 6.1.20030421 + FindNucSeqEntry@Base 6.1.20030421 + FindNucleotideLocationForProteinFeatureConversion@Base 6.1.20081116 + FindOrderedLocations@Base 6.1.20100808 + FindParticalCDSsInCompleteSequences@Base 6.1.20070822 + FindProt@Base 6.1.20030421 + FindProteinIDCallback@Base 6.1.20080302 + FindPseudoDiscrepancies@Base 6.1.20070822 + FindRNAsWithoutProducts@Base 6.1.20070822 + FindReplaceInEntity@Base 6.1.20030421 + FindReplaceString@Base 6.1.20031028 + FindResidueByName@Base 6.1.20041020 + FindSE@Base 6.1.20030421 + FindSeqAlignInSeqEntry@Base 6.1.20030421 + FindSeqAnnotCleanupUserObj@Base 6.1.20100808 + FindSeqIdinSeqAlign@Base 6.1.20030421 + FindSeqSubmitForSeqEntry@Base 6.1.20090719 + FindShortContigs@Base 6.1.20070822 + FindShortIntrons@Base 6.1.20090719 + FindShortIntronsEx@Base 6.1.20160908 + FindShortSequences@Base 6.1.20070822 + FindSpliceSites@Base 6.1.20030421 + FindStringConstraintInConstraintSetForField@Base 6.1.20080302 + FindStringConstraintInConstraintSetForFieldPair@Base 6.1.20080302 + FindStringsInEntity@Base 6.1.20060301 + FindSuspectPhrases@Base 6.1.20070822 + FindSuspectProductNames@Base 6.1.20070822 + FindSuspectProductNamesInEntrezGene@Base 6.1.20110713 + FindSuspectProductNamesInNameList@Base 6.1.20100808 + FindTitlesOnSets@Base 6.1.20100808 + FindTranslExceptNotes@Base 6.1.20070822 + FindTrnaAA3@Base 6.1.20030421 + FindTrnaAA@Base 6.1.20030421 + FindTrnaAAIndex@Base 6.1.20030421 + FindUnknownProteinsWithECNumbers@Base 6.1.20070822 + FindUnverifiedUserObject@Base 6.1.20110713 + FindUopByTag@Base 6.1.20060507 + FindtRNAsOnSameStrand@Base 6.1.20070822 + FiniWWW@Base 6.1.20040204 + FinishHalfXrefs@Base 6.1.20110713 + FirstNameToInitials@Base 6.1.20041020 + FirstResidueInCode@Base 6.1.20030421 + FixAbbreviationsInElement@Base 6.1.20080302 + FixAffiliationShortWordsInElement@Base 6.1.20090719 + FixAuthorCapsAsnRead@Base 6.1.20120620 + FixAuthorCapsAsnWrite@Base 6.1.20120620 + FixAuthorCapsFree@Base 6.1.20120620 + FixAuthorCapsNew@Base 6.1.20120620 + FixBacterialNonExtendablePartials@Base 6.1.20090719 + FixCapitalizationInAuthor@Base 6.1.20100808 + FixCapitalizationInCountryString@Base 6.1.20110713 + FixCapitalizationInCountryStringEx@Base 6.1.20110713 + FixCapitalizationInElement@Base 6.1.20080302 + FixCapitalizationInString@Base 6.1.20100808 + FixCapitalizationInTitle@Base 6.1.20100808 + FixCapsActionAsnRead@Base 6.1.20110713 + FixCapsActionAsnWrite@Base 6.1.20110713 + FixCapsActionFree@Base 6.1.20110713 + FixCapsInPubAffil@Base 6.1.20100808 + FixCapsInPubAffilEx@Base 6.1.20110713 + FixDuplicateColumns@Base 6.1.20120620 + FixExtendablePartials@Base 6.1.20100808 + FixFormatActionAsnRead@Base 6.1.20110713 + FixFormatActionAsnWrite@Base 6.1.20110713 + FixFormatActionFree@Base 6.1.20110713 + FixHumanHosts@Base 6.1.20100808 + FixKnownAbbreviationsInElement@Base 6.1.20110713 + FixLatLonFormat@Base 6.1.20070822 + FixMismatchedComments@Base 6.1.20100808 + FixNonWGSSets@Base 6.1.20100808 + FixOrderedLocations@Base 6.1.20100808 + FixOrgModVoucher@Base 6.1.20160908 + FixOrgNamesInString@Base 6.1.20080302 + FixProductNameProblems@Base 6.1.20120620 + FixProductWordCapitalization@Base 6.1.20110713 + FixPubCapsActionAsnRead@Base 6.1.20100808 + FixPubCapsActionAsnWrite@Base 6.1.20100808 + FixPubCapsActionFree@Base 6.1.20100808 + FixPubCapsActionNew@Base 6.1.20100808 + FixSetsActionAsnRead@Base 6.1.20120620 + FixSetsActionAsnWrite@Base 6.1.20120620 + FixSetsActionFree@Base 6.1.20120620 + FixSrcQualCaps@Base 6.1.20110713 + FixStateAbbreviationsInAffil@Base 6.1.20110713 + FixSuspectProductNamesInEntrezGene@Base 6.1.20120620 + FixSuspectProductNamesInNameList@Base 6.1.20120620 + FixUsaAndStateAbbreviations@Base 6.1.20100808 + FixWrongFuzzOnMinusStrand@Base 6.1.20170106 + FixWrongFuzzOnPlusStrand@Base 6.1.20170106 + FixiPCRPrimerSeqsCallback@Base 6.1.20110713 + FixupCountryQuals@Base 6.1.20110713 + FixupCountryQualsWithLog@Base 6.1.20110713 + FixupMouseStrains@Base 6.1.20110713 + FlatAlignNode@Base 6.1.20030421 + FlatAnnotPartial@Base 6.1.20030421 + FlatAuthor@Base 6.1.20030421 + FlatCleanEquals@Base 6.1.20030421 + FlatDateFromCreate@Base 6.1.20030421 + FlatIgnoreThisPatentPub@Base 6.1.20030421 + FlatJournal@Base 6.1.20030421 + FlatLoc@Base 6.1.20030421 + FlatLocCaret@Base 6.1.20030421 + FlatLocElement@Base 6.1.20030421 + FlatLocHalf@Base 6.1.20030421 + FlatLocHalfCaret@Base 6.1.20030421 + FlatLocPoint@Base 6.1.20030421 + FlatNullAhead@Base 6.1.20030421 + FlatOrganelle@Base 6.1.20030421 + FlatPackedPoint@Base 6.1.20030421 + FlatPubTitle@Base 6.1.20030421 + FlatRefBest@Base 6.1.20030421 + FlatSmartStringMove@Base 6.1.20030421 + FlatSpliceOff@Base 6.1.20030421 + FlatSpliceOn@Base 6.1.20030421 + FlatStringGroupTerm@Base 6.1.20030421 + FlatVirtLoc@Base 6.1.20030421 + FlipAlignment@Base 6.1.20120620 + FlipCodonRecognizedInSeqEntry@Base 6.1.20110713 + FlipEntireAlignmentIfAllSequencesFlipped@Base 6.1.20120620 + FlipTabTableAxes@Base 6.1.20090719 + FlushBuffer@Base 6.1.20030421 + FocusSeqEntry@Base 6.1.20030421 + ForceStripSerialNumber@Base 6.1.20110713 + FormatBasecountBlock@Base 6.1.20040204 + FormatCommentBlock@Base 6.1.20040204 + FormatContigBlock@Base 6.1.20040204 + FormatFeatHeaderBlock@Base 6.1.20040616 + FormatFeatureBlock@Base 6.1.20040204 + FormatFeatureQuals@Base 6.1.20040204 + FormatFtableSourceFeatBlock@Base 6.1.20040616 + FormatOrganismBlock@Base 6.1.20040204 + FormatReferenceBlock@Base 6.1.20040204 + FormatRpsDbParametersAsnRead@Base 6.1.20070822 + FormatRpsDbParametersAsnWrite@Base 6.1.20070822 + FormatRpsDbParametersFree@Base 6.1.20070822 + FormatRpsDbParametersNew@Base 6.1.20070822 + FormatScoreFromSeqAlign@Base 6.1.20030421 + FormatScoreFromSeqAlignEx@Base 6.1.20030421 + FormatScoreFunc@Base 6.1.20030421 + FormatSequenceBlock@Base 6.1.20040204 + FormatSlashBlock@Base 6.1.20040204 + FormatSourceBlock@Base 6.1.20040204 + FormatSourceFeatBlock@Base 6.1.20040204 + FrameShiftReportListFree@Base 6.1.20120620 + FreeAModelstruc@Base 6.1.20030421 + FreeAlignData@Base 6.1.20030421 + FreeAlignNode@Base 6.1.20030421 + FreeAllFuzz@Base 6.1.20030421 + FreeBufferedReadList@Base 6.1.20040505 + FreeClickableList@Base 6.1.20070822 + FreeContextList@Base 6.1.20080302 + FreeDeflineFeatureRequestList@Base 6.1.20100808 + FreeEquivAlign@Base 6.1.20030421 + FreeFeatureList@Base 6.1.20030421 + FreeGlobalDiscrepancyList@Base 6.1.20080302 + FreeLclTree@Base 6.1.20120620 + FreeListDNMS@Base 6.1.20030421 + FreeListOfObjectLists@Base 6.1.20110713 + FreeLog@Base 6.1.20090719 + FreeMedline@Base 6.1.20030421 + FreeMuskSep@Base 6.1.20030421 + FreeObjectList@Base 6.1.20081116 + FreeObjectTableForTabTable@Base 6.1.20080302 + FreePCRSet@Base 6.1.20070822 + FreePubStruct@Base 6.1.20030421 + FreeScanSeqEntryMT@Base 6.1.20090719 + FreeSeqIdGiCache@Base 6.1.20041020 + FreeSeqLocSetComponents@Base 6.1.20070822 + FreeSequenceLists@Base 6.1.20081116 + FreeTabTable@Base 6.1.20080302 + FreeTextAlignList@Base 6.1.20030421 + GBAltSeqDataAsnRead@Base 6.1.20100808 + GBAltSeqDataAsnWrite@Base 6.1.20100808 + GBAltSeqDataFree@Base 6.1.20100808 + GBAltSeqDataNew@Base 6.1.20100808 + GBAltSeqItemAsnRead@Base 6.1.20100808 + GBAltSeqItemAsnWrite@Base 6.1.20100808 + GBAltSeqItemFree@Base 6.1.20100808 + GBAltSeqItemNew@Base 6.1.20100808 + GBBlockAsnRead@Base 6.1.20030421 + GBBlockAsnWrite@Base 6.1.20030421 + GBBlockFree@Base 6.1.20030421 + GBBlockIsCompletelyEmpty@Base 6.1.20100808 + GBBlockNew@Base 6.1.20030421 + GBCommentAsnRead@Base 6.1.20100808 + GBCommentAsnWrite@Base 6.1.20100808 + GBCommentFree@Base 6.1.20100808 + GBCommentNew@Base 6.1.20100808 + GBDescrComFeat@Base 6.1.20030421 + GBFeatErrSpec@Base 6.1.20030421 + GBFeatKeyNameValid@Base 6.1.20030421 + GBFeatKeyQualValid@Base 6.1.20030421 + GBFeatureAsnRead@Base 6.1.20030421 + GBFeatureAsnWrite@Base 6.1.20030421 + GBFeatureFree@Base 6.1.20030421 + GBFeatureNew@Base 6.1.20030421 + GBFeatureSetAsnRead@Base 6.1.20100808 + GBFeatureSetAsnWrite@Base 6.1.20100808 + GBFeatureSetFree@Base 6.1.20100808 + GBFeatureSetNew@Base 6.1.20100808 + GBGetAuthNames@Base 6.1.20030421 + GBIntervalAsnRead@Base 6.1.20030421 + GBIntervalAsnWrite@Base 6.1.20030421 + GBIntervalFree@Base 6.1.20030421 + GBIntervalNew@Base 6.1.20030421 + GBQualAsnRead@Base 6.1.20030421 + GBQualAsnWrite@Base 6.1.20030421 + GBQualFree@Base 6.1.20030421 + GBQualNameValid@Base 6.1.20030421 + GBQualNew@Base 6.1.20030421 + GBQualPresent@Base 6.1.20030421 + GBQualSemanticValid@Base 6.1.20030421 + GBQualSplit@Base 6.1.20030421 + GBQualValidToAdd@Base 6.1.20030421 + GBQual_names_split_ignore@Base 6.1.20030421 + GBQualifierAsnRead@Base 6.1.20030421 + GBQualifierAsnWrite@Base 6.1.20030421 + GBQualifierFree@Base 6.1.20030421 + GBQualifierNew@Base 6.1.20030421 + GBReferenceAsnRead@Base 6.1.20030421 + GBReferenceAsnWrite@Base 6.1.20030421 + GBReferenceFree@Base 6.1.20030421 + GBReferenceNew@Base 6.1.20030421 + GBSeqAsnRead@Base 6.1.20030421 + GBSeqAsnWrite@Base 6.1.20030421 + GBSeqFree@Base 6.1.20030421 + GBSeqNew@Base 6.1.20030421 + GBSetAsnRead@Base 6.1.20030421 + GBSetAsnWrite@Base 6.1.20030421 + GBSetFree@Base 6.1.20030421 + GBStrucCommentAsnRead@Base 6.1.20100808 + GBStrucCommentAsnWrite@Base 6.1.20100808 + GBStrucCommentFree@Base 6.1.20100808 + GBStrucCommentItemAsnRead@Base 6.1.20100808 + GBStrucCommentItemAsnWrite@Base 6.1.20100808 + GBStrucCommentItemFree@Base 6.1.20100808 + GBStrucCommentItemNew@Base 6.1.20100808 + GBStrucCommentNew@Base 6.1.20100808 + GBXrefAsnRead@Base 6.1.20060301 + GBXrefAsnWrite@Base 6.1.20060301 + GBXrefFree@Base 6.1.20060301 + GBXrefNew@Base 6.1.20060301 + GB_GetSeqDescrComms@Base 6.1.20030421 + GB_PrintPubs@Base 6.1.20030421 + GP_GetSeqDescrComms@Base 6.1.20030421 + GR_PrintPubs@Base 6.1.20030421 + GapInLocation@Base 6.1.20080302 + GapInfoFree@Base 6.1.20081116 + GapInfoFromSequenceString@Base 6.1.20081116 + GapInfoNew@Base 6.1.20081116 + GapLocFromSeqFeat@Base 6.1.20160908 + GapToSeqLoc@Base 6.1.20030421 + GapToSeqLocEx@Base 6.1.20041020 + GappedSeqLocsToDeltaSeqs@Base 6.1.20030421 + GatherData@Base 6.1.20030421 + GatherDataForProc@Base 6.1.20030421 + GatherDescrByChoice@Base 6.1.20030421 + GatherDescrListByChoice@Base 6.1.20030421 + GatherEntity@Base 6.1.20030421 + GatherItem@Base 6.1.20030421 + GatherItemIDByData@Base 6.1.20030421 + GatherItemWithLock@Base 6.1.20030421 + GatherObjectsInEntity@Base 6.1.20030421 + GatherObjectsInEntityEx@Base 6.1.20050429 + GatherOverWrite@Base 6.1.20030421 + GatherProcLaunch@Base 6.1.20030421 + GatherSeqEntry@Base 6.1.20030421 + GatherSpecificProcLaunch@Base 6.1.20030421 + GcIndextoCodon@Base 6.1.20030421 + GeneCommentaryAsnRead@Base 6.1.20050429 + GeneCommentaryAsnWrite@Base 6.1.20050429 + GeneCommentaryFree@Base 6.1.20050429 + GeneCommentaryNew@Base 6.1.20050429 + GeneDataFree@Base 6.1.20030421 + GeneFastaStream@Base 6.1.20110713 + GeneFastaStreamEx@Base 6.1.20120620 + GeneNomenclatureAsnRead@Base 6.1.20081116 + GeneNomenclatureAsnWrite@Base 6.1.20081116 + GeneNomenclatureFree@Base 6.1.20081116 + GeneNomenclatureNew@Base 6.1.20081116 + GeneRefAsnRead@Base 6.1.20030421 + GeneRefAsnWrite@Base 6.1.20030421 + GeneRefDup@Base 6.1.20030421 + GeneRefFree@Base 6.1.20030421 + GeneRefMatch@Base 6.1.20070822 + GeneRefNew@Base 6.1.20030421 + GeneSourceAsnRead@Base 6.1.20050429 + GeneSourceAsnWrite@Base 6.1.20050429 + GeneSourceFree@Base 6.1.20050429 + GeneSourceNew@Base 6.1.20050429 + GeneStructFree@Base 6.1.20030421 + GeneStructNew@Base 6.1.20030421 + GeneTrackAsnRead@Base 6.1.20050429 + GeneTrackAsnWrite@Base 6.1.20050429 + GeneTrackFree@Base 6.1.20050429 + GeneTrackNew@Base 6.1.20050429 + GeneXrefTypeAsnRead@Base 6.1.20110713 + GeneXrefTypeAsnWrite@Base 6.1.20110713 + GeneXrefTypeFree@Base 6.1.20110713 + GeneXrefTypeNew@Base 6.1.20110713 + GeneralAsnLoad@Base 6.1.20030421 + GenericCompressDNA@Base 6.1.20030421 + GenericCompressDNAEx@Base 6.1.20030421 + GenericSeqAlignSetAsnWrite@Base 6.1.20030421 + GeneticCodeAsnRead@Base 6.1.20030421 + GeneticCodeAsnWrite@Base 6.1.20030421 + GeneticCodeFind@Base 6.1.20030421 + GeneticCodeFree@Base 6.1.20030421 + GeneticCodeNew@Base 6.1.20030421 + GeneticCodeTableAsnRead@Base 6.1.20030421 + GeneticCodeTableAsnWrite@Base 6.1.20030421 + GeneticCodeTableLoad@Base 6.1.20030421 + GenomeFromLocName@Base 6.1.20081116 + GenomeFromSrcLoc@Base 6.1.20080302 + GenomePartToSegmentMap@Base 6.1.20030421 + Get3LetterSymbol@Base 6.1.20040204 + GetAAFeatLoc@Base 6.1.20030421 + GetAECRExistingTextList@Base 6.1.20081116 + GetAECRSampleFromObjectList@Base 6.1.20081116 + GetAECRSampleFromObjectListEx@Base 6.1.20090301 + GetAECRSampleList@Base 6.1.20081116 + GetAECRSampleListForSeqEntry@Base 6.1.20081116 + GetAaFromtRNA@Base 6.1.20110713 + GetAccVerForBioseq@Base 6.1.20170106 + GetAccessionFromSeqId@Base 6.1.20030421 + GetAccessionVersionFromSeqId@Base 6.1.20041020 + GetAccnVerFromServer@Base 6.1.20040204 + GetAffiliation@Base 6.1.20030421 + GetAlignCoordFromSeqLoc@Base 6.1.20030421 + GetAlignLengthFromAlignNode@Base 6.1.20030421 + GetAlignmentColumnPercentIdentities@Base 6.1.20070822 + GetAllStructuredCommentKeywords@Base 6.1.20160908 + GetAnnotTitle@Base 6.1.20030421 + GetAuthListForPub@Base 6.1.20090719 + GetAuthListPtr@Base 6.1.20040204 + GetAuthorListForPub@Base 6.1.20110713 + GetAuthorListString@Base 6.1.20160908 + GetAuthors@Base 6.1.20030421 + GetAuthorsString@Base 6.1.20040204 + GetBankitCommentsInSep@Base 6.1.20081116 + GetBankitCommentsOnSep@Base 6.1.20081116 + GetBarcodeDiscrepancies@Base 6.1.20070822 + GetBarcodePassFail@Base 6.1.20070822 + GetBarcodeTestFailureReasons@Base 6.1.20081116 + GetBarcodeTestName@Base 6.1.20070822 + GetBarcodeTestNumFromBarcodeTestName@Base 6.1.20070822 + GetBestProteinFeatureUnindexed@Base 6.1.20030421 + GetBestSeqEntryForItem@Base 6.1.20100808 + GetBestTopParentForData@Base 6.1.20030421 + GetBestTopParentForDataEx@Base 6.1.20030421 + GetBestTopParentForItemID@Base 6.1.20030421 + GetBestTopParentForItemIDEx@Base 6.1.20030421 + GetBioProjectID@Base 6.1.20120620 + GetBioProjectIdFromBioseq@Base 6.1.20120620 + GetBioSourceFieldDiffs@Base 6.1.20160908 + GetBioSourceFromObject@Base 6.1.20080302 + GetBiomolForRnaType@Base 6.1.20080302 + GetBiomolNameForRnaType@Base 6.1.20080302 + GetBiopForBsp@Base 6.1.20080302 + GetBioseqGivenIDs@Base 6.1.20030421 + GetBioseqGivenSeqLoc@Base 6.1.20030421 + GetBioseqLabel@Base 6.1.20081116 + GetBioseqMatchesForSequenceIDs@Base 6.1.20110713 + GetBioseqReferencedByAnnot@Base 6.1.20120620 + GetBioseqSetLabel@Base 6.1.20070822 + GetBlockInfo@Base 6.1.20030421 + GetBlockOrientation@Base 6.1.20030421 + GetBondTypeList@Base 6.1.20081116 + GetCDSformRNA@Base 6.1.20110713 + GetCitListsForSeqEntry@Base 6.1.20090301 + GetCitationNumberForMinPub@Base 6.1.20090301 + GetCodesFortRNA@Base 6.1.20110713 + GetCommentRuleFromRuleSet@Base 6.1.20090719 + GetCommonOrgRefForSeqEntry@Base 6.1.20100808 + GetCompletednessTypeList@Base 6.1.20080302 + GetConsensusReadAln@Base 6.1.20090301 + GetCorrectedCountryCapitalization@Base 6.1.20090301 + GetCountryFix@Base 6.1.20070822 + GetDBLinkFieldTypeFromDBLinkName@Base 6.1.20110713 + GetDBLinkNameFromDBLinkFieldType@Base 6.1.20110713 + GetDBXrefFromGene@Base 6.1.20030421 + GetDBxrefFromBioSource@Base 6.1.20100808 + GetDNAbyAccessionDotVersion@Base 6.1.20030421 + GetDaysInMonth@Base 6.1.20081116 + GetDbtagString@Base 6.1.20120620 + GetDefinitionLine@Base 6.1.20030421 + GetDefinitionLineFASTAModifiers@Base 6.1.20120620 + GetDefinitionLineFASTAModifiersByList@Base 6.1.20160908 + GetDeflinePosForFieldName@Base 6.1.20160908 + GetDeflinePosForFieldType@Base 6.1.20090301 + GetDeltaSeqForPosition@Base 6.1.20160908 + GetDeltaSeqLen@Base 6.1.20080302 + GetDescrOnSeqEntry@Base 6.1.20030421 + GetDescriptorNameFromDescriptorType@Base 6.1.20090301 + GetDiscrepancyItemText@Base 6.1.20070822 + GetDiscrepancyItemTextEx@Base 6.1.20081116 + GetDiscrepancyTestConfName@Base 6.1.20070822 + GetDiscrepancyTestSettingName@Base 6.1.20070822 + GetDiscrepancyTypeFromSettingName@Base 6.1.20070822 + GetDuplicateFeaturesForRemoval@Base 6.1.20110713 + GetEMBLDate@Base 6.1.20030421 + GetEntityIdFromObject@Base 6.1.20090719 + GetEntryVersion@Base 6.1.20030421 + GetEquivAlignType@Base 6.1.20030421 + GetExistingTextForParseAction@Base 6.1.20090301 + GetFeatQualByName@Base 6.1.20080302 + GetFeatQualName@Base 6.1.20080302 + GetFeatdefFromFeatureType@Base 6.1.20080302 + GetFeatureNameFromFeatureType@Base 6.1.20080302 + GetFeatureTypeByName@Base 6.1.20080302 + GetFeatureTypeForRnaType@Base 6.1.20081116 + GetFeatureTypeFromFeatdef@Base 6.1.20081116 + GetFeaturesForSuspectRules@Base 6.1.20110713 + GetFieldListForFieldType@Base 6.1.20081116 + GetFieldSampleFromList@Base 6.1.20081116 + GetFieldTypeListFromAECRAction@Base 6.1.20090301 + GetFieldValueForObject@Base 6.1.20081116 + GetFieldValueForObjectEx@Base 6.1.20090301 + GetFirstGBQualMatch@Base 6.1.20120620 + GetFlatFileAffilString@Base 6.1.20090301 + GetFormerCountryList@Base 6.1.20120620 + GetFrameFromLoc@Base 6.1.20030421 + GetFromFieldFromFieldPair@Base 6.1.20080302 + GetGBDate@Base 6.1.20030421 + GetGBFeatKeyForFeature@Base 6.1.20110713 + GetGBSourceLine@Base 6.1.20030421 + GetGIForSeqId@Base 6.1.20030421 + GetGINumFromSip@Base 6.1.20030421 + GetGINumber@Base 6.1.20030421 + GetGIs@Base 6.1.20030421 + GetGPDate@Base 6.1.20030421 + GetGapCode@Base 6.1.20030421 + GetGenCodeForBsp@Base 6.1.20120620 + GetGenDate@Base 6.1.20030421 + GetGeneByFeat@Base 6.1.20120620 + GetGeneByXref@Base 6.1.20120620 + GetGeneForFeature@Base 6.1.20080302 + GetGeneInfoForFeature@Base 6.1.20110713 + GetGeneQuals@Base 6.1.20030421 + GetGeneticCodeFromSeqId@Base 6.1.20030421 + GetGenomeProjectID@Base 6.1.20090719 + GetGenomeProjectIDDescriptor@Base 6.1.20081116 + GetGibbsqComment@Base 6.1.20030421 + GetGibbsqCommentLength@Base 6.1.20030421 + GetGibbsqNumber@Base 6.1.20030421 + GetGibbsqStatement@Base 6.1.20030421 + GetGlobalDiscrepancyItem@Base 6.1.20080302 + GetGlobalDiscrepancyStr@Base 6.1.20080302 + GetImportFeatureName@Base 6.1.20081116 + GetIndexForResidue@Base 6.1.20030421 + GetItemIDGivenPointer@Base 6.1.20030421 + GetKeywordLine@Base 6.1.20030421 + GetKeywordPrefix@Base 6.1.20100808 + GetLODScoreBitValue@Base 6.1.20030421 + GetLODScoreNumber@Base 6.1.20030421 + GetLeftAndRightOffsetsInBioseq@Base 6.1.20090301 + GetLocationList@Base 6.1.20080302 + GetLocusPartsAwp@Base 6.1.20030421 + GetLocusTagPrefixList@Base 6.1.20100808 + GetLongSymbolForAA@Base 6.1.20120620 + GetLongSymbolForResidue@Base 6.1.20030421 + GetMacroBondTypeName@Base 6.1.20081116 + GetMacroSiteTypeName@Base 6.1.20081116 + GetMapFeats@Base 6.1.20030421 + GetMinPubForCitationNumber@Base 6.1.20090301 + GetModifierIndicesFromModList@Base 6.1.20080302 + GetMolInfo@Base 6.1.20030421 + GetMolTypeQual@Base 6.1.20040204 + GetMoleculeClassTypeList@Base 6.1.20080302 + GetMoleculeTypeList@Base 6.1.20080302 + GetMonthAbbrev@Base 6.1.20081116 + GetMonthFromToken@Base 6.1.20081116 + GetMonthNumFromAbbrev@Base 6.1.20081116 + GetMultipleFieldValuesForObject@Base 6.1.20100808 + GetMultipleSourceQualsFromBioSource@Base 6.1.20100808 + GetNAFeatKey@Base 6.1.20030421 + GetNameForResidue@Base 6.1.20030421 + GetNameForRnaField@Base 6.1.20081116 + GetNextDescriptorUnindexed@Base 6.1.20030421 + GetNthValNode@Base 6.1.20120620 + GetNumDBLinkFields@Base 6.1.20110713 + GetNumFeatQual@Base 6.1.20080302 + GetNumOfSeqBlks@Base 6.1.20030421 + GetNumberObjMgrSelect@Base 6.1.20030421 + GetObjectIdString@Base 6.1.20100808 + GetObjectListForAECRAction@Base 6.1.20080302 + GetObjectListForAECRActionEx@Base 6.1.20090301 + GetObjectListForFieldType@Base 6.1.20081116 + GetObjectTableForTabTable@Base 6.1.20080302 + GetOffsetInBioseq@Base 6.1.20030421 + GetOffsetInBioseqEx@Base 6.1.20090301 + GetOffsetInLoc@Base 6.1.20030421 + GetOrderBySeqId@Base 6.1.20030421 + GetOrgModQualFromSrcQual@Base 6.1.20100808 + GetOrgModQualName@Base 6.1.20070822 + GetOrgModSearch@Base 6.1.20100808 + GetOrganismTaxLookupFailuresInSeqEntry@Base 6.1.20070822 + GetOriginList@Base 6.1.20080302 + GetPDBSourceLine@Base 6.1.20030421 + GetPRGDDictionary@Base 6.1.20030421 + GetParentLabelForDiscrepancyItem@Base 6.1.20080302 + GetPointerForIDs@Base 6.1.20030421 + GetPointsForLeftAndRightOffsets@Base 6.1.20090301 + GetProductFromCDS@Base 6.1.20030421 + GetProductSeqId@Base 6.1.20030421 + GetProtFeature@Base 6.1.20090809 + GetProtRefForFeature@Base 6.1.20110713 + GetProtRefInfo@Base 6.1.20030421 + GetProteinLocationForNucleotideFeatureConversion@Base 6.1.20081116 + GetPubClassList@Base 6.1.20160908 + GetPubFieldFromLabel@Base 6.1.20160908 + GetPubFieldFromPub@Base 6.1.20090301 + GetPubFieldLabel@Base 6.1.20081116 + GetPubFieldList@Base 6.1.20081116 + GetPubMLStatus@Base 6.1.20090301 + GetPubMedForUid@Base 6.1.20031028 + GetPubclassFromPub@Base 6.1.20160908 + GetPublicationTitlesInSep@Base 6.1.20081116 + GetPublicationTitlesOnSep@Base 6.1.20081116 + GetPubsAwp@Base 6.1.20030421 + GetQualFromFeature@Base 6.1.20080302 + GetQualFromFeatureEx@Base 6.1.20090301 + GetRNAProductString@Base 6.1.20090301 + GetRNAQualFromFeature@Base 6.1.20110713 + GetRNARefProductString@Base 6.1.20100808 + GetRNATypeList@Base 6.1.20081116 + GetRemovableItemName@Base 6.1.20080302 + GetRepliconChromosomeName@Base 6.1.20120620 + GetRepliconLocation@Base 6.1.20120620 + GetRepliconType@Base 6.1.20120620 + GetRepresentativeBioseqFromBioseqSet@Base 6.1.20081116 + GetResidueForLongSymbol@Base 6.1.20030421 + GetResidueForSymbol@Base 6.1.20030421 + GetRidOfLocusInSeqIds@Base 6.1.20030421 + GetRnaFieldList@Base 6.1.20081116 + GetSUCCommonList@Base 6.1.20160908 + GetScoreAndEvalue@Base 6.1.20030421 + GetScoresbyAccessionDotVersion@Base 6.1.20030421 + GetScoresbySeqId@Base 6.1.20030421 + GetSeqEntryParent@Base 6.1.20030421 + GetSeqFeat@Base 6.1.20030421 + GetSeqFeatCallback@Base 6.1.20030421 + GetSeqIdForGI@Base 6.1.20030421 + GetSeqIdList@Base 6.1.20030421 + GetSeqIdSetForGI@Base 6.1.20030421 + GetSeqLocPartialSet@Base 6.1.20100808 + GetSequenceByBsp@Base 6.1.20030421 + GetSequenceByBspEx@Base 6.1.20160908 + GetSequenceByFeature@Base 6.1.20030421 + GetSequenceByFeatureEx@Base 6.1.20160908 + GetSequenceByIdOrAccnDotVer@Base 6.1.20030421 + GetSequenceByIdOrAccnDotVerEx@Base 6.1.20160908 + GetSequenceByLocation@Base 6.1.20120620 + GetSequenceByLocationEx@Base 6.1.20160908 + GetSequenceForObject@Base 6.1.20081116 + GetSequenceListForConstraint@Base 6.1.20110713 + GetSequenceListsForMatchTypeInTabTable@Base 6.1.20081116 + GetSetClassName@Base 6.1.20100808 + GetSiteTypeList@Base 6.1.20081116 + GetSortOrderName@Base 6.1.20110713 + GetSourceQualDescList@Base 6.1.20080302 + GetSourceQualDescListEx@Base 6.1.20110713 + GetSourceQualFieldListFromBioSource@Base 6.1.20081116 + GetSourceQualFromBioSource@Base 6.1.20080302 + GetSourceQualList@Base 6.1.20080302 + GetSourceQualName@Base 6.1.20080302 + GetSourceQualSampleFieldList@Base 6.1.20081116 + GetSourceQualSampleFieldListForSeqEntryList@Base 6.1.20081116 + GetSourceQualTypeByName@Base 6.1.20080302 + GetSpecialCharacterReplacement@Base 6.1.20080302 + GetSpecialMacCharacterReplacement@Base 6.1.20080302 + GetSpecialPlastidGenCode@Base 6.1.20100808 + GetSpecialWinCharacterReplacement@Base 6.1.20080302 + GetSrcQualFromSubSrcOrOrgMod@Base 6.1.20081116 + GetStateAbbreviation@Base 6.1.20080302 + GetStrForStructuredComment@Base 6.1.20160908 + GetStrandTypeList@Base 6.1.20080302 + GetStructuredCommentFieldDiffs@Base 6.1.20160908 + GetStructuredCommentFieldFromUserObject@Base 6.1.20110713 + GetStructuredCommentFieldList@Base 6.1.20160908 + GetStructuredCommentFieldListFromUserObject@Base 6.1.20160908 + GetStructuredCommentPrefix@Base 6.1.20160908 + GetStructuredCommentPrefixList@Base 6.1.20110713 + GetSubSrcQualFromSrcQual@Base 6.1.20160908 + GetSubsourceQualName@Base 6.1.20070822 + GetSuspectRuleDiscrepancies@Base 6.1.20110713 + GetSymbolForResidue@Base 6.1.20030421 + GetTSAIDDB@Base 6.1.20120620 + GetTechniqueTypeList@Base 6.1.20080302 + GetTextPortionFromString@Base 6.1.20081116 + GetThePointForOffsetEx@Base 6.1.20090301 + GetToFieldFromFieldPair@Base 6.1.20080302 + GetTopSeqEntryForEntityID@Base 6.1.20030421 + GetTopologyTypeList@Base 6.1.20080302 + GetTransitionsFromGapInfo@Base 6.1.20081116 + GetTxAlignOptionValue@Base 6.1.20030421 + GetUniGeneIDForSeqId@Base 6.1.20030421 + GetUnverifiedMatchName@Base 6.1.20120620 + GetUseThisGi@Base 6.1.20030421 + GetValidCategoryName@Base 6.1.20050429 + GetValidCountryList@Base 6.1.20040616 + GetValidErrorName@Base 6.1.20050429 + GetValidExplanation@Base 6.1.20070822 + GetValueFromTwoStringHash@Base 6.1.20110713 + GetWWW@Base 6.1.20040204 + GetYearFromToken@Base 6.1.20081116 + GetmRNAForFeature@Base 6.1.20080302 + GetmRNALocationFromCDSLocation@Base 6.1.20090719 + GetmRNAforCDS@Base 6.1.20110713 + GetncRNAClass@Base 6.1.20100808 + GetsDocsumTitle@Base 6.1.20100808 + GettmRNATagPeptide@Base 6.1.20100808 + GiAccVerAsynchronousQuery@Base 6.1.20041020 + GiAccVerCheckQueue@Base 6.1.20041020 + GiAccVerOpenConnection@Base 6.1.20041020 + GiAccVerReadReply@Base 6.1.20041020 + GiAccVerSynchronousQuery@Base 6.1.20041020 + GiAccVerWaitForReply@Base 6.1.20041020 + GiRevHistAsynchronousQuery@Base 6.1.20030421 + GiRevHistCheckQueue@Base 6.1.20030421 + GiRevHistLookupFarSeqIDs@Base 6.1.20030421 + GiRevHistLookupSeqIdSet@Base 6.1.20030421 + GiRevHistOpenConnection@Base 6.1.20030421 + GiRevHistPreLoadSeqIdGiCache@Base 6.1.20030421 + GiRevHistPreLoadSeqIdGiCacheEx@Base 6.1.20070822 + GiRevHistReadReply@Base 6.1.20030421 + GiRevHistSynchronousQuery@Base 6.1.20030421 + GiRevHistWaitForReply@Base 6.1.20030421 + GiSeqIdSetAsynchronousQuery@Base 6.1.20030421 + GiSeqIdSetCheckQueue@Base 6.1.20030421 + GiSeqIdSetOpenConnection@Base 6.1.20030421 + GiSeqIdSetReadReply@Base 6.1.20030421 + GiSeqIdSetSynchronousQuery@Base 6.1.20030421 + GiSeqIdSetWaitForReply@Base 6.1.20030421 + GiimAsnRead@Base 6.1.20030421 + GiimAsnWrite@Base 6.1.20030421 + GiimFree@Base 6.1.20030421 + GiimNew@Base 6.1.20030421 + GlobalDiscrepReportFree@Base 6.1.20081116 + GlobalDiscrepReportNew@Base 6.1.20081116 + GlobalDiscrepancyFree@Base 6.1.20080302 + GlobalDiscrepancyNew@Base 6.1.20080302 + GuessCountryForLatLon@Base 6.1.20070822 + H_atoms@Base 6.1.20030421 + HasAlignmentsWithLocalIDs@Base 6.1.20120620 + HasAllKeywordsForStructuredComment@Base 6.1.20160908 + HasAnyKeywordForStructuredComment@Base 6.1.20160908 + HasBARCODETech@Base 6.1.20090719 + HasKeywordForStructuredCommentName@Base 6.1.20100808 + HasTaxonomyID@Base 6.1.20110713 + HasTpaUserObject@Base 6.1.20070822 + Heartbeat@Base 6.1.20160908 + INSDAltSeqDataAsnRead@Base 6.1.20100808 + INSDAltSeqDataAsnWrite@Base 6.1.20100808 + INSDAltSeqDataFree@Base 6.1.20100808 + INSDAltSeqDataNew@Base 6.1.20100808 + INSDAltSeqItemAsnRead@Base 6.1.20100808 + INSDAltSeqItemAsnWrite@Base 6.1.20100808 + INSDAltSeqItemFree@Base 6.1.20100808 + INSDAltSeqItemNew@Base 6.1.20100808 + INSDCommentAsnRead@Base 6.1.20100808 + INSDCommentAsnWrite@Base 6.1.20100808 + INSDCommentFree@Base 6.1.20100808 + INSDCommentNew@Base 6.1.20100808 + INSDFeatureAsnRead@Base 6.1.20040505 + INSDFeatureAsnWrite@Base 6.1.20040505 + INSDFeatureFree@Base 6.1.20040505 + INSDFeatureNew@Base 6.1.20040505 + INSDFeatureSetAsnRead@Base 6.1.20100808 + INSDFeatureSetAsnWrite@Base 6.1.20100808 + INSDFeatureSetFree@Base 6.1.20100808 + INSDFeatureSetNew@Base 6.1.20100808 + INSDIntervalAsnRead@Base 6.1.20040505 + INSDIntervalAsnWrite@Base 6.1.20040505 + INSDIntervalFree@Base 6.1.20040505 + INSDIntervalNew@Base 6.1.20040505 + INSDQualifierAsnRead@Base 6.1.20040505 + INSDQualifierAsnWrite@Base 6.1.20040505 + INSDQualifierFree@Base 6.1.20040505 + INSDQualifierNew@Base 6.1.20040505 + INSDReferenceAsnRead@Base 6.1.20040505 + INSDReferenceAsnWrite@Base 6.1.20040505 + INSDReferenceFree@Base 6.1.20040505 + INSDReferenceNew@Base 6.1.20040505 + INSDSeqAsnRead@Base 6.1.20040505 + INSDSeqAsnWrite@Base 6.1.20040505 + INSDSeqFree@Base 6.1.20040505 + INSDSeqNew@Base 6.1.20040505 + INSDSetAsnRead@Base 6.1.20040505 + INSDSetAsnWrite@Base 6.1.20040505 + INSDSetFree@Base 6.1.20040505 + INSDStrucCommentAsnRead@Base 6.1.20100808 + INSDStrucCommentAsnWrite@Base 6.1.20100808 + INSDStrucCommentFree@Base 6.1.20100808 + INSDStrucCommentItemAsnRead@Base 6.1.20100808 + INSDStrucCommentItemAsnWrite@Base 6.1.20100808 + INSDStrucCommentItemFree@Base 6.1.20100808 + INSDStrucCommentItemNew@Base 6.1.20100808 + INSDStrucCommentNew@Base 6.1.20100808 + INSDXrefAsnRead@Base 6.1.20060301 + INSDXrefAsnWrite@Base 6.1.20060301 + INSDXrefFree@Base 6.1.20060301 + INSDXrefNew@Base 6.1.20060301 + ISADeltaSeqsToSeqLoc@Base 6.1.20030421 + ISAGappedSeqLoc@Base 6.1.20030421 + IS_BOGO_Product@Base 6.1.20030421 + IS_NUM_GENE@Base 6.1.20030421 + IS_ntdb_accession@Base 6.1.20030421 + IS_one_loc@Base 6.1.20030421 + IS_protSeqLoc@Base 6.1.20030421 + IS_protdb_accession@Base 6.1.20030421 + IdListsMatch@Base 6.1.20110713 + IdPatAsnRead@Base 6.1.20030421 + IdPatAsnWrite@Base 6.1.20030421 + IdPatFree@Base 6.1.20030421 + IdPatMatch@Base 6.1.20030421 + IdPatNew@Base 6.1.20030421 + IdentifiedByHasSpecWords@Base 6.1.20160908 + ImpFeatAsnRead@Base 6.1.20030421 + ImpFeatAsnWrite@Base 6.1.20030421 + ImpFeatFree@Base 6.1.20030421 + ImpFeatNew@Base 6.1.20030421 + ImportNucleotideFASTASequencesFromFile@Base 6.1.20120620 + ImportNucleotideFASTASequencesFromFileEx@Base 6.1.20160908 + ImportProteinFASTASequences@Base 6.1.20120620 + ImposeCDSPartials@Base 6.1.20160908 + ImposeCodingRegionPartials@Base 6.1.20160908 + ImposeGenePartials@Base 6.1.20160908 + ImprintAsnRead@Base 6.1.20030421 + ImprintAsnWrite@Base 6.1.20030421 + ImprintFree@Base 6.1.20030421 + ImprintMatch@Base 6.1.20030421 + ImprintNew@Base 6.1.20030421 + IncompatibleGapFeatQuals@Base 6.1.20160908 + IndexBlocks@Base 6.1.20030421 + IndexForCodon@Base 6.1.20030421 + IndexNewBlocks@Base 6.1.20030421 + IndexedFastaLibFetchDisable@Base 6.1.20030421 + IndexedFastaLibFetchEnable@Base 6.1.20030421 + InferenceSupportAsnRead@Base 6.1.20110713 + InferenceSupportAsnWrite@Base 6.1.20110713 + InferenceSupportFree@Base 6.1.20110713 + InferenceSupportNew@Base 6.1.20110713 + InitFeatureRequests@Base 6.1.20080302 + InitOrganismDescriptionModifiers@Base 6.1.20100808 + InitValNodeBlock@Base 6.1.20110713 + InitWWW@Base 6.1.20040204 + InstantiateMatPeptideProducts@Base 6.1.20081116 + InstantiateNCTitle@Base 6.1.20100808 + InstantiateNMTitles@Base 6.1.20100808 + InstantiateProteinTitles@Base 6.1.20030421 + IntFuzzAsnRead@Base 6.1.20030421 + IntFuzzAsnWrite@Base 6.1.20030421 + IntFuzzClip@Base 6.1.20030421 + IntFuzzFree@Base 6.1.20030421 + IntFuzzNew@Base 6.1.20030421 + IntFuzzPrint@Base 6.1.20030421 + IsBarcodeID@Base 6.1.20070822 + IsBioseqInAnyAlignment@Base 6.1.20120620 + IsBioseqInGPS@Base 6.1.20081116 + IsBioseqOrganelle@Base 6.1.20160908 + IsBioseqSetInGPS@Base 6.1.20081116 + IsCDSGeneProtQualConstraintEmpty@Base 6.1.20080302 + IsConversionSupported@Base 6.1.20081116 + IsCorrectLatLonFormat@Base 6.1.20070822 + IsCountryInLatLonList@Base 6.1.20070822 + IsDBLinkObject@Base 6.1.20160908 + IsDeltaSeqGap@Base 6.1.20070822 + IsDeltaSeqKnownGap@Base 6.1.20070822 + IsDeltaSeqUnknownGap@Base 6.1.20070822 + IsDeltaSeqWithFarpointers@Base 6.1.20120620 + IsEllipsis@Base 6.1.20040204 + IsFeatInGPS@Base 6.1.20081116 + IsFeatureFieldEmpty@Base 6.1.20080302 + IsFieldConstraintEmpty@Base 6.1.20081116 + IsFieldSortable@Base 6.1.20110713 + IsFieldTypeCDSProduct@Base 6.1.20080302 + IsFieldTypeEmpty@Base 6.1.20080302 + IsFieldTypeNonText@Base 6.1.20100808 + IsFixPubCapsActionEmpty@Base 6.1.20100808 + IsGeneXrefRedundant@Base 6.1.20110713 + IsGenomeProjectIDDescriptor@Base 6.1.20081116 + IsIBOL@Base 6.1.20100808 + IsIdenticalPublication@Base 6.1.20160908 + IsLocAInBonSameStrand@Base 6.1.20080302 + IsLocationConstraintEmpty@Base 6.1.20081116 + IsLocationOrganelle@Base 6.1.20110713 + IsMobileElement@Base 6.1.20080302 + IsMolinfoFieldConstraintEmpty@Base 6.1.20110713 + IsMrnaSequence@Base 6.1.20160908 + IsNCBIFileID@Base 6.1.20110713 + IsNonGappedLiteral@Base 6.1.20030421 + IsNonTextFieldType@Base 6.1.20081116 + IsNonTextSourceQual@Base 6.1.20080302 + IsNuclAcc@Base 6.1.20030421 + IsNucleotideChar@Base 6.1.20030421 + IsNumString@Base 6.1.20030421 + IsPopPhyEtcSet@Base 6.1.20030421 + IsPrefixPlusNumbers@Base 6.1.20110713 + IsProductNameOk@Base 6.1.20100808 + IsProteinChar@Base 6.1.20030421 + IsPseudo@Base 6.1.20090301 + IsPublicationConstraintEmpty@Base 6.1.20081116 + IsQualValidForFeature@Base 6.1.20110713 + IsRegulatorySubtype@Base 6.1.20160908 + IsRnaQualEmpty@Base 6.1.20081116 + IsSearchFuncEmpty@Base 6.1.20110713 + IsSeqIndexMap@Base 6.1.20030421 + IsSequenceChar@Base 6.1.20030421 + IsSequenceConstraintEmpty@Base 6.1.20080302 + IsSequenceFirstInPairwise@Base 6.1.20050429 + IsShortrRNA@Base 6.1.20160908 + IsSkippableDbtag@Base 6.1.20070822 + IsSourceConstraintEmpty@Base 6.1.20080302 + IsSpName@Base 6.1.20080302 + IsStringConstraintEmpty@Base 6.1.20080302 + IsStringInNcRNAClassList@Base 6.1.20080302 + IsStringInRecombinationClassList@Base 6.1.20170106 + IsStringInRegulatoryClassList@Base 6.1.20160908 + IsStringInSpanInList@Base 6.1.20080302 + IsStructuredCommentPrefix@Base 6.1.20160908 + IsStructuredCommentSuffix@Base 6.1.20160908 + IsStructuredCommentValid@Base 6.1.20090719 + IsStructuredCommentValidForRule@Base 6.1.20090719 + IsSuspectRuleEmpty@Base 6.1.20110713 + IsTSA@Base 6.1.20081116 + IsTestTypeAppropriateForReportType@Base 6.1.20081116 + IsTextMarkerEmpty@Base 6.1.20100808 + IsTextTransformEmpty@Base 6.1.20110713 + IsTranslationConstraintEmpty@Base 6.1.20110713 + IsUnverifiedUserObject@Base 6.1.20110713 + IsUserFieldStructuredCommentPrefixOrSuffix@Base 6.1.20160908 + IsUserObjectStructuredComment@Base 6.1.20110713 + IsValidId@Base 6.1.20030421 + IsValidIdChar@Base 6.1.20030421 + IsWholeWordSubstr@Base 6.1.20040204 + Is_Local_Seq@Base 6.1.20030421 + JoinShortTrnas@Base 6.1.20160908 + KeyFromTag@Base 6.1.20030421 + KeyTagClear@Base 6.1.20030421 + KeyTagInit@Base 6.1.20030421 + KeywordForStructuredCommentName@Base 6.1.20100808 + KeywordForStructuredCommentPrefix@Base 6.1.20160908 + KnownAbbreviationList@Base 6.1.20110713 + LabelUserField@Base 6.1.20160908 + LastResidueInCode@Base 6.1.20030421 + LatLonAutocorrectList@Base 6.1.20110713 + LeaveBestCDD@Base 6.1.20030421 + LinkCDSmRNAbyLabel@Base 6.1.20061015 + LinkCDSmRNAbyLabelAndLocation@Base 6.1.20110713 + LinkCDSmRNAbyOverlap@Base 6.1.20050828 + LinkCDSmRNAbyProduct@Base 6.1.20050828 + LinkGeneData@Base 6.1.20030421 + LinkSetAsnRead@Base 6.1.20030421 + LinkSetAsnWrite@Base 6.1.20030421 + LinkSetFree@Base 6.1.20030421 + LinkSetNew@Base 6.1.20030421 + LinkTwoFeatures@Base 6.1.20110713 + LinkageEvidenceAsnRead@Base 6.1.20120620 + LinkageEvidenceAsnWrite@Base 6.1.20120620 + LinkageEvidenceFree@Base 6.1.20120620 + LinkageEvidenceNew@Base 6.1.20120620 + ListBioseqsInSeqEntry@Base 6.1.20120620 + ListCodingRegionsContainedInSourceFeatures@Base 6.1.20080302 + ListFeaturesInLocation@Base 6.1.20080302 + ListFeaturesOverlappingLocation@Base 6.1.20080302 + ListFeaturesOverlappingLocationEx@Base 6.1.20100808 + ListFree@Base 6.1.20030421 + ListSequencesWithAlignments@Base 6.1.20120620 + LoadCommentRuleSet@Base 6.1.20090719 + LoadDict@Base 6.1.20030421 + LoadLandMarkGene@Base 6.1.20030421 + LoadPap@Base 6.1.20030421 + LoadProteinForCdRegion@Base 6.1.20030421 + LocNameFromGenome@Base 6.1.20080302 + LocalAlignToSeqAnnotDimn@Base 6.1.20030421 + LocalSeqFetchDisable@Base 6.1.20030421 + LocalSeqFetchInit@Base 6.1.20030421 + LocateInSeqAlign@Base 6.1.20030421 + LocateInSeqAlignDenSeg@Base 6.1.20030421 + LocationChoiceAsnRead@Base 6.1.20080302 + LocationChoiceAsnWrite@Base 6.1.20080302 + LocationChoiceFree@Base 6.1.20080302 + LocationConstraintAsnRead@Base 6.1.20080302 + LocationConstraintAsnWrite@Base 6.1.20080302 + LocationConstraintFree@Base 6.1.20080302 + LocationConstraintNew@Base 6.1.20080302 + LocationContainsGaps@Base 6.1.20080302 + LocationEditTypeAsnRead@Base 6.1.20080302 + LocationEditTypeAsnWrite@Base 6.1.20080302 + LocationEditTypeFree@Base 6.1.20080302 + LocationHasNullsBetween@Base 6.1.20030421 + LocationIntervalAsnRead@Base 6.1.20080302 + LocationIntervalAsnWrite@Base 6.1.20080302 + LocationIntervalFree@Base 6.1.20080302 + LocationIntervalNew@Base 6.1.20080302 + LocationPosConstraintAsnRead@Base 6.1.20100808 + LocationPosConstraintAsnWrite@Base 6.1.20100808 + LocationPosConstraintFree@Base 6.1.20100808 + LockFarAlignmentBioseqs@Base 6.1.20061015 + LockFarComponents@Base 6.1.20030421 + LockFarComponentsEx@Base 6.1.20030421 + LogTrimmedLocation@Base 6.1.20160908 + LookForECnumberPattern@Base 6.1.20070822 + LookForFuzz@Base 6.1.20030421 + LooksLikeISSN@Base 6.1.20120620 + LookupArticlesWithEutils@Base 6.1.20160908 + LookupCountryByLatLon@Base 6.1.20110713 + LookupFarSeqIDs@Base 6.1.20030421 + LookupPubsInSeqEntry@Base 6.1.20160908 + LookupWaterByLatLon@Base 6.1.20110713 + LoopConstraintAsnRead@Base 6.1.20070822 + LoopConstraintAsnWrite@Base 6.1.20070822 + LoopConstraintFree@Base 6.1.20070822 + LoopConstraintNew@Base 6.1.20070822 + MacroActionChoiceAsnRead@Base 6.1.20080302 + MacroActionChoiceAsnWrite@Base 6.1.20080302 + MacroActionChoiceFree@Base 6.1.20080302 + MacroActionListAsnRead@Base 6.1.20080302 + MacroActionListAsnWrite@Base 6.1.20080302 + MacroActionListFree@Base 6.1.20080302 + MacroBondTypeFromAsn1BondType@Base 6.1.20081116 + MacroSiteTypeFromAsn1SiteType@Base 6.1.20081116 + MakeAModelstruc@Base 6.1.20030421 + MakeAnAccession@Base 6.1.20030421 + MakeAutoDefOptionsUserObject@Base 6.1.20160908 + MakeBaseAccession@Base 6.1.20030421 + MakeBaseLocusAwp@Base 6.1.20030421 + MakeBlastnStyleScore@Base 6.1.20030421 + MakeCdRegionFeature@Base 6.1.20030421 + MakeCodeBreakList@Base 6.1.20070822 + MakeCommentFeature@Base 6.1.20030421 + MakeCompleteChromTitle@Base 6.1.20081116 + MakeFastaStreamIdSuffix@Base 6.1.20160908 + MakeFeatureFieldField@Base 6.1.20110713 + MakeFeatureRequestsMatchExpectedTitle@Base 6.1.20100808 + MakeFeatureXrefsFromProteinIdQuals@Base 6.1.20110713 + MakeFeatureXrefsFromTranscriptIdQuals@Base 6.1.20110713 + MakeGBSelectNote@Base 6.1.20030421 + MakeGeneFeature@Base 6.1.20030421 + MakeGeneLocForFeatureLoc@Base 6.1.20120620 + MakeGeneXrefActionAsnRead@Base 6.1.20110713 + MakeGeneXrefActionAsnWrite@Base 6.1.20110713 + MakeGeneXrefActionFree@Base 6.1.20110713 + MakeGeneXrefActionNew@Base 6.1.20110713 + MakeGroupsForUniqueValues@Base 6.1.20100808 + MakeImpFeature@Base 6.1.20030421 + MakeNewProteinSeqId@Base 6.1.20030421 + MakeNewProteinSeqIdEx@Base 6.1.20030421 + MakeNewProteinSeqIdExMT@Base 6.1.20030421 + MakeProteinFeature@Base 6.1.20030421 + MakePubFeature@Base 6.1.20030421 + MakeRNAFeature@Base 6.1.20030421 + MakeRegionFeature@Base 6.1.20030421 + MakeReversedSeqIdString@Base 6.1.20030421 + MakeSeqEntryFromContig@Base 6.1.20081116 + MakeSeqEntryFromRead@Base 6.1.20090301 + MakeSeqID@Base 6.1.20030421 + MakeSequinDataFromAlignment@Base 6.1.20040505 + MakeSequinDataFromAlignmentEx@Base 6.1.20041020 + MakeSiteFeature@Base 6.1.20030421 + MakeSyntheticSeqFeat@Base 6.1.20030421 + MakeTextTextMarker@Base 6.1.20100808 + MakeTokensFromLine@Base 6.1.20081116 + MakeTwoStringHashFromTabTable@Base 6.1.20110713 + MakeUniqueSeqID@Base 6.1.20030421 + MapAnchorToLoc@Base 6.1.20030421 + MapLayoutFree@Base 6.1.20030421 + MapLocToAnchor@Base 6.1.20030421 + MapNa2ByteTo4BitString@Base 6.1.20040204 + MapNa2ByteToIUPACString@Base 6.1.20030421 + MapNa2ByteToNa4String@Base 6.1.20030421 + MapNa4ByteTo4BitString@Base 6.1.20040204 + MapNa4ByteToIUPACString@Base 6.1.20030421 + MapNa4ByteToIUPACplusGapString@Base 6.1.20050605 + MapsAsnRead@Base 6.1.20050429 + MapsAsnWrite@Base 6.1.20050429 + MapsFree@Base 6.1.20050429 + MapsNew@Base 6.1.20050429 + MarkFeaturesInGapsForDeletion@Base 6.1.20080302 + MarkOverlappingCDSs@Base 6.1.20090719 + MatchAAGeneToFeat@Base 6.1.20030421 + MatchArrayStringIcase@Base 6.1.20030421 + MatchNAGeneToFeat@Base 6.1.20030421 + MatchRef@Base 6.1.20040204 + MatchTypeFree@Base 6.1.20081116 + MatchTypeFromTableMatchType@Base 6.1.20120620 + MatchTypeNew@Base 6.1.20081116 + MaxLengthSeqLoc@Base 6.1.20030421 + MedlarsEntryAsnRead@Base 6.1.20030421 + MedlarsEntryAsnWrite@Base 6.1.20030421 + MedlarsEntryFree@Base 6.1.20030421 + MedlarsEntryNew@Base 6.1.20030421 + MedlarsEntryToAbsFile@Base 6.1.20030421 + MedlarsEntryToDataFile@Base 6.1.20030421 + MedlarsEntryToDocFile@Base 6.1.20030421 + MedlarsRecordAsnRead@Base 6.1.20030421 + MedlarsRecordAsnWrite@Base 6.1.20030421 + MedlarsRecordFree@Base 6.1.20030421 + MedlarsRecordNew@Base 6.1.20030421 + MedlineAsnLoad@Base 6.1.20030421 + MedlineEntryAsnRead@Base 6.1.20030421 + MedlineEntryAsnWrite@Base 6.1.20030421 + MedlineEntryFree@Base 6.1.20030421 + MedlineEntryNew@Base 6.1.20030421 + MedlineEntryToAbsFile@Base 6.1.20030421 + MedlineEntryToDataFile@Base 6.1.20030421 + MedlineEntryToDocFile@Base 6.1.20030421 + MedlineFieldAsnRead@Base 6.1.20030421 + MedlineFieldAsnWrite@Base 6.1.20030421 + MedlineFieldFree@Base 6.1.20030421 + MedlineFieldNew@Base 6.1.20030421 + MedlineMeshAsnRead@Base 6.1.20030421 + MedlineMeshAsnWrite@Base 6.1.20030421 + MedlineMeshFree@Base 6.1.20030421 + MedlineMeshNew@Base 6.1.20030421 + MedlineRnAsnRead@Base 6.1.20030421 + MedlineRnAsnWrite@Base 6.1.20030421 + MedlineRnFree@Base 6.1.20030421 + MedlineRnNew@Base 6.1.20030421 + MedlineSiAsnRead@Base 6.1.20030421 + MedlineSiAsnWrite@Base 6.1.20030421 + MedlineSiFree@Base 6.1.20030421 + MergeAdjacentAnnotsInList@Base 6.1.20100808 + MergeAssemblyGapFeats@Base 6.1.20160908 + MergeFFValNodeStrs@Base 6.1.20040204 + MergeFeatureIntervalsToParts@Base 6.1.20070822 + MergeFunc@Base 6.1.20030421 + MergePCRPrimers@Base 6.1.20110713 + MergeTwoAlignList@Base 6.1.20030421 + MergeValNodeStrings@Base 6.1.20080302 + MimAllelicVariantAsnRead@Base 6.1.20030421 + MimAllelicVariantAsnWrite@Base 6.1.20030421 + MimAllelicVariantFree@Base 6.1.20030421 + MimAllelicVariantNew@Base 6.1.20030421 + MimAsynchronousQuery@Base 6.1.20030421 + MimAuthorAsnRead@Base 6.1.20030421 + MimAuthorAsnWrite@Base 6.1.20030421 + MimAuthorFree@Base 6.1.20030421 + MimAuthorNew@Base 6.1.20030421 + MimCheckQueue@Base 6.1.20030421 + MimCitAsnRead@Base 6.1.20030421 + MimCitAsnWrite@Base 6.1.20030421 + MimCitFree@Base 6.1.20030421 + MimCitNew@Base 6.1.20030421 + MimDateAsnRead@Base 6.1.20030421 + MimDateAsnWrite@Base 6.1.20030421 + MimDateFree@Base 6.1.20030421 + MimDateNew@Base 6.1.20030421 + MimEditItemAsnRead@Base 6.1.20030421 + MimEditItemAsnWrite@Base 6.1.20030421 + MimEditItemFree@Base 6.1.20030421 + MimEditItemNew@Base 6.1.20030421 + MimEntryAsnRead@Base 6.1.20030421 + MimEntryAsnWrite@Base 6.1.20030421 + MimEntryFree@Base 6.1.20030421 + MimEntryNew@Base 6.1.20030421 + MimIndexTermAsnRead@Base 6.1.20030421 + MimIndexTermAsnWrite@Base 6.1.20030421 + MimIndexTermFree@Base 6.1.20030421 + MimIndexTermNew@Base 6.1.20030421 + MimLinkAsnRead@Base 6.1.20030421 + MimLinkAsnWrite@Base 6.1.20030421 + MimLinkFree@Base 6.1.20030421 + MimLinkNew@Base 6.1.20030421 + MimOpenConnection@Base 6.1.20030421 + MimPageAsnRead@Base 6.1.20030421 + MimPageAsnWrite@Base 6.1.20030421 + MimPageFree@Base 6.1.20030421 + MimPageNew@Base 6.1.20030421 + MimReadReply@Base 6.1.20030421 + MimReferenceAsnRead@Base 6.1.20030421 + MimReferenceAsnWrite@Base 6.1.20030421 + MimReferenceFree@Base 6.1.20030421 + MimReferenceNew@Base 6.1.20030421 + MimSetAsnRead@Base 6.1.20030421 + MimSetAsnWrite@Base 6.1.20030421 + MimSetFree@Base 6.1.20030421 + MimSetNew@Base 6.1.20030421 + MimSynchronousQuery@Base 6.1.20030421 + MimTextAsnRead@Base 6.1.20030421 + MimTextAsnWrite@Base 6.1.20030421 + MimTextFree@Base 6.1.20030421 + MimTextNew@Base 6.1.20030421 + MimWaitForReply@Base 6.1.20030421 + MinimizePub@Base 6.1.20030421 + Mla22RequestAsnRead@Base 6.1.20070822 + Mla2AsynchronousQuery@Base 6.1.20070822 + Mla2BackAsnRead@Base 6.1.20070822 + Mla2BackAsnWrite@Base 6.1.20070822 + Mla2BackFree@Base 6.1.20070822 + Mla2CheckQueue@Base 6.1.20070822 + Mla2CorrectCitArt@Base 6.1.20070822 + Mla2CreateCitArtJournalRequest@Base 6.1.20070822 + Mla2CreateCitArtMatchRequest@Base 6.1.20070822 + Mla2CreateCitationtMatchRequest@Base 6.1.20070822 + Mla2CreateJournalTitleRequest@Base 6.1.20070822 + Mla2CreatePubFetchRequest@Base 6.1.20070822 + Mla2ExtractCitMatchReply@Base 6.1.20070822 + Mla2ExtractJournalTitleReply@Base 6.1.20070822 + Mla2ExtractPubFetchReply@Base 6.1.20070822 + Mla2IsEPubOnlyJournal@Base 6.1.20080302 + Mla2OpenConnection@Base 6.1.20070822 + Mla2ReadReply@Base 6.1.20070822 + Mla2RequestAsnWrite@Base 6.1.20070822 + Mla2RequestFree@Base 6.1.20070822 + Mla2SynchronousQuery@Base 6.1.20070822 + Mla2WaitForReply@Base 6.1.20070822 + ModelEvidenceItemAsnRead@Base 6.1.20110713 + ModelEvidenceItemAsnWrite@Base 6.1.20110713 + ModelEvidenceItemFree@Base 6.1.20110713 + ModelEvidenceItemNew@Base 6.1.20110713 + ModelEvidenceSupportAsnRead@Base 6.1.20110713 + ModelEvidenceSupportAsnWrite@Base 6.1.20110713 + ModelEvidenceSupportFree@Base 6.1.20110713 + ModelEvidenceSupportNew@Base 6.1.20110713 + ModernizeGeneFields@Base 6.1.20081116 + ModernizePCRPrimers@Base 6.1.20081116 + ModernizeRNAFields@Base 6.1.20081116 + MolFromMoleculeClassType@Base 6.1.20080302 + MolInfoAsnRead@Base 6.1.20030421 + MolInfoAsnWrite@Base 6.1.20030421 + MolInfoFree@Base 6.1.20030421 + MolInfoNew@Base 6.1.20030421 + MolNameFromMol@Base 6.1.20080302 + MolTypeForGI@Base 6.1.20030421 + MolWtForBsp@Base 6.1.20050828 + MolWtForLoc@Base 6.1.20030421 + MolWtForStr@Base 6.1.20050828 + MolinfoBlockAsnRead@Base 6.1.20081116 + MolinfoBlockAsnWrite@Base 6.1.20081116 + MolinfoBlockFree@Base 6.1.20081116 + MolinfoBlockNew@Base 6.1.20081116 + MolinfoCompletednessPairAsnRead@Base 6.1.20080302 + MolinfoCompletednessPairAsnWrite@Base 6.1.20080302 + MolinfoCompletednessPairFree@Base 6.1.20080302 + MolinfoCompletednessPairNew@Base 6.1.20080302 + MolinfoFieldAsnRead@Base 6.1.20080302 + MolinfoFieldAsnWrite@Base 6.1.20080302 + MolinfoFieldConstraintAsnRead@Base 6.1.20110713 + MolinfoFieldConstraintAsnWrite@Base 6.1.20110713 + MolinfoFieldConstraintFree@Base 6.1.20110713 + MolinfoFieldConstraintNew@Base 6.1.20110713 + MolinfoFieldFree@Base 6.1.20080302 + MolinfoFieldListAsnRead@Base 6.1.20081116 + MolinfoFieldListAsnWrite@Base 6.1.20081116 + MolinfoFieldListFree@Base 6.1.20081116 + MolinfoFieldPairAsnRead@Base 6.1.20080302 + MolinfoFieldPairAsnWrite@Base 6.1.20080302 + MolinfoFieldPairFree@Base 6.1.20080302 + MolinfoMolClassPairAsnRead@Base 6.1.20080302 + MolinfoMolClassPairAsnWrite@Base 6.1.20080302 + MolinfoMolClassPairFree@Base 6.1.20080302 + MolinfoMolClassPairNew@Base 6.1.20080302 + MolinfoMoleculePairAsnRead@Base 6.1.20080302 + MolinfoMoleculePairAsnWrite@Base 6.1.20080302 + MolinfoMoleculePairFree@Base 6.1.20080302 + MolinfoMoleculePairNew@Base 6.1.20080302 + MolinfoStrandPairAsnRead@Base 6.1.20080302 + MolinfoStrandPairAsnWrite@Base 6.1.20080302 + MolinfoStrandPairFree@Base 6.1.20080302 + MolinfoStrandPairNew@Base 6.1.20080302 + MolinfoTechniquePairAsnRead@Base 6.1.20080302 + MolinfoTechniquePairAsnWrite@Base 6.1.20080302 + MolinfoTechniquePairFree@Base 6.1.20080302 + MolinfoTechniquePairNew@Base 6.1.20080302 + MolinfoTopologyPairAsnRead@Base 6.1.20080302 + MolinfoTopologyPairAsnWrite@Base 6.1.20080302 + MolinfoTopologyPairFree@Base 6.1.20080302 + MolinfoTopologyPairNew@Base 6.1.20080302 + MoveSequencesFromSetToWrapper@Base 6.1.20110713 + MrnaTransCheck@Base 6.1.20030421 + MultSeqAlignFromPairSeqAlign@Base 6.1.20030421 + MuskSeqIdWrite@Base 6.1.20030421 + MyFGetLine@Base 6.1.20040505 + NAccnIsDDBJ@Base 6.1.20030421 + NAccnIsEMBL@Base 6.1.20030421 + NAccnIsGENBANK@Base 6.1.20030421 + NCBISubBuild@Base 6.1.20030421 + NCBISubCreate@Base 6.1.20030421 + NCBISubFree@Base 6.1.20030421 + NCBISubValidate@Base 6.1.20030421 + NCBISubWrite@Base 6.1.20030421 + NC_Cleanup@Base 6.1.20030421 + N_atoms@Base 6.1.20030421 + NaI2TableFree@Base 6.1.20030421 + NameStdAsnRead@Base 6.1.20030421 + NameStdAsnWrite@Base 6.1.20030421 + NameStdFree@Base 6.1.20030421 + NameStdMatch@Base 6.1.20050605 + NameStdNew@Base 6.1.20030421 + NcrnaOTHER@Base 6.1.20080302 + NeedlemanWunschQuadraticByLoc@Base 6.1.20030421 + NetTestAsynchronousQuery@Base 6.1.20031028 + NetTestCheckQueue@Base 6.1.20031028 + NetTestReadReply@Base 6.1.20031028 + NewClickableItem@Base 6.1.20070822 + NewClickableItemNoList@Base 6.1.20110713 + NewContLine@Base 6.1.20030421 + NewCreateDefLine@Base 6.1.20081116 + NewCreateDefLineBuf@Base 6.1.20081116 + NewCreateDefLineEx@Base 6.1.20160908 + NewCreateDefLineExEx@Base 6.1.20160908 + NewDescrOnSeqEntry@Base 6.1.20030421 + NewFeatureClause@Base 6.1.20080302 + NewRuleForStructuredComment@Base 6.1.20160908 + Nlm_gbgap@Base 6.1.20030421 + Nlm_gbint@Base 6.1.20030421 + Nlm_gbint_ver@Base 6.1.20030421 + Nlm_gbload_number@Base 6.1.20030421 + Nlm_gbloc@Base 6.1.20030421 + Nlm_gbloc_ver@Base 6.1.20030421 + Nlm_gbparse_better_be_done@Base 6.1.20030421 + Nlm_gbparse_error@Base 6.1.20030421 + Nlm_gbparse_lexfree@Base 6.1.20030421 + Nlm_gbparse_point@Base 6.1.20030421 + Nlm_gbparseint@Base 6.1.20030421 + Nlm_gbparseint_ver@Base 6.1.20030421 + Nlm_gbparselex@Base 6.1.20030421 + Nlm_gbparselex_ver@Base 6.1.20030421 + Nlm_gbpintpnt@Base 6.1.20030421 + Nlm_gbreplace@Base 6.1.20030421 + Nlm_gbreplace_ver@Base 6.1.20030421 + Nlm_install_gbparse_error_handler@Base 6.1.20030421 + Nlm_install_gbparse_range_func@Base 6.1.20030421 + Nlm_non_white@Base 6.1.20030421 + NormalizeDescriptorOrder@Base 6.1.20081116 + NormalizeNullsBetween@Base 6.1.20110713 + NoteStructFree@Base 6.1.20030421 + NoteStructNew@Base 6.1.20030421 + NoteStructReset@Base 6.1.20030421 + NoteText@Base 6.1.20081116 + NoteToCharPtrStack@Base 6.1.20030421 + NumContAsnRead@Base 6.1.20030421 + NumContAsnWrite@Base 6.1.20030421 + NumContFree@Base 6.1.20030421 + NumContNew@Base 6.1.20030421 + NumDefLineModifiers@Base 6.1.20080302 + NumEnumAsnRead@Base 6.1.20030421 + NumEnumAsnWrite@Base 6.1.20030421 + NumEnumFree@Base 6.1.20030421 + NumEnumNew@Base 6.1.20030421 + NumRealAsnRead@Base 6.1.20030421 + NumRealAsnWrite@Base 6.1.20030421 + NumRealFree@Base 6.1.20030421 + NumRealNew@Base 6.1.20030421 + NumberingAsnRead@Base 6.1.20030421 + NumberingAsnWrite@Base 6.1.20030421 + NumberingDefaultGet@Base 6.1.20030421 + NumberingDefaultLoad@Base 6.1.20030421 + NumberingFree@Base 6.1.20030421 + NumberingOffset@Base 6.1.20030421 + NumberingValue@Base 6.1.20030421 + NumberingValueBySeqId@Base 6.1.20030421 + OMGetNextUserKey@Base 6.1.20030421 + OOFDisplayTraceBack1@Base 6.1.20030421 + OOFDisplayTraceBack2@Base 6.1.20030421 + OOFShowBlastAlignment@Base 6.1.20030421 + OOFTranslateDNAInAllFrames@Base 6.1.20030421 + O_atoms@Base 6.1.20030421 + ObjMgrAdd@Base 6.1.20030421 + ObjMgrAddEntityID@Base 6.1.20030421 + ObjMgrAddIndexOnEntityID@Base 6.1.20030421 + ObjMgrAddToClipBoard@Base 6.1.20030421 + ObjMgrAddUserData@Base 6.1.20030421 + ObjMgrAlsoSelect@Base 6.1.20030421 + ObjMgrCheckHold@Base 6.1.20030421 + ObjMgrClearHold@Base 6.1.20030421 + ObjMgrClearOptions@Base 6.1.20030421 + ObjMgrConnect@Base 6.1.20030421 + ObjMgrConnectFunc@Base 6.1.20030421 + ObjMgrDeSelect@Base 6.1.20030421 + ObjMgrDeSelectAll@Base 6.1.20030421 + ObjMgrDelete@Base 6.1.20030421 + ObjMgrDeleteAllInRecord@Base 6.1.20030421 + ObjMgrDeleteIndexOnEntityID@Base 6.1.20030421 + ObjMgrDetach@Base 6.1.20030421 + ObjMgrDetachFunc@Base 6.1.20030421 + ObjMgrDump@Base 6.1.20030421 + ObjMgrFindByData@Base 6.1.20030421 + ObjMgrFindTop@Base 6.1.20030421 + ObjMgrFree@Base 6.1.20030421 + ObjMgrFreeByEntityID@Base 6.1.20030421 + ObjMgrFreeCache@Base 6.1.20030421 + ObjMgrFreeClipBoard@Base 6.1.20030421 + ObjMgrFreeUserData@Base 6.1.20030421 + ObjMgrGenericAsnTextFileRead@Base 6.1.20030421 + ObjMgrGet@Base 6.1.20030421 + ObjMgrGetChoiceForData@Base 6.1.20030421 + ObjMgrGetChoiceForEntityID@Base 6.1.20030421 + ObjMgrGetClipBoard@Base 6.1.20030421 + ObjMgrGetData@Base 6.1.20030421 + ObjMgrGetDataStruct@Base 6.1.20030421 + ObjMgrGetDirtyFlag@Base 6.1.20030421 + ObjMgrGetEntityIDForChoice@Base 6.1.20030421 + ObjMgrGetEntityIDForPointer@Base 6.1.20030421 + ObjMgrGetOptions@Base 6.1.20030421 + ObjMgrGetProcID@Base 6.1.20030421 + ObjMgrGetSelected@Base 6.1.20030421 + ObjMgrGetUserData@Base 6.1.20030421 + ObjMgrIsChild@Base 6.1.20030421 + ObjMgrIsTemp@Base 6.1.20030421 + ObjMgrLock@Base 6.1.20030421 + ObjMgrLookup@Base 6.1.20030421 + ObjMgrLookupIndexOnEntityID@Base 6.1.20030421 + ObjMgrMatch@Base 6.1.20030421 + ObjMgrMemCopy@Base 6.1.20030421 + ObjMgrProcAdd@Base 6.1.20030421 + ObjMgrProcFind@Base 6.1.20030421 + ObjMgrProcFindNext@Base 6.1.20030421 + ObjMgrProcLoad@Base 6.1.20030421 + ObjMgrProcLoadEx@Base 6.1.20030421 + ObjMgrProcLookup@Base 6.1.20030421 + ObjMgrProcOpen@Base 6.1.20030421 + ObjMgrReadLock@Base 6.1.20030421 + ObjMgrReap@Base 6.1.20030421 + ObjMgrReapOne@Base 6.1.20030421 + ObjMgrRecordOmdpByEntityID@Base 6.1.20030421 + ObjMgrRegister@Base 6.1.20030421 + ObjMgrRemoveEntityIDFromRecycle@Base 6.1.20030421 + ObjMgrReportFunc@Base 6.1.20030421 + ObjMgrReportProc@Base 6.1.20061015 + ObjMgrResetAll@Base 6.1.20030421 + ObjMgrSelect@Base 6.1.20030421 + ObjMgrSelectPrint@Base 6.1.20030421 + ObjMgrSendMsg@Base 6.1.20030421 + ObjMgrSendMsgNoFeatureChange@Base 6.1.20100808 + ObjMgrSendMsgOnlyFeatLabelChange@Base 6.1.20100808 + ObjMgrSendProcMsg@Base 6.1.20030421 + ObjMgrSendRowMsg@Base 6.1.20030421 + ObjMgrSetChoice@Base 6.1.20030421 + ObjMgrSetColor@Base 6.1.20030421 + ObjMgrSetDirtyFlag@Base 6.1.20030421 + ObjMgrSetHold@Base 6.1.20030421 + ObjMgrSetOptions@Base 6.1.20030421 + ObjMgrSetTempLoad@Base 6.1.20030421 + ObjMgrStatusString@Base 6.1.20050429 + ObjMgrTestOptions@Base 6.1.20030421 + ObjMgrTypeAdd@Base 6.1.20030421 + ObjMgrTypeFind@Base 6.1.20030421 + ObjMgrTypeFindNext@Base 6.1.20030421 + ObjMgrTypeLoad@Base 6.1.20030421 + ObjMgrTypeLookup@Base 6.1.20030421 + ObjMgrTypeSetLabelFunc@Base 6.1.20030421 + ObjMgrUnlock@Base 6.1.20030421 + ObjMgrWholeEntity@Base 6.1.20030421 + ObjMgrWriteLock@Base 6.1.20030421 + ObjPrtAsnLoad@Base 6.1.20030421 + ObjectIdAsnRead@Base 6.1.20030421 + ObjectIdAsnWrite@Base 6.1.20030421 + ObjectIdCompare@Base 6.1.20081116 + ObjectIdDup@Base 6.1.20030421 + ObjectIdFree@Base 6.1.20030421 + ObjectIdMatch@Base 6.1.20030421 + ObjectIdMatchEx@Base 6.1.20081116 + ObjectIdNew@Base 6.1.20030421 + OffsetFeatureIDXrefs@Base 6.1.20060507 + OffsetFeatureIDs@Base 6.1.20060507 + OkToTaxFix@Base 6.1.20160908 + OncallerToolPseudoDiscrepanciesFix@Base 6.1.20100808 + OneLetterCode@Base 6.1.20030421 + OpenLog@Base 6.1.20090719 + OpenMMDBAPI@Base 6.1.20030421 + OrderFeatProc@Base 6.1.20030421 + OrgModAsnRead@Base 6.1.20030421 + OrgModAsnWrite@Base 6.1.20030421 + OrgModFree@Base 6.1.20030421 + OrgModNew@Base 6.1.20030421 + OrgModSetAsnRead@Base 6.1.20030421 + OrgModSetAsnWrite@Base 6.1.20030421 + OrgModSetCompare@Base 6.1.20081116 + OrgModSetFree@Base 6.1.20030421 + OrgModSetMatch@Base 6.1.20050605 + OrgModSetMatchExceptOldName@Base 6.1.20120620 + OrgModText@Base 6.1.20081116 + OrgNameAsnRead@Base 6.1.20030421 + OrgNameAsnWrite@Base 6.1.20030421 + OrgNameCompare@Base 6.1.20081116 + OrgNameFree@Base 6.1.20030421 + OrgNameMatch@Base 6.1.20050605 + OrgNameMatchExceptOldName@Base 6.1.20120620 + OrgNameNew@Base 6.1.20030421 + OrgNameSetAsnRead@Base 6.1.20030421 + OrgNameSetAsnWrite@Base 6.1.20030421 + OrgNameSetFree@Base 6.1.20030421 + OrgRefAsnRead@Base 6.1.20030421 + OrgRefAsnWrite@Base 6.1.20030421 + OrgRefCompare@Base 6.1.20081116 + OrgRefFree@Base 6.1.20030421 + OrgRefMatch@Base 6.1.20050605 + OrgRefNew@Base 6.1.20030421 + OrganizePubList@Base 6.1.20030421 + OrganizeSeqFeat@Base 6.1.20030421 + OriginFromSrcOrig@Base 6.1.20080302 + OriginNameFromOrigin@Base 6.1.20080302 + OtherSourceAsnRead@Base 6.1.20050429 + OtherSourceAsnWrite@Base 6.1.20050429 + OtherSourceFree@Base 6.1.20050429 + OtherSourceNew@Base 6.1.20050429 + PCRPrimerAsnRead@Base 6.1.20081116 + PCRPrimerAsnWrite@Base 6.1.20081116 + PCRPrimerFree@Base 6.1.20081116 + PCRPrimerNew@Base 6.1.20081116 + PCRPrimerSetAsnRead@Base 6.1.20081116 + PCRPrimerSetAsnWrite@Base 6.1.20081116 + PCRPrimerSetFree@Base 6.1.20081116 + PCRReactionAsnRead@Base 6.1.20081116 + PCRReactionAsnWrite@Base 6.1.20081116 + PCRReactionFree@Base 6.1.20081116 + PCRReactionIsEmpty@Base 6.1.20110713 + PCRReactionNew@Base 6.1.20081116 + PCRReactionSetAsnRead@Base 6.1.20081116 + PCRReactionSetAsnWrite@Base 6.1.20081116 + PCRReactionSetFree@Base 6.1.20081116 + PDBSeqIdAsnRead@Base 6.1.20030421 + PDBSeqIdAsnWrite@Base 6.1.20030421 + PDBSeqIdFree@Base 6.1.20030421 + PDBSeqIdNew@Base 6.1.20030421 + PackSegAsnRead@Base 6.1.20030421 + PackSegAsnWrite@Base 6.1.20030421 + PackSegFree@Base 6.1.20030421 + PackSegGapList@Base 6.1.20030421 + PackSegNew@Base 6.1.20030421 + PackSegStats@Base 6.1.20030421 + PackSeqIntAsnRead@Base 6.1.20030421 + PackSeqIntAsnWrite@Base 6.1.20030421 + PackSeqPntAsnRead@Base 6.1.20030421 + PackSeqPntAsnWrite@Base 6.1.20030421 + PackSeqPntCheck@Base 6.1.20030421 + PackSeqPntDelete@Base 6.1.20030421 + PackSeqPntFree@Base 6.1.20030421 + PackSeqPntGet@Base 6.1.20030421 + PackSeqPntInsert@Base 6.1.20030421 + PackSeqPntNew@Base 6.1.20030421 + PackSeqPntNum@Base 6.1.20030421 + PackSeqPntPut@Base 6.1.20030421 + PairSeqAlign2MultiSeqAlign@Base 6.1.20030421 + PairwiseSeqAlignHasLinkout@Base 6.1.20030421 + ParFlat_AA_array@Base 6.1.20030421 + ParFlat_ExpString@Base 6.1.20030421 + ParFlat_IntOrString@Base 6.1.20030421 + ParFlat_LRBString@Base 6.1.20030421 + ParFlat_RptString@Base 6.1.20030421 + ParseActionAsnRead@Base 6.1.20080302 + ParseActionAsnWrite@Base 6.1.20080302 + ParseActionFree@Base 6.1.20080302 + ParseActionNew@Base 6.1.20080302 + ParseAnticodon@Base 6.1.20040505 + ParseCodeBreak@Base 6.1.20030421 + ParseDegenerateCodon@Base 6.1.20030421 + ParseDestAsnRead@Base 6.1.20080302 + ParseDestAsnWrite@Base 6.1.20080302 + ParseDestFree@Base 6.1.20080302 + ParseDstOrgAsnRead@Base 6.1.20080302 + ParseDstOrgAsnWrite@Base 6.1.20080302 + ParseDstOrgFree@Base 6.1.20080302 + ParseDstOrgNew@Base 6.1.20080302 + ParseExtractorResultsTableToFeatures@Base 6.1.20110713 + ParseGoTermsFromFields@Base 6.1.20080302 + ParseLatLon@Base 6.1.20070822 + ParseMedline@Base 6.1.20030421 + ParsePCRSet@Base 6.1.20070822 + ParsePCRStrings@Base 6.1.20070822 + ParsePubFromEndnote@Base 6.1.20120620 + ParseRNAFeatListTableToFeatures@Base 6.1.20160908 + ParseSimpleSeqLoc@Base 6.1.20090719 + ParseSrcAsnRead@Base 6.1.20080302 + ParseSrcAsnWrite@Base 6.1.20080302 + ParseSrcFree@Base 6.1.20080302 + ParseSrcGeneralIdAsnRead@Base 6.1.20110713 + ParseSrcGeneralIdAsnWrite@Base 6.1.20110713 + ParseSrcGeneralIdFree@Base 6.1.20110713 + ParseSrcOrgAsnRead@Base 6.1.20080302 + ParseSrcOrgAsnWrite@Base 6.1.20080302 + ParseSrcOrgChoiceAsnRead@Base 6.1.20080302 + ParseSrcOrgChoiceAsnWrite@Base 6.1.20080302 + ParseSrcOrgChoiceFree@Base 6.1.20080302 + ParseSrcOrgFree@Base 6.1.20080302 + ParseSrcOrgNew@Base 6.1.20080302 + ParseStringIntoSeqHist@Base 6.1.20040204 + ParseStringIntoStructuredComment@Base 6.1.20060507 + ParseStructuredVoucher@Base 6.1.20081116 + ParseTRnaString@Base 6.1.20030421 + ParseTaxNameToQuals@Base 6.1.20100808 + ParseTitleIntoBioSource@Base 6.1.20030421 + ParseTitleIntoBioseq@Base 6.1.20030421 + ParseTitleIntoDBLinkBioProject@Base 6.1.20120620 + ParseTitleIntoDBLinkBioSample@Base 6.1.20120620 + ParseTitleIntoDBLinkSeqReadArch@Base 6.1.20120620 + ParseTitleIntoGenBank@Base 6.1.20030421 + ParseTitleIntoGeneRef@Base 6.1.20030421 + ParseTitleIntoGenomeProjectsDB@Base 6.1.20070822 + ParseTitleIntoMolInfo@Base 6.1.20030421 + ParseTitleIntoProtRef@Base 6.1.20030421 + ParseTitleIntoSeqHist@Base 6.1.20030421 + ParseTitleIntoSubmitBlock@Base 6.1.20100808 + ParseTitleIntoTpaAssembly@Base 6.1.20030421 + Partial3SetActionAsnRead@Base 6.1.20080302 + Partial3SetActionAsnWrite@Base 6.1.20080302 + Partial3SetActionFree@Base 6.1.20080302 + Partial3SetActionNew@Base 6.1.20080302 + Partial5SetActionAsnRead@Base 6.1.20080302 + Partial5SetActionAsnWrite@Base 6.1.20080302 + Partial5SetActionFree@Base 6.1.20080302 + Partial5SetActionNew@Base 6.1.20080302 + PartialBothSetActionAsnRead@Base 6.1.20110713 + PartialBothSetActionAsnWrite@Base 6.1.20110713 + PartialBothSetActionFree@Base 6.1.20110713 + PartialBothSetActionNew@Base 6.1.20110713 + PassBarcodeTests@Base 6.1.20070822 + PatPriorityNew@Base 6.1.20030421 + PatPrioritySetAsnRead@Base 6.1.20030421 + PatPrioritySetAsnWrite@Base 6.1.20030421 + PatPrioritySetFree@Base 6.1.20030421 + PatchBadSequence@Base 6.1.20030421 + PatentSeqIdAsnRead@Base 6.1.20030421 + PatentSeqIdAsnWrite@Base 6.1.20030421 + PatentSeqIdFree@Base 6.1.20030421 + PatentSeqIdNew@Base 6.1.20030421 + PdbBlockAsnRead@Base 6.1.20030421 + PdbBlockAsnWrite@Base 6.1.20030421 + PdbBlockFree@Base 6.1.20030421 + PdbBlockNew@Base 6.1.20030421 + PercentNInBioseq@Base 6.1.20100808 + PercentNInBioseqInterval@Base 6.1.20120620 + PersistentTransTableByCdRegion@Base 6.1.20030421 + PersistentTransTableByGenCode@Base 6.1.20030421 + PersonIdAsnRead@Base 6.1.20030421 + PersonIdAsnWrite@Base 6.1.20030421 + PersonIdFree@Base 6.1.20030421 + PersonIdLabel@Base 6.1.20030421 + PersonIdMatch@Base 6.1.20050605 + PersonIdNew@Base 6.1.20030421 + PersonIdPrint@Base 6.1.20030421 + PhenotypeAsnRead@Base 6.1.20100808 + PhenotypeAsnWrite@Base 6.1.20100808 + PhenotypeFree@Base 6.1.20100808 + PhenotypeNew@Base 6.1.20100808 + PhrapGraphForContig@Base 6.1.20030421 + PhraseListAsnRead@Base 6.1.20160908 + PhraseListAsnWrite@Base 6.1.20160908 + PhraseListFree@Base 6.1.20160908 + PirBlockAsnRead@Base 6.1.20030421 + PirBlockAsnWrite@Base 6.1.20030421 + PirBlockFree@Base 6.1.20030421 + PirBlockNew@Base 6.1.20030421 + PopSetAutoDefRetro@Base 6.1.20100808 + PopulateGapLocQuals@Base 6.1.20160908 + PopulationDataAsnRead@Base 6.1.20100808 + PopulationDataAsnWrite@Base 6.1.20100808 + PopulationDataFree@Base 6.1.20100808 + PopulationDataNew@Base 6.1.20100808 + PostARefErrMessage@Base 6.1.20030421 + PowerBLASTASN1Detected@Base 6.1.20030421 + PrepareSequenceListForSegregateByBioseqList@Base 6.1.20120620 + PrepareSequenceListForSegregateByNumberOfSets@Base 6.1.20100808 + PrepareSequenceListForSegregateByNumberPerSet@Base 6.1.20100808 + PrepareSourceFeatQuals@Base 6.1.20030421 + PreprocessMacroForRepeatedUse@Base 6.1.20120620 + PrfBlockAsnRead@Base 6.1.20030421 + PrfBlockAsnWrite@Base 6.1.20030421 + PrfBlockFree@Base 6.1.20030421 + PrfBlockNew@Base 6.1.20030421 + PrintAAFeatByNumber@Base 6.1.20030421 + PrintACEFormatErrorXML@Base 6.1.20081116 + PrintACEFormatErrorXMLEnd@Base 6.1.20081116 + PrintACEFormatErrorXMLStart@Base 6.1.20081116 + PrintAccessLine@Base 6.1.20030421 + PrintAlignForText@Base 6.1.20030421 + PrintBaseCount@Base 6.1.20030421 + PrintCharFunc@Base 6.1.20030421 + PrintComment@Base 6.1.20030421 + PrintCommentByNumber@Base 6.1.20030421 + PrintDBSourceLine@Base 6.1.20030421 + PrintDate@Base 6.1.20030421 + PrintDateLines@Base 6.1.20030421 + PrintDefLinesExtra@Base 6.1.20030421 + PrintDefLinesFromAnnot@Base 6.1.20030421 + PrintDefLinesFromSeqAlign@Base 6.1.20030421 + PrintDefLinesFromSeqAlignEx2@Base 6.1.20030421 + PrintDefLinesFromSeqAlignEx@Base 6.1.20030421 + PrintDefLinesFromSeqAlignWithPath@Base 6.1.20040204 + PrintDefinitionLine@Base 6.1.20030421 + PrintDiscrepancyTestList@Base 6.1.20081116 + PrintEPLocusLine@Base 6.1.20030421 + PrintEPSequence@Base 6.1.20030421 + PrintFTCodeBreak@Base 6.1.20100808 + PrintFTCodeBreakEx@Base 6.1.20120620 + PrintFeatHeader@Base 6.1.20030421 + PrintFirstComment@Base 6.1.20030421 + PrintFormAsnRead@Base 6.1.20030421 + PrintFormAsnWrite@Base 6.1.20030421 + PrintFormBlockAsnRead@Base 6.1.20030421 + PrintFormBlockAsnWrite@Base 6.1.20030421 + PrintFormBlockFree@Base 6.1.20030421 + PrintFormBlockNew@Base 6.1.20030421 + PrintFormBooleanAsnRead@Base 6.1.20030421 + PrintFormBooleanAsnWrite@Base 6.1.20030421 + PrintFormBooleanFree@Base 6.1.20030421 + PrintFormBooleanNew@Base 6.1.20030421 + PrintFormEnumAsnRead@Base 6.1.20030421 + PrintFormEnumAsnWrite@Base 6.1.20030421 + PrintFormEnumFree@Base 6.1.20030421 + PrintFormEnumNew@Base 6.1.20030421 + PrintFormFree@Base 6.1.20030421 + PrintFormTextAsnRead@Base 6.1.20030421 + PrintFormTextAsnWrite@Base 6.1.20030421 + PrintFormTextFree@Base 6.1.20030421 + PrintFormTextNew@Base 6.1.20030421 + PrintFormatAsnRead@Base 6.1.20030421 + PrintFormatAsnWrite@Base 6.1.20030421 + PrintFormatFree@Base 6.1.20030421 + PrintFormatListBuild@Base 6.1.20030421 + PrintFormatListFind@Base 6.1.20030421 + PrintFormatListFree@Base 6.1.20030421 + PrintFormatListFreeAll@Base 6.1.20030421 + PrintFormatListGet@Base 6.1.20030421 + PrintFormatListGetMaxKey@Base 6.1.20030421 + PrintFormatListNew@Base 6.1.20030421 + PrintFormatNew@Base 6.1.20030421 + PrintFormatTraverse@Base 6.1.20030421 + PrintFrameShiftReportList@Base 6.1.20120620 + PrintFtableIntervals@Base 6.1.20040616 + PrintFtableLocAndQuals@Base 6.1.20040616 + PrintGBOrganismLine@Base 6.1.20030421 + PrintGBSourceLine@Base 6.1.20030421 + PrintGenome@Base 6.1.20030421 + PrintImpFeat@Base 6.1.20030421 + PrintImpFeatEx@Base 6.1.20030421 + PrintKeywordLine@Base 6.1.20030421 + PrintLocusLine@Base 6.1.20030421 + PrintNAFeatByNumber@Base 6.1.20030421 + PrintNCBI_GI@Base 6.1.20030421 + PrintNID@Base 6.1.20030421 + PrintOrganismLine@Base 6.1.20030421 + PrintOriginLine@Base 6.1.20030421 + PrintPubsByNumber@Base 6.1.20030421 + PrintQBlastQueue@Base 6.1.20030421 + PrintQualityScores@Base 6.1.20030421 + PrintQualityScoresForContig@Base 6.1.20030421 + PrintQualityScoresToBuffer@Base 6.1.20030421 + PrintSPBlock@Base 6.1.20030421 + PrintSegmentLine@Base 6.1.20030421 + PrintSeqAlignCallback@Base 6.1.20030421 + PrintSeqBlk@Base 6.1.20030421 + PrintSeqBlkEx@Base 6.1.20030421 + PrintSequence@Base 6.1.20030421 + PrintSourceFeat@Base 6.1.20030421 + PrintStackAddItem@Base 6.1.20030421 + PrintStackBuild@Base 6.1.20030421 + PrintStackDump@Base 6.1.20030421 + PrintStackFree@Base 6.1.20030421 + PrintStackGetSize@Base 6.1.20030421 + PrintStackItemGet@Base 6.1.20030421 + PrintStackItemNew@Base 6.1.20030421 + PrintStackPrint@Base 6.1.20030421 + PrintStackSort@Base 6.1.20030421 + PrintStringConvert@Base 6.1.20030421 + PrintSuspectRuleMatches@Base 6.1.20110713 + PrintTaxonomy@Base 6.1.20030421 + PrintTemplateAsnRead@Base 6.1.20030421 + PrintTemplateAsnWrite@Base 6.1.20030421 + PrintTemplateFind@Base 6.1.20030421 + PrintTemplateFree@Base 6.1.20030421 + PrintTemplateFreeAll@Base 6.1.20030421 + PrintTemplateInMem@Base 6.1.20030421 + PrintTemplateNew@Base 6.1.20030421 + PrintTemplateSetAsnRead@Base 6.1.20030421 + PrintTemplateSetLoad@Base 6.1.20030421 + PrintTemplateSetLoadEx@Base 6.1.20040204 + PrintTerminator@Base 6.1.20030421 + PrintVecScreenQueue@Base 6.1.20030421 + PrintVersionLine@Base 6.1.20030421 + PrintXX@Base 6.1.20030421 + PrintXrefLine@Base 6.1.20030421 + ProcessLargeACEFileForContigFastaAndQualScores@Base 6.1.20090301 + ProcessTextAlignNode2@Base 6.1.20030421 + ProcessTextAlignNode@Base 6.1.20030421 + ProductContainsTerm@Base 6.1.20110713 + ProductPosAsnRead@Base 6.1.20061015 + ProductPosAsnWrite@Base 6.1.20061015 + ProductPosFree@Base 6.1.20061015 + ProductUpdateTableFree@Base 6.1.20110713 + ProductsMatchForRefSeq@Base 6.1.20110713 + ProgramIdAsnRead@Base 6.1.20110713 + ProgramIdAsnWrite@Base 6.1.20110713 + ProgramIdFree@Base 6.1.20110713 + ProgramIdNew@Base 6.1.20110713 + ProjdescAsnRead@Base 6.1.20030421 + ProjdescAsnWrite@Base 6.1.20030421 + ProjdescFree@Base 6.1.20030421 + ProjectAsnRead@Base 6.1.20030421 + ProjectAsnWrite@Base 6.1.20030421 + ProjectDescrAsnRead@Base 6.1.20030421 + ProjectDescrAsnWrite@Base 6.1.20030421 + ProjectDescrFree@Base 6.1.20030421 + ProjectDescrNew@Base 6.1.20030421 + ProjectFree@Base 6.1.20030421 + ProjectItemAsnRead@Base 6.1.20030421 + ProjectItemAsnWrite@Base 6.1.20030421 + ProjectItemFree@Base 6.1.20030421 + ProjectNew@Base 6.1.20030421 + PromoteAllToBestID@Base 6.1.20120620 + PromoteAllToWorstID@Base 6.1.20120620 + PromoteCommonTitlesToSet@Base 6.1.20100808 + PromoteXrefs@Base 6.1.20030421 + PromoteXrefsEx@Base 6.1.20030421 + PromoteXrefsExEx@Base 6.1.20041020 + PropagateDblinkDescriptors@Base 6.1.20120620 + PropagateFeatureByApply@Base 6.1.20030421 + PropagateFeatureBySeqLock@Base 6.1.20030421 + PropagateMissingOldNames@Base 6.1.20120620 + PropagateSomeDescriptors@Base 6.1.20120620 + PropagateStrandInfo@Base 6.1.20030421 + PropagateThisDescriptor@Base 6.1.20160908 + ProtPosAsnRead@Base 6.1.20061015 + ProtPosAsnWrite@Base 6.1.20061015 + ProtPosFree@Base 6.1.20061015 + ProtPosNew@Base 6.1.20061015 + ProtRefAsnRead@Base 6.1.20030421 + ProtRefAsnWrite@Base 6.1.20030421 + ProtRefDup@Base 6.1.20030421 + ProtRefFree@Base 6.1.20030421 + ProtRefMatch@Base 6.1.20081116 + ProtRefNew@Base 6.1.20030421 + ProtSearchAddProteinPattern@Base 6.1.20061015 + ProtSearchFree@Base 6.1.20061015 + ProtSearchNew@Base 6.1.20061015 + ProtSearchProcessBioseq@Base 6.1.20061015 + ProtSearchProcessCharacter@Base 6.1.20061015 + ProtSearchReset@Base 6.1.20061015 + ProteinFromCdRegion@Base 6.1.20030421 + ProteinFromCdRegionEx@Base 6.1.20030421 + ProteinFromCdRegionExEx@Base 6.1.20040505 + ProteinFromCdRegionExWithTrailingCodonHandling@Base 6.1.20040204 + PssmAsnRead@Base 6.1.20070822 + PssmAsnWrite@Base 6.1.20070822 + PssmFinalDataAsnRead@Base 6.1.20070822 + PssmFinalDataAsnWrite@Base 6.1.20070822 + PssmFinalDataFree@Base 6.1.20070822 + PssmFinalDataNew@Base 6.1.20070822 + PssmFree@Base 6.1.20070822 + PssmIntermediateDataAsnRead@Base 6.1.20070822 + PssmIntermediateDataAsnWrite@Base 6.1.20070822 + PssmIntermediateDataFree@Base 6.1.20070822 + PssmIntermediateDataNew@Base 6.1.20070822 + PssmNew@Base 6.1.20070822 + PssmParametersAsnRead@Base 6.1.20070822 + PssmParametersAsnWrite@Base 6.1.20070822 + PssmParametersFree@Base 6.1.20070822 + PssmParametersNew@Base 6.1.20070822 + PssmWithParametersAsnRead@Base 6.1.20070822 + PssmWithParametersAsnWrite@Base 6.1.20070822 + PssmWithParametersFree@Base 6.1.20070822 + PssmWithParametersNew@Base 6.1.20070822 + PubAsnLoad@Base 6.1.20030421 + PubAsnRead@Base 6.1.20030421 + PubAsnWrite@Base 6.1.20030421 + PubEquivAsnRead@Base 6.1.20030421 + PubEquivAsnWrite@Base 6.1.20030421 + PubEquivFree@Base 6.1.20030421 + PubEquivMatch@Base 6.1.20030421 + PubFieldConstraintAsnRead@Base 6.1.20081116 + PubFieldConstraintAsnWrite@Base 6.1.20081116 + PubFieldConstraintFree@Base 6.1.20081116 + PubFieldConstraintNew@Base 6.1.20081116 + PubFieldSpecialConstraintAsnRead@Base 6.1.20100808 + PubFieldSpecialConstraintAsnWrite@Base 6.1.20100808 + PubFieldSpecialConstraintFree@Base 6.1.20100808 + PubFieldSpecialConstraintNew@Base 6.1.20100808 + PubFieldSpecialConstraintTypeAsnRead@Base 6.1.20100808 + PubFieldSpecialConstraintTypeAsnWrite@Base 6.1.20100808 + PubFieldSpecialConstraintTypeFree@Base 6.1.20100808 + PubFree@Base 6.1.20030421 + PubIsEffectivelyEmpty@Base 6.1.20080302 + PubLabel@Base 6.1.20030421 + PubLabelMatch@Base 6.1.20030421 + PubLabelUnique@Base 6.1.20030421 + PubMatch@Base 6.1.20030421 + PubMedAsynchronousQuery@Base 6.1.20030421 + PubMedCheckQueue@Base 6.1.20030421 + PubMedFetchDisable@Base 6.1.20031028 + PubMedFetchEnable@Base 6.1.20031028 + PubMedFetchOpenConnection@Base 6.1.20030421 + PubMedReadReply@Base 6.1.20030421 + PubMedSetFetchFunc@Base 6.1.20031028 + PubMedSynchronousQuery@Base 6.1.20030421 + PubMedWaitForReply@Base 6.1.20030421 + PubSeqAsynchronousQuery@Base 6.1.20030421 + PubSeqCheckQueue@Base 6.1.20030421 + PubSeqFetchDisable@Base 6.1.20030421 + PubSeqFetchEnable@Base 6.1.20030421 + PubSeqFetchEnableEx@Base 6.1.20061015 + PubSeqFetchOpenConnection@Base 6.1.20030421 + PubSeqFetchOpenConnectionString@Base 6.1.20120620 + PubSeqFetchSRAOpenConnection@Base 6.1.20090719 + PubSeqFetchTraceOpenConnection@Base 6.1.20080302 + PubSeqReadReply@Base 6.1.20030421 + PubSeqSynchronousQuery@Base 6.1.20030421 + PubSeqSynchronousQueryEx@Base 6.1.20120620 + PubSeqSynchronousQueryId@Base 6.1.20120620 + PubSeqSynchronousQuerySRA@Base 6.1.20090719 + PubSeqSynchronousQueryString@Base 6.1.20120620 + PubSeqSynchronousQueryTI@Base 6.1.20080302 + PubSeqWaitForReply@Base 6.1.20030421 + PubSerialNumberListFree@Base 6.1.20090301 + PubSetAsnRead@Base 6.1.20030421 + PubSetAsnWrite@Base 6.1.20030421 + PubSetFree@Base 6.1.20030421 + PubSetLabel@Base 6.1.20030421 + PubStatusDateAsnRead@Base 6.1.20030421 + PubStatusDateAsnWrite@Base 6.1.20030421 + PubStatusDateFree@Base 6.1.20030421 + PubStatusDateNew@Base 6.1.20030421 + PubdescAsnRead@Base 6.1.20030421 + PubdescAsnWrite@Base 6.1.20030421 + PubdescContentMatch@Base 6.1.20060301 + PubdescFree@Base 6.1.20030421 + PubdescNew@Base 6.1.20030421 + PublicationConstraintAsnRead@Base 6.1.20081116 + PublicationConstraintAsnWrite@Base 6.1.20081116 + PublicationConstraintFree@Base 6.1.20081116 + PublicationConstraintNew@Base 6.1.20081116 + PubmedEntryAsnRead@Base 6.1.20030421 + PubmedEntryAsnWrite@Base 6.1.20030421 + PubmedEntryFree@Base 6.1.20030421 + PubmedEntryNew@Base 6.1.20030421 + PubmedEntryToAbsFile@Base 6.1.20031028 + PubmedEntryToDataFile@Base 6.1.20031028 + PubmedEntryToDocFile@Base 6.1.20031028 + PubmedUrlAsnRead@Base 6.1.20030421 + PubmedUrlAsnWrite@Base 6.1.20030421 + PubmedUrlFree@Base 6.1.20030421 + PubmedUrlNew@Base 6.1.20030421 + QBBioseqToFasta@Base 6.1.20030421 + QBlastAsynchronousRequest@Base 6.1.20030421 + QBlastCheckQueue@Base 6.1.20030421 + QBlastCheckRequest@Base 6.1.20030421 + QBlastCloseQueue@Base 6.1.20030421 + QBlastOpenConnection@Base 6.1.20030421 + QBlastWaitForReply@Base 6.1.20030421 + QualLocCreate@Base 6.1.20030421 + QualLocWrite@Base 6.1.20030421 + QuantityConstraintAsnRead@Base 6.1.20100808 + QuantityConstraintAsnWrite@Base 6.1.20100808 + QuantityConstraintFree@Base 6.1.20100808 + RDBTaxNamesClone@Base 6.1.20030421 + RDBTaxNamesFree@Base 6.1.20030421 + RID_glb@Base 6.1.20030421 + RNAGenAsnRead@Base 6.1.20081116 + RNAGenAsnWrite@Base 6.1.20081116 + RNAGenFree@Base 6.1.20081116 + RNAGenNew@Base 6.1.20081116 + RNAQualAsnRead@Base 6.1.20081116 + RNAQualAsnWrite@Base 6.1.20081116 + RNAQualFree@Base 6.1.20081116 + RNAQualNew@Base 6.1.20081116 + RNAQualSetAsnRead@Base 6.1.20081116 + RNAQualSetAsnWrite@Base 6.1.20081116 + RNAQualSetFree@Base 6.1.20081116 + ReMapIntFuzz@Base 6.1.20030421 + ReadACEFile@Base 6.1.20081116 + ReadAlignFileLine@Base 6.1.20030421 + ReadAlignmentFile2@Base 6.1.20120620 + ReadAlignmentFile@Base 6.1.20040204 + ReadAlignmentFileEx2@Base 6.1.20120620 + ReadAlignmentFileEx@Base 6.1.20051206 + ReadAsnFastaOrFlatFile@Base 6.1.20030421 + ReadAsnFastaOrFlatFileEx@Base 6.1.20051206 + ReadAssemblyFile@Base 6.1.20081116 + ReadBufferFromSap@Base 6.1.20030421 + ReadBufferFromSep@Base 6.1.20030421 + ReadCodingRegionBases@Base 6.1.20030421 + ReadCompletenessFromString@Base 6.1.20060301 + ReadContigFromString@Base 6.1.20081116 + ReadContigList@Base 6.1.20030421 + ReadContigListEx@Base 6.1.20030421 + ReadDeltaFasta@Base 6.1.20050429 + ReadDeltaFastaEx@Base 6.1.20051206 + ReadDeltaFastaExEx@Base 6.1.20160908 + ReadDeltaFastaWithEmptyDefline@Base 6.1.20050828 + ReadDiscrepancyConfig@Base 6.1.20070822 + ReadDiscrepancyConfigEx@Base 6.1.20081116 + ReadElandStandaloneFile@Base 6.1.20081116 + ReadFastaOnly@Base 6.1.20051206 + ReadFeatureTableFile@Base 6.1.20070822 + ReadFilteredAsn@Base 6.1.20100808 + ReadFromElandMostCompressed@Base 6.1.20081116 + ReadFromElandSanger@Base 6.1.20081116 + ReadFromElandStandalone@Base 6.1.20081116 + ReadFromMAQString@Base 6.1.20081116 + ReadMAQFile@Base 6.1.20081116 + ReadNameListFromString@Base 6.1.20160908 + ReadNumberFromToken@Base 6.1.20081116 + ReadOneColumnList@Base 6.1.20100808 + ReadPhrapFile@Base 6.1.20030421 + ReadPhrapQuality@Base 6.1.20030421 + ReadPhrapQualityFC@Base 6.1.20050828 + ReadProductUpdateTable@Base 6.1.20110713 + ReadSeqIdPairListFromFile@Base 6.1.20081116 + ReadSequenceAsnFile@Base 6.1.20090719 + ReadTabTableFromFile@Base 6.1.20080302 + ReadTechFromString@Base 6.1.20050828 + RearrangeSegments@Base 6.1.20030421 + ReassignFeatureIDs@Base 6.1.20060507 + RebuildDNA_4na@Base 6.1.20030421 + RecalculateConsensusSequences@Base 6.1.20081116 + RecordInSeqIdGiCache@Base 6.1.20030421 + ReformatAssemblyDate@Base 6.1.20160908 + ReformatDateStringEx@Base 6.1.20081116 + ReformatDateWithMonthNames@Base 6.1.20110713 + RefreshGeneData@Base 6.1.20030421 + RegenerateAutoDef@Base 6.1.20160908 + RegionTypeAsnRead@Base 6.1.20081116 + RegionTypeAsnWrite@Base 6.1.20081116 + RegionTypeFree@Base 6.1.20081116 + RegionTypeNew@Base 6.1.20081116 + RegulatoryOTHER@Base 6.1.20160908 + ReintegrateFilteredAsn@Base 6.1.20100808 + RelaxedSeqIdIn@Base 6.1.20120620 + RemoveActionAsnRead@Base 6.1.20080302 + RemoveActionAsnWrite@Base 6.1.20080302 + RemoveActionFree@Base 6.1.20080302 + RemoveActionNew@Base 6.1.20080302 + RemoveAlignmentsWithElementsOfSet@Base 6.1.20160908 + RemoveAlignmentsWithSequence@Base 6.1.20120620 + RemoveAllNcbiCleanupUserObjects@Base 6.1.20090719 + RemoveAllSeqAnnotCleanupUserObjs@Base 6.1.20100808 + RemoveAllStructuredCommentKeywords@Base 6.1.20160908 + RemoveAllVersionLocusGIFromID@Base 6.1.20120620 + RemoveAutodefObjects@Base 6.1.20160908 + RemoveAutodefObjectsForDesc@Base 6.1.20160908 + RemoveBadCodonRecognizedInSeqEntry@Base 6.1.20110713 + RemoveBadInstitutionCollection@Base 6.1.20160908 + RemoveBadInstitutionCountry@Base 6.1.20160908 + RemoveBarcodeKeywordFromBioseq@Base 6.1.20110713 + RemoveBarcodeKeywords@Base 6.1.20070822 + RemoveBarcodeKeywordsFromObjectList@Base 6.1.20100808 + RemoveBarcodeTech@Base 6.1.20090719 + RemoveBarcodeTechFromBioseq@Base 6.1.20110713 + RemoveConsortiumFromPub@Base 6.1.20090719 + RemoveConsortiums@Base 6.1.20090719 + RemoveCultureNotes@Base 6.1.20110713 + RemoveDBxrefForBioSource@Base 6.1.20100808 + RemoveDescriptorActionAsnRead@Base 6.1.20090301 + RemoveDescriptorActionAsnWrite@Base 6.1.20090301 + RemoveDescriptorActionFree@Base 6.1.20090301 + RemoveDescriptorActionNew@Base 6.1.20090301 + RemoveDuplicateFeatureActionAsnRead@Base 6.1.20110713 + RemoveDuplicateFeatureActionAsnWrite@Base 6.1.20110713 + RemoveDuplicateFeatureActionFree@Base 6.1.20110713 + RemoveDuplicateFeatureActionNew@Base 6.1.20110713 + RemoveDuplicateFeaturesInList@Base 6.1.20110713 + RemoveDuplicateFeaturesInSeqEntry@Base 6.1.20110713 + RemoveDuplicateItems@Base 6.1.20081116 + RemoveDuplicateNestedSetsForEntityID@Base 6.1.20100808 + RemoveDuplicateNestedSetsForEntityIDNoUpdate@Base 6.1.20120620 + RemoveDuplicateStructuredCommentsInSeqEntry@Base 6.1.20160908 + RemoveEmptyStructuredComments@Base 6.1.20160908 + RemoveExonsOnMrna@Base 6.1.20100808 + RemoveFeatureActionAsnRead@Base 6.1.20080302 + RemoveFeatureActionAsnWrite@Base 6.1.20080302 + RemoveFeatureActionFree@Base 6.1.20080302 + RemoveFeatureActionNew@Base 6.1.20080302 + RemoveFeatureLink@Base 6.1.20110713 + RemoveGBQualMatch@Base 6.1.20120620 + RemoveGapCharsFromSequenceString@Base 6.1.20081116 + RemoveMRnaTitles@Base 6.1.20110713 + RemoveNcbiAutofixUserObjects@Base 6.1.20110713 + RemoveNucProtSetTitles@Base 6.1.20080302 + RemoveOneSequenceFromAlignment@Base 6.1.20120620 + RemoveOutsideActionAsnRead@Base 6.1.20120620 + RemoveOutsideActionAsnWrite@Base 6.1.20120620 + RemoveOutsideActionFree@Base 6.1.20120620 + RemoveOutsideActionNew@Base 6.1.20120620 + RemovePopsetTitles@Base 6.1.20100808 + RemoveProteinTitles@Base 6.1.20100808 + RemoveQualFromFeature@Base 6.1.20100808 + RemoveQualityScores@Base 6.1.20120620 + RemoveQuotesFromTabTable@Base 6.1.20081116 + RemoveRNAProductString@Base 6.1.20100808 + RemoveRNAQualFromFeature@Base 6.1.20110713 + RemoveSegGapsInSeqEntry@Base 6.1.20100808 + RemoveSeqEntryFromSeqEntry@Base 6.1.20030421 + RemoveSequenceFromAlignments@Base 6.1.20050429 + RemoveSequencesActionAsnRead@Base 6.1.20120620 + RemoveSequencesActionAsnWrite@Base 6.1.20120620 + RemoveSequencesActionFree@Base 6.1.20120620 + RemoveSequencesActionNew@Base 6.1.20120620 + RemoveSequencesWithoutUpdates@Base 6.1.20120620 + RemoveSingleItemSet@Base 6.1.20120620 + RemoveSourceQualFromBioSource@Base 6.1.20081116 + RemoveSpeciesSpecific@Base 6.1.20160908 + RemoveStringConstraintPortionFromString@Base 6.1.20081116 + RemoveStructuredCommentKeywords@Base 6.1.20100808 + RemoveTaxRef@Base 6.1.20080302 + RemoveTextPortionFromString@Base 6.1.20100808 + RemoveUnnecessaryGeneXrefs@Base 6.1.20110713 + RemoveUnverifiedUserObjects@Base 6.1.20110713 + RemoveValNodeStringMatch@Base 6.1.20090719 + RemoveXrefsActionAsnRead@Base 6.1.20110713 + RemoveXrefsActionAsnWrite@Base 6.1.20110713 + RemoveXrefsActionFree@Base 6.1.20110713 + RemoveXrefsActionNew@Base 6.1.20110713 + RenormalizeNucProtSets@Base 6.1.20030421 + ReorderStructuredCommentFields@Base 6.1.20120620 + ReorderStructuredCommentsInSeqEntry@Base 6.1.20160908 + ReparseTabTableConvertFirstSpaceToTab@Base 6.1.20100808 + ReparseTabTableConvertMultiSpaceToTab@Base 6.1.20100808 + ReparseTabTableSeparateColumnAtDelimiter@Base 6.1.20110713 + ReplaceBioSourceAndPubs@Base 6.1.20030421 + ReplaceCollidingUpdateIDs@Base 6.1.20120620 + ReplaceComplexLocation@Base 6.1.20120620 + ReplaceConsensusSequenceFromTraces@Base 6.1.20081116 + ReplaceDataForProc@Base 6.1.20030421 + ReplaceDefinitionLine@Base 6.1.20100808 + ReplaceDiscrepancyItemWithFeatureTableStrings@Base 6.1.20080302 + ReplaceFakeIDWithIDFromTitle@Base 6.1.20120620 + ReplaceFuncAsnRead@Base 6.1.20110713 + ReplaceFuncAsnWrite@Base 6.1.20110713 + ReplaceFuncFree@Base 6.1.20110713 + ReplaceOneSequence@Base 6.1.20120620 + ReplaceRuleAsnRead@Base 6.1.20110713 + ReplaceRuleAsnWrite@Base 6.1.20110713 + ReplaceRuleFree@Base 6.1.20110713 + ReplaceRuleNew@Base 6.1.20110713 + ReplaceSeqAlignInSeqEntry@Base 6.1.20030421 + ReplaceSeqEntryWithSeqEntry@Base 6.1.20030421 + ReplaceSeqIdWithSeqId@Base 6.1.20081116 + ReplaceSeqIdWithSeqIdInFeat@Base 6.1.20100808 + ReplaceStopsWithSelenocysteineInSeqEntry@Base 6.1.20160908 + ReplaceStringConstraintPortionInString@Base 6.1.20110713 + ReportBadLocusTagFormat@Base 6.1.20080302 + ReportCoverageForBioseqSeqHist@Base 6.1.20081116 + ReportInconsistentGlobalDiscrepancyPrefixes@Base 6.1.20080302 + ReportInconsistentGlobalDiscrepancyStrings@Base 6.1.20080302 + ReportMissingFields@Base 6.1.20080302 + ReportNonUniqueGlobalDiscrepancy@Base 6.1.20080302 + ReportPrint@Base 6.1.20030421 + ReportProductNameProblems@Base 6.1.20110713 + ResetCapitalization@Base 6.1.20080302 + ResetSeqFeatInterval@Base 6.1.20030421 + ResolveExistingIDsCallback@Base 6.1.20120620 + RestoreSeqEntryObjMgrData@Base 6.1.20030421 + ResynchCDSPartials@Base 6.1.20030421 + ResynchCodingRegionPartials@Base 6.1.20030421 + ResynchCodingRegionPartialsEx@Base 6.1.20100808 + ResynchMRNAPartials@Base 6.1.20030421 + ResynchMessengerRNAPartials@Base 6.1.20030421 + ResynchPeptidePartials@Base 6.1.20031028 + ResynchProteinPartials@Base 6.1.20031028 + RetranslateCdsActionAsnRead@Base 6.1.20160908 + RetranslateCdsActionAsnWrite@Base 6.1.20160908 + RetranslateCdsActionFree@Base 6.1.20160908 + RetranslateCdsActionNew@Base 6.1.20160908 + RetranslateOneCDS@Base 6.1.20090301 + RevCompBioseqList@Base 6.1.20120620 + RevCompFeats@Base 6.1.20110713 + RevCompOneFeatForBioseq@Base 6.1.20081116 + ReverseAlignmentStrand@Base 6.1.20081116 + ReverseBioseqInAlignment@Base 6.1.20120620 + ReverseQualityScores@Base 6.1.20100808 + ReverseSeqData@Base 6.1.20080302 + ReverseSeqGraph@Base 6.1.20100808 + RnaFeatTypeAsnRead@Base 6.1.20081116 + RnaFeatTypeAsnWrite@Base 6.1.20081116 + RnaFeatTypeFree@Base 6.1.20081116 + RnaQualAsnRead@Base 6.1.20081116 + RnaQualAsnWrite@Base 6.1.20081116 + RnaQualFree@Base 6.1.20081116 + RnaQualFromFeatureField@Base 6.1.20081116 + RnaQualNew@Base 6.1.20081116 + RnaQualPairAsnRead@Base 6.1.20081116 + RnaQualPairAsnWrite@Base 6.1.20081116 + RnaQualPairFree@Base 6.1.20081116 + RnaQualPairNew@Base 6.1.20081116 + RnaRefAsnRead@Base 6.1.20030421 + RnaRefAsnWrite@Base 6.1.20030421 + RnaRefFree@Base 6.1.20030421 + RnaRefFromLabel@Base 6.1.20081116 + RnaRefNew@Base 6.1.20030421 + RnaTypeFromFeatdef@Base 6.1.20081116 + RowSourceFree@Base 6.1.20030421 + RowSourceNew@Base 6.1.20030421 + RsiteRefAsnRead@Base 6.1.20030421 + RsiteRefAsnWrite@Base 6.1.20030421 + RsiteRefFree@Base 6.1.20030421 + SAClearMove@Base 6.1.20030421 + SAIndex2Free2@Base 6.1.20030421 + SAIndexFree@Base 6.1.20030421 + SAIndexNew@Base 6.1.20030421 + SAM_Add2SeqAlign@Base 6.1.20030421 + SAM_AlignIdComp@Base 6.1.20030421 + SAM_AlignIdCompare@Base 6.1.20030421 + SAM_AlignIdDup@Base 6.1.20030421 + SAM_AlignIdDupList@Base 6.1.20030421 + SAM_AlignIdIn@Base 6.1.20030421 + SAM_ExtractSips@Base 6.1.20030421 + SAM_FreeSeqIdSet@Base 6.1.20030421 + SAM_InRange@Base 6.1.20030421 + SAM_LexicalComp@Base 6.1.20030421 + SAM_MakeTemp@Base 6.1.20030421 + SAM_MakeViewerFree@Base 6.1.20030421 + SAM_NewDenseSeg@Base 6.1.20030421 + SAM_NewSeqAlign@Base 6.1.20030421 + SAM_OrderSeqID@Base 6.1.20030421 + SAM_OrderSeqIDChain@Base 6.1.20030421 + SAM_RangeOverlap@Base 6.1.20030421 + SAM_ReplaceGI@Base 6.1.20030421 + SAM_SeqAlignExtract@Base 6.1.20030421 + SAM_SeqIdCompareAll@Base 6.1.20030421 + SAM_SeqIdFromSeqLoc@Base 6.1.20030421 + SAM_ValNodeByPosition@Base 6.1.20030421 + SAM_ValNodeExtract@Base 6.1.20030421 + SAM_ValNodePut@Base 6.1.20030421 + SAMergeBlocks@Base 6.1.20030421 + SARegionBounds@Base 6.1.20030421 + SARemoveSequence@Base 6.1.20030421 + SAReturnBlock@Base 6.1.20030421 + SAReturnSegment@Base 6.1.20030421 + SASeqDatFree@Base 6.1.20030421 + SASeqDatNew@Base 6.1.20030421 + SASplitBlock@Base 6.1.20030421 + SATraverse@Base 6.1.20030421 + SATraverseBlock@Base 6.1.20030421 + SPBlockAsnRead@Base 6.1.20030421 + SPBlockAsnWrite@Base 6.1.20030421 + SPBlockFree@Base 6.1.20030421 + SPBlockNew@Base 6.1.20030421 + SPCompressDNA@Base 6.1.20030421 + SPCompressFree@Base 6.1.20030421 + SPCompressNew@Base 6.1.20030421 + SPRebuildDNA@Base 6.1.20030421 + SUnculturedLen@Base 6.1.20160908 + S_atoms@Base 6.1.20030421 + Safe_seqid_to_string@Base 6.1.20160908 + SalpStatsInputBlockFree@Base 6.1.20030421 + SalpStatsInputBlockNew@Base 6.1.20030421 + SalpStatsResultsFree@Base 6.1.20030421 + SalpStatsResultsNew@Base 6.1.20030421 + SaveDiscrepancyConfig@Base 6.1.20070822 + SaveDiscrepancyConfigEx@Base 6.1.20100808 + SaveNoteToCharPtrStack@Base 6.1.20030421 + SaveSeqEntryObjMgrData@Base 6.1.20030421 + Saved_ch@Base 6.1.20030421 + ScanBioseqSetRelease@Base 6.1.20030421 + ScanBioseqSetReleaseMT@Base 6.1.20090719 + ScanEmbedQual@Base 6.1.20030421 + ScanEntrezgeneSetRelease@Base 6.1.20050429 + ScanTabTableForSpecialCharacters@Base 6.1.20080302 + ScoreAdd@Base 6.1.20030421 + ScoreAndEvalueToBuffers@Base 6.1.20040616 + ScoreDup@Base 6.1.20030421 + ScoreDupAdd@Base 6.1.20030421 + ScoreNew@Base 6.1.20030421 + ScorePtrUseThisGi@Base 6.1.20030421 + ScoreRead@Base 6.1.20030421 + ScoreSetAsnRead@Base 6.1.20030421 + ScoreSetAsnWrite@Base 6.1.20030421 + ScoreSetFree@Base 6.1.20030421 + Se_atoms@Base 6.1.20030421 + SearchFuncAsnRead@Base 6.1.20110713 + SearchFuncAsnWrite@Base 6.1.20110713 + SearchFuncFree@Base 6.1.20110713 + SegHasParts@Base 6.1.20050828 + SegLocToParts@Base 6.1.20030421 + SegLocToPartsEx@Base 6.1.20030421 + SegOrDeltaBioseqToRaw@Base 6.1.20030421 + SegregateSetsByBioseqList@Base 6.1.20120620 + SegregateSetsByFungusGroup@Base 6.1.20120620 + SegregateSetsByNumber@Base 6.1.20100808 + SegregateSetsByNumberPerSet@Base 6.1.20100808 + SegregateSetsByPlantGroup@Base 6.1.20120620 + SelEdStructAdd@Base 6.1.20030421 + SelEdStructDel@Base 6.1.20030421 + SelEdStructDup@Base 6.1.20030421 + SelEdStructListDel@Base 6.1.20030421 + SelStructAdd@Base 6.1.20030421 + SelStructCpy@Base 6.1.20030421 + SelStructDel@Base 6.1.20030421 + SelStructDelList@Base 6.1.20030421 + SelStructDup@Base 6.1.20030421 + SelStructNew@Base 6.1.20030421 + SelectBestPub@Base 6.1.20030421 + SelectLongestSeqAlign@Base 6.1.20030421 + SelectType@Base 6.1.20030421 + SendTextToFile@Base 6.1.20030421 + SeqAlignAddInSeqEntry@Base 6.1.20030421 + SeqAlignAlignability@Base 6.1.20030421 + SeqAlignAsnLoad@Base 6.1.20030421 + SeqAlignAsnRead@Base 6.1.20030421 + SeqAlignAsnWrite@Base 6.1.20030421 + SeqAlignBestScore@Base 6.1.20030421 + SeqAlignBioseqDeleteById@Base 6.1.20030421 + SeqAlignBioseqDeleteByIdFromSeqEntry@Base 6.1.20030421 + SeqAlignBioseqsOrder@Base 6.1.20030421 + SeqAlignBoolSegCpy@Base 6.1.20030421 + SeqAlignBoolSegToDenseSeg@Base 6.1.20030421 + SeqAlignConsistentOverlap@Base 6.1.20030421 + SeqAlignConvertDspToDdpList@Base 6.1.20030421 + SeqAlignCount@Base 6.1.20030421 + SeqAlignCountMismatches@Base 6.1.20030421 + SeqAlignCountSegs@Base 6.1.20030421 + SeqAlignDeleteByLoc@Base 6.1.20030421 + SeqAlignDeleteByLocCallback@Base 6.1.20051206 + SeqAlignDenseSegToBoolSeg@Base 6.1.20030421 + SeqAlignDup@Base 6.1.20030421 + SeqAlignDupAdd@Base 6.1.20030421 + SeqAlignDupRegion@Base 6.1.20030421 + SeqAlignEndExtend@Base 6.1.20030421 + SeqAlignExtend@Base 6.1.20030421 + SeqAlignExtractByIds@Base 6.1.20030421 + SeqAlignFilterByCoverage@Base 6.1.20030421 + SeqAlignFindSeqId@Base 6.1.20030421 + SeqAlignFree@Base 6.1.20030421 + SeqAlignGapCount@Base 6.1.20030421 + SeqAlignGapList@Base 6.1.20030421 + SeqAlignIDCache@Base 6.1.20030421 + SeqAlignIDList@Base 6.1.20030421 + SeqAlignIDUncache@Base 6.1.20030421 + SeqAlignIDUncacheAll@Base 6.1.20030421 + SeqAlignId@Base 6.1.20030421 + SeqAlignIdReplace@Base 6.1.20030421 + SeqAlignIndexFree@Base 6.1.20030421 + SeqAlignIndexNew@Base 6.1.20030421 + SeqAlignInsertByLoc@Base 6.1.20060301 + SeqAlignLabel@Base 6.1.20030421 + SeqAlignLength@Base 6.1.20030421 + SeqAlignLengthForId@Base 6.1.20030421 + SeqAlignLink@Base 6.1.20030421 + SeqAlignListCountMismatches@Base 6.1.20030421 + SeqAlignListDup@Base 6.1.20030421 + SeqAlignListFree@Base 6.1.20030421 + SeqAlignListGapList@Base 6.1.20030421 + SeqAlignListGlobalStats@Base 6.1.20030421 + SeqAlignListLongestSegment@Base 6.1.20030421 + SeqAlignListMergeAll@Base 6.1.20030421 + SeqAlignListReverseStrand@Base 6.1.20030421 + SeqAlignListStartStop@Base 6.1.20030421 + SeqAlignLongestFN@Base 6.1.20030421 + SeqAlignLongestSegment@Base 6.1.20030421 + SeqAlignMapOnFirstSeq@Base 6.1.20030421 + SeqAlignMerge@Base 6.1.20030421 + SeqAlignMolType@Base 6.1.20030421 + SeqAlignNew@Base 6.1.20030421 + SeqAlignNonOverlap@Base 6.1.20030421 + SeqAlignNonRedundant@Base 6.1.20030421 + SeqAlignOverlapLen@Base 6.1.20030421 + SeqAlignOverlapLenByLoc@Base 6.1.20030421 + SeqAlignPrint@Base 6.1.20030421 + SeqAlignReplaceId@Base 6.1.20030421 + SeqAlignReverse@Base 6.1.20030421 + SeqAlignSameIdMerge@Base 6.1.20030421 + SeqAlignScoreFix@Base 6.1.20030421 + SeqAlignScorePtrGet@Base 6.1.20030421 + SeqAlignScoreRead@Base 6.1.20030421 + SeqAlignSeqLocComp@Base 6.1.20030421 + SeqAlignSetAsnRead@Base 6.1.20030421 + SeqAlignSetAsnWrite@Base 6.1.20030421 + SeqAlignSetFree@Base 6.1.20030421 + SeqAlignSetNew@Base 6.1.20030421 + SeqAlignSimpleStats@Base 6.1.20030421 + SeqAlignSort@Base 6.1.20030421 + SeqAlignSortByEvalue@Base 6.1.20030421 + SeqAlignSortByLength@Base 6.1.20030421 + SeqAlignSortByRegion@Base 6.1.20030421 + SeqAlignSortByScore@Base 6.1.20030421 + SeqAlignSortByStart@Base 6.1.20030421 + SeqAlignStart@Base 6.1.20030421 + SeqAlignStartStop@Base 6.1.20030421 + SeqAlignStartStopById@Base 6.1.20030421 + SeqAlignStartStopOverlap@Base 6.1.20030421 + SeqAlignStats@Base 6.1.20030421 + SeqAlignStop@Base 6.1.20030421 + SeqAlignStrand@Base 6.1.20030421 + SeqAlignSwapOrder@Base 6.1.20030421 + SeqAlignToBS@Base 6.1.20030421 + SeqAlignTrunc2@Base 6.1.20030421 + SeqAlignTrunc@Base 6.1.20030421 + SeqAlignWindowScore@Base 6.1.20030421 + SeqAlignWindowScoreFN@Base 6.1.20030421 + SeqAlignWindowStats@Base 6.1.20030421 + SeqAlignWrite@Base 6.1.20030421 + SeqAnnotAsnRead@Base 6.1.20030421 + SeqAnnotAsnWrite@Base 6.1.20030421 + SeqAnnotBoolSegToDenseSeg@Base 6.1.20030421 + SeqAnnotDenseSegToBoolSeg@Base 6.1.20030421 + SeqAnnotForSeqAlign@Base 6.1.20030421 + SeqAnnotFree@Base 6.1.20030421 + SeqAnnotLabel@Base 6.1.20030421 + SeqAnnotMerge@Base 6.1.20030421 + SeqAnnotNew@Base 6.1.20030421 + SeqAnnotSetAsnRead@Base 6.1.20030421 + SeqAnnotSetAsnWrite@Base 6.1.20030421 + SeqAnnotSetExtraCheck@Base 6.1.20030421 + SeqAsnLoad@Base 6.1.20030421 + SeqBlockAsnLoad@Base 6.1.20030421 + SeqBondAsnRead@Base 6.1.20030421 + SeqBondAsnWrite@Base 6.1.20030421 + SeqBondFree@Base 6.1.20030421 + SeqBondNew@Base 6.1.20030421 + SeqCodeAsnLoad@Base 6.1.20030421 + SeqCodeSetAsnRead@Base 6.1.20030421 + SeqCodeSetAsnWrite@Base 6.1.20030421 + SeqCodeSetFree@Base 6.1.20030421 + SeqCodeSetLoad@Base 6.1.20030421 + SeqCodeSetNew@Base 6.1.20030421 + SeqCodeTableAsnRead@Base 6.1.20030421 + SeqCodeTableAsnWrite@Base 6.1.20030421 + SeqCodeTableComp@Base 6.1.20030421 + SeqCodeTableFind@Base 6.1.20030421 + SeqCodeTableFindObj@Base 6.1.20030421 + SeqCodeTableFree@Base 6.1.20030421 + SeqCodeTableNew@Base 6.1.20030421 + SeqCoordToAlignCoord@Base 6.1.20030421 + SeqDataAsnRead@Base 6.1.20030421 + SeqDataAsnWrite@Base 6.1.20030421 + SeqDataAsnWriteXML@Base 6.1.20050429 + SeqDataFree@Base 6.1.20070822 + SeqDeleteByLoc@Base 6.1.20030421 + SeqDeleteByLocEx@Base 6.1.20100808 + SeqDescAsnRead@Base 6.1.20030421 + SeqDescAsnWrite@Base 6.1.20030421 + SeqDescFree@Base 6.1.20030421 + SeqDescLabel@Base 6.1.20030421 + SeqDescrAdd@Base 6.1.20030421 + SeqDescrAddPointer@Base 6.1.20030421 + SeqDescrAsnRead@Base 6.1.20030421 + SeqDescrAsnWrite@Base 6.1.20030421 + SeqDescrExtraCheck@Base 6.1.20030421 + SeqDescrFree@Base 6.1.20030421 + SeqDescrFromBioSample@Base 6.1.20160908 + SeqDescrNew@Base 6.1.20030421 + SeqEdAdjustFeatureInterval@Base 6.1.20100808 + SeqEdDeleteFromBsp@Base 6.1.20041020 + SeqEdFeatureAdjust@Base 6.1.20041020 + SeqEdFixProteinFeatures@Base 6.1.20080302 + SeqEdGetNextFeature@Base 6.1.20041020 + SeqEdGetNthIntervalEndPoints@Base 6.1.20041020 + SeqEdInsert@Base 6.1.20041020 + SeqEdInsertAdjustCdRgn@Base 6.1.20041020 + SeqEdInsertAdjustRNA@Base 6.1.20041020 + SeqEdJournalFree@Base 6.1.20041020 + SeqEdJournalNewFeatEdit@Base 6.1.20041020 + SeqEdJournalNewSeqEdit@Base 6.1.20041020 + SeqEdReindexAffectedFeatures@Base 6.1.20041020 + SeqEdReindexFeature@Base 6.1.20041020 + SeqEdRemapLocation@Base 6.1.20080302 + SeqEdRepairIntervalOrder@Base 6.1.20041020 + SeqEdSeqFeatDelete@Base 6.1.20090719 + SeqEdSeqLocDelete@Base 6.1.20041020 + SeqEdSeqLocInsert@Base 6.1.20041020-3~ + SeqEdTranslateOneCDS@Base 6.1.20080302 + SeqEntryAsnGet@Base 6.1.20030421 + SeqEntryAsnOut@Base 6.1.20030421 + SeqEntryAsnRead@Base 6.1.20030421 + SeqEntryAsnWrite@Base 6.1.20030421 + SeqEntryContainsSeqIdOfMolType@Base 6.1.20030421 + SeqEntryConvert@Base 6.1.20030421 + SeqEntryDelFeat@Base 6.1.20030421 + SeqEntryDelFeatEx@Base 6.1.20100808 + SeqEntryDoConvert@Base 6.1.20030421 + SeqEntryFasta@Base 6.1.20030421 + SeqEntryFastaStream@Base 6.1.20040505 + SeqEntryFastaStreamEx@Base 6.1.20070822 + SeqEntryFind@Base 6.1.20030421 + SeqEntryFree@Base 6.1.20030421 + SeqEntryFreeComponents@Base 6.1.20030421 + SeqEntryGetScope@Base 6.1.20030421 + SeqEntryGetSeqDescr@Base 6.1.20030421 + SeqEntryGetSeqFeat@Base 6.1.20030421 + SeqEntryGetTitle@Base 6.1.20030421 + SeqEntryHasAligns@Base 6.1.20030421 + SeqEntryHasNucs@Base 6.1.20030421 + SeqEntryHasPairwiseAlignments@Base 6.1.20120620 + SeqEntryHasProts@Base 6.1.20030421 + SeqEntryLabel@Base 6.1.20030421 + SeqEntryList@Base 6.1.20030421 + SeqEntryLoad@Base 6.1.20030421 + SeqEntryNew@Base 6.1.20030421 + SeqEntryReplaceSeqID@Base 6.1.20030421 + SeqEntrySetScope@Base 6.1.20030421 + SeqEntryToBioSource@Base 6.1.20030421 + SeqEntryToEntrez@Base 6.1.20030421 + SeqEntryToFasta@Base 6.1.20030421 + SeqEntryToFastaEx@Base 6.1.20030421 + SeqEntryToFlat@Base 6.1.20030421 + SeqEntryToFlatAjp@Base 6.1.20030421 + SeqEntryToFlatEx@Base 6.1.20030421 + SeqEntryToGBFlatNoSeq@Base 6.1.20030421 + SeqEntryToGeneticCode@Base 6.1.20030421 + SeqEntryToGnbk@Base 6.1.20030421 + SeqEntryToPartRpt@Base 6.1.20030421 + SeqEntryToSeqLoc@Base 6.1.20030421 + SeqEntryToStrArray@Base 6.1.20030421 + SeqEntryToStrArrayEx@Base 6.1.20030421 + SeqEntryToStrArrayQEx@Base 6.1.20030421 + SeqEntrysToDefline@Base 6.1.20030421 + SeqEntrysToFasta@Base 6.1.20030421 + SeqEntrysToFastaX@Base 6.1.20030421 + SeqFeatAsnLoad@Base 6.1.20030421 + SeqFeatAsnRead@Base 6.1.20030421 + SeqFeatAsnWrite@Base 6.1.20030421 + SeqFeatDataAsnRead@Base 6.1.20030421 + SeqFeatDataAsnWrite@Base 6.1.20030421 + SeqFeatDataFree@Base 6.1.20030421 + SeqFeatDelete@Base 6.1.20030421 + SeqFeatFree@Base 6.1.20030421 + SeqFeatIdAsnRead@Base 6.1.20030421 + SeqFeatIdAsnWrite@Base 6.1.20030421 + SeqFeatIdDup@Base 6.1.20030421 + SeqFeatIdFree@Base 6.1.20030421 + SeqFeatNew@Base 6.1.20030421 + SeqFeatSetAsnRead@Base 6.1.20030421 + SeqFeatSetAsnWrite@Base 6.1.20030421 + SeqFeatSetAsnWriteExtra@Base 6.1.20030421 + SeqFeatSupportAsnRead@Base 6.1.20110713 + SeqFeatSupportAsnWrite@Base 6.1.20110713 + SeqFeatSupportFree@Base 6.1.20110713 + SeqFeatSupportNew@Base 6.1.20110713 + SeqFeatToXref@Base 6.1.20030421 + SeqFeatXrefAsnRead@Base 6.1.20030421 + SeqFeatXrefAsnWrite@Base 6.1.20030421 + SeqFeatXrefFree@Base 6.1.20030421 + SeqFeatXrefNew@Base 6.1.20030421 + SeqFeatsCopy@Base 6.1.20030421 + SeqGapAsnRead@Base 6.1.20070822 + SeqGapAsnWrite@Base 6.1.20070822 + SeqGapFree@Base 6.1.20070822 + SeqGapNew@Base 6.1.20070822 + SeqGenomeToFlat@Base 6.1.20030421 + SeqGenomeToFlatEx@Base 6.1.20030421 + SeqGraphAsnRead@Base 6.1.20030421 + SeqGraphAsnWrite@Base 6.1.20030421 + SeqGraphFree@Base 6.1.20030421 + SeqGraphLabel@Base 6.1.20030421 + SeqGraphNew@Base 6.1.20030421 + SeqGraphSetAsnRead@Base 6.1.20030421 + SeqGraphSetAsnWrite@Base 6.1.20030421 + SeqHistAlignLabel@Base 6.1.20030421 + SeqHistAsnRead@Base 6.1.20030421 + SeqHistAsnWrite@Base 6.1.20030421 + SeqHistFree@Base 6.1.20030421 + SeqHistNew@Base 6.1.20030421 + SeqIdAsnRead@Base 6.1.20030421 + SeqIdAsnWrite@Base 6.1.20030421 + SeqIdBestRank@Base 6.1.20030421 + SeqIdComp@Base 6.1.20030421 + SeqIdDup@Base 6.1.20030421 + SeqIdDupBestList@Base 6.1.20030421 + SeqIdDupList@Base 6.1.20030421 + SeqIdFindBest@Base 6.1.20030421 + SeqIdFindBestAccession@Base 6.1.20030421 + SeqIdFindWorst@Base 6.1.20030421 + SeqIdForSameBioseq@Base 6.1.20030421 + SeqIdFree@Base 6.1.20030421 + SeqIdFromAccession@Base 6.1.20030421 + SeqIdFromAccessionDotVersion@Base 6.1.20030421 + SeqIdFromAccessionEx@Base 6.1.20030421 + SeqIdFromAlignNode@Base 6.1.20030421 + SeqIdFromPubSeqString@Base 6.1.20120620 + SeqIdIn@Base 6.1.20030421 + SeqIdInSeqLocList@Base 6.1.20030421 + SeqIdIndexElementCmp@Base 6.1.20030421 + SeqIdLabel@Base 6.1.20030421 + SeqIdLabelLen@Base 6.1.20090719 + SeqIdListToCharArray@Base 6.1.20030421 + SeqIdListToValNodeSeqIdList@Base 6.1.20110713 + SeqIdListfromSeqLoc@Base 6.1.20030421 + SeqIdLocate@Base 6.1.20030421 + SeqIdMatch@Base 6.1.20030421 + SeqIdOrderInBioseqIdList@Base 6.1.20030421 + SeqIdOrderInList@Base 6.1.20030421 + SeqIdParse@Base 6.1.20030421 + SeqIdPrint@Base 6.1.20030421 + SeqIdPtrFromSeqAlign@Base 6.1.20030421 + SeqIdReplaceID@Base 6.1.20030421 + SeqIdReplaceListFree@Base 6.1.20090301 + SeqIdSelect@Base 6.1.20030421 + SeqIdSetAsnRead@Base 6.1.20030421 + SeqIdSetAsnWrite@Base 6.1.20030421 + SeqIdSetDup@Base 6.1.20030421 + SeqIdSetFree@Base 6.1.20030421 + SeqIdStripLocus@Base 6.1.20030421 + SeqIdWholeLabel@Base 6.1.20090719 + SeqIdWrite@Base 6.1.20030421 + SeqInsertByLoc@Base 6.1.20030421 + SeqIntAsnRead@Base 6.1.20030421 + SeqIntAsnWrite@Base 6.1.20030421 + SeqIntCheck@Base 6.1.20030421 + SeqIntFree@Base 6.1.20030421 + SeqIntNew@Base 6.1.20030421 + SeqLineReEval@Base 6.1.20030421 + SeqLitAsnRead@Base 6.1.20030421 + SeqLitAsnWrite@Base 6.1.20030421 + SeqLitFastaStream@Base 6.1.20110713 + SeqLitFree@Base 6.1.20030421 + SeqLitNew@Base 6.1.20030421 + SeqLitPack@Base 6.1.20030421 + SeqLocAdd@Base 6.1.20030421 + SeqLocAinB@Base 6.1.20030421 + SeqLocAsnLoad@Base 6.1.20030421 + SeqLocAsnRead@Base 6.1.20030421 + SeqLocAsnWrite@Base 6.1.20030421 + SeqLocBadSortOrder@Base 6.1.20030421 + SeqLocCheck@Base 6.1.20030421 + SeqLocCompare@Base 6.1.20030421 + SeqLocCompareEx@Base 6.1.20100808 + SeqLocCopy@Base 6.1.20050429 + SeqLocCopyPart@Base 6.1.20030421 + SeqLocCopyRegion@Base 6.1.20030421 + SeqLocDelete@Base 6.1.20030421 + SeqLocDeleteEx@Base 6.1.20030421 + SeqLocEquivAsnRead@Base 6.1.20030421 + SeqLocEquivAsnWrite@Base 6.1.20030421 + SeqLocFastaStream@Base 6.1.20050429 + SeqLocFindNext@Base 6.1.20030421 + SeqLocFindPart@Base 6.1.20030421 + SeqLocFree@Base 6.1.20030421 + SeqLocFromSeqAlign@Base 6.1.20030421 + SeqLocGetSegLens@Base 6.1.20030421 + SeqLocId@Base 6.1.20030421 + SeqLocIdForProduct@Base 6.1.20040204 + SeqLocInsert@Base 6.1.20030421 + SeqLocIntNew@Base 6.1.20030421 + SeqLocLabel@Base 6.1.20030421 + SeqLocLen@Base 6.1.20030421 + SeqLocListFromSeqAlign@Base 6.1.20030421 + SeqLocListHasLegend@Base 6.1.20030421 + SeqLocListMatch@Base 6.1.20030421 + SeqLocListOfBioseqsFromSeqAlign@Base 6.1.20030421 + SeqLocMerge@Base 6.1.20030421 + SeqLocMergeEx@Base 6.1.20030421 + SeqLocMergeExEx@Base 6.1.20040616 + SeqLocMixAsnRead@Base 6.1.20030421 + SeqLocMixAsnWrite@Base 6.1.20030421 + SeqLocMixFromSeqAlign@Base 6.1.20030421 + SeqLocMixedStrands@Base 6.1.20030421 + SeqLocMol@Base 6.1.20030421 + SeqLocOffset@Base 6.1.20030421 + SeqLocOrder@Base 6.1.20030421 + SeqLocPackage@Base 6.1.20030421 + SeqLocPartialCheck@Base 6.1.20030421 + SeqLocPartialCheckEx@Base 6.1.20070822 + SeqLocPntNew@Base 6.1.20030421 + SeqLocPrint@Base 6.1.20030421 + SeqLocPrintUseBestID@Base 6.1.20060301 + SeqLocReMap@Base 6.1.20030421 + SeqLocReMapEx@Base 6.1.20040204 + SeqLocReplace@Base 6.1.20030421 + SeqLocReplaceID@Base 6.1.20030421 + SeqLocRevCmp@Base 6.1.20030421 + SeqLocSetAsnRead@Base 6.1.20030421 + SeqLocSetAsnWrite@Base 6.1.20030421 + SeqLocSetFree@Base 6.1.20030421 + SeqLocStart@Base 6.1.20030421 + SeqLocStop@Base 6.1.20030421 + SeqLocStrand@Base 6.1.20030421 + SeqLocSubtract@Base 6.1.20030421 + SeqLocToFastaSeqAlign@Base 6.1.20030421 + SeqLocToFlat@Base 6.1.20030421 + SeqLocWholeNew@Base 6.1.20080302 + SeqLocsToDeltaSeqs@Base 6.1.20030421 + SeqMapTableAsnRead@Base 6.1.20030421 + SeqMapTableAsnWrite@Base 6.1.20030421 + SeqMapTableConvert@Base 6.1.20030421 + SeqMapTableFind@Base 6.1.20030421 + SeqMapTableFindObj@Base 6.1.20030421 + SeqMapTableFree@Base 6.1.20030421 + SeqMapTableNew@Base 6.1.20030421 + SeqMgrAdd@Base 6.1.20030421 + SeqMgrAddToBioseqIndex@Base 6.1.20030421 + SeqMgrAlsoSelect@Base 6.1.20030421 + SeqMgrBuildFeatureIndex@Base 6.1.20030421 + SeqMgrClearBioseqIndex@Base 6.1.20070822 + SeqMgrClearFeatureIndexes@Base 6.1.20030421 + SeqMgrDeSelect@Base 6.1.20030421 + SeqMgrDelete@Base 6.1.20030421 + SeqMgrDeleteFromBioseqIndex@Base 6.1.20030421 + SeqMgrDeleteIndexesInRecord@Base 6.1.20030421 + SeqMgrExploreBioseqs@Base 6.1.20030421 + SeqMgrExploreDescriptors@Base 6.1.20030421 + SeqMgrExploreFeatures@Base 6.1.20030421 + SeqMgrExploreFeaturesRev@Base 6.1.20030421 + SeqMgrExploreSegments@Base 6.1.20030421 + SeqMgrFeaturesAreIndexed@Base 6.1.20030421 + SeqMgrFindAnnotDescByID@Base 6.1.20050429 + SeqMgrFindSMFeatItemByID@Base 6.1.20030421 + SeqMgrFindSMFeatItemPtr@Base 6.1.20030421 + SeqMgrFindSeqAlignByID@Base 6.1.20030421 + SeqMgrFreeBioseqExtraFunc@Base 6.1.20030421 + SeqMgrFreeCache@Base 6.1.20030421 + SeqMgrGeneIsSuppressed@Base 6.1.20030421 + SeqMgrGet@Base 6.1.20030421 + SeqMgrGetAllOverlappingFeatures@Base 6.1.20030421 + SeqMgrGetBestProteinFeature@Base 6.1.20030421 + SeqMgrGetBioseqContext@Base 6.1.20030421 + SeqMgrGetCDSgivenProduct@Base 6.1.20030421 + SeqMgrGetDesiredAnnotDesc@Base 6.1.20050429 + SeqMgrGetDesiredDescriptor@Base 6.1.20030421 + SeqMgrGetDesiredFeature@Base 6.1.20030421 + SeqMgrGetEntityIDForSeqEntry@Base 6.1.20030421 + SeqMgrGetExtraDataForOmdp@Base 6.1.20090719 + SeqMgrGetFeatureByFeatID@Base 6.1.20050828 + SeqMgrGetFeatureByLabel@Base 6.1.20030421 + SeqMgrGetFeatureInIndex@Base 6.1.20030421 + SeqMgrGetGeneByLocusTag@Base 6.1.20050828 + SeqMgrGetGeneXref@Base 6.1.20030421 + SeqMgrGetGeneXrefEx@Base 6.1.20110713 + SeqMgrGetLocationSupersetmRNA@Base 6.1.20041020 + SeqMgrGetNextAnnotDesc@Base 6.1.20050429 + SeqMgrGetNextDescriptor@Base 6.1.20030421 + SeqMgrGetNextFeature@Base 6.1.20030421 + SeqMgrGetNextFeatureByLabel@Base 6.1.20030421 + SeqMgrGetNextGeneByLocusTag@Base 6.1.20040505 + SeqMgrGetOmdpForBioseq@Base 6.1.20070822 + SeqMgrGetOverlappingCDS@Base 6.1.20030421 + SeqMgrGetOverlappingFeature@Base 6.1.20030421 + SeqMgrGetOverlappingFeatureEx@Base 6.1.20110713 + SeqMgrGetOverlappingGene@Base 6.1.20030421 + SeqMgrGetOverlappingOperon@Base 6.1.20031028 + SeqMgrGetOverlappingPub@Base 6.1.20030421 + SeqMgrGetOverlappingSource@Base 6.1.20030421 + SeqMgrGetOverlappingmRNA@Base 6.1.20030421 + SeqMgrGetPROTgivenProduct@Base 6.1.20030421 + SeqMgrGetParentOfPart@Base 6.1.20030421 + SeqMgrGetProtXref@Base 6.1.20030421 + SeqMgrGetRNAgivenProduct@Base 6.1.20030421 + SeqMgrGetSeqEntryForData@Base 6.1.20030421 + SeqMgrGetSeqEntryForEntityID@Base 6.1.20030421 + SeqMgrGetSfpProductList@Base 6.1.20030421 + SeqMgrHoldIndexing@Base 6.1.20030421 + SeqMgrIndexAlignments@Base 6.1.20030421 + SeqMgrIndexFeatures@Base 6.1.20030421 + SeqMgrIndexFeaturesEx@Base 6.1.20030421 + SeqMgrIndexFeaturesExEx@Base 6.1.20050429 + SeqMgrLinkSeqEntry@Base 6.1.20030421 + SeqMgrMapPartToSegmentedBioseq@Base 6.1.20030421 + SeqMgrReadLock@Base 6.1.20030421 + SeqMgrReapBioseqExtraFunc@Base 6.1.20030421 + SeqMgrRedoDescriptorIndexes@Base 6.1.20100808 + SeqMgrRedoFeatByLabelIndexes@Base 6.1.20100808 + SeqMgrReloadBioseqExtraFunc@Base 6.1.20030421 + SeqMgrReplaceInBioseqIndex@Base 6.1.20030421 + SeqMgrSelect@Base 6.1.20030421 + SeqMgrSeqEntry@Base 6.1.20030421 + SeqMgrSetAccnVerFunc@Base 6.1.20030421 + SeqMgrSetBSFetchTop@Base 6.1.20030421 + SeqMgrSetColor@Base 6.1.20030421 + SeqMgrSetFetchOnLock@Base 6.1.20030421 + SeqMgrSetLenFunc@Base 6.1.20030421 + SeqMgrSetPreCache@Base 6.1.20030421 + SeqMgrSetSeqIdSetFunc@Base 6.1.20030421 + SeqMgrUnlock@Base 6.1.20030421 + SeqMgrVisitDescriptors@Base 6.1.20030421 + SeqMgrVisitFeatures@Base 6.1.20030421 + SeqMgrWriteLock@Base 6.1.20030421 + SeqPntAsnRead@Base 6.1.20030421 + SeqPntAsnWrite@Base 6.1.20030421 + SeqPntCheck@Base 6.1.20030421 + SeqPntFree@Base 6.1.20030421 + SeqPntNew@Base 6.1.20030421 + SeqPointPrint@Base 6.1.20030421 + SeqPointWrite@Base 6.1.20030421 + SeqPortAdjustLength@Base 6.1.20030421 + SeqPortFree@Base 6.1.20030421 + SeqPortGetResidue@Base 6.1.20030421 + SeqPortNew@Base 6.1.20030421 + SeqPortNewByLoc@Base 6.1.20030421 + SeqPortRead@Base 6.1.20030421 + SeqPortSeek@Base 6.1.20030421 + SeqPortSetUpAlphabet@Base 6.1.20030421 + SeqPortSetUpFields@Base 6.1.20030421 + SeqPortSetValues@Base 6.1.20030421 + SeqPortSet_do_virtual@Base 6.1.20030421 + SeqPortSet_do_virtualEx@Base 6.1.20030421 + SeqPortSet_is_circle@Base 6.1.20030421 + SeqPortSet_is_seg@Base 6.1.20030421 + SeqPortStream@Base 6.1.20030421 + SeqPortStreamInt@Base 6.1.20040505 + SeqPortStreamLit@Base 6.1.20110713 + SeqPortStreamLoc@Base 6.1.20040505 + SeqPortTell@Base 6.1.20030421 + SeqPosFromTilingPos@Base 6.1.20081116 + SeqPosInLineColumn@Base 6.1.20030421 + SeqPosToLineColumn@Base 6.1.20030421 + SeqResAsnLoad@Base 6.1.20030421 + SeqSearchAddNucleotidePattern@Base 6.1.20030421 + SeqSearchFree@Base 6.1.20030421 + SeqSearchNew@Base 6.1.20030421 + SeqSearchProcessBioseq@Base 6.1.20030421 + SeqSearchProcessCharacter@Base 6.1.20030421 + SeqSearchReset@Base 6.1.20030421 + SeqSetAsnLoad@Base 6.1.20030421 + SeqSubmitAsnRead@Base 6.1.20030421 + SeqSubmitAsnWrite@Base 6.1.20030421 + SeqSubmitFree@Base 6.1.20030421 + SeqSubmitLabel@Base 6.1.20030421 + SeqSubmitNew@Base 6.1.20030421 + SeqSubmitToFlat@Base 6.1.20030421 + SeqTableAsnRead@Base 6.1.20080302 + SeqTableAsnWrite@Base 6.1.20080302 + SeqTableColumnAsnRead@Base 6.1.20080302 + SeqTableColumnAsnWrite@Base 6.1.20080302 + SeqTableColumnFree@Base 6.1.20080302 + SeqTableColumnInfoAsnRead@Base 6.1.20080302 + SeqTableColumnInfoAsnWrite@Base 6.1.20080302 + SeqTableColumnInfoFree@Base 6.1.20080302 + SeqTableColumnInfoNew@Base 6.1.20080302 + SeqTableColumnNew@Base 6.1.20080302 + SeqTableFree@Base 6.1.20080302 + SeqTableMultiDataAsnRead@Base 6.1.20080302 + SeqTableMultiDataAsnWrite@Base 6.1.20080302 + SeqTableMultiDataFree@Base 6.1.20080302 + SeqTableNew@Base 6.1.20080302 + SeqTableSingleDataAsnRead@Base 6.1.20080302 + SeqTableSingleDataAsnWrite@Base 6.1.20080302 + SeqTableSingleDataFree@Base 6.1.20080302 + SeqTableSparseIndexAsnRead@Base 6.1.20080302 + SeqTableSparseIndexAsnWrite@Base 6.1.20080302 + SeqTableSparseIndexFree@Base 6.1.20080302 + SeqToAwp@Base 6.1.20030421 + Seq_seqAsnRead@Base 6.1.20100808 + Seq_seqAsnWrite@Base 6.1.20100808 + Seq_seqFree@Base 6.1.20100808 + SeqfeatlistFree@Base 6.1.20030421 + SeqfeatlistFree_fromID@Base 6.1.20030421 + SequenceConstraintAsnRead@Base 6.1.20080302 + SequenceConstraintAsnWrite@Base 6.1.20080302 + SequenceConstraintFree@Base 6.1.20080302 + SequenceConstraintMolTypeConstraintAsnRead@Base 6.1.20080302 + SequenceConstraintMolTypeConstraintAsnWrite@Base 6.1.20080302 + SequenceConstraintMolTypeConstraintFree@Base 6.1.20080302 + SequenceConstraintNew@Base 6.1.20080302 + SequenceInfoFree@Base 6.1.20040204 + SequenceInfoNew@Base 6.1.20040204 + SequenceListAsnRead@Base 6.1.20080302 + SequenceListAsnWrite@Base 6.1.20080302 + SequenceListChoiceAsnRead@Base 6.1.20080302 + SequenceListChoiceAsnWrite@Base 6.1.20080302 + SequenceListChoiceFree@Base 6.1.20080302 + SequenceListFree@Base 6.1.20080302 + SequenceOfIntAsnRead@Base 6.1.20100808 + SequenceOfIntAsnWrite@Base 6.1.20100808 + SequenceOfIntFree@Base 6.1.20100808 + SequenceStringToSeqEntry@Base 6.1.20081116 + SequinEntryList@Base 6.1.20030421 + SerialNumberInString@Base 6.1.20030421 + SetAutoDefIDModifiers@Base 6.1.20100808 + SetBoolFromField@Base 6.1.20160908 + SetDBxrefForBioSource@Base 6.1.20100808 + SetDbtagString@Base 6.1.20120620 + SetDefLineTypeFromFieldString@Base 6.1.20160908 + SetDescriptorPropagate@Base 6.1.20100808 + SetDiscrepancyLevels@Base 6.1.20100808 + SetDiscrepancyReportTestsFromString@Base 6.1.20080302 + SetEmptyGeneticCodes@Base 6.1.20030421 + SetFieldValueForObject@Base 6.1.20081116 + SetFieldValueForObjectEx@Base 6.1.20090301 + SetGeneticCodeForEntry@Base 6.1.20030421 + SetIfpFeatCount@Base 6.1.20160908 + SetInt2FromFieldString@Base 6.1.20160908 + SetInt4FromFieldString@Base 6.1.20160908 + SetModifierIndices@Base 6.1.20160908 + SetObjectIdString@Base 6.1.20100808 + SetOnAllValsForDescStreamList@Base 6.1.20110713 + SetPartialsAfterSplittingAtGap@Base 6.1.20160908 + SetPhrapContigOrder@Base 6.1.20030421 + SetProductSequencePartials@Base 6.1.20080302 + SetPubclassOnPub@Base 6.1.20160908 + SetQualOnFeature@Base 6.1.20100808 + SetRNAProductString@Base 6.1.20100808 + SetRNAQualOnFeature@Base 6.1.20110713 + SetRNARefProductString@Base 6.1.20100808 + SetRequiredModifiers@Base 6.1.20080302 + SetSeqFeatData@Base 6.1.20030421 + SetSeqFeatProduct@Base 6.1.20030421 + SetSeqLocPartial@Base 6.1.20030421 + SetSeqLocPartialEx@Base 6.1.20110713 + SetSeqLocPartialSet@Base 6.1.20100808 + SetSourceQualInBioSource@Base 6.1.20080302 + SetStringInGBQualList@Base 6.1.20120620 + SetStringValue@Base 6.1.20081116 + SetStringsInValNodeStringList@Base 6.1.20090719 + SetStructuredCommentPrefixAndSuffix@Base 6.1.20160908 + SetSuppressedFeatures@Base 6.1.20160908 + SetncRNAClass@Base 6.1.20100808 + SettRNACodons_Recognized@Base 6.1.20160908 + SettmRNATagPeptide@Base 6.1.20100808 + SetupDataBuffer@Base 6.1.20030421 + SetupDataPanel@Base 6.1.20030421 + SetupMatchPatList@Base 6.1.20030421 + ShortWordList@Base 6.1.20080302 + ShouldBeAGBQual@Base 6.1.20110713 + ShouldExcludeSp@Base 6.1.20100808 + ShouldSuppressGBQual@Base 6.1.20110713 + ShouldUseOriginalID@Base 6.1.20160908 + ShowAlignNodeText2@Base 6.1.20030421 + ShowAlignNodeText@Base 6.1.20030421 + ShowAlignmentText@Base 6.1.20030421 + ShowNextPattern@Base 6.1.20030421 + ShowPrecPattern@Base 6.1.20030421 + ShowTextAlignFromAnnot2@Base 6.1.20030421 + ShowTextAlignFromAnnot3@Base 6.1.20030421 + ShowTextAlignFromAnnot@Base 6.1.20030421 + ShowTextAlignFromAnnotExtra@Base 6.1.20030421 + ShuffleUpdateBioseqList@Base 6.1.20120620 + ShuffleUpdateBioseqListWithIndex@Base 6.1.20120620 + SimpleReplaceAsnRead@Base 6.1.20110713 + SimpleReplaceAsnWrite@Base 6.1.20110713 + SimpleReplaceFree@Base 6.1.20110713 + SimpleReplaceNew@Base 6.1.20110713 + SimpleSeqAsnRead@Base 6.1.20030421 + SimpleSeqFree@Base 6.1.20030421 + SimpleSeqNew@Base 6.1.20030421 + SimpleSeqPrint@Base 6.1.20030421 + SomaticOriginAsnRead@Base 6.1.20110713 + SomaticOriginAsnWrite@Base 6.1.20110713 + SomaticOriginConditionAsnRead@Base 6.1.20110713 + SomaticOriginConditionAsnWrite@Base 6.1.20110713 + SomaticOriginConditionFree@Base 6.1.20110713 + SomaticOriginConditionNew@Base 6.1.20110713 + SomaticOriginFree@Base 6.1.20110713 + SomaticOriginNew@Base 6.1.20110713 + SortAlignNode@Base 6.1.20030421 + SortAlignPosition@Base 6.1.20030421 + SortAlignmentFeature@Base 6.1.20030421 + SortByChoice@Base 6.1.20160908 + SortByIntvalue@Base 6.1.20040616 + SortByPtrvalue@Base 6.1.20120620 + SortFeatNode@Base 6.1.20030421 + SortFeatureGBQuals@Base 6.1.20160908 + SortFieldsActionAsnRead@Base 6.1.20110713 + SortFieldsActionAsnWrite@Base 6.1.20110713 + SortFieldsActionFree@Base 6.1.20110713 + SortFieldsActionNew@Base 6.1.20110713 + SortFieldsForObject@Base 6.1.20110713 + SortOrganizeFeat@Base 6.1.20030421 + SortPairwiseAlignmentsByFirstSeqRange@Base 6.1.20081116 + SortQualOnFeature@Base 6.1.20110713 + SortSeqAlign@Base 6.1.20030421 + SortSeqAlignFromList@Base 6.1.20030421 + SortSeqEntryQualifiers@Base 6.1.20100808 + SortSuspectRuleSetByFind@Base 6.1.20110713 + SortSuspectRuleSetByFixTypeThenFind@Base 6.1.20110713 + SortTableRowByAnyColumn@Base 6.1.20110713 + SortUniqueFieldTypeList@Base 6.1.20081116 + SortValNode@Base 6.1.20030421 + SortVnpByChoiceAndPtrvalue@Base 6.1.20120620 + SortVnpByClickableItemChosen@Base 6.1.20081116 + SortVnpByClickableItemDescription@Base 6.1.20070822 + SortVnpByDiscrepancyDescription@Base 6.1.20081116 + SortVnpByDiscrepancyItemText@Base 6.1.20081116 + SortVnpByFieldDiffBiosampleIdThenFieldThenVal@Base 6.1.20160908 + SortVnpByFieldDiffField@Base 6.1.20160908 + SortVnpByFieldDiffIdThenField@Base 6.1.20160908 + SortVnpByFieldRule@Base 6.1.20100808 + SortVnpByFieldType@Base 6.1.20160908 + SortVnpByFieldTypeAndSourceQualifier@Base 6.1.20160908 + SortVnpByGlobalDiscrepancyString@Base 6.1.20080302 + SortVnpByGlobalDiscrepancyStringCaseSensitive@Base 6.1.20160908 + SortVnpByNaturalCI@Base 6.1.20120620 + SortVnpByNaturalCS@Base 6.1.20120620 + SortVnpByObject@Base 6.1.20090301 + SortVnpByPCRSetOrder@Base 6.1.20070822 + SortVnpByPCRSetSeq@Base 6.1.20070822 + SortVnpBySourceQualDesc@Base 6.1.20110713 + SortVnpByString@Base 6.1.20030421 + SortVnpByStringCI@Base 6.1.20090719 + SortVnpByStringCILCFirst@Base 6.1.20090719 + SortVnpByStringCIUCFirst@Base 6.1.20090719 + SortVnpByStringCS@Base 6.1.20090719 + SortVnpByUserField@Base 6.1.20100808 + SourceConstraintAsnRead@Base 6.1.20080302 + SourceConstraintAsnWrite@Base 6.1.20080302 + SourceConstraintFree@Base 6.1.20080302 + SourceConstraintNew@Base 6.1.20080302 + SourceQualChoiceAsnRead@Base 6.1.20080302 + SourceQualChoiceAsnWrite@Base 6.1.20080302 + SourceQualChoiceFree@Base 6.1.20080302 + SourceQualPairAsnRead@Base 6.1.20080302 + SourceQualPairAsnWrite@Base 6.1.20080302 + SourceQualPairFree@Base 6.1.20080302 + SourceQualPairNew@Base 6.1.20080302 + SourceQualTextValAsnRead@Base 6.1.20090301 + SourceQualTextValAsnWrite@Base 6.1.20090301 + SourceQualTextValFree@Base 6.1.20090301 + SourceQualTextValNew@Base 6.1.20090301 + SourceQualValChoiceAsnRead@Base 6.1.20090301 + SourceQualValChoiceAsnWrite@Base 6.1.20090301 + SourceQualValChoiceFree@Base 6.1.20090301 + SourceQualValSetAsnRead@Base 6.1.20090301 + SourceQualValSetAsnWrite@Base 6.1.20090301 + SourceQualValSetFree@Base 6.1.20090301 + SourceQualValsFromBioSourcePtr@Base 6.1.20090301 + SparseAlignAsnRead@Base 6.1.20070822 + SparseAlignAsnWrite@Base 6.1.20070822 + SparseAlignFree@Base 6.1.20070822 + SparseAlignNew@Base 6.1.20070822 + SparseSegAsnRead@Base 6.1.20070822 + SparseSegAsnWrite@Base 6.1.20070822 + SparseSegExtAsnRead@Base 6.1.20070822 + SparseSegExtAsnWrite@Base 6.1.20070822 + SparseSegExtFree@Base 6.1.20070822 + SparseSegExtNew@Base 6.1.20070822 + SparseSegFree@Base 6.1.20070822 + SparseSegNew@Base 6.1.20070822 + SpecialAbbreviationList@Base 6.1.20080302 + SpecialCharFind@Base 6.1.20080302 + SpecialCharFindWithContext@Base 6.1.20080302 + SpecialCharReplace@Base 6.1.20080302 + SpecialSeqAlignSetAsnRead@Base 6.1.20030421 + SpecialSeqAlignSetAsnWrite@Base 6.1.20030421 + SpecificHostFixListFree@Base 6.1.20070822 + SpellCallBack@Base 6.1.20030421 + SpellCheckSeqFeat@Base 6.1.20030421 + SpellCheckString@Base 6.1.20030421 + SpliceCheck@Base 6.1.20030421 + SpliceSiteAsnRead@Base 6.1.20061015 + SpliceSiteAsnWrite@Base 6.1.20061015 + SpliceSiteFree@Base 6.1.20061015 + SpliceSiteNew@Base 6.1.20061015 + SplicedExonAsnRead@Base 6.1.20061015 + SplicedExonAsnWrite@Base 6.1.20061015 + SplicedExonChunkAsnRead@Base 6.1.20061015 + SplicedExonChunkAsnWrite@Base 6.1.20061015 + SplicedExonChunkFree@Base 6.1.20061015 + SplicedExonFree@Base 6.1.20061015 + SplicedExonNew@Base 6.1.20061015 + SplicedSegAsnRead@Base 6.1.20061015 + SplicedSegAsnWrite@Base 6.1.20061015 + SplicedSegFree@Base 6.1.20061015 + SplicedSegModifierAsnRead@Base 6.1.20061015 + SplicedSegModifierAsnWrite@Base 6.1.20061015 + SplicedSegModifierFree@Base 6.1.20061015 + SplicedSegNew@Base 6.1.20061015 + SplitMultiValQual@Base 6.1.20030421 + SplitPCRPrimersByConstraints@Base 6.1.20110713 + SplitPCRPrimersByPosition@Base 6.1.20110713 + SplitStringAtSemicolon@Base 6.1.20160908 + SpreadGapsInDeltaSeq@Base 6.1.20030421 + SqnTagFind@Base 6.1.20030421 + SqnTagFindMultiple@Base 6.1.20100808 + SqnTagFindUnused@Base 6.1.20070822 + SqnTagFree@Base 6.1.20030421 + SqnTagParse@Base 6.1.20030421 + SquishBlocks@Base 6.1.20030421 + SrcLocFromGenome@Base 6.1.20081116 + SrcOrigFromOrigin@Base 6.1.20090301 + StdAuthListNamesPrint@Base 6.1.20030421 + StdDatePrint@Base 6.1.20030421 + StdFormatPrint@Base 6.1.20030421 + StdPrintOptionsFree@Base 6.1.20030421 + StdPrintOptionsNew@Base 6.1.20030421 + StdSegAsnRead@Base 6.1.20030421 + StdSegAsnWrite@Base 6.1.20030421 + StdSegFree@Base 6.1.20030421 + StdSegGapList@Base 6.1.20030421 + StdSegNew@Base 6.1.20030421 + StdSegStats@Base 6.1.20030421 + StdSeqLocPrint@Base 6.1.20030421 + StoreFeat@Base 6.1.20030421 + StoreFeatFree@Base 6.1.20030421 + StoreFeatTemp@Base 6.1.20030421 + StoreNAPubCit@Base 6.1.20030421 + StorePub@Base 6.1.20030421 + StrandCmp@Base 6.1.20030421 + StrandFromAlignNode@Base 6.1.20030421 + StrandFromStrandType@Base 6.1.20080302 + StrandNameFromStrand@Base 6.1.20080302 + StreamAsnForDescriptors@Base 6.1.20100808 + StreamCacheGetResidue@Base 6.1.20040505 + StreamCacheSetPosition@Base 6.1.20040505 + StreamCacheSetup@Base 6.1.20040505 + StringActionForObject@Base 6.1.20080302 + StringActionInEntity@Base 6.1.20080302 + StringConstraintAsnRead@Base 6.1.20080302 + StringConstraintAsnWrite@Base 6.1.20080302 + StringConstraintFree@Base 6.1.20080302 + StringConstraintFromFieldEdit@Base 6.1.20080302 + StringConstraintNew@Base 6.1.20080302 + StringConstraintSetAsnRead@Base 6.1.20110713 + StringConstraintSetAsnWrite@Base 6.1.20110713 + StringConstraintSetFree@Base 6.1.20110713 + StringContainsBodyOfWater@Base 6.1.20080302 + StringContainsUnbalancedParentheses@Base 6.1.20110713 + StringContainsUnderscore@Base 6.1.20110713 + StringForSeqMethod@Base 6.1.20030421 + StringForSeqTech@Base 6.1.20030421 + StringHasOrgModPrefix@Base 6.1.20160908 + StringHasPrefix@Base 6.1.20160908 + StringIsJustQuotes@Base 6.1.20040204 + StringMayContainPlural@Base 6.1.20110713 + StringSearchInBioseq@Base 6.1.20030421 + StringToLower@Base 6.1.20110713 + StringToSeqEntry@Base 6.1.20030421 + StringsAreEquivalent@Base 6.1.20060507 + StripAllSpaces@Base 6.1.20040204 + StripFeatIDXrefAsnFilter@Base 6.1.20051206 + StripGeneRnaPcrAsnFilter@Base 6.1.20090719 + StripLocusFromSeqLoc@Base 6.1.20030421 + StripNewFeatMolInfoFieldsAsnFilter@Base 6.1.20081116 + StripOrgNamePgcodeAsnFilter@Base 6.1.20100808 + StripPCRPrimerAsnFilter@Base 6.1.20081116 + StripSeqDataGapAsnFilter@Base 6.1.20070822 + StripSeqFeatSupportAsnFilter@Base 6.1.20110713 + StripSuffixFromAuthor@Base 6.1.20110713 + StructuredCommentDbnameFromString@Base 6.1.20110713 + StructuredCommentFieldAsnRead@Base 6.1.20081116 + StructuredCommentFieldAsnWrite@Base 6.1.20081116 + StructuredCommentFieldFree@Base 6.1.20081116 + StructuredCommentFieldPairAsnRead@Base 6.1.20081116 + StructuredCommentFieldPairAsnWrite@Base 6.1.20081116 + StructuredCommentFieldPairFree@Base 6.1.20081116 + StructuredCommentFieldPairNew@Base 6.1.20081116 + StructuredCommentPrefixForKeyword@Base 6.1.20160908 + SubSourceAsnRead@Base 6.1.20030421 + SubSourceAsnWrite@Base 6.1.20030421 + SubSourceFree@Base 6.1.20030421 + SubSourceNew@Base 6.1.20030421 + SubSourceSetAsnRead@Base 6.1.20030421 + SubSourceSetAsnWrite@Base 6.1.20030421 + SubSourceSetFree@Base 6.1.20030421 + SubSourceSetMatch@Base 6.1.20050605 + SubSourceText@Base 6.1.20081116 + SubmitAsnLoad@Base 6.1.20030421 + SubmitBlockAsnRead@Base 6.1.20030421 + SubmitBlockAsnWrite@Base 6.1.20030421 + SubmitBlockFree@Base 6.1.20030421 + SubmitBlockLabel@Base 6.1.20030421 + SubmitBlockMatch@Base 6.1.20050605 + SubmitBlockNew@Base 6.1.20030421 + SummarizeAECRAction@Base 6.1.20100808 + SummarizeAddDescriptorListAction@Base 6.1.20120620 + SummarizeApplyTableAction@Base 6.1.20120620 + SummarizeAuthorFixAction@Base 6.1.20110713 + SummarizeAutodefAction@Base 6.1.20100808 + SummarizeConstraint@Base 6.1.20100808 + SummarizeConstraintSet@Base 6.1.20100808 + SummarizeCreateTSAIDsAction@Base 6.1.20120620 + SummarizeExistingText@Base 6.1.20100808 + SummarizeFeatQual@Base 6.1.20090301 + SummarizeFeatureStrandedness@Base 6.1.20110713 + SummarizeFieldType@Base 6.1.20080302 + SummarizeFixCapsAction@Base 6.1.20110713 + SummarizeFixFormatAction@Base 6.1.20110713 + SummarizeFixPubCapsAction@Base 6.1.20100808 + SummarizeFixSetsAction@Base 6.1.20120620 + SummarizeFixType@Base 6.1.20110713 + SummarizeMacroAction@Base 6.1.20120620 + SummarizeMolinfoBlockAction@Base 6.1.20110713 + SummarizeParseAction@Base 6.1.20100808 + SummarizeParseDst@Base 6.1.20100808 + SummarizeParseSrc@Base 6.1.20100808 + SummarizePerformAutofixAction@Base 6.1.20120620 + SummarizePropagateSequenceTechnology@Base 6.1.20120620 + SummarizeRemoveDescriptorAction@Base 6.1.20100808 + SummarizeRemoveDuplicateFeaturesAction@Base 6.1.20110713 + SummarizeRemoveSequencesAction@Base 6.1.20120620 + SummarizeReplaceFunc@Base 6.1.20110713 + SummarizeReplaceRule@Base 6.1.20110713 + SummarizeRnaType@Base 6.1.20081116 + SummarizeSearchFunc@Base 6.1.20110713 + SummarizeSortFieldsAction@Base 6.1.20110713 + SummarizeSourceQual@Base 6.1.20080302 + SummarizeStringConstraint@Base 6.1.20110713 + SummarizeStringConstraintEx@Base 6.1.20120620 + SummarizeSuspectRule@Base 6.1.20110713 + SummarizeSuspectRuleEx@Base 6.1.20120620 + SummarizeTextPortion@Base 6.1.20100808 + SummarizeTextTransform@Base 6.1.20110713 + SummarizeUpdateSequencesAction@Base 6.1.20120620 + SummarizeWordSubstitution@Base 6.1.20110713 + SuspectRuleAsnRead@Base 6.1.20110713 + SuspectRuleAsnWrite@Base 6.1.20110713 + SuspectRuleFree@Base 6.1.20110713 + SuspectRuleNew@Base 6.1.20110713 + SuspectRuleSetAsnRead@Base 6.1.20110713 + SuspectRuleSetAsnWrite@Base 6.1.20110713 + SuspectRuleSetFree@Base 6.1.20110713 + SwapActionAsnRead@Base 6.1.20080302 + SwapActionAsnWrite@Base 6.1.20080302 + SwapActionFree@Base 6.1.20080302 + SwapActionNew@Base 6.1.20080302 + T3DataAsnRead@Base 6.1.20041020 + T3DataAsnWrite@Base 6.1.20041020 + T3DataFree@Base 6.1.20041020 + T3DataNew@Base 6.1.20041020 + T3ErrorAsnRead@Base 6.1.20041020 + T3ErrorAsnWrite@Base 6.1.20041020 + T3ErrorFree@Base 6.1.20041020 + T3ErrorNew@Base 6.1.20041020 + T3RefreshFlagsAsnRead@Base 6.1.20041020 + T3RefreshFlagsAsnWrite@Base 6.1.20041020 + T3RefreshFlagsFree@Base 6.1.20041020 + T3RefreshFlagsNew@Base 6.1.20041020 + T3ReplyAsnRead@Base 6.1.20041020 + T3ReplyAsnWrite@Base 6.1.20041020 + T3ReplyFree@Base 6.1.20041020 + T3RequestAsnRead@Base 6.1.20041020 + T3RequestAsnWrite@Base 6.1.20041020 + T3RequestFree@Base 6.1.20041020 + T3StatusFlagsAsnRead@Base 6.1.20041020 + T3StatusFlagsAsnWrite@Base 6.1.20041020 + T3StatusFlagsFree@Base 6.1.20041020 + T3StatusFlagsNew@Base 6.1.20041020 + TSeqAsnRead@Base 6.1.20030421 + TSeqAsnWrite@Base 6.1.20030421 + TSeqFree@Base 6.1.20030421 + TSeqNew@Base 6.1.20030421 + TSeqSetAsnRead@Base 6.1.20030421 + TSeqSetAsnWrite@Base 6.1.20030421 + TSeqSetFree@Base 6.1.20030421 + TabColumnConfigCopy@Base 6.1.20080302 + TabColumnConfigFree@Base 6.1.20080302 + TabColumnConfigListCopy@Base 6.1.20080302 + TabColumnConfigListFree@Base 6.1.20080302 + TabColumnConfigNew@Base 6.1.20080302 + TabColumnConfigReset@Base 6.1.20110713 + TabToColumn@Base 6.1.20030421 + TableMatchAsnRead@Base 6.1.20120620 + TableMatchAsnWrite@Base 6.1.20120620 + TableMatchFree@Base 6.1.20120620 + TableMatchNew@Base 6.1.20120620 + TableMatchTypeAsnRead@Base 6.1.20120620 + TableMatchTypeAsnWrite@Base 6.1.20120620 + TableMatchTypeFree@Base 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Taxon3GetTaxFixList@Base 6.1.20090301 + Taxon3GetTaxIdByName@Base 6.1.20041020 + Taxon3GetTaxIdByOrgRef@Base 6.1.20041020 + Taxon3ReplaceOrgInSeqEntry@Base 6.1.20041020 + Taxon3ReplaceOrgInSeqEntryEx@Base 6.1.20100808 + Taxon3ReplyAsnRead@Base 6.1.20041020 + Taxon3ReplyAsnWrite@Base 6.1.20041020 + Taxon3ReplyFree@Base 6.1.20041020 + Taxon3ReplyNew@Base 6.1.20041020 + Taxon3RequestAsnRead@Base 6.1.20041020 + Taxon3RequestAsnWrite@Base 6.1.20041020 + Taxon3RequestFree@Base 6.1.20041020 + Taxon3RequestNew@Base 6.1.20041020 + Taxon3ValidateSpecificHostsInSeqEntry@Base 6.1.20081116 + TechFromTechName@Base 6.1.20120620 + TechFromTechniqueType@Base 6.1.20080302 + TechNameFromTech@Base 6.1.20080302 + TeenyBlock@Base 6.1.20030421 + TestFeatOverlap@Base 6.1.20030421 + TestFindBestQualCombo@Base 6.1.20081116 + TestLatLonForCountry@Base 6.1.20070822 + TextAlignBufFind@Base 6.1.20030421 + TextAnnotIdAsnRead@Base 6.1.20081116 + TextAnnotIdAsnWrite@Base 6.1.20081116 + TextAnnotIdFree@Base 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+ TitleFree@Base 6.1.20030421 + TitleMatch@Base 6.1.20030421 + TitleMsg2AsnRead@Base 6.1.20070822 + TitleMsg2AsnWrite@Base 6.1.20070822 + TitleMsg2Free@Base 6.1.20070822 + TitleMsg2New@Base 6.1.20070822 + TitleMsgList2AsnRead@Base 6.1.20070822 + TitleMsgList2AsnWrite@Base 6.1.20070822 + TitleMsgList2Free@Base 6.1.20070822 + TitleMsgList2New@Base 6.1.20070822 + TokenizeTRnaString@Base 6.1.20030421 + TooManyInferenceAccessions@Base 6.1.20110713 + TopologyFromTopologyType@Base 6.1.20080302 + TopologyNameFromTopology@Base 6.1.20080302 + TraceArchiveGapStringFromACESequence@Base 6.1.20081116 + TransTableFree@Base 6.1.20030421 + TransTableFreeAll@Base 6.1.20030421 + TransTableNew@Base 6.1.20030421 + TransTableProcessBioseq@Base 6.1.20030421 + TransTableTranslateCdRegion@Base 6.1.20030421 + TransTableTranslateCdRegionEx@Base 6.1.20040505 + TransTableTranslateSeqLoc@Base 6.1.20030421 + TranslateCdRegion@Base 6.1.20030421 + TranslationConstraintAsnRead@Base 6.1.20110713 + TranslationConstraintAsnWrite@Base 6.1.20110713 + TranslationConstraintFree@Base 6.1.20110713 + TranslationConstraintNew@Base 6.1.20110713 + TranslationFastaStream@Base 6.1.20090301 + TranslationFastaStreamEx@Base 6.1.20120620 + TrimLocInSegment@Base 6.1.20030421 + TrimNsFromNucsInSeqEntry@Base 6.1.20160908 + TrimPrimerSeqJunkInSeqEntry@Base 6.1.20100808 + TrimQualityScores@Base 6.1.20060301 + TrimSeqGraph@Base 6.1.20060301 + TrimSpacesAndJunkFromEnds@Base 6.1.20030421 + TrimSpacesAndSemicolons@Base 6.1.20030421 + TrimStopsFromCompleteCodingRegions@Base 6.1.20100808 + TruncateAuthorMiddleInitials@Base 6.1.20110713 + TwoStringHashFree@Base 6.1.20110713 + TxGetQueryIdFromSeqAlign@Base 6.1.20030421 + TxGetSubjectIdFromSeqAlign@Base 6.1.20030421 + TxinitAsnRead@Base 6.1.20030421 + TxinitAsnWrite@Base 6.1.20030421 + TxinitFree@Base 6.1.20030421 + TxinitNew@Base 6.1.20030421 + TypeMaterialIsValid@Base 6.1.20160908 + UABuildDescriptor2@Base 6.1.20030421 + UABuildDescriptor@Base 6.1.20030421 + UABuildDescriptorForBlockEditor@Base 6.1.20030421 + UAMgrDelUAMsg@Base 6.1.20030421 + UAMgrGetNextUAbit@Base 6.1.20030421 + UAMgrIntUAMsg@Base 6.1.20030421 + UAMgrUAMsgGetInfo@Base 6.1.20030421 + UDV_BigDecodeIdxFeat@Base 6.1.20030421 + UDV_BigEncodeIdxFeat@Base 6.1.20030421 + UDV_ComputeBspCoordRangeinPGP@Base 6.1.20030421 + UDV_ConvertFeatContext@Base 6.1.20030421 + UDV_CreateOneFeatureIndex@Base 6.1.20030421 + UDV_CreateParaGList@Base 6.1.20030421 + UDV_DecodeIdxFeat@Base 6.1.20030421 + UDV_EncodeIdxFeat@Base 6.1.20030421 + UDV_FreeListParaG@Base 6.1.20030421 + UDV_GetBspRangeinPGPList@Base 6.1.20030421 + UDV_GetStrandinPGP@Base 6.1.20030421 + UDV_GetStrandinPGPList@Base 6.1.20030421 + UDV_IsTranslationNeeded@Base 6.1.20030421 + UDV_MsaTxtDispFree@Base 6.1.20030421 + UDV_MsaTxtDispNew@Base 6.1.20030421 + UDV_ParaGFTableFeatures@Base 6.1.20030421 + UDV_PopParaGFeaturesEx@Base 6.1.20030421 + UDV_PopulateParaGFeatures@Base 6.1.20030421 + UDV_ReadBspDataForViewer@Base 6.1.20030421 + UDV_Read_Sequence@Base 6.1.20030421 + UDV_Read_SequenceEx@Base 6.1.20030421 + UDV_RevertBioSeqCoord@Base 6.1.20030421 + UniqueIntValNode@Base 6.1.20050429 + UniqueLocalId@Base 6.1.20030421 + UniquePtrValNode@Base 6.1.20120620 + UniquePubs@Base 6.1.20030421 + UniqueStringValNodeCI@Base 6.1.20090719 + UniqueStringValNodeCS@Base 6.1.20090719 + UniqueValNode@Base 6.1.20030421 + UniqueVnpByPCRSetSeq@Base 6.1.20070822 + UnitTestSeqLocCompare@Base 6.1.20100808 + UnlockFarComponents@Base 6.1.20030421 + UpdateAceFileIds@Base 6.1.20081116 + UpdateContigIds@Base 6.1.20090301 + UpdateLocalId@Base 6.1.20030421 + UpdateProteinTitle@Base 6.1.20090719 + UpdateReplacedECNumbers@Base 6.1.20120620 + UpdateReplacedECNumbersEx@Base 6.1.20120620 + UpdateReplacedEcNumbersActionAsnRead@Base 6.1.20160908 + UpdateReplacedEcNumbersActionAsnWrite@Base 6.1.20160908 + UpdateReplacedEcNumbersActionFree@Base 6.1.20160908 + UpdateReplacedEcNumbersActionNew@Base 6.1.20160908 + UpdateSequencesActionAsnRead@Base 6.1.20120620 + UpdateSequencesActionAsnWrite@Base 6.1.20120620 + UpdateSequencesActionFree@Base 6.1.20120620 + UpdateSequencesActionNew@Base 6.1.20120620 + UpdateTitle@Base 6.1.20030421 + UrlEncodeString@Base 6.1.20120620 + UseGIforLocus@Base 6.1.20030421 + UseLocalAsnloadDataAndErrMsg@Base 6.1.20030421 + UseOrgModifier@Base 6.1.20080302 + UseSubSrcModifier@Base 6.1.20120620 + UserFieldAsnRead@Base 6.1.20030421 + UserFieldAsnWrite@Base 6.1.20030421 + UserFieldFree@Base 6.1.20030421 + UserFieldNew@Base 6.1.20030421 + UserFieldSort@Base 6.1.20120620 + UserFormatAsnRead@Base 6.1.20030421 + UserFormatAsnWrite@Base 6.1.20030421 + UserFormatFree@Base 6.1.20030421 + UserFormatNew@Base 6.1.20030421 + UserObjectAsnRead@Base 6.1.20030421 + UserObjectAsnWrite@Base 6.1.20030421 + UserObjectFree@Base 6.1.20030421 + UserObjectNew@Base 6.1.20030421 + ValNodeAddPointerToEnd@Base 6.1.20100808 + ValNodeAddPointerToFront@Base 6.1.20100808 + ValNodeCopyPtr@Base 6.1.20081116 + ValNodeCopyStrToHead@Base 6.1.20040204 + ValNodeDbtagMatch@Base 6.1.20120620 + ValNodeDupIntList@Base 6.1.20100808 + ValNodeDupStringList@Base 6.1.20080302 + ValNodeFind@Base 6.1.20030421 + ValNodeFreeType@Base 6.1.20030421 + ValNodeLinkToEnd@Base 6.1.20110713 + ValNodeReverse@Base 6.1.20081116 + ValNodeSeqIdCopy@Base 6.1.20110713 + ValNodeSeqIdFree@Base 6.1.20110713 + ValNodeSeqIdListCopy@Base 6.1.20110713 + ValNodeSeqIdListDup@Base 6.1.20030421 + ValNodeSeqIdListFree@Base 6.1.20110713 + ValNodeSeqIdListToSeqIdList@Base 6.1.20110713 + ValNodeSeqIdMatch@Base 6.1.20110713 + ValNodeSeqIdName@Base 6.1.20110713 + ValNodeSortBlock@Base 6.1.20160908 + ValNodeStringListMatch@Base 6.1.20120620 + ValidAminoAcid@Base 6.1.20030421 + ValidErr@Base 6.1.20030421 + ValidStructClear@Base 6.1.20030421 + ValidStructFree@Base 6.1.20030421 + ValidStructNew@Base 6.1.20030421 + ValidateAAImpFeat@Base 6.1.20030421 + ValidateACEFileAgainstSeqEntry@Base 6.1.20081116 + ValidateAccession@Base 6.1.20030421 + ValidateAccn@Base 6.1.20030421 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VarRefDataFree@Base 6.1.20100808 + VarRefDataSetAsnRead@Base 6.1.20100808 + VarRefDataSetAsnWrite@Base 6.1.20100808 + VarRefDataSetFree@Base 6.1.20100808 + VarRefDataSetNew@Base 6.1.20100808 + VariantPropertiesAsnRead@Base 6.1.20100808 + VariantPropertiesAsnWrite@Base 6.1.20100808 + VariantPropertiesFree@Base 6.1.20100808 + VariantPropertiesNew@Base 6.1.20100808 + VariationInstAsnRead@Base 6.1.20100808 + VariationInstAsnWrite@Base 6.1.20100808 + VariationInstFree@Base 6.1.20100808 + VariationInstNew@Base 6.1.20100808 + VariationRefAsnRead@Base 6.1.20100808 + VariationRefAsnWrite@Base 6.1.20100808 + VariationRefFree@Base 6.1.20100808 + VariationRefNew@Base 6.1.20100808 + VecScreenAsynchronousRequest@Base 6.1.20030421 + VecScreenCheckQueue@Base 6.1.20030421 + VecScreenOpenConnection@Base 6.1.20030421 + VecScreenWaitForReply@Base 6.1.20030421 + ViewMgr_Add@Base 6.1.20030421 + ViewMgr_AddTransform@Base 6.1.20030421 + ViewMgr_Attach@Base 6.1.20030421 + ViewMgr_ClearTrans@Base 6.1.20030421 + ViewMgr_Delete@Base 6.1.20030421 + ViewMgr_FreeInfo@Base 6.1.20030421 + ViewMgr_GetBegin@Base 6.1.20030421 + ViewMgr_GetBeginIndexed@Base 6.1.20030421 + ViewMgr_GetRow@Base 6.1.20030421 + ViewMgr_GetTarget@Base 6.1.20030421 + ViewMgr_IsIBM@Base 6.1.20030421 + ViewMgr_IsNeat@Base 6.1.20030421 + ViewMgr_MakeMultiple@Base 6.1.20030421 + ViewMgr_New@Base 6.1.20030421 + ViewMgr_RegisterFunc@Base 6.1.20030421 + ViewMgr_RemoveSA@Base 6.1.20030421 + ViewMgr_SetBegin@Base 6.1.20030421 + ViewMgr_SetHidden@Base 6.1.20030421 + ViewMgr_SetRow@Base 6.1.20030421 + ViewMgr_TRow2VRow@Base 6.1.20030421 + ViewMgr_Update2@Base 6.1.20030421 + ViewMgr_Update@Base 6.1.20030421 + ViewMgr_VRow2TRow@Base 6.1.20030421 + VisitAlignmentsInSep@Base 6.1.20030421 + VisitAlignmentsInSet@Base 6.1.20030421 + VisitAlignmentsOnBsp@Base 6.1.20030421 + VisitAlignmentsOnSap@Base 6.1.20030421 + VisitAlignmentsOnSep@Base 6.1.20030421 + VisitAlignmentsOnSet@Base 6.1.20030421 + VisitAllUserObjectsInUop@Base 6.1.20110713 + VisitAnnotsInSep@Base 6.1.20030421 + VisitAnnotsInSet@Base 6.1.20030421 + VisitAnnotsOnBsp@Base 6.1.20030421 + VisitAnnotsOnSep@Base 6.1.20030421 + VisitAnnotsOnSet@Base 6.1.20030421 + VisitAuthorsInPub@Base 6.1.20081116 + VisitBioSourcesInSep@Base 6.1.20030421 + VisitBioSourcesInSet@Base 6.1.20030421 + VisitBioSourcesOnBsp@Base 6.1.20030421 + VisitBioSourcesOnSep@Base 6.1.20030421 + VisitBioSourcesOnSet@Base 6.1.20030421 + VisitBioseqsInSep@Base 6.1.20030421 + VisitBioseqsInSet@Base 6.1.20030421 + VisitDescriptorsInSep@Base 6.1.20030421 + VisitDescriptorsInSet@Base 6.1.20030421 + VisitDescriptorsOnBsp@Base 6.1.20030421 + VisitDescriptorsOnSep@Base 6.1.20030421 + VisitDescriptorsOnSet@Base 6.1.20030421 + VisitElementsInSep@Base 6.1.20030421 + VisitFeaturesInSep@Base 6.1.20030421 + VisitFeaturesInSet@Base 6.1.20030421 + VisitFeaturesOnBsp@Base 6.1.20030421 + VisitFeaturesOnSap@Base 6.1.20030421 + VisitFeaturesOnSep@Base 6.1.20030421 + VisitFeaturesOnSet@Base 6.1.20030421 + 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6.1.20170106 + regulatoryClassList@Base 6.1.20160908 + remove_annot@Base 6.1.20030421 + remove_feat@Base 6.1.20030421 + remove_node@Base 6.1.20030421 + replace_bytestore_data@Base 6.1.20030421 + reverse_string@Base 6.1.20030421 + s_AddPeriodToEnd@Base 6.1.20040204 + s_AuthorFixActionNames@Base 6.1.20110713 + s_OtherGetValue@Base 6.1.20030421 + s_QuantityWords@Base 6.1.20100808 + s_RemovePeriodFromEnd@Base 6.1.20040204 + s_SpecialPubFieldWords@Base 6.1.20100808 + s_tRNAGeneFromProduct@Base 6.1.20090301 + s_witch@Base 6.1.20030421 + secStrText@Base 6.1.20040204 + select_overlap_loc@Base 6.1.20030421 + seqid_name@Base 6.1.20030421 + seqid_to_string@Base 6.1.20030421 + seqloc2fuzzloc@Base 6.1.20030421 + ses_to_ss@Base 6.1.20030421 + sesp_to_slp@Base 6.1.20030421 + set_flags@Base 6.1.20030421 + set_option_for_collect_align@Base 6.1.20030421 + set_seqnot_visible@Base 6.1.20030421 + set_seqvisible@Base 6.1.20030421 + setposition_toses@Base 6.1.20030421 + setposition_tossp@Base 6.1.20030421 + showfastagap_fromalign@Base 6.1.20030421 + siteList@Base 6.1.20040204 + slp_list_len@Base 6.1.20030421 + sort_align_by_score@Base 6.1.20030421 + spec_wd_cnt@Base 6.1.20160908 + spec_words@Base 6.1.20160908 + ss_to_ses@Base 6.1.20030421 + start_new_stack@Base 6.1.20030421 + stringhasnochar@Base 6.1.20030421 + stringhasnocharplus@Base 6.1.20030421 + subSourceToSourceIdx@Base 6.1.20040204 + subsource_aliases@Base 6.1.20070822 + subtype@Base 6.1.20030421 + succeed_ssp@Base 6.1.20030421 + swap@Base 6.1.20030421 + tRNACountFeaturesAndFindDups@Base 6.1.20070822 + tRNAFindBadLength@Base 6.1.20070822 + tail_www@Base 6.1.20030421 + tie_next@Base 6.1.20030421 + tie_qual@Base 6.1.20030421 + tloc_offset@Base 6.1.20030421 + to_lower@Base 6.1.20030421 + trnaMatchFree@Base 6.1.20160908 + trnaMatchNew@Base 6.1.20160908 + tx_fprintf@Base 6.1.20031028 + update_seq_loc@Base 6.1.20030421 + use_multiple_dimension@Base 6.1.20030421 + water_onedegree@Base 6.1.20110713 + write_out_put@Base 6.1.20030421 + www_PrintComment@Base 6.1.20030421 + www_accession@Base 6.1.20030421 + www_coded_by@Base 6.1.20030421 + www_db_xref@Base 6.1.20030421 + www_dbsource@Base 6.1.20030421 + www_extra_acc@Base 6.1.20030421 + www_featkey@Base 6.1.20030421 + www_featloc@Base 6.1.20030421 + www_gcode@Base 6.1.20030421 + www_genpept_gi@Base 6.1.20030421 + www_map@Base 6.1.20030421 + www_muid@Base 6.1.20030421 + www_note_gi@Base 6.1.20030421 + www_organism@Base 6.1.20030421 + www_protein_id@Base 6.1.20030421 + www_source@Base 6.1.20030421 + www_taxid@Base 6.1.20030421 + www_xref@Base 6.1.20030421 + www_xref_button@Base 6.1.20030421 + x_ParFlat_GBFeat@Base 6.1.20030421 + x_ParFlat_GBQual_names@Base 6.1.20030421 +libncbitool.so.6 libncbi6 #MINVER# + A@Base 6.1.20030421 + AA20alpha@Base 6.1.20030421 + ACT_BuildProfile@Base 6.1.20030421 + ACT_CalcScore@Base 6.1.20030421 + ACT_CleanUpAlignments@Base 6.1.20030421 + ACT_CompareProfileConfidence@Base 6.1.20030421 + ACT_EstimateConfidence@Base 6.1.20030421 + ACT_FindCpG@Base 6.1.20030421 + ACT_FindPeakScores@Base 6.1.20030421 + ACT_FindPiece@Base 6.1.20030421 + ACT_GetNthSeqRangeInSASet@Base 6.1.20030421 + ACT_GetResidue@Base 6.1.20030421 + ACT_MakeProfileFromSA@Base 6.1.20030421 + ACT_PlaceByScore@Base 6.1.20030421 + ACT_ProfileFree@Base 6.1.20030421 + ACT_ProfileNew@Base 6.1.20030421 + ACT_ProfileSetFree@Base 6.1.20030421 + ACT_RemoveInconsistentAlnsFromSet@Base 6.1.20050429 + ACT_ScoreProfile@Base 6.1.20030421 + ACT_SortAndTruncate@Base 6.1.20030421 + ACT_SortProfilesByConfidence@Base 6.1.20030421 + ALIGN@Base 6.1.20030421 + AStringIgnoreSpaceCmp@Base 6.1.20030421 + AcknowledgeBlastQuery@Base 6.1.20030421 + AddReplaceQual@Base 6.1.20030421 + AddSeqLocToCodonTable@Base 6.1.20030421 + AddToList@Base 6.1.20030421 + AdjustAllTheoreticalCoordinates@Base 6.1.20030421 + AdjustOffsetsInBLASTHitList@Base 6.1.20030421 + AdjustTheoreticalCoordinates@Base 6.1.20030421 + AlignmRNA2genomic@Base 6.1.20030421 + AlnMgr2TruncateSAP@Base 6.1.20030421 + AlphaCopy@Base 6.1.20030421 + AlphaFree@Base 6.1.20030421 + AluFeat@Base 6.1.20030421 + AnnotateRegionsFromCDD@Base 6.1.20030421 + B2SPssmCleanUpSearch@Base 6.1.20030421 + B2SPssmMultipleQueries@Base 6.1.20030421 + B2SPssmOnTheFly@Base 6.1.20030421 + B2SPssmOnTheFlyByLoc@Base 6.1.20030421 + B2SPssmSetupSearch@Base 6.1.20030421 + B@Base 6.1.20030421 + BAND_LOCAL_ALIGN@Base 6.1.20030421 + BLASTAddBlastDBTitleToSeqAnnot@Base 6.1.20030421 + BLASTAddBlastDBTitleToSeqAnnotEx@Base 6.1.20030421 + BLASTCalculateSearchSpace@Base 6.1.20030421 + BLASTCheckHSPInclusion@Base 6.1.20051206 + BLASTFileFunc@Base 6.1.20030421 + BLASTFilterOverlapRegions@Base 6.1.20030421 + BLASTGetDatabaseTitleFromSeqAnnot@Base 6.1.20030421 + BLASTHSPSegmentFromSeqAlign@Base 6.1.20030421 + BLASTHspToStdSeg@Base 6.1.20030421 + BLASTOptionDelete@Base 6.1.20030421 + BLASTOptionNew@Base 6.1.20030421 + BLASTOptionNewEx@Base 6.1.20030421 + BLASTOptionSetGapParams@Base 6.1.20030421 + BLASTOptionValidate@Base 6.1.20030421 + BLASTOptionValidateEx@Base 6.1.20030421 + BLASTPerform2PassSearch@Base 6.1.20030421 + BLASTPerformFinalSearch@Base 6.1.20030421 + BLASTPerformSearch@Base 6.1.20030421 + BLASTPerformSearchWithReadDb@Base 6.1.20030421 + BLASTPostSearchLogic@Base 6.1.20030421 + BLASTResultFreeHsp@Base 6.1.20030421 + BLASTResultHitlistFree@Base 6.1.20030421 + BLASTResultHitlistFreeEx@Base 6.1.20030421 + BLASTResultHitlistNew@Base 6.1.20030421 + BLASTResultHspScoreCmp@Base 6.1.20050429 + BLASTResultsStructDelete@Base 6.1.20030421 + BLASTResultsStructNew@Base 6.1.20030421 + BLASTSetUpSearch@Base 6.1.20030421 + BLASTSetUpSearchByLoc@Base 6.1.20030421 + BLASTSetUpSearchByLocWithReadDb@Base 6.1.20030421 + BLASTSetUpSearchByLocWithReadDbEx@Base 6.1.20030421 + BLASTSetUpSearchInternalByLoc@Base 6.1.20030421 + BLASTSetUpSearchWithReadDb@Base 6.1.20030421 + BLASTSetUpSearchWithReadDbEx@Base 6.1.20030421 + BLASTSetUpSearchWithReadDbInternal@Base 6.1.20030421 + BLASTSetUpSearchWithReadDbInternalEx@Base 6.1.20030421 + BLASTSetUpSearchWithReadDbInternalMult@Base 6.1.20030421 + BLASTSubjectInfoDestruct@Base 6.1.20030421 + BLASTSubjectInfoNew@Base 6.1.20030421 + BLASTUpdateSeqIdInSeqInt@Base 6.1.20030421 + BLAST_ExtendWordDestruct@Base 6.1.20030421 + BLAST_ExtendWordNew@Base 6.1.20030421 + BLAST_ExtendWordParamsNew@Base 6.1.20030421 + BLAST_HSPFree@Base 6.1.20040204 + BLAST_MatrixDestruct@Base 6.1.20030421 + BLAST_MatrixFetch@Base 6.1.20030421 + BLAST_MatrixFill@Base 6.1.20030421 + BLAST_ScoreBlkDestruct@Base 6.1.20030421 + BLAST_ScoreBlkNew@Base 6.1.20030421 + BLAST_Wizard@Base 6.1.20030421 + BLAST_WizardOptionsBlkDone@Base 6.1.20030421 + BLAST_WizardOptionsBlkInit@Base 6.1.20030421 + BLAST_WizardOptionsMaskInit@Base 6.1.20030421 + BLAST_WordFinderDestruct@Base 6.1.20030421 + BLAST_WordFinderNew@Base 6.1.20030421 + BSComparison@Base 6.1.20030421 + BSComparisonEx@Base 6.1.20030421 + BUCKETS@Base 6.1.20030421 + BXMLBuildOneIteration@Base 6.1.20030421 + BXMLBuildOneQueryIteration@Base 6.1.20030421 + BXMLBuildStatistics@Base 6.1.20030421 + BXMLCreateBlastOutputHead@Base 6.1.20030421 + BXMLGetHspFromSeqAlign@Base 6.1.20030421 + BXMLGetSeqLineForDenseDiag@Base 6.1.20030421 + BXMLGetSeqLineForDenseSeg@Base 6.1.20030421 + BXMLGetSeqLineForStdSeg@Base 6.1.20030421 + BXMLGetSeqLines@Base 6.1.20030421 + BXMLPrintMultiQueryOutput@Base 6.1.20030421 + BXMLPrintOutput@Base 6.1.20030421 + BXMLSeqAlignToHits@Base 6.1.20030421 + BiasScoreBioseq@Base 6.1.20030421 + BinarySearchInt4@Base 6.1.20030421 + BioSourceCommon@Base 6.1.20030421 + BioSourceMerge@Base 6.1.20030421 + BioSourceToGeneticCode@Base 6.1.20030421 + BioseqBlastEngine@Base 6.1.20030421 + BioseqBlastEngineByLoc@Base 6.1.20030421 + BioseqBlastEngineByLocEx@Base 6.1.20030421 + BioseqBlastEngineByLocWithCallback@Base 6.1.20030421 + BioseqBlastEngineByLocWithCallbackMult@Base 6.1.20030421 + BioseqBlastEngineCore@Base 6.1.20030421 + BioseqBlastEngineEx@Base 6.1.20030421 + BioseqBlastEngineWithCallback@Base 6.1.20030421 + BioseqBlastEngineWithCallbackMult@Base 6.1.20030421 + BioseqDust@Base 6.1.20030421 + BioseqDustEx@Base 6.1.20070822 + BioseqDustWrap@Base 6.1.20030421 + BioseqHitRangeEngine@Base 6.1.20030421 + BioseqHitRangeEngineByLoc@Base 6.1.20030421 + BioseqHitRangeEngineCore@Base 6.1.20030421 + BioseqMegaBlastEngine@Base 6.1.20030421 + BioseqMegaBlastEngineByLoc@Base 6.1.20030421 + BioseqMegaBlastEngineCore@Base 6.1.20030421 + BioseqSeg@Base 6.1.20030421 + BioseqSegAa@Base 6.1.20030421 + BioseqSegEx@Base 6.1.20030421 + BioseqSegNa@Base 6.1.20030421 + BlastAdjustDbNumbers@Base 6.1.20030421 + BlastAllWordDestruct@Base 6.1.20030421 + BlastAllWordNew@Base 6.1.20030421 + BlastBandAlignFromBlastSeqAlign@Base 6.1.20030421 + BlastBioseqFilter@Base 6.1.20030421 + BlastBioseqFilterEx@Base 6.1.20030421 + BlastClusterHitsFromSeqAlign@Base 6.1.20030421 + BlastComputeLengthAdjustment@Base 6.1.20040505 + BlastConstructErrorMessage@Base 6.1.20030421 + BlastConstructFilterString@Base 6.1.20030421 + BlastConvertDNASeqLoc@Base 6.1.20030421 + BlastConvertProteinSeqLoc@Base 6.1.20030421 + BlastCreateQueryDNAP@Base 6.1.20030421 + BlastCreateVirtualOIDList@Base 6.1.20030421 + BlastCutoffs@Base 6.1.20030421 + BlastDeleteFakeBioseq@Base 6.1.20030421 + BlastDeleteHeap@Base 6.1.20030421 + BlastDeleteUserErrorString@Base 6.1.20030421 + BlastDestroyErrorMessage@Base 6.1.20030421 + BlastDuplicateMultQueries@Base 6.1.20030421 + BlastErrorChainDestroy@Base 6.1.20030421 + BlastErrorPrint@Base 6.1.20030421 + BlastErrorPrintExtra@Base 6.1.20030421 + BlastErrorToString@Base 6.1.20050429 + BlastExtendWordExit@Base 6.1.20030421 + BlastFillQueryOffsets@Base 6.1.20030421 + BlastFindWords@Base 6.1.20030421 + BlastFreeHeap@Base 6.1.20030421 + BlastFreeQueryDNAP@Base 6.1.20030421 + BlastGapDecayDivisor@Base 6.1.20040505 + BlastGetAllowedGis@Base 6.1.20030421 + BlastGetDbChunk@Base 6.1.20030421 + BlastGetFirstAndLastContext@Base 6.1.20030421 + BlastGetGapAlgnTbck@Base 6.1.20030421 + BlastGetGapAlgnTbckWithReaddb@Base 6.1.20030421 + BlastGetGappedScore@Base 6.1.20030421 + BlastGetGappedScoreWithReaddb@Base 6.1.20030421 + BlastGetLetterIndex@Base 6.1.20030421 + BlastGetNonSumStatsEvalue@Base 6.1.20030421 + BlastGetNumIdentical@Base 6.1.20030421 + BlastGetPhiReference@Base 6.1.20030421 + BlastGetProgramName@Base 6.1.20030421 + BlastGetProgramNumber@Base 6.1.20030421 + BlastGetReference@Base 6.1.20030421 + BlastGetReleaseDate@Base 6.1.20030421 + BlastGetSequenceFromBioseq@Base 6.1.20030421 + BlastGetStdAlphabet@Base 6.1.20030421 + BlastGetSubjectId@Base 6.1.20030421 + BlastGetSubjectIdEx@Base 6.1.20030421 + BlastGetTypes@Base 6.1.20030421 + BlastGetVersionNumber@Base 6.1.20030421 + BlastGetVirtualOIDList@Base 6.1.20030421 + BlastGiListDestruct@Base 6.1.20030421 + BlastGiListNew@Base 6.1.20030421 + BlastHSPGetNumIdentical@Base 6.1.20030421 + BlastHitListDestruct@Base 6.1.20030421 + BlastHitListNew@Base 6.1.20030421 + BlastHitListPurge@Base 6.1.20030421 + BlastHitRangeDestruct@Base 6.1.20030421 + BlastHitRangeNew@Base 6.1.20030421 + BlastInsertList2Heap@Base 6.1.20030421 + BlastKarlinBlkCalc@Base 6.1.20030421 + BlastKarlinBlkCreate@Base 6.1.20030421 + BlastKarlinBlkDestruct@Base 6.1.20030421 + BlastKarlinBlkGappedCalc@Base 6.1.20030421 + BlastKarlinBlkGappedCalcEx@Base 6.1.20030421 + BlastKarlinBlkNuclGappedCalc@Base 6.1.20051206 + BlastKarlinBlkStandardCalc@Base 6.1.20030421 + BlastKarlinBlkStandardCalcEx@Base 6.1.20030421 + BlastKarlinEtoP@Base 6.1.20030421 + BlastKarlinEtoS@Base 6.1.20030421 + BlastKarlinEtoS_simple@Base 6.1.20030421 + BlastKarlinGetDefaultMatrixValues@Base 6.1.20030421 + BlastKarlinGetMatrixValues@Base 6.1.20030421 + BlastKarlinGetMatrixValuesEx2@Base 6.1.20030421 + BlastKarlinGetMatrixValuesEx@Base 6.1.20030421 + BlastKarlinGetNuclAlphaBeta@Base 6.1.20051206 + BlastKarlinLHtoK@Base 6.1.20030421 + BlastKarlinLambdaNR@Base 6.1.20030421 + BlastKarlinPtoE@Base 6.1.20030421 + BlastKarlinReportAllowedValues@Base 6.1.20030421 + BlastKarlinStoE@Base 6.1.20030421 + BlastKarlinStoE_simple@Base 6.1.20030421 + BlastKarlinStoLen@Base 6.1.20030421 + BlastKarlinStoP@Base 6.1.20030421 + BlastKarlinStoP_simple@Base 6.1.20030421 + BlastKarlinkGapBlkFill@Base 6.1.20030421 + BlastLCaseMaskTheResidues@Base 6.1.20030421 + BlastLargeGapSumE@Base 6.1.20030421 + BlastLinkHsps@Base 6.1.20030421 + BlastMakeCopyQueryDNAP@Base 6.1.20030421 + BlastMakeFakeBioseq@Base 6.1.20030421 + BlastMakeFakeBspConcat@Base 6.1.20030421 + BlastMakeMultQueries@Base 6.1.20030421 + BlastMakeTempProteinBioseq@Base 6.1.20030421 + BlastMaskTheResidues@Base 6.1.20030421 + BlastMatrixRescaleDestruct@Base 6.1.20030421 + BlastMatrixRescaleNew@Base 6.1.20030421 + BlastMatrixToTxMatrix@Base 6.1.20030421 + BlastMultQueriesDestruct@Base 6.1.20051206 + BlastNTGetGappedScore@Base 6.1.20030421 + BlastNTPreliminaryGappedScore@Base 6.1.20030421 + BlastNewFindWords@Base 6.1.20030421 + BlastNewFindWordsEx@Base 6.1.20030421 + BlastNewFindWords_Old@Base 6.1.20030421 + BlastNtFindWords@Base 6.1.20030421 + BlastNtSaveCurrentHsp@Base 6.1.20030421 + BlastNtSaveCurrentHspGapped@Base 6.1.20030421 + BlastNtWordExtend@Base 6.1.20030421 + BlastNtWordUngappedExtend@Base 6.1.20030421 + BlastOtherReturnsFree@Base 6.1.20030421 + BlastOtherReturnsPrepare@Base 6.1.20030421 + BlastOutputAsnRead@Base 6.1.20030421 + BlastOutputAsnWrite@Base 6.1.20030421 + BlastOutputFree@Base 6.1.20030421 + BlastOutputNew@Base 6.1.20030421 + BlastPSIMaxScoreGet@Base 6.1.20030421 + BlastParseInputString@Base 6.1.20030421 + BlastPopulateAllWordArrays@Base 6.1.20030421 + BlastPreliminaryGappedScore@Base 6.1.20030421 + BlastPrintAlignInfo@Base 6.1.20030421 + BlastPrintFilterWarning@Base 6.1.20030421 + BlastPrintPhiReference@Base 6.1.20030421 + BlastPrintReference@Base 6.1.20030421 + BlastPrintTabularResults@Base 6.1.20031028 + BlastPrintTabulatedResults@Base 6.1.20030421 + BlastPrintTabulatedResultsEx@Base 6.1.20030421 + BlastPrintVersionInfo@Base 6.1.20030421 + BlastPrintVersionInfoEx@Base 6.1.20030421 + BlastProcessGiLists@Base 6.1.20030421 + BlastPruneHitsFromSeqAlign@Base 6.1.20030421 + BlastPruneSapStructDestruct@Base 6.1.20030421 + BlastPruneSeqAlignByEvalueRange@Base 6.1.20030421 + BlastPruneSeqAlignByGiList@Base 6.1.20030421 + BlastPruneSeqAlignBySortedGiList@Base 6.1.20050429 + BlastQuerySequenceSetUp@Base 6.1.20030421 + BlastReapHitlistByEvalue@Base 6.1.20030421 + BlastRepresentativeResidues@Base 6.1.20030421 + BlastResCompDestruct@Base 6.1.20030421 + BlastResCompNew@Base 6.1.20030421 + BlastResCompStr@Base 6.1.20030421 + BlastResFreqClr@Base 6.1.20030421 + BlastResFreqDestruct@Base 6.1.20030421 + BlastResFreqFree@Base 6.1.20030421 + BlastResFreqNew@Base 6.1.20030421 + BlastResFreqNormalize@Base 6.1.20030421 + BlastResFreqResComp@Base 6.1.20030421 + BlastResFreqStdComp@Base 6.1.20030421 + BlastResFreqString@Base 6.1.20030421 + BlastSaveCurrentHitlist@Base 6.1.20030421 + BlastSaveCurrentHsp@Base 6.1.20030421 + BlastSaveCurrentHspGapped@Base 6.1.20030421 + BlastScaleMatrix@Base 6.1.20030421 + BlastScoreBlkFill@Base 6.1.20030421 + BlastScoreBlkMatCreateEx@Base 6.1.20030421 + BlastScoreBlkMatFill@Base 6.1.20030421 + BlastScoreBlkMatRead@Base 6.1.20030421 + BlastScoreBlkMaxScoreSet@Base 6.1.20030421 + BlastScoreFreqDestruct@Base 6.1.20030421 + BlastScoreFreqNew@Base 6.1.20030421 + BlastScoreSetAmbigRes@Base 6.1.20030421 + BlastSearchBlkDestruct@Base 6.1.20030421 + BlastSearchBlkDuplicate@Base 6.1.20030421 + BlastSearchBlkNew@Base 6.1.20030421 + BlastSearchBlkNewExtra@Base 6.1.20030421 + BlastSeqLocFillDoubleInt@Base 6.1.20030421 + BlastSeqLocFillDoubleIntEx@Base 6.1.20030421 + BlastSeqLocFillDoubleIntRev@Base 6.1.20030421 + BlastSeqLocFilter@Base 6.1.20030421 + BlastSeqLocFilterEx@Base 6.1.20030421 + BlastSequenceAddSequence@Base 6.1.20030421 + BlastSequenceBlkDestruct@Base 6.1.20030421 + BlastSequencesOnTheFly@Base 6.1.20030421 + BlastSequencesOnTheFlyByLoc@Base 6.1.20030421 + BlastSequencesOnTheFlyEx@Base 6.1.20030421 + BlastSetUserErrorString@Base 6.1.20030421 + BlastSingleQueryResultSize@Base 6.1.20051206 + BlastSmallGapSumE@Base 6.1.20030421 + BlastStartAwakeThread@Base 6.1.20030421 + BlastStopAwakeThread@Base 6.1.20030421 + BlastSumP@Base 6.1.20030421 + BlastThrInfoFree@Base 6.1.20030421 + BlastThrInfoNew@Base 6.1.20030421 + BlastTickProc@Base 6.1.20030421 + BlastTimeFillStructure@Base 6.1.20030421 + BlastTranslateUnambiguousSequence@Base 6.1.20030421 + BlastTwoSequences@Base 6.1.20030421 + BlastTwoSequencesByLoc@Base 6.1.20030421 + BlastTwoSequencesByLocEx@Base 6.1.20030421 + BlastTwoSequencesByLocWithCallback@Base 6.1.20030421 + BlastTwoSequencesEx@Base 6.1.20030421 + BlastTwoSequencesWithCallback@Base 6.1.20030421 + BlastUnevenGapSumE@Base 6.1.20030421 + BposComputation@Base 6.1.20030421 + CAdjustmentGetReference@Base 6.1.20050605 + CAdjustmentPrintReference@Base 6.1.20050605 + CBStatisticsGetReference@Base 6.1.20050605 + CBStatisticsPrintReference@Base 6.1.20050605 + CC_ExtendSeqAlign@Base 6.1.20030421 + CSIM@Base 6.1.20030421 + CatenateProfile@Base 6.1.20030421 + CdCheck@Base 6.1.20030421 + CdCheckEx@Base 6.1.20110713 + CddHitDestruct@Base 6.1.20030421 + CddHitNew@Base 6.1.20030421 + ChangeCitSub@Base 6.1.20030421 + ChangeGlobalBandMatrix@Base 6.1.20030421 + ChangeReplaceToQual@Base 6.1.20030421 + ChangeTreeScale@Base 6.1.20030421 + Change_Loc_Strand@Base 6.1.20030421 + CheckBS@Base 6.1.20030421 + CheckCitSubNew@Base 6.1.20030421 + CheckLocWhole@Base 6.1.20030421 + CheckMaps@Base 6.1.20030421 + CheckOverlap@Base 6.1.20030421 + CheckQuals@Base 6.1.20030421 + CheckQualsWithComm@Base 6.1.20030421 + CheckSegDescrChoice@Base 6.1.20030421 + CheckStartForGappedAlignment@Base 6.1.20030421 + ChkNucProt@Base 6.1.20030421 + ChkSegset@Base 6.1.20030421 + CkOrg@Base 6.1.20030421 + CleanNewList@Base 6.1.20030421 + CleanPattern@Base 6.1.20030421 + CleanUpPseudoProducts@Base 6.1.20030421 + CleanUpSeqDescrChoice@Base 6.1.20030421 + CleanupEmptyFeatCallback@Base 6.1.20030421 + CleanupGenbankCallback@Base 6.1.20030421 + ClearBatchSuggestFrames@Base 6.1.20030421 + ClearBatchSuggestNucleotide@Base 6.1.20030421 + ClearNonMetOrfs@Base 6.1.20030421 + ClearSeqRec@Base 6.1.20030421 + CmpOrgById@Base 6.1.20030421 + CmpPub@Base 6.1.20030421 + CodonTableFromSeqLoc@Base 6.1.20030421 + ComPatDup@Base 6.1.20030421 + ComPatFree@Base 6.1.20030421 + ComPatNew@Base 6.1.20030421 + ComProfDup@Base 6.1.20030421 + ComProfDupThis@Base 6.1.20030421 + ComProfFree@Base 6.1.20030421 + ComProfLink@Base 6.1.20030421 + ComProfNew@Base 6.1.20030421 + CombineBSFeat@Base 6.1.20030421 + CommonIndexDestruct@Base 6.1.20030421 + CommonIndexInit@Base 6.1.20030421 + CommonIndexResultDestruct@Base 6.1.20030421 + CompilePattern@Base 6.1.20030421 + ConKovCDSGlobalNtFreqs@Base 6.1.20030421 + ConKovCDSNtFreqs@Base 6.1.20030421 + ConKovTrainCDS@Base 6.1.20030421 + ConcatSeqLoc@Base 6.1.20040505 + Confide@Base 6.1.20030421 + ConfigureDbChunkSize@Base 6.1.20050605 + Conform@Base 6.1.20030421 + ConformSeqEntry@Base 6.1.20030421 + ConsortSeqEntry@Base 6.1.20030421 + ContextToFrame@Base 6.1.20030421 + ConvertEditScript@Base 6.1.20030421 + ConvertEtoPseudoS@Base 6.1.20030421 + ConvertFullLenPubFeatToDesc@Base 6.1.20030421 + ConvertFullLenSourceFeatToDesc@Base 6.1.20030421 + ConvertPartDescToFeat@Base 6.1.20110713 + ConvertPseudoStoE@Base 6.1.20030421 + ConvertPtoPseudoS@Base 6.1.20030421 + ConvertSegSetToDeltaSeq@Base 6.1.20110713 + ConvertSegSetToDeltaSeqEx@Base 6.1.20160908 + CopyResultHspToHSP@Base 6.1.20041020 + CorrectSourceFeat@Base 6.1.20030421 + CountNodes@Base 6.1.20030421 + CountNodesOnLevel@Base 6.1.20030421 + CountSourceFeat@Base 6.1.20030421 + CposComputation@Base 6.1.20030421 + CreatBandStruct@Base 6.1.20030421 + CreateEditScript@Base 6.1.20030421 + DBName@Base 6.1.20030421 + DBShift@Base 6.1.20030421 + DB_Subset@Base 6.1.20030421 + DBisProt@Base 6.1.20030421 + DOT_AttachSeqAnnotToSeqEntry@Base 6.1.20030421 + DOT_BuildHitList@Base 6.1.20030421 + DOT_CreateAndStore@Base 6.1.20030421 + DOT_CreateAndStorebyLoc@Base 6.1.20030421 + DOT_DNAScoringMatrix@Base 6.1.20030421 + DOT_FreeHitsArray@Base 6.1.20030421 + DOT_FreeMainInfo@Base 6.1.20030421 + DOT_FreeMainInfoPtrEx@Base 6.1.20030421 + DOT_GetSeqs@Base 6.1.20030421 + DOT_InitMainInfo@Base 6.1.20030421 + DOT_NewHistNode@Base 6.1.20030421 + DOT_SPI_FindBestAlnByDotPlot@Base 6.1.20030421 + DefaultPSimPam@Base 6.1.20030421 + DefaultSimPam@Base 6.1.20030421 + DefineToFrame@Base 6.1.20030421 + DelFeatFromList@Base 6.1.20030421 + DeletePubs@Base 6.1.20030421 + DivideSeqAligns@Base 6.1.20030421 + DumpBlastDB@Base 6.1.20050429 + DumpHashTable@Base 6.1.20030421 + DumpOneSequence@Base 6.1.20050828 + DustBioseq@Base 6.1.20030421 + DustDataFree@Base 6.1.20030421 + DustDataNew@Base 6.1.20030421 + DustFilter@Base 6.1.20030421 + DustForGraph@Base 6.1.20030421 + DustGraph@Base 6.1.20030421 + DustRegionFree@Base 6.1.20030421 + DustRegionNew@Base 6.1.20030421 + DustSegs@Base 6.1.20070822 + DustSeq@Base 6.1.20030421 + DustSeqLoc@Base 6.1.20030421 + DustSeqPort@Base 6.1.20030421 + EmbedFragLengthInfo@Base 6.1.20030421 + EmbedMolecularWeightInfo@Base 6.1.20030421 + EndOfSig@Base 6.1.20030421 + EntryChangeGBSource@Base 6.1.20030421 + EntryChangeImpFeat@Base 6.1.20030421 + EntryChangeImpFeatToProt@Base 6.1.20030421 + EntryCheckGBBlock@Base 6.1.20030421 + EntryMergeDupBioSources@Base 6.1.20030421 + EpiDatFree@Base 6.1.20030421 + EpiDatNew@Base 6.1.20030421 + ErrorDescString@Base 6.1.20030421 + ExploreTree@Base 6.1.20030421 + ExploreTreeLevel@Base 6.1.20030421 + ExploreTreeNumber@Base 6.1.20030421 + ExploreUnrootedTree@Base 6.1.20030421 + ExploreUnrootedTreeNumber@Base 6.1.20030421 + ExtendGeneFeatIfOnMRNA@Base 6.1.20030421 + ExtendSeqAlign@Base 6.1.20030421 + ExtendedSeqEntryCleanup@Base 6.1.20160908 + ExtractSourceFeatList@Base 6.1.20030421 + FCMDAccListFree@Base 6.1.20030421 + FDBAddBioseq@Base 6.1.20030421 + FDBAddLinksInformation@Base 6.1.20030421 + FDBAddMembershipInformation@Base 6.1.20030421 + FDBAddPig@Base 6.1.20030421 + FDBAddSeqEntry@Base 6.1.20030421 + FDBAddSequence2@Base 6.1.20030421 + FDBAddSequence@Base 6.1.20030421 + FDBBlastDefLineSetBit@Base 6.1.20061015 + FDBCleanUp@Base 6.1.20030421 + FDBCleanUpInProgress@Base 6.1.20060507 + FDBCleanUpRecursively@Base 6.1.20030421 + FDBDestroyLinksTable@Base 6.1.20030421 + FDBDestroyMembershipsTable@Base 6.1.20030421 + FDBDumpDeflineAsn@Base 6.1.20061015 + FDBFillIndexTables@Base 6.1.20061015 + FDBGetDefAsnFromBioseq@Base 6.1.20041020 + FDBLoadLinksTable@Base 6.1.20030421 + FDBLoadMembershipsTable@Base 6.1.20030421 + FDBOptionsFree@Base 6.1.20030421 + FDBOptionsNew@Base 6.1.20030421 + FDBPigTableFree@Base 6.1.20030421 + FDBPigTableNew@Base 6.1.20030421 + FDBTaxidDeflineTableFree@Base 6.1.20050828 + FDBTaxidDeflineTableNew@Base 6.1.20050828 + FDBTaxidDeflineTableSearchGi@Base 6.1.20050828 + FDBTaxidDeflineTableSearchSeqid@Base 6.1.20050828 + FDB_SEDataInfoFree@Base 6.1.20030421 + FDB_SEDataInfoNew@Base 6.1.20030421 + FDFGetAccessionFromSeqIdChain@Base 6.1.20030421 + FDLCreateAsnDF@Base 6.1.20030421 + FDReadDeflineAsn@Base 6.1.20030421 + FD_ConstructMultivolumeDBList@Base 6.1.20030421 + FD_CreateAliasFile@Base 6.1.20030421 + FD_CreateAliasFileEx@Base 6.1.20030421 + FD_MakeAliasFile@Base 6.1.20030421 + FastaCheckDna@Base 6.1.20030421 + FastaTitle@Base 6.1.20030421 + FastaToBlastDB@Base 6.1.20030421 + Fastacmd_ParseLocations@Base 6.1.20060507 + Fastacmd_Search@Base 6.1.20030421 + Fastacmd_Search_ex@Base 6.1.20030421 + FilterBioseq@Base 6.1.20030421 + FilterCC@Base 6.1.20030421 + FilterCCVS@Base 6.1.20030421 + FilterDatFree@Base 6.1.20030421 + FilterDatNew@Base 6.1.20030421 + FilterEpi@Base 6.1.20030421 + FilterEpiBioseq@Base 6.1.20030421 + FilterFilter@Base 6.1.20030421 + FilterSeqLoc@Base 6.1.20030421 + FilterSeqPort@Base 6.1.20030421 + FilterSigSeq@Base 6.1.20030421 + FilterWithSeg@Base 6.1.20030421 + FindBlastDBFile@Base 6.1.20030421 + FindDBbyGI@Base 6.1.20030421 + FindHumanRepeats@Base 6.1.20030421 + FindOldLineage@Base 6.1.20030421 + FindOrg@Base 6.1.20030421 + FindPivotNode@Base 6.1.20030421 + FindSimilarBiasOrfs@Base 6.1.20030421 + FiniSTSSearch@Base 6.1.20030421 + FixNucProtSet@Base 6.1.20030421 + FlatSafeSize@Base 6.1.20030421 + FormatBlastParameters@Base 6.1.20030421 + FormatDBClose@Base 6.1.20030421 + FormatDBInit@Base 6.1.20030421 + FrameToDefine@Base 6.1.20030421 + FreeCDDAligns@Base 6.1.20031028 + FreeCDDRegions@Base 6.1.20030421 + FreeCodonTable@Base 6.1.20030421 + FreqFree@Base 6.1.20030421 + FreqNew@Base 6.1.20030421 + GI2OID@Base 6.1.20030421 + GIs2OIDs@Base 6.1.20030421 + GXECollectDataForSeqalign@Base 6.1.20030421 + GapAlignBlkDelete@Base 6.1.20030421 + GapAlignBlkNew@Base 6.1.20030421 + GapXDropStateDestroy@Base 6.1.20030421 + GapXEditBlockDelete@Base 6.1.20030421 + GapXEditBlockNew@Base 6.1.20030421 + GapXEditBlockToSeqAlign@Base 6.1.20030421 + GapXEditScriptDelete@Base 6.1.20030421 + GapXEditScriptNew@Base 6.1.20030421 + GatherCDSFree@Base 6.1.20030421 + GatherCDSNew@Base 6.1.20030421 + GetAccList@Base 6.1.20030421 + GetAlignExtremes@Base 6.1.20030421 + GetAltList@Base 6.1.20030421 + GetDbSubjRatio@Base 6.1.20030421 + GetDeepestLevel@Base 6.1.20030421 + GetDeepestLevelBranch@Base 6.1.20030421 + GetDescr@Base 6.1.20030421 + GetGcodeFromBioseq@Base 6.1.20080302 + GetGisFromFile@Base 6.1.20030421 + GetLevelLeftNode@Base 6.1.20030421 + GetMBTemplateType@Base 6.1.20030421 + GetMaximumTreeXcoord@Base 6.1.20030421 + GetMaximumTreeYcoord@Base 6.1.20030421 + GetMinimumTreeXcoord@Base 6.1.20030421 + GetMinimumTreeYcoord@Base 6.1.20030421 + GetMultBiosource@Base 6.1.20030421 + GetNumSpacers@Base 6.1.20030421 + GetOrfList@Base 6.1.20030421 + GetPrivatTranslationTable@Base 6.1.20030421 + GetQueryNum@Base 6.1.20030421 + GetRidOfEmptyFeatsDescCallback@Base 6.1.20030421 + GetScoreSetFromBlastResultHsp@Base 6.1.20030421 + GetSeqAlignForResultHitList@Base 6.1.20030421 + GetSequenceWithDenseSeg@Base 6.1.20030421 + GetStartForGappedAlignment@Base 6.1.20030421 + GetTheSeqAlignID@Base 6.1.20030421 + GetTranslation@Base 6.1.20030421 + GetWidestLevelLeftNode@Base 6.1.20030421 + Get_Genetic_Code@Base 6.1.20030421 + GlobalBandByLoc@Base 6.1.20030421 + GlobalBandStructCreate@Base 6.1.20030421 + GlobalBandStructDelete@Base 6.1.20030421 + GlobalBandToEditBlock@Base 6.1.20030421 + GlobalBandToSeqAlign@Base 6.1.20030421 + GpipeSeqEntryCleanup@Base 6.1.20090719 + GreedyAlignMemAlloc@Base 6.1.20030421 + GreedyAlignMemFree@Base 6.1.20030421 + HackSeqLocId@Base 6.1.20030421 + HeadNode@Base 6.1.20030421 + HitAsnRead@Base 6.1.20030421 + HitAsnWrite@Base 6.1.20030421 + HitFree@Base 6.1.20030421 + HitNew@Base 6.1.20030421 + HitRangeToSeqLoc@Base 6.1.20030421 + HspArrayPurge@Base 6.1.20030421 + HspAsnRead@Base 6.1.20030421 + HspAsnWrite@Base 6.1.20030421 + HspFree@Base 6.1.20030421 + HspNew@Base 6.1.20030421 + IE@Base 6.1.20030421 + IMPALAPrintHelp@Base 6.1.20030421 + IMPALAPrintReference@Base 6.1.20030421 + IMPALAfillResidueProbability@Base 6.1.20030421 + IMPALAfillSfp@Base 6.1.20030421 + IMPALAfindUngappedLambda@Base 6.1.20030421 + IO@Base 6.1.20030421 + IR@Base 6.1.20030421 + ISAMCountLines@Base 6.1.20030421 + ISAMCreateDatabase@Base 6.1.20030421 + ISAMGetIdxOption@Base 6.1.20030421 + ISAMMakeIndex@Base 6.1.20030421 + ISAMNumTerms@Base 6.1.20030421 + ISAMObjectFree@Base 6.1.20030421 + ISAMObjectNew@Base 6.1.20030421 + ISAMSearchTerm@Base 6.1.20030421 + ISAMSetCheckForNonUnique@Base 6.1.20030421 + ISAMSetDataSorted@Base 6.1.20061015 + ISAMSetUpCAInfo@Base 6.1.20030421 + ISAMUninitSearch@Base 6.1.20030421 + ISAMUpdateDatabase@Base 6.1.20030421 + ImpFeatToCdregion@Base 6.1.20030421 + InitHashTable@Base 6.1.20030421 + InitHitLists@Base 6.1.20030421 + InitSTSSearch@Base 6.1.20030421 + InitSTSSearch_r@Base 6.1.20030421 + InitSuggest@Base 6.1.20030421 + Int4ListAdd@Base 6.1.20031028 + Int4ListBSearch@Base 6.1.20031028 + Int4ListConcat@Base 6.1.20031028 + Int4ListFree@Base 6.1.20031028 + Int4ListIntersect@Base 6.1.20031028 + Int4ListMakeUnique@Base 6.1.20031028 + Int4ListNew@Base 6.1.20031028 + Int4ListNewEx@Base 6.1.20031028 + Int4ListReadFromFile@Base 6.1.20031028 + Int4ListResize@Base 6.1.20031028 + IntProfileMatchBioseq@Base 6.1.20030421 + IntegerProfile@Base 6.1.20030421 + InvertPattern@Base 6.1.20030421 + InvertProfile@Base 6.1.20030421 + IsProsite@Base 6.1.20030421 + IsPubContentBad@Base 6.1.20070822 + IsStringEmpty@Base 6.1.20030421 + IterationAsnRead@Base 6.1.20030421 + IterationAsnWrite@Base 6.1.20030421 + IterationFree@Base 6.1.20030421 + IterationNew@Base 6.1.20030421 + K@Base 6.1.20030421 + L@Base 6.1.20030421 + LastNode@Base 6.1.20030421 + LoadNewEnds@Base 6.1.20030421 + LocalBandStructCreate@Base 6.1.20030421 + LocalBandStructDelete@Base 6.1.20030421 + LocalBandToEditBlock@Base 6.1.20030421 + LocalBandToSeqAlign@Base 6.1.20030421 + Look_for_stop@Base 6.1.20030421 + MBToGapXEditScript@Base 6.1.20030421 + MBXmlClose@Base 6.1.20030421 + MOT_FindKozak@Base 6.1.20030421 + MOT_FindPolyA@Base 6.1.20030421 + MOT_FindRepeats@Base 6.1.20030421 + MOT_FindSignalPeptide@Base 6.1.20030421 + MOT_MotifSearch@Base 6.1.20030421 + MQ_CheckLists@Base 6.1.20040204 + MQ_UpdateResultLists@Base 6.1.20030421 + MakeBlastScore@Base 6.1.20030421 + MakeDiscontiguousAlignments@Base 6.1.20060301 + MapsToGenref@Base 6.1.20030421 + MashNew@Base 6.1.20030421 + MaskSeqLocFromSeqAlign@Base 6.1.20030421 + MatchSa2Sl@Base 6.1.20030421 + Max_val@Base 6.1.20030421 + MegaBlastAffineGreedyAlign@Base 6.1.20030421 + MegaBlastBuildLookupTable@Base 6.1.20030421 + MegaBlastExtendHit@Base 6.1.20030421 + MegaBlastFillHspGapInfo@Base 6.1.20030421 + MegaBlastGapInfoToSeqAlign@Base 6.1.20030421 + MegaBlastGappedAlign@Base 6.1.20030421 + MegaBlastGetFirstAndLastContext@Base 6.1.20030421 + MegaBlastGetHspPercentIdentity@Base 6.1.20030421 + MegaBlastGetNumIdentical@Base 6.1.20030421 + MegaBlastGreedyAlign@Base 6.1.20030421 + MegaBlastLookupTableDestruct@Base 6.1.20030421 + MegaBlastLookupTableDup@Base 6.1.20030421 + MegaBlastMaskTheResidues@Base 6.1.20030421 + MegaBlastNtWordExtend@Base 6.1.20030421 + MegaBlastPackAlignmentsByQuery@Base 6.1.20030421 + MegaBlastParameterBlkNew@Base 6.1.20030421 + MegaBlastPrintAlignInfo@Base 6.1.20030421 + MegaBlastPrintReference@Base 6.1.20030421 + MegaBlastReevaluateWithAmbiguities@Base 6.1.20030421 + MegaBlastSaveCurrentHitlist@Base 6.1.20030421 + MegaBlastSequenceAddSequence@Base 6.1.20030421 + MegaBlastSetUpSearchInternalByLoc@Base 6.1.20030421 + MegaBlastSetUpSearchWithReadDbInternal@Base 6.1.20030421 + MegaBlastWordFinder@Base 6.1.20030421 + MegaBlastWordFinderDeallocate@Base 6.1.20030421 + MergeAdjacentAnnotsCallback@Base 6.1.20030421 + MergeBSinDescr@Base 6.1.20030421 + MergeCodonTables@Base 6.1.20030421 + Min_val@Base 6.1.20030421 + ModToBiosource@Base 6.1.20030421 + ModToMolInfo@Base 6.1.20030421 + MoveCdsGBQualProductToName@Base 6.1.20030421 + MoveFeatGBQualsToFields@Base 6.1.20030421 + MoveFeatsFromPartsSet@Base 6.1.20060301 + MoveNPPubs@Base 6.1.20030421 + MovePopPhyMutPubs@Base 6.1.20030421 + MoveProtGBQualProductToName@Base 6.1.20030421 + MoveRnaGBQualProductToName@Base 6.1.20030421 + MoveSegmPubs@Base 6.1.20030421 + MoveSetPubs@Base 6.1.20030421 + MyBioseqSeg@Base 6.1.20030421 + NA4alpha@Base 6.1.20030421 + NIL1@Base 6.1.20030421 + NIL@Base 6.1.20030421 + NISAMFindKey@Base 6.1.20030421 + NISAMFindKeys@Base 6.1.20030421 + NISAMSearch@Base 6.1.20030421 + NISAMSearchList@Base 6.1.20030421 + NewCodonTable@Base 6.1.20030421 + NewLineage@Base 6.1.20030421 + NewPubs@Base 6.1.20030421 + NlmCloseMFILE@Base 6.1.20030421 + NlmOpenMFILE@Base 6.1.20030421 + NlmReadMFILE@Base 6.1.20030421 + NlmSeekInMFILE@Base 6.1.20030421 + NlmTellMFILE@Base 6.1.20030421 + NoBiosourceOrTaxonId@Base 6.1.20030421 + NormalizePeriodsOnInitials@Base 6.1.20030421 + NormalizeSegSeqMolInfo@Base 6.1.20030421 + OIDListFree@Base 6.1.20030421 + OOFBlastHSPGetNumIdentical@Base 6.1.20031028 + OOFGapXEditBlockToSeqAlign@Base 6.1.20030421 + OOFTracebackToGapXEditBlock@Base 6.1.20030421 + OutLocation@Base 6.1.20030421 + OutProteinID@Base 6.1.20030421 + PGPOutTextMessages@Base 6.1.20030421 + PSIMatrixFrequencyRatiosFree@Base 6.1.20041020 + PSIMatrixFrequencyRatiosNew@Base 6.1.20041020 + PSIXmlClose@Base 6.1.20030421 + PSIXmlInit@Base 6.1.20030421 + PSIXmlReset@Base 6.1.20040505 + PSUGapOptionsCreate@Base 6.1.20030421 + PSUGapOptionsDelete@Base 6.1.20030421 + PalindromeCheck@Base 6.1.20030421 + ParametersAsnRead@Base 6.1.20030421 + ParametersAsnWrite@Base 6.1.20030421 + ParametersFree@Base 6.1.20030421 + ParametersNew@Base 6.1.20030421 + ParseDBConfigFile@Base 6.1.20030421 + PatternMatch@Base 6.1.20030421 + PatternMatchBioseq@Base 6.1.20030421 + PccDatFree@Base 6.1.20030421 + PccDatNew@Base 6.1.20030421 + PerformGappedAlignment@Base 6.1.20030421 + PerformGappedAlignmentWithTraceback@Base 6.1.20030421 + PerformGreedyAlignmentWithTraceback@Base 6.1.20040204 + PerformNtGappedAlignment@Base 6.1.20030421 + PredictCC@Base 6.1.20030421 + PredictCCBioseq@Base 6.1.20030421 + PredictCCSeqLoc@Base 6.1.20030421 + PredictCCSeqPort@Base 6.1.20030421 + PredictEpi@Base 6.1.20030421 + PredictEpiBioseq@Base 6.1.20030421 + PredictEpiSeqLoc@Base 6.1.20030421 + PredictEpiSeqPort@Base 6.1.20030421 + PrintAllowedValuesMessage@Base 6.1.20030421 + PrintDbInformation@Base 6.1.20030421 + PrintDbInformationBasic@Base 6.1.20030421 + PrintDbInformationBasicEx@Base 6.1.20051206 + PrintDbInformationWithRID@Base 6.1.20030421 + PrintDbReport@Base 6.1.20030421 + PrintKAParameters@Base 6.1.20030421 + PrintKAParametersExtra@Base 6.1.20030421 + PrintMaskedSequence@Base 6.1.20030421 + PrintMatrixMessage@Base 6.1.20030421 + PrintTabularOutputHeader@Base 6.1.20030421 + PrintTildeSepLines@Base 6.1.20030421 + ProcessData@Base 6.1.20030421 + ProfLenMax@Base 6.1.20030421 + ProfScoreMax@Base 6.1.20030421 + ProfileMatch@Base 6.1.20030421 + ProfileMatchBioseq@Base 6.1.20030421 + PrositeToGBPattern@Base 6.1.20030421 + R@Base 6.1.20030421 + RDBGetTaxNames@Base 6.1.20030421 + RDBTaxInfoClose@Base 6.1.20030421 + RDBTaxInfoInit@Base 6.1.20030421 + RPSBgetCddHits@Base 6.1.20030421 + RPSBlastSearch@Base 6.1.20030421 + RPSBlastSearchEx@Base 6.1.20030421 + RPSBlastSearchLight@Base 6.1.20030421 + RPSBlastSearchMT@Base 6.1.20030421 + RPSCalcEValue@Base 6.1.20030421 + RPSClose@Base 6.1.20030421 + RPSGetSequence@Base 6.1.20030421 + RPSInfoAttach@Base 6.1.20030421 + RPSInfoDetach@Base 6.1.20030421 + RPSInit@Base 6.1.20030421 + RPSInitEx@Base 6.1.20030421 + RPSUpdateDbSize@Base 6.1.20030421 + RPSequenceFree@Base 6.1.20030421 + ReadDBBioseqFetchDisable@Base 6.1.20030421 + ReadDBBioseqFetchEnable@Base 6.1.20030421 + ReadDBBioseqSetDbGeneticCode@Base 6.1.20030421 + ReadDBCloseMHdrAndSeqFiles@Base 6.1.20030421 + ReadDBGetDb@Base 6.1.20030421 + ReadDBGetDbId@Base 6.1.20030421 + ReadFilterData@Base 6.1.20030421 + ReadOIDList@Base 6.1.20030421 + ReadPattern@Base 6.1.20030421 + ReadPatternNames@Base 6.1.20030421 + ReadPccData@Base 6.1.20030421 + ReadProfile@Base 6.1.20030421 + ReadPrositePattern@Base 6.1.20030421 + ReadRENPattern@Base 6.1.20030421 + RealBlastGetGappedAlignmentTraceback@Base 6.1.20030421 + ReassembleSeqAlignFromPSeqAlignInfo@Base 6.1.20030421 + RedoAlignmentCore@Base 6.1.20030421 + ReevaluateScoreWithAmbiguities@Base 6.1.20040204 + Region@Base 6.1.20030421 + RemoveBioSourceOnPopSet@Base 6.1.20030421 + RemoveDuplicateCDDs@Base 6.1.20030421 + RemoveInternalOrfs@Base 6.1.20030421 + RemoveMolInfoOnPopSet@Base 6.1.20110713 + ResToInt@Base 6.1.20030421 + ResultIndex1@Base 6.1.20040204 + ResultIndex@Base 6.1.20030421 + ReverseBioseqFeatureStrands@Base 6.1.20041020 + RootTree@Base 6.1.20030421 + S@Base 6.1.20030421 + SEMI_G_ALIGN@Base 6.1.20030421 + SIM2@Base 6.1.20030421 + SIM2ALN@Base 6.1.20030421 + SIM2ENDS@Base 6.1.20030421 + SIM3ALN@Base 6.1.20030421 + SIM3ALN_choice@Base 6.1.20030421 + SIM3ALN_heuristic@Base 6.1.20030421 + SIM4ALN_choice@Base 6.1.20030421 + SISAMFindAllData@Base 6.1.20030421 + SISAMSearch@Base 6.1.20030421 + SI_RecordFree@Base 6.1.20061015 + SI_RecordNew@Base 6.1.20061015 + SORTAddTempName@Base 6.1.20030421 + SORTCheckOrderS@Base 6.1.20030421 + SORTFiles@Base 6.1.20030421 + SORTGetKeyHead@Base 6.1.20030421 + SORTInsertKey@Base 6.1.20030421 + SORTMergeFiles@Base 6.1.20030421 + SORTObjectFree@Base 6.1.20030421 + SORTObjectNew@Base 6.1.20030421 + SORTSetLineLength@Base 6.1.20030421 + SORTSetPrefix@Base 6.1.20030421 + SORTSetReverse@Base 6.1.20030421 + SORTSetTab@Base 6.1.20030421 + SORTSetUnique@Base 6.1.20030421 + SPI_AlignmRNAToGenomic@Base 6.1.20030421 + SPI_AlnSinglemRNAToGen@Base 6.1.20030421 + SPI_AlnSinglemRNAToPieces@Base 6.1.20030421 + SPI_GetProteinFrommRNA@Base 6.1.20030421 + SPI_MakeMultipleAlignment@Base 6.1.20030421 + SPI_OptionsFree@Base 6.1.20030421 + SPI_OptionsNew@Base 6.1.20030421 + SPI_PrintMultipleAlignment@Base 6.1.20030421 + SPI_RegionListFree@Base 6.1.20030421 + SPI_RemoveInconsistentAlnsFromSet@Base 6.1.20030421 + SPI_bsinfoFreeList@Base 6.1.20030421 + SPI_flip_sa_list@Base 6.1.20030421 + SPI_is_acceptor@Base 6.1.20030421 + SPI_is_donor@Base 6.1.20030421 + SPI_mRNAFree@Base 6.1.20030421 + SQN_ExtendAlnAlg@Base 6.1.20030421 + STSDataFree@Base 6.1.20030421 + STSGetOrgTable@Base 6.1.20030421 + STSGetOrganismIndex@Base 6.1.20030421 + STSGetOrganismName@Base 6.1.20030421 + STSSearch@Base 6.1.20030421 + STSSearch_r@Base 6.1.20030421 + SUM_THRESHOLD@Base 6.1.20070822 + SaveRepeats@Base 6.1.20030421 + ScanDIFile@Base 6.1.20030421 + Script_free@Base 6.1.20030421 + SeedPruneHitsFromSeedReturn@Base 6.1.20030421 + SegFree@Base 6.1.20030421 + SegParamsCheck@Base 6.1.20030421 + SegParamsFree@Base 6.1.20030421 + SegParamsNewAa@Base 6.1.20030421 + SegParamsNewNa@Base 6.1.20030421 + SegSeq@Base 6.1.20030421 + SegSeqNullToVirtual@Base 6.1.20110713 + SegsToSeqLoc@Base 6.1.20030421 + SeqAlignReverseOrder@Base 6.1.20030421 + SeqAlignSetGlobalFromLocal@Base 6.1.20030421 + SeqAlignSwapSeqs@Base 6.1.20030421 + SeqAlignToHits@Base 6.1.20030421 + SeqAlignToPSeqAlignInfo@Base 6.1.20030421 + SeqEntryMoveDbxrefs@Base 6.1.20030421 + SeqEntryPubsAsn4@Base 6.1.20030421 + SeqEntryPubsAsn4Ex@Base 6.1.20100808 + SeqEntryToAsn3@Base 6.1.20030421 + SeqEntryToAsn3Ex@Base 6.1.20030421 + SeqEntrysToBLAST@Base 6.1.20030421 + SeqFeatExtract@Base 6.1.20030421 + SeqFeatExtractList@Base 6.1.20030421 + SeqFree@Base 6.1.20030421 + SeqId2OrdinalId@Base 6.1.20030421 + SeqLocDup@Base 6.1.20030421 + SeqLocDupAll@Base 6.1.20030421 + SeqLocDust@Base 6.1.20030421 + SeqLocDustEx@Base 6.1.20070822 + SeqLocLink@Base 6.1.20030421 + SeqLocListToSeqAlign@Base 6.1.20030421 + SeqLocMatch@Base 6.1.20030421 + SeqLocSeg@Base 6.1.20030421 + SeqLocTotalLen@Base 6.1.20030421 + SeqNew@Base 6.1.20030421 + SeqlocSegAa@Base 6.1.20030421 + SeqlocSegsToSeqLoc@Base 6.1.20030421 + SeriousSeqAnnotCleanup@Base 6.1.20100808 + SeriousSeqEntryCleanup@Base 6.1.20030421 + SeriousSeqEntryCleanupBulk@Base 6.1.20030421 + SetAllCoordinates@Base 6.1.20030421 + SetAllLeftRightRootedTreeNeighbors@Base 6.1.20030421 + SetAllLevelNodes@Base 6.1.20030421 + SetAllNumberNodes@Base 6.1.20030421 + SetAllPivotNodes@Base 6.1.20030421 + SetAllTheoreticalCoordinates@Base 6.1.20030421 + SetBatchSuggestFrames@Base 6.1.20030421 + SetBatchSuggestNucleotide@Base 6.1.20030421 + SetGlobaltOptions@Base 6.1.20030421 + SetLeftRightRootedTreeNeighbors@Base 6.1.20030421 + SetLevelNode@Base 6.1.20030421 + SetLowUpFromBlast@Base 6.1.20030421 + SetNumberNode@Base 6.1.20030421 + SetPivotNode@Base 6.1.20030421 + SetTheoreticalCoordinates@Base 6.1.20030421 + ShiftTree@Base 6.1.20030421 + ShortenString@Base 6.1.20030421 + SimpleAutoDef@Base 6.1.20110713 + SimpleIntervalToGapXEditBlock@Base 6.1.20030421 + SortAlignByLocation@Base 6.1.20030421 + SortByLocOrfs@Base 6.1.20030421 + SortCFArray@Base 6.1.20030421 + SortEndsList@Base 6.1.20030421 + SortHPArray@Base 6.1.20030421 + SourceFeatExtract@Base 6.1.20030421 + Sqn_GlobalAlign2Seq@Base 6.1.20030421 + Sqn_GlobalAlign2SeqEx@Base 6.1.20050429 + SrchSegChoice@Base 6.1.20030421 + SrchSegSeqMol@Base 6.1.20030421 + StatisticsAsnRead@Base 6.1.20030421 + StatisticsAsnWrite@Base 6.1.20030421 + StatisticsFree@Base 6.1.20030421 + StatisticsNew@Base 6.1.20030421 + StrStripSpaces@Base 6.1.20030421 + StringExtCmp@Base 6.1.20030421 + StringIgnoreSpaceCmp@Base 6.1.20030421 + StringNStr@Base 6.1.20030421 + StripAllSpace@Base 6.1.20030421 + StripBSfromParts@Base 6.1.20030421 + StripBSfromTop@Base 6.1.20030421 + StripMaps@Base 6.1.20030421 + StripOld@Base 6.1.20030421 + StripProtXref@Base 6.1.20030421 + StripTitleFromProtsInNucProts@Base 6.1.20030421 + StsResultFree@Base 6.1.20030421 + StsResultNew@Base 6.1.20030421 + SuggestClientService@Base 6.1.20030421 + SuggestCodingRegion@Base 6.1.20030421 + SuggestCodingRegionEx@Base 6.1.20090719 + SumBlastGetGappedAlignmentEx@Base 6.1.20030421 + SumBlastGetGappedAlignmentTraceback@Base 6.1.20030421 + TestTree@Base 6.1.20030421 + ToAsn4@Base 6.1.20030421 + TooShort@Base 6.1.20030421 + Total_len@Base 6.1.20030421 + TracebackToGapXEditBlock@Base 6.1.20030421 + TreeCenterNode@Base 6.1.20030421 + TreeNodeFree@Base 6.1.20030421 + TreeNodeFreeBranch@Base 6.1.20030421 + TreeNodeFreeTree@Base 6.1.20030421 + TreeNodeNew@Base 6.1.20030421 + TruncateAlignment@Base 6.1.20060301 + TxDfDbInfoDestruct@Base 6.1.20030421 + TxDfDbInfoNew@Base 6.1.20030421 + TxMatrixDestruct@Base 6.1.20030421 + URK_SeqAlignSortByLength@Base 6.1.20030421 + URK_SeqAlignSortByMolWt@Base 6.1.20030421 + URK_SeqAlignSortByScore@Base 6.1.20030421 + URK_SeqAlignSortByStart@Base 6.1.20030421 + UnSetPivotNodes@Base 6.1.20030421 + UniqueOrfs@Base 6.1.20030421 + UnrootTree@Base 6.1.20030421 + VSBlastOptionNew@Base 6.1.20030421 + VSCombineSeqLoc@Base 6.1.20030421 + VSGetLabels@Base 6.1.20030421 + VSMakeCombinedSeqLoc@Base 6.1.20030421 + VSMakeSeqLoc@Base 6.1.20030421 + VSOptionsFree@Base 6.1.20030421 + VSOptionsNew@Base 6.1.20030421 + VSPrintListFromSeqLocs@Base 6.1.20030421 + VSPrintListIdLine@Base 6.1.20030421 + VSPrintOverviewFromSeqLocs@Base 6.1.20030421 + VSScreenSequence@Base 6.1.20030421 + VSScreenSequenceByLoc@Base 6.1.20030421 + W@Base 6.1.20030421 + WholeFeatFree@Base 6.1.20030421 + WholeFeatNew@Base 6.1.20030421 + WposComputation@Base 6.1.20030421 + Xfrag_print@Base 6.1.20030421 + ZeroNodes@Base 6.1.20030421 + act_get_eval@Base 6.1.20050429 + addScoresToSeqAlign@Base 6.1.20030421 + addSuffixToName@Base 6.1.20030421 + add_string_to_buffer@Base 6.1.20041020 + add_string_to_bufferEx@Base 6.1.20041020 + align@Base 6.1.20030421 + align_of_pattern@Base 6.1.20030421 + allocatePosFreqs@Base 6.1.20030421 + avl_List@Base 6.1.20030421 + avl_counter1@Base 6.1.20030421 + avl_counter2@Base 6.1.20030421 + avl_hist@Base 6.1.20030421 + avl_hitlist@Base 6.1.20030421 + bb@Base 6.1.20030421 + bbld_table@Base 6.1.20030421 + bdiag_prev@Base 6.1.20030421 + best_score@Base 6.1.20030421 + bfound@Base 6.1.20030421 + bit_engine_arr@Base 6.1.20030421 + bit_engine_firstbit@Base 6.1.20030421 + bit_engine_numofbits@Base 6.1.20030421 + blastMergeFilterLocs@Base 6.1.20030421 + blast_set_parameters@Base 6.1.20030421 + blastna_to_ncbi4na@Base 6.1.20030421 + blastool_fprintf@Base 6.1.20031028 + bli_c@Base 6.1.20030421 + bli_d@Base 6.1.20030421 + blink@Base 6.1.20030421 + bls@Base 6.1.20030421 + break_blast_job@Base 6.1.20030421 + bri@Base 6.1.20030421 + bscan@Base 6.1.20030421 + bscan_init@Base 6.1.20030421 + bucket@Base 6.1.20030421 + bxmlobjAsnLoad@Base 6.1.20030421 + calign@Base 6.1.20030421 + check_GIBB@Base 6.1.20030421 + check_strand_mol@Base 6.1.20030421 + check_whole@Base 6.1.20030421 + ckalloc@Base 6.1.20030421 + ckopen@Base 6.1.20030421 + class_print@Base 6.1.20030421 + clean_all_internal_repeats@Base 6.1.20030421 + clean_empty_seqalign@Base 6.1.20030421 + closewin@Base 6.1.20030421 + codes_initialised@Base 6.1.20030421 + col_code@Base 6.1.20030421 + col_int@Base 6.1.20030421 + combine_with_long_mismatches@Base 6.1.20030421 + compactSearchDestruct@Base 6.1.20030421 + compactSearchNew@Base 6.1.20030421 + compare_quals@Base 6.1.20030421 + compon@Base 6.1.20030421 + convertProgramToFlag@Base 6.1.20030421 + convertSeqAlignListToValNodeList@Base 6.1.20030421 + convertValNodeListToSeqAlignList@Base 6.1.20030421 + copyPosFreqs@Base 6.1.20030421 + copySearchItems@Base 6.1.20030421 + copy_m_stk_entry@Base 6.1.20030421 + copy_qvalue@Base 6.1.20030421 + cotl_win@Base 6.1.20030421 + cotr_merge@Base 6.1.20030421 + cotr_win@Base 6.1.20030421 + cotupdate_active@Base 6.1.20030421 + count_join@Base 6.1.20030421 + createFakeProtein@Base 6.1.20030421 + curS@Base 6.1.20030421 + cur_end1@Base 6.1.20030421 + cur_end@Base 6.1.20030421 + cur_key@Base 6.1.20030421 + cut@Base 6.1.20030421 + db_cur_key@Base 6.1.20030421 + db_delete@Base 6.1.20030421 + db_delete_next@Base 6.1.20030421 + db_freeList@Base 6.1.20030421 + db_init@Base 6.1.20030421 + db_insert@Base 6.1.20030421 + db_insert_next@Base 6.1.20030421 + db_key_next@Base 6.1.20030421 + db_lsearch@Base 6.1.20030421 + db_lsearch_next@Base 6.1.20030421 + db_newList@Base 6.1.20030421 + db_next@Base 6.1.20030421 + db_next_key@Base 6.1.20030421 + db_next_val@Base 6.1.20030421 + db_prev_key@Base 6.1.20030421 + db_prev_val@Base 6.1.20030421 + db_randomLevel@Base 6.1.20030421 + db_reset_pos@Base 6.1.20030421 + db_rsearch@Base 6.1.20030421 + db_rsearch_next@Base 6.1.20030421 + db_snext@Base 6.1.20030421 + db_sreset_pos@Base 6.1.20030421 + db_update_node@Base 6.1.20030421 + dblist_NIL_free@Base 6.1.20030421 + decre@Base 6.1.20030421 + decrementsv@Base 6.1.20030421 + delete_by_key@Base 6.1.20030421 + delete_next@Base 6.1.20030421 + deleted_frags@Base 6.1.20030421 + diag@Base 6.1.20030421 + diag_flag@Base 6.1.20030421 + diag_prev@Base 6.1.20030421 + disjoint@Base 6.1.20030421 + dna_len@Base 6.1.20030421 + dna_seq@Base 6.1.20030421 + do_the_blast_run@Base 6.1.20030421 + eValueFit@Base 6.1.20030421 + ecol@Base 6.1.20030421 + edit_script_append@Base 6.1.20030421 + edit_script_del@Base 6.1.20030421 + edit_script_free@Base 6.1.20030421 + edit_script_ins@Base 6.1.20030421 + edit_script_new@Base 6.1.20030421 + edit_script_rep@Base 6.1.20030421 + edit_script_reverse_inplace@Base 6.1.20030421 + encoding@Base 6.1.20030421 + end_col@Base 6.1.20030421 + end_row@Base 6.1.20030421 + ensure_consistent_set@Base 6.1.20030421 + enterS@Base 6.1.20030421 + enter_endcol@Base 6.1.20030421 + enter_endrow@Base 6.1.20030421 + enton@Base 6.1.20030421 + entropy@Base 6.1.20030421 + erow@Base 6.1.20030421 + err_message_mutex@Base 6.1.20030421 + evalue_compare_hits@Base 6.1.20030421 + ex_col@Base 6.1.20030421 + ex_row@Base 6.1.20030421 + ex_table@Base 6.1.20030421 + fOldMsgHook@Base 6.1.20030421 + falign@Base 6.1.20030421 + fatal@Base 6.1.20030421 + fatalf@Base 6.1.20030421 + fbld_table@Base 6.1.20030421 + feat_join@Base 6.1.20030421 + ffound@Base 6.1.20030421 + fillCandLambda@Base 6.1.20030421 + filter_blast_query@Base 6.1.20030421 + filter_repeats@Base 6.1.20030421 + filter_repeats_for_bigloc@Base 6.1.20030421 + findS@Base 6.1.20030421 + find_best_set@Base 6.1.20030421 + find_hits@Base 6.1.20030421 + find_id@Base 6.1.20030421 + findhi@Base 6.1.20030421 + findlo@Base 6.1.20030421 + findmaxS@Base 6.1.20030421 + fix_overlaps_by_splice_sites@Base 6.1.20030421 + fix_single_mismatches@Base 6.1.20030421 + fix_single_unassigned@Base 6.1.20030421 + found@Base 6.1.20030421 + frag_print@Base 6.1.20030421 + frame_compare_hsp_m1@Base 6.1.20030421 + frame_compare_hsp_m2@Base 6.1.20030421 + frame_compare_hsp_m3@Base 6.1.20030421 + frame_compare_hsp_p1@Base 6.1.20030421 + frame_compare_hsp_p2@Base 6.1.20030421 + frame_compare_hsp_p3@Base 6.1.20030421 + freeList@Base 6.1.20030421 + free_align_list@Base 6.1.20030421 + free_all@Base 6.1.20030421 + free_alu_list@Base 6.1.20030421 + free_mb_space@Base 6.1.20030421 + free_table@Base 6.1.20030421 + fscan@Base 6.1.20030421 + fscan_init@Base 6.1.20030421 + gap_cost@Base 6.1.20030421 + gband_l3gap@Base 6.1.20030421 + gband_linear@Base 6.1.20030421 + gband_linear_gap@Base 6.1.20030421 + gband_linear_qgap@Base 6.1.20030421 + gband_q3gap@Base 6.1.20030421 + gband_quadratic@Base 6.1.20030421 + getAlphaBeta@Base 6.1.20030421 + getCkptFreqMatrix@Base 6.1.20030421 + getCkptNumber@Base 6.1.20030421 + getFastaStyleTitle@Base 6.1.20030421 + getRes@Base 6.1.20030421 + getSplicePos@Base 6.1.20030421 + get_a_pat@Base 6.1.20030421 + get_align_score@Base 6.1.20030421 + get_hits@Base 6.1.20030421 + get_mb_space@Base 6.1.20030421 + get_organism@Base 6.1.20030421 + get_output_name@Base 6.1.20030421 + get_qvalue@Base 6.1.20030421 + get_score_value@Base 6.1.20030421 + get_top_K@Base 6.1.20030421 + get_top_K_alignment@Base 6.1.20030421 + getprob@Base 6.1.20030421 + global@Base 6.1.20030421 + global_setup@Base 6.1.20030421 + idb_freeList@Base 6.1.20030421 + idb_key_next@Base 6.1.20030421 + idb_newList@Base 6.1.20030421 + idb_reset_pos@Base 6.1.20030421 + impalaKarlinLambdaNR@Base 6.1.20030421 + impalaMakeFileNames@Base 6.1.20030421 + impalaReadCheckpoint@Base 6.1.20030421 + impalaScaling@Base 6.1.20030421 + incre@Base 6.1.20030421 + incrementsv@Base 6.1.20030421 + index_proc@Base 6.1.20030421 + init@Base 6.1.20030421 + initProbs@Base 6.1.20030421 + init_order@Base 6.1.20030421 + init_pattern@Base 6.1.20030421 + insertS@Base 6.1.20030421 + insert_hit@Base 6.1.20030421 + insert_next@Base 6.1.20030421 + intersect@Base 6.1.20030421 + intlist@Base 6.1.20030421 + isCommonIndex@Base 6.1.20030421 + is_CONTIG@Base 6.1.20030421 + is_EST_HUMAN@Base 6.1.20030421 + is_EST_MOUSE@Base 6.1.20030421 + is_EST_OTHERS@Base 6.1.20030421 + is_MONTH@Base 6.1.20030421 + is_PDB@Base 6.1.20030421 + is_REFSEQ@Base 6.1.20050828 + is_REFSEQ_GENOMIC@Base 6.1.20061015 + is_REFSEQ_RNA@Base 6.1.20060507 + is_SWISSPROT@Base 6.1.20030421 + is_acceptor@Base 6.1.20030421 + is_donor@Base 6.1.20030421 + kFDBMaxNumVolumes@Base 6.1.20060507 + kTaxidDeflineSearch_NotFound@Base 6.1.20050828 + l_merge@Base 6.1.20030421 + lactive_ext@Base 6.1.20030421 + lastS@Base 6.1.20030421 + laststr@Base 6.1.20030421 + len1@Base 6.1.20030421 + len2@Base 6.1.20030421 + li_c@Base 6.1.20030421 + li_d@Base 6.1.20030421 + link_align@Base 6.1.20030421 + link_blast_sap@Base 6.1.20030421 + list_NIL_free@Base 6.1.20030421 + ll1@Base 6.1.20030421 + ll@Base 6.1.20030421 + lnass@Base 6.1.20030421 + lnfac@Base 6.1.20030421 + lnperm@Base 6.1.20030421 + load_align_to_interval@Base 6.1.20030421 + load_dust_bsp@Base 6.1.20030421 + load_options_to_buffer@Base 6.1.20030421 + local@Base 6.1.20030421 + lookup_add@Base 6.1.20030421 + lookup_add_index@Base 6.1.20030421 + lookup_destruct@Base 6.1.20030421 + lookup_find_init@Base 6.1.20030421 + lookup_new@Base 6.1.20030421 + lookup_position_aux_destruct@Base 6.1.20030421 + lower@Base 6.1.20030421 + m_stk@Base 6.1.20030421 + m_top@Base 6.1.20030421 + make_align@Base 6.1.20030421 + make_dust_bsp@Base 6.1.20030421 + make_mod_lt@Base 6.1.20030421 + make_repeat_lib@Base 6.1.20030421 + make_sim_seq@Base 6.1.20030421 + malign1@Base 6.1.20030421 + malign@Base 6.1.20030421 + mask@Base 6.1.20030421 + mask_with_repeat_feature@Base 6.1.20030421 + mb_lookup_position_aux_destruct@Base 6.1.20030421 + mb_make_mod_lt@Base 6.1.20030421 + merge_blast_result@Base 6.1.20030421 + merge_two_list@Base 6.1.20030421 + mergesegs@Base 6.1.20030421 + mid1@Base 6.1.20030421 + mid2@Base 6.1.20030421 + minS@Base 6.1.20030421 + minscoreS@Base 6.1.20030421 + move_cds@Base 6.1.20030421 + move_cds_ex@Base 6.1.20030421 + mw@Base 6.1.20030421 + ncbi4na_to_blastna@Base 6.1.20030421 + newList@Base 6.1.20030421 + new_info@Base 6.1.20030421 + new_mb_space@Base 6.1.20030421 + next@Base 6.1.20030421 + next_key@Base 6.1.20030421 + next_val@Base 6.1.20030421 + number_frags@Base 6.1.20030421 + offset1@Base 6.1.20030421 + offset@Base 6.1.20030421 + old_i_end@Base 6.1.20030421 + old_i_start@Base 6.1.20030421 + old_j_end@Base 6.1.20030421 + old_j_start@Base 6.1.20030421 + openwin@Base 6.1.20030421 + otl_merge@Base 6.1.20030421 + otl_survive@Base 6.1.20030421 + otr_survive@Base 6.1.20030421 + outputPosMatrix@Base 6.1.20030421 + output_frags@Base 6.1.20030421 + output_hits@Base 6.1.20030421 + parse_blast_options@Base 6.1.20030421 + pat_output@Base 6.1.20030421 + pbf@Base 6.1.20030421 + pbo@Base 6.1.20030421 + per_mergesegs@Base 6.1.20030421 + pf_set@Base 6.1.20030421 + pff@Base 6.1.20030421 + pfo@Base 6.1.20030421 + posAllocateMemory@Base 6.1.20030421 + posCancel@Base 6.1.20030421 + posCheckWeights@Base 6.1.20030421 + posCheckpointFreeMemory@Base 6.1.20030421 + posCleanup@Base 6.1.20030421 + posComputeExtents@Base 6.1.20030421 + posComputePseudoFreqs@Base 6.1.20030421 + posComputeSequenceWeights@Base 6.1.20030421 + posConvergenceTest@Base 6.1.20030421 + posDemographics@Base 6.1.20040616 + posFreeInformation@Base 6.1.20030421 + posFreqsToMatrix@Base 6.1.20030421 + posInitializeInformation@Base 6.1.20030421 + posPrintInformation@Base 6.1.20030421 + posPurgeMatches@Base 6.1.20030421 + posReadCheckpoint@Base 6.1.20030421 + posScaling@Base 6.1.20030421 + posTakeCheckpoint@Base 6.1.20030421 + posTakeScoremat@Base 6.1.20041020 + pos_diag@Base 6.1.20030421 + power@Base 6.1.20030421 + prepare_align_data@Base 6.1.20030421 + printS@Base 6.1.20030421 + pro_len@Base 6.1.20030421 + pro_quicksort_hits@Base 6.1.20030421 + process_sep@Base 6.1.20030421 + prt_FASTA_file@Base 6.1.20030421 + pt_lscore@Base 6.1.20030421 + putScoresInSeqAlign@Base 6.1.20030421 + query_end_compare_hsp@Base 6.1.20030421 + query_offset_compare_hsp@Base 6.1.20030421 + quicksort_hits@Base 6.1.20030421 + r_add_point@Base 6.1.20030421 + r_merge@Base 6.1.20030421 + r_survive@Base 6.1.20030421 + ractive_ext@Base 6.1.20030421 + randomBits@Base 6.1.20030421 + randomLevel@Base 6.1.20030421 + randomsLeft@Base 6.1.20030421 + rcbld_table@Base 6.1.20030421 + rcblink@Base 6.1.20030421 + rcbls@Base 6.1.20030421 + rcbucket@Base 6.1.20030421 + rccol_int@Base 6.1.20030421 + rcdiag@Base 6.1.20030421 + rcdiag_flag@Base 6.1.20030421 + rcfound@Base 6.1.20030421 + rcfree@Base 6.1.20030421 + rcintersect@Base 6.1.20030421 + rclocal@Base 6.1.20030421 + rcpos_diag@Base 6.1.20030421 + rcpt_lscore@Base 6.1.20030421 + rcr_add_point@Base 6.1.20030421 + rcr_merge@Base 6.1.20030421 + rcupdate_active@Base 6.1.20030421 + readdb_MakeGiFileBinary@Base 6.1.20030421 + readdb_acc2fasta@Base 6.1.20030421 + readdb_acc2fastaEx@Base 6.1.20030421 + readdb_ambchar_present@Base 6.1.20030421 + readdb_attach@Base 6.1.20030421 + readdb_check_oid@Base 6.1.20081116 + readdb_compare@Base 6.1.20030421 + readdb_compare_basic@Base 6.1.20031028 + readdb_copy@Base 6.1.20030421 + readdb_destruct@Base 6.1.20030421 + readdb_destruct_element@Base 6.1.20030421 + readdb_get_ambchar@Base 6.1.20030421 + readdb_get_asn1_defline@Base 6.1.20030421 + readdb_get_bioseq@Base 6.1.20030421 + readdb_get_bioseq_ex@Base 6.1.20030421 + readdb_get_date@Base 6.1.20030421 + readdb_get_dblen@Base 6.1.20030421 + readdb_get_defline@Base 6.1.20030421 + readdb_get_descriptor@Base 6.1.20030421 + readdb_get_filebits@Base 6.1.20030421 + readdb_get_filename@Base 6.1.20030421 + readdb_get_formatdb_version@Base 6.1.20030421 + readdb_get_full_filename@Base 6.1.20080302 + readdb_get_header@Base 6.1.20030421 + readdb_get_header_ex@Base 6.1.20030421 + readdb_get_maxlen@Base 6.1.20030421 + readdb_get_num_entries@Base 6.1.20030421 + readdb_get_num_entries_total@Base 6.1.20030421 + readdb_get_num_entries_total_real@Base 6.1.20030421 + readdb_get_pig@Base 6.1.20030421 + readdb_get_sequence@Base 6.1.20030421 + readdb_get_sequence_ex@Base 6.1.20030421 + readdb_get_sequence_length@Base 6.1.20030421 + readdb_get_sequence_length_approx@Base 6.1.20040505 + readdb_get_sequence_number@Base 6.1.20030421 + readdb_get_stats_numbers@Base 6.1.20070822 + readdb_get_taxnames@Base 6.1.20030421 + readdb_get_taxonomy_names@Base 6.1.20030421 + readdb_get_title@Base 6.1.20030421 + readdb_get_totals@Base 6.1.20030421 + readdb_get_totals_ex2@Base 6.1.20030421 + readdb_get_totals_ex3@Base 6.1.20040505 + readdb_get_totals_ex@Base 6.1.20030421 + readdb_gi2seq@Base 6.1.20030421 + readdb_is_prot@Base 6.1.20030421 + readdb_madvise_block@Base 6.1.20030421 + readdb_madvise_enable@Base 6.1.20030421 + readdb_madvise_sync_mode@Base 6.1.20030421 + readdb_madvise_type@Base 6.1.20030421 + readdb_new@Base 6.1.20030421 + readdb_new_ex2@Base 6.1.20030421 + readdb_new_ex@Base 6.1.20030421 + readdb_parse_db_names@Base 6.1.20030421 + readdb_pig2oid@Base 6.1.20030421 + readdb_preload@Base 6.1.20030421 + readdb_seqid2fasta@Base 6.1.20030421 + readdb_sequence_hash@Base 6.1.20060507 + readdb_validate@Base 6.1.20060301 + recom_setup@Base 6.1.20030421 + recompute@Base 6.1.20030421 + refresh_mb_space@Base 6.1.20030421 + remove_OrgMod@Base 6.1.20030421 + remove_descr@Base 6.1.20030421 + remove_qual@Base 6.1.20030421 + remove_redundant_intervals@Base 6.1.20030421 + remove_subtype@Base 6.1.20030421 + remove_xref@Base 6.1.20030421 + replaceS@Base 6.1.20030421 + reset_pos@Base 6.1.20030421 + resolve@Base 6.1.20030421 + restore_blast_id@Base 6.1.20030421 + rev_seq@Base 6.1.20030421 + reverse_seq@Base 6.1.20030421 + rffound@Base 6.1.20030421 + rfscan@Base 6.1.20030421 + ri@Base 6.1.20030421 + rotl_win@Base 6.1.20030421 + rotr_merge@Base 6.1.20030421 + rotr_win@Base 6.1.20030421 + rotupdate_active@Base 6.1.20030421 + row_code@Base 6.1.20030421 + rr@Base 6.1.20030421 + rsearch@Base 6.1.20030421 + rsearch_next@Base 6.1.20030421 + save_SeqAnnot@Base 6.1.20030421 + sb1@Base 6.1.20030421 + sb2@Base 6.1.20030421 + scan@Base 6.1.20030421 + scan_to_break@Base 6.1.20030421 + score_compare_hsps@Base 6.1.20030421 + se1@Base 6.1.20030421 + se2@Base 6.1.20030421 + search_pat@Base 6.1.20030421 + seedEngineCore@Base 6.1.20030421 + seed_free_all@Base 6.1.20030421 + seq1@Base 6.1.20030421 + seq2@Base 6.1.20030421 + seq_loc_compare@Base 6.1.20030421 + seq_phase@Base 6.1.20030421 + seqent@Base 6.1.20030421 + set_class@Base 6.1.20030421 + setup@Base 6.1.20030421 + shiftwin1@Base 6.1.20030421 + sim_for_blast@Base 6.1.20030421 + sizeS@Base 6.1.20030421 + slp_callback@Base 6.1.20030421 + snext@Base 6.1.20030421 + sort_align_list@Base 6.1.20030421 + split_target_seq@Base 6.1.20030421 + sreset_pos@Base 6.1.20030421 + stateon@Base 6.1.20030421 + storeOneMatch@Base 6.1.20030421 + strsame@Base 6.1.20030421 + suggestError@Base 6.1.20030421 + suggestOut@Base 6.1.20030421 + suggestRec@Base 6.1.20030421 + syn_area@Base 6.1.20030421 + table_init@Base 6.1.20030421 + tailor@Base 6.1.20030421 + tie_feat@Base 6.1.20030421 + tie_next_OrgMod@Base 6.1.20030421 + tie_next_biosource@Base 6.1.20030421 + tie_next_cbp@Base 6.1.20030421 + tie_next_mol@Base 6.1.20030421 + tie_next_subtype@Base 6.1.20030421 + time_out_boolean@Base 6.1.20030421 + topo_win@Base 6.1.20030421 + toporg@Base 6.1.20030421 + total_frags@Base 6.1.20030421 + trcfound@Base 6.1.20030421 + trcscan@Base 6.1.20030421 + trim@Base 6.1.20030421 + true_multiple@Base 6.1.20030421 + true_qual@Base 6.1.20030421 + tt1@Base 6.1.20030421 + tt@Base 6.1.20030421 + type@Base 6.1.20030421 + ufreeList@Base 6.1.20030421 + uinsert@Base 6.1.20030421 + unewList@Base 6.1.20030421 + unpack_dna_seq@Base 6.1.20030421 + updateLambdaK@Base 6.1.20030421 + update_active@Base 6.1.20030421 + update_node@Base 6.1.20030421 + upper@Base 6.1.20030421 + urkFilterSeq@Base 6.1.20030421 + usearch@Base 6.1.20030421 + used_frag@Base 6.1.20030421 + vx@Base 6.1.20030421 + weight@Base 6.1.20030421 + write_asn_output@Base 6.1.20030421 + write_sim_output@Base 6.1.20030421 + z_ALIGN@Base 6.1.20030421 +libncbitxc2.so.6 libncbi6 #MINVER# + CheckTaxId@Base 6.1.20030421 + CloseTaxDB@Base 6.1.20030421 + FDBTaxCallback@Base 6.1.20030421 + GetSuperKingdom@Base 6.1.20030421 + GetTaxserverOrg@Base 6.1.20030421 + InitTaxDB@Base 6.1.20030421 + RDTaxLookupClose@Base 6.1.20030421 + RDTaxLookupInit@Base 6.1.20030421 + RDTaxLookupReset@Base 6.1.20030421 + TXBGetDefLine@Base 6.1.20030421 + TXBHtmlReport@Base 6.1.20030421 + TaxArchFini@Base 6.1.20030421 + TaxArchInit@Base 6.1.20030421 + TaxMergeBSinDescr@Base 6.1.20030421 + Taxon1DataAsnRead@Base 6.1.20030421 + Taxon1DataAsnWrite@Base 6.1.20030421 + Taxon1DataFree@Base 6.1.20030421 + Taxon1DataNew@Base 6.1.20030421 + Taxon1ErrorAsnRead@Base 6.1.20030421 + Taxon1ErrorAsnWrite@Base 6.1.20030421 + Taxon1ErrorFree@Base 6.1.20030421 + Taxon1ErrorNew@Base 6.1.20030421 + Taxon1InfoAsnRead@Base 6.1.20030421 + Taxon1InfoAsnWrite@Base 6.1.20030421 + Taxon1InfoFree@Base 6.1.20030421 + Taxon1InfoNew@Base 6.1.20030421 + Taxon1NameAsnRead@Base 6.1.20030421 + Taxon1NameAsnWrite@Base 6.1.20030421 + Taxon1NameFree@Base 6.1.20030421 + Taxon1NameNew@Base 6.1.20030421 + Taxon1ReqAsnRead@Base 6.1.20030421 + Taxon1ReqAsnWrite@Base 6.1.20030421 + Taxon1ReqFree@Base 6.1.20030421 + Taxon1RespAsnRead@Base 6.1.20030421 + Taxon1RespAsnWrite@Base 6.1.20030421 + Taxon1RespFree@Base 6.1.20030421 + Taxon2DataAsnRead@Base 6.1.20030421 + Taxon2DataAsnWrite@Base 6.1.20030421 + Taxon2DataFree@Base 6.1.20030421 + Taxon2DataNew@Base 6.1.20030421 + check_org_ref@Base 6.1.20030421 + get_embl_code@Base 6.1.20030421 + get_gcode@Base 6.1.20030421 + get_gcode_from_lineage@Base 6.1.20030421 + get_lineage@Base 6.1.20030421 + get_tax_division@Base 6.1.20030421 + get_tax_org@Base 6.1.20030421 + objtax1AsnLoad@Base 6.1.20030421 + replace_org@Base 6.1.20030421 + replace_org_err@Base 6.1.20030421 + tax1_findAllTaxIdByName@Base 6.1.20030421 + tax1_findTaxIdByName@Base 6.1.20030421 + tax1_fini@Base 6.1.20030421 + tax1_getAllNames@Base 6.1.20030421 + tax1_getAllTaxIdByName@Base 6.1.20030421 + tax1_getChildren@Base 6.1.20030421 + tax1_getGCName@Base 6.1.20030421 + tax1_getGenus@Base 6.1.20030421 + tax1_getOrgRef@Base 6.1.20030421 + tax1_getParent@Base 6.1.20030421 + tax1_getTaxId4GI@Base 6.1.20030421 + tax1_getTaxId4Str@Base 6.1.20030421 + tax1_getTaxIdByName@Base 6.1.20030421 + tax1_getTaxIdByOrgRef@Base 6.1.20030421 + tax1_getbyid@Base 6.1.20030421 + tax1_init@Base 6.1.20030421 + tax1_inited@Base 6.1.20030421 + tax1_isAlive@Base 6.1.20030421 + tax1_join@Base 6.1.20030421 + tax1_lookup@Base 6.1.20030421 + tax1_setSynonyms@Base 6.1.20030421 + tax1e_getTaxId@Base 6.1.20030421 + tax1e_getTaxName@Base 6.1.20030421 + tax1e_getTaxTreePtr@Base 6.1.20030421 + tax1e_invokeChildren@Base 6.1.20030421 + tax1e_invokeNode@Base 6.1.20030421 + tax1e_maxTaxId@Base 6.1.20030421 + tax1e_needUpdate@Base 6.1.20030421 + tax1e_toNode@Base 6.1.20030421 + tax1m_getBlastName@Base 6.1.20030421 + tax1m_getOrgRef@Base 6.1.20030421 + tax1m_getbyid@Base 6.1.20030421 + tax1m_lookup@Base 6.1.20030421 + tax_SSget@Base 6.1.20030421 + tax_addDivision@Base 6.1.20030421 + tax_addGC@Base 6.1.20030421 + tax_addNameClass@Base 6.1.20030421 + tax_addRank@Base 6.1.20030421 + tax_dumpDivisions@Base 6.1.20030421 + tax_dumpGCs@Base 6.1.20030421 + tax_dumpNameClasses@Base 6.1.20030421 + tax_dumpRanks@Base 6.1.20030421 + tax_findByName@Base 6.1.20030421 + tax_getBaseTime@Base 6.1.20030421 + tax_getClass_cde@Base 6.1.20030421 + tax_getDesignator@Base 6.1.20030421 + tax_getDivision@Base 6.1.20030421 + tax_getDivisionId@Base 6.1.20030421 + tax_getGCId@Base 6.1.20030421 + tax_getGCName@Base 6.1.20030421 + tax_getIdByName@Base 6.1.20030421 + tax_getNameClass@Base 6.1.20030421 + tax_getOrgNames@Base 6.1.20030421 + tax_getRank@Base 6.1.20030421 + tax_getRankId@Base 6.1.20030421 + tax_getTaxId4GI@Base 6.1.20030421 + tax_getTime@Base 6.1.20030421 + tax_init@Base 6.1.20030421 + tax_prntTime@Base 6.1.20030421 + tax_ptree_addChildren@Base 6.1.20030421 + tax_ptree_addNode@Base 6.1.20030421 + tax_ptree_addSubtree@Base 6.1.20030421 + tax_ptree_new@Base 6.1.20030421 + tax_ptree_toTaxId@Base 6.1.20030421 + tax_uniqueName@Base 6.1.20030421 + taxname_match@Base 6.1.20030421 + taxname_replace@Base 6.1.20030421 + txc_close@Base 6.1.20030421 + txc_connect2Server@Base 6.1.20030421 + txc_findByOrg@Base 6.1.20030421 + txc_getChildren@Base 6.1.20030421 + txc_getLineage@Base 6.1.20030421 + txc_getTaxIdByOrgRef@Base 6.1.20030421 + txc_loadDivisions@Base 6.1.20030421 + txc_loadGCs@Base 6.1.20030421 + txc_loadNameClasses@Base 6.1.20030421 + txc_loadRanks@Base 6.1.20030421 +libnetblast.so.6 libncbi6 #MINVER# + BLASTGetUidsFromQuery@Base 6.1.20030421 + Blast3GetDbinfo@Base 6.1.20030421 + Blast3GetMotd@Base 6.1.20030421 + BlastBioseq@Base 6.1.20030421 + BlastBioseqNet@Base 6.1.20030421 + BlastBioseqNetCore@Base 6.1.20030421 + BlastBioseqNetReturnParts@Base 6.1.20030421 + BlastDbinfoAsnRead@Base 6.1.20030421 + BlastDbinfoAsnWrite@Base 6.1.20030421 + BlastDbinfoFree@Base 6.1.20030421 + BlastDbinfoGetAsnRead@Base 6.1.20030421 + BlastDbinfoGetAsnWrite@Base 6.1.20030421 + BlastDbinfoGetFree@Base 6.1.20030421 + BlastDbinfoGetNew@Base 6.1.20030421 + BlastDbinfoNew@Base 6.1.20030421 + BlastDeflineAsnRead@Base 6.1.20030421 + BlastDeflineAsnWrite@Base 6.1.20030421 + BlastDeflineFree@Base 6.1.20030421 + BlastDeflineNew@Base 6.1.20030421 + BlastErrorAsnRead@Base 6.1.20030421 + BlastErrorAsnWrite@Base 6.1.20030421 + BlastErrorFree@Base 6.1.20030421 + BlastErrorNew@Base 6.1.20030421 + BlastFini@Base 6.1.20030421 + BlastGetBioseq@Base 6.1.20030421 + BlastGetDbInfo@Base 6.1.20030421 + BlastGetKaParams@Base 6.1.20030421 + BlastGetMaskedLoc@Base 6.1.20030421 + BlastGetParameterBuffer@Base 6.1.20030421 + BlastInit@Base 6.1.20030421 + BlastKABlkAsnRead@Base 6.1.20030421 + BlastKABlkAsnWrite@Base 6.1.20030421 + BlastKABlkFree@Base 6.1.20030421 + BlastKABlkNew@Base 6.1.20030421 + BlastMaskAsnRead@Base 6.1.20030421 + BlastMaskAsnWrite@Base 6.1.20030421 + BlastMaskFree@Base 6.1.20030421 + BlastMaskNew@Base 6.1.20030421 + BlastMatrixAsnRead@Base 6.1.20030421 + BlastMatrixAsnWrite@Base 6.1.20030421 + BlastMatrixFree@Base 6.1.20030421 + BlastMatrixNew@Base 6.1.20030421 + BlastMatrixToBlastNetMatrix@Base 6.1.20030421 + BlastNet3BlockDestruct@Base 6.1.20030421 + BlastNet3BlockNew@Base 6.1.20030421 + BlastNetBioseqFetchDisable@Base 6.1.20030421 + BlastNetBioseqFetchEnable@Base 6.1.20030421 + BlastNetMatrixToBlastMatrix@Base 6.1.20030421 + BlastOptionsToParameters@Base 6.1.20030421 + BlastParametersAsnRead@Base 6.1.20030421 + BlastParametersAsnWrite@Base 6.1.20030421 + BlastParametersFree@Base 6.1.20030421 + BlastParametersNew@Base 6.1.20030421 + BlastPartsAsnRead@Base 6.1.20030421 + BlastPartsAsnWrite@Base 6.1.20030421 + BlastPartsFree@Base 6.1.20030421 + BlastPartsNew@Base 6.1.20030421 + BlastPhialignAsnRead@Base 6.1.20030421 + BlastPhialignAsnWrite@Base 6.1.20030421 + BlastPhialignFree@Base 6.1.20030421 + BlastPhialignNew@Base 6.1.20030421 + BlastProgressAsnRead@Base 6.1.20030421 + BlastProgressAsnWrite@Base 6.1.20030421 + BlastProgressFree@Base 6.1.20030421 + BlastProgressNew@Base 6.1.20030421 + BlastQueuedAsnRead@Base 6.1.20030421 + BlastQueuedAsnWrite@Base 6.1.20030421 + BlastQueuedFree@Base 6.1.20030421 + BlastQueuedNew@Base 6.1.20030421 + BlastRequestAsnRead@Base 6.1.20030421 + BlastRequestAsnWrite@Base 6.1.20030421 + BlastRequestDbInfo@Base 6.1.20030421 + BlastRequestFree@Base 6.1.20030421 + BlastResponseAsnRead@Base 6.1.20030421 + BlastResponseAsnWrite@Base 6.1.20030421 + BlastResponseFree@Base 6.1.20030421 + BlastSearchAsnRead@Base 6.1.20030421 + BlastSearchAsnWrite@Base 6.1.20030421 + BlastSearchFree@Base 6.1.20030421 + BlastSearchNew@Base 6.1.20030421 + BlastSeqIdAsnRead@Base 6.1.20030421 + BlastSeqIdAsnWrite@Base 6.1.20030421 + BlastSeqIdFree@Base 6.1.20030421 + BlastSeqIdNew@Base 6.1.20030421 + BlastSeqLocNet@Base 6.1.20030421 + BlastSeqLocNetCore@Base 6.1.20030421 + BlastSequenceAsnRead@Base 6.1.20030421 + BlastSequenceAsnWrite@Base 6.1.20030421 + BlastSequenceFree@Base 6.1.20030421 + BlastSequenceNew@Base 6.1.20030421 + BlastVersionAsnRead@Base 6.1.20030421 + BlastVersionAsnWrite@Base 6.1.20030421 + BlastVersionFree@Base 6.1.20030421 + BlastVersionNew@Base 6.1.20030421 + GetResponsePtr@Base 6.1.20030421 + MegaBlastHitAsnRead@Base 6.1.20030421 + MegaBlastHitAsnWrite@Base 6.1.20030421 + MegaBlastHitFree@Base 6.1.20030421 + MegaBlastHitNew@Base 6.1.20030421 + MegaBlastResultsAsnRead@Base 6.1.20030421 + MegaBlastResultsAsnWrite@Base 6.1.20030421 + MegaBlastResultsFree@Base 6.1.20030421 + MegaBlastResultsNew@Base 6.1.20030421 + MegaBlastSeqLocNetCore@Base 6.1.20030421 + NetBlastGetMatrix@Base 6.1.20030421 + NetDbinfo2TxDbinfo@Base 6.1.20030421 + QueryIsProteinFromType@Base 6.1.20030421 + SeedBioseqNetCore@Base 6.1.20030421 + SubmitRequest@Base 6.1.20030421 + TraditionalBlastReport@Base 6.1.20030421 + TraditionalBlastReportExtra@Base 6.1.20030421 + TraditionalBlastReportLoc@Base 6.1.20030421 + TraditionalBlastReportLocExtra@Base 6.1.20030421 + dispatcher_lock@Base 6.1.20030421 + objblst3AsnLoad@Base 6.1.20030421 + parametersToOptions@Base 6.1.20030421 +libnetcli.so.6 libncbi6 #MINVER# + NI_EndServices@Base 6.1.20030421 + NI_GenericGetService@Base 6.1.20030421 + NI_GenericInit@Base 6.1.20030421 + NI_GetEnvParam@Base 6.1.20030421 + NI_GetEnvParamEx@Base 6.1.20030421 + NI_IsInterfaceSupported@Base 6.1.20030421 + NI_ServiceDisconnect@Base 6.1.20030421 + NI_SetAddress@Base 6.1.20030421 + NI_SetDispatcher@Base 6.1.20030421 + NI_SetInterface@Base 6.1.20030421 + g_NII_Debug@Base 6.1.20030421 + g_NII_Service@Base 6.1.20030421 + x_ni_errlist@Base 6.1.20030421 + x_ni_errno@Base 6.1.20030421 + x_ni_errtext@Base 6.1.20030421 + x_ni_platform@Base 6.1.20030421 +libvibgif.so.6 libncbi6 #MINVER# + AddOval@Base 6.1.20030421 + BLACK_COLOR@Base 6.1.20030421 + BLUE_COLOR@Base 6.1.20030421 + CYAN_COLOR@Base 6.1.20030421 + GREEN_COLOR@Base 6.1.20030421 + MAGENTA_COLOR@Base 6.1.20030421 + Nlm_AddArc@Base 6.1.20030421 + Nlm_AddAttribute@Base 6.1.20030421 + Nlm_AddBitmap@Base 6.1.20030421 + Nlm_AddInvFrame@Base 6.1.20030421 + Nlm_AddLabel@Base 6.1.20030421 + Nlm_AddLine@Base 6.1.20030421 + Nlm_AddMarker@Base 6.1.20030421 + Nlm_AddPolygon@Base 6.1.20030421 + Nlm_AddPrimitive@Base 6.1.20030421 + Nlm_AddPt@Base 6.1.20030421 + Nlm_AddRectangle@Base 6.1.20030421 + Nlm_AddRoundedRectangle@Base 6.1.20030421 + Nlm_AddSegRect@Base 6.1.20030421 + Nlm_AddSilentSegRect@Base 6.1.20030421 + Nlm_AddSntRectangle@Base 6.1.20030421 + Nlm_AddSymbol@Base 6.1.20030421 + Nlm_AddTextLabel@Base 6.1.20030421 + Nlm_Ascent@Base 6.1.20030421 + Nlm_AssignPrinterFont@Base 6.1.20030421 + Nlm_Black@Base 6.1.20030421 + Nlm_Blue@Base 6.1.20030421 + Nlm_BoxInViewport@Base 6.1.20030421 + Nlm_ChangeAddPrimOrder@Base 6.1.20030421 + Nlm_ChangePrimAttribute@Base 6.1.20030421 + Nlm_ChangeSentinelRectangle@Base 6.1.20030421 + Nlm_CharWidth@Base 6.1.20030421 + Nlm_CleanUpDrawingTools@Base 6.1.20030421 + Nlm_CleanupPrimitive@Base 6.1.20030421 + Nlm_ClearRgn@Base 6.1.20030421 + Nlm_ClipRect@Base 6.1.20030421 + Nlm_ClipRgn@Base 6.1.20030421 + Nlm_CopyBits@Base 6.1.20030421 + Nlm_CopyFont@Base 6.1.20030421 + Nlm_CopyMode@Base 6.1.20030421 + Nlm_CopyPixmap@Base 6.1.20030421 + Nlm_Courier@Base 6.1.20030421 + Nlm_CreateFont@Base 6.1.20030421 + Nlm_CreateGIF@Base 6.1.20030421 + Nlm_CreatePicture@Base 6.1.20030421 + Nlm_CreateRgn@Base 6.1.20030421 + Nlm_CreateSegment@Base 6.1.20030421 + Nlm_Cyan@Base 6.1.20030421 + Nlm_Dark@Base 6.1.20030421 + Nlm_Dashed@Base 6.1.20030421 + Nlm_DecodeColor@Base 6.1.20030421 + Nlm_DeleteFont@Base 6.1.20030421 + Nlm_DeletePicture@Base 6.1.20030421 + Nlm_DeletePrim@Base 6.1.20030421 + Nlm_DeleteSegment@Base 6.1.20030421 + Nlm_Descent@Base 6.1.20030421 + Nlm_DestroyGIF@Base 6.1.20030421 + Nlm_DestroyRgn@Base 6.1.20030421 + Nlm_DiffRgn@Base 6.1.20030421 + Nlm_DkGray@Base 6.1.20030421 + Nlm_Dotted@Base 6.1.20030421 + Nlm_DrawLine@Base 6.1.20030421 + Nlm_DrawPrimitive@Base 6.1.20030421 + Nlm_DrawSegment@Base 6.1.20030421 + Nlm_DrawString@Base 6.1.20030421 + Nlm_DrawText@Base 6.1.20030421 + Nlm_Empty@Base 6.1.20030421 + Nlm_EmptyRect@Base 6.1.20030421 + Nlm_EmptyRgn@Base 6.1.20030421 + Nlm_EqualFontSpec@Base 6.1.20030421 + Nlm_EqualPt@Base 6.1.20030421 + Nlm_EqualRect@Base 6.1.20030421 + Nlm_EqualRgn@Base 6.1.20030421 + Nlm_EraseArc@Base 6.1.20030421 + Nlm_EraseMode@Base 6.1.20030421 + Nlm_EraseOval@Base 6.1.20030421 + Nlm_ErasePoly@Base 6.1.20030421 + Nlm_EraseQuadrant@Base 6.1.20030421 + Nlm_EraseRect@Base 6.1.20030421 + Nlm_EraseRgn@Base 6.1.20030421 + Nlm_EraseRoundRect@Base 6.1.20030421 + Nlm_ExploreSegment@Base 6.1.20030421 + Nlm_FindNextResidentFont@Base 6.1.20030421 + Nlm_FindPrimGIF@Base 6.1.20030421 + Nlm_FindSegGIF@Base 6.1.20030421 + Nlm_FitStringWidth@Base 6.1.20030421 + Nlm_FontHeight@Base 6.1.20030421 + Nlm_FrameArc@Base 6.1.20030421 + Nlm_FrameOval@Base 6.1.20030421 + Nlm_FramePoly@Base 6.1.20030421 + Nlm_FrameQuadrant@Base 6.1.20030421 + Nlm_FrameRect@Base 6.1.20030421 + Nlm_FrameRgn@Base 6.1.20030421 + Nlm_FrameRoundRect@Base 6.1.20030421 + Nlm_GetColor@Base 6.1.20030421 + Nlm_GetColorRGB@Base 6.1.20030421 + Nlm_GetFont@Base 6.1.20030421 + Nlm_GetFontEx@Base 6.1.20030421 + Nlm_GetFontSpec@Base 6.1.20030421 + Nlm_GetHitWindow@Base 6.1.20030421 + Nlm_GetOffsetX@Base 6.1.20030421 + Nlm_GetOffsetY@Base 6.1.20030421 + Nlm_GetPen@Base 6.1.20030421 + Nlm_GetPrimDrawAttribute@Base 6.1.20030421 + Nlm_GetPrimHligh@Base 6.1.20030421 + Nlm_GetPrimitive@Base 6.1.20030421 + Nlm_GetPrimitiveIDs@Base 6.1.20030421 + Nlm_GetResidentFont@Base 6.1.20030421 + Nlm_GetScaleX@Base 6.1.20030421 + Nlm_GetScaleY@Base 6.1.20030421 + Nlm_GetWorldWindow@Base 6.1.20030421 + Nlm_Gothic@Base 6.1.20030421 + Nlm_GothicFixed@Base 6.1.20030421 + Nlm_Gray@Base 6.1.20030421 + Nlm_Green@Base 6.1.20030421 + Nlm_Helvetica@Base 6.1.20030421 + Nlm_InsetRect@Base 6.1.20030421 + Nlm_InvalRect@Base 6.1.20030421 + Nlm_InvalRgn@Base 6.1.20030421 + Nlm_InvertArc@Base 6.1.20030421 + Nlm_InvertColors@Base 6.1.20030421 + Nlm_InvertMode@Base 6.1.20030421 + Nlm_InvertOval@Base 6.1.20030421 + Nlm_InvertPoly@Base 6.1.20030421 + Nlm_InvertQuadrant@Base 6.1.20030421 + Nlm_InvertRect@Base 6.1.20030421 + Nlm_InvertRgn@Base 6.1.20030421 + Nlm_InvertRoundRect@Base 6.1.20030421 + Nlm_IsLineInVPort@Base 6.1.20030421 + Nlm_Leading@Base 6.1.20030421 + Nlm_Light@Base 6.1.20030421 + Nlm_LineHeight@Base 6.1.20030421 + Nlm_LineIntoVPort@Base 6.1.20030421 + Nlm_LineTo@Base 6.1.20030421 + Nlm_LinkSegment@Base 6.1.20030421 + Nlm_LoadBox@Base 6.1.20030421 + Nlm_LoadPt@Base 6.1.20030421 + Nlm_LoadRect@Base 6.1.20030421 + Nlm_LoadRectRgn@Base 6.1.20030421 + Nlm_LtGray@Base 6.1.20030421 + Nlm_Magenta@Base 6.1.20030421 + Nlm_MapPixelPointToWorld@Base 6.1.20030421 + Nlm_MapRectToWorldBox@Base 6.1.20030421 + Nlm_MapWorldBoxToRect@Base 6.1.20030421 + Nlm_MapWorldPointToPixel@Base 6.1.20030421 + Nlm_MaxCharWidth@Base 6.1.20030421 + Nlm_Medium@Base 6.1.20030421 + Nlm_MergeMode@Base 6.1.20030421 + Nlm_Minchou@Base 6.1.20030421 + Nlm_MinchouFixed@Base 6.1.20030421 + Nlm_MoveTo@Base 6.1.20030421 + Nlm_NormalizeBox@Base 6.1.20030421 + Nlm_OffsetPrim@Base 6.1.20030421 + Nlm_OffsetRect@Base 6.1.20030421 + Nlm_OffsetRgn@Base 6.1.20030421 + Nlm_OffsetSegment@Base 6.1.20030421 + Nlm_OutsetBox@Base 6.1.20030421 + Nlm_PaintArc@Base 6.1.20030421 + Nlm_PaintChar@Base 6.1.20030421 + Nlm_PaintOval@Base 6.1.20030421 + Nlm_PaintPoly@Base 6.1.20030421 + Nlm_PaintQuadrant@Base 6.1.20030421 + Nlm_PaintRect@Base 6.1.20030421 + Nlm_PaintRgn@Base 6.1.20030421 + Nlm_PaintRoundRect@Base 6.1.20030421 + Nlm_PaintString@Base 6.1.20030421 + Nlm_PaintStringEx@Base 6.1.20030421 + Nlm_PaintText@Base 6.1.20030421 + Nlm_ParentSegment@Base 6.1.20030421 + Nlm_ParseFont@Base 6.1.20030421 + Nlm_ParseFontEx@Base 6.1.20030421 + Nlm_Picture2gdImage@Base 6.1.20030421 + Nlm_PictureToGIF@Base 6.1.20030421 + Nlm_PrimitiveBox@Base 6.1.20030421 + Nlm_PrimitiveIsCloseToPoint@Base 6.1.20030421 + Nlm_PtInRect@Base 6.1.20030421 + Nlm_PtInRgn@Base 6.1.20030421 + Nlm_RecalculateSegment@Base 6.1.20030421 + Nlm_RectInRect@Base 6.1.20030421 + Nlm_RectInRgn@Base 6.1.20030421 + Nlm_Red@Base 6.1.20030421 + Nlm_ResetClip@Base 6.1.20030421 + Nlm_ResetDrawingTools@Base 6.1.20030421 + Nlm_ResetSegment@Base 6.1.20030421 + Nlm_RestorePrimAttribute@Base 6.1.20030421 + Nlm_SaveGIF@Base 6.1.20030421 + Nlm_ScrollRect@Base 6.1.20030421 + Nlm_SearchSegment@Base 6.1.20030421 + Nlm_SectRect@Base 6.1.20030421 + Nlm_SectRgn@Base 6.1.20030421 + Nlm_SegmentBox@Base 6.1.20030421 + Nlm_SegmentID@Base 6.1.20030421 + Nlm_SegmentStyle@Base 6.1.20030421 + Nlm_SegmentVisible@Base 6.1.20030421 + Nlm_SelectColor@Base 6.1.20030421 + Nlm_SelectFont@Base 6.1.20030421 + Nlm_SetColor@Base 6.1.20030421 + Nlm_SetColorEx@Base 6.1.20030421 + Nlm_SetCurrentGIF@Base 6.1.20030421 + Nlm_SetDefArrowSize@Base 6.1.20030421 + Nlm_SetLargeFont@Base 6.1.20030421 + Nlm_SetMediumFont@Base 6.1.20030421 + Nlm_SetPen@Base 6.1.20030421 + Nlm_SetPenDash@Base 6.1.20030421 + Nlm_SetPenPattern@Base 6.1.20030421 + Nlm_SetPenWidth@Base 6.1.20080302 + Nlm_SetPrimAttribute@Base 6.1.20030421 + Nlm_SetPrimitiveIDs@Base 6.1.20030421 + Nlm_SetSegmentVisibleFlag@Base 6.1.20030421 + Nlm_SetSmallFont@Base 6.1.20030421 + Nlm_SetUpDrawingTools@Base 6.1.20030421 + Nlm_Solid@Base 6.1.20030421 + Nlm_StringWidth@Base 6.1.20030421 + Nlm_SubPt@Base 6.1.20030421 + Nlm_Symbol@Base 6.1.20030421 + Nlm_TextWidth@Base 6.1.20030421 + Nlm_Times@Base 6.1.20030421 + Nlm_TryGetPrimitiveLimits@Base 6.1.20030421 + Nlm_TryHighlightPrimitive@Base 6.1.20030421 + Nlm_TryOffsetPrimitive@Base 6.1.20030421 + Nlm_UnionRect@Base 6.1.20030421 + Nlm_UnionRgn@Base 6.1.20030421 + Nlm_UnlinkSegment@Base 6.1.20030421 + Nlm_UpdateColorTable@Base 6.1.20030421 + Nlm_UpsetRect@Base 6.1.20030421 + Nlm_ValidRect@Base 6.1.20030421 + Nlm_ValidRgn@Base 6.1.20030421 + Nlm_VibrantIsGUI@Base 6.1.20030421 + Nlm_VibrantSetGUI@Base 6.1.20030421 + Nlm_White@Base 6.1.20030421 + Nlm_WidePen@Base 6.1.20030421 + Nlm_XorRgn@Base 6.1.20030421 + Nlm_Yellow@Base 6.1.20030421 + Nlm_isPrimInWindow@Base 6.1.20030421 + Nlm_largeFont@Base 6.1.20030421 + Nlm_mediumFont@Base 6.1.20030421 + Nlm_nowPrinting@Base 6.1.20030421 + Nlm_programFont@Base 6.1.20030421 + Nlm_smallFont@Base 6.1.20030421 + Nlm_stdAscent@Base 6.1.20030421 + Nlm_stdCharWidth@Base 6.1.20030421 + Nlm_stdDescent@Base 6.1.20030421 + Nlm_stdFontHeight@Base 6.1.20030421 + Nlm_stdLeading@Base 6.1.20030421 + Nlm_stdLineHeight@Base 6.1.20030421 + Nlm_systemFont@Base 6.1.20030421 + Nlm_updateRect@Base 6.1.20030421 + Nlm_updateRgn@Base 6.1.20030421 + RED_COLOR@Base 6.1.20030421 + WHITE_COLOR@Base 6.1.20030421 + YELLOW_COLOR@Base 6.1.20030421 + blackAttPData@Base 6.1.20030421 + gdFont5X8@Base 6.1.20030421 + gdFont6X12@Base 6.1.20030421 + gdFont7X13b@Base 6.1.20030421 + gdFont8X16@Base 6.1.20030421 + gdFont9X15b@Base 6.1.20030421 + main@Base 6.1.20030421 + whiteAttPData@Base 6.1.20030421 diff --git a/debian/libvibrant6-dev.install b/debian/libvibrant6-dev.install new file mode 100644 index 00000000..231eb98b --- /dev/null +++ b/debian/libvibrant6-dev.install @@ -0,0 +1,87 @@ +usr/include/ncbi/aacomp.h +usr/include/ncbi/algorend.h +usr/include/ncbi/apparam.h +usr/include/ncbi/biosrc.h +usr/include/ncbi/bspview.h +usr/include/ncbi/cdrgn.h +usr/include/ncbi/cn3d*.h +usr/include/ncbi/ddvclick.h +usr/include/ncbi/ddvcreate.h +usr/include/ncbi/ddvgraph.h +usr/include/ncbi/ddvmain.h +usr/include/ncbi/ddvopen.h +usr/include/ncbi/ddvpanel.h +usr/include/ncbi/diagnost.h +usr/include/ncbi/dlogutil.h +usr/include/ncbi/document.h +usr/include/ncbi/dotmatrx.h +usr/include/ncbi/dotviewer.h +usr/include/ncbi/drawingp.h +usr/include/ncbi/drawseq.h +usr/include/ncbi/entrez*.h +usr/include/ncbi/fea2seg.h +usr/include/ncbi/fstyle*.h +usr/include/ncbi/glbpic.h +usr/include/ncbi/gphdraw.h +usr/include/ncbi/gtrdraw.h +usr/include/ncbi/gxydraw.h +usr/include/ncbi/image*.h +usr/include/ncbi/import.h +usr/include/ncbi/ingen*.h +usr/include/ncbi/layout.h +usr/include/ncbi/legend.h +usr/include/ncbi/macrodlg.h +usr/include/ncbi/mapgene.h +usr/include/ncbi/mappingp.h +usr/include/ncbi/medview.h +usr/include/ncbi/motif.h +usr/include/ncbi/ncbidraw.h +usr/include/ncbi/ncbigif.h +usr/include/ncbi/ncbiport.h +usr/include/ncbi/netscape.h +usr/include/ncbi/odlbox.h +usr/include/ncbi/panels.h +usr/include/ncbi/pictur*.h +usr/include/ncbi/ppict3d.h +usr/include/ncbi/prtgene.h +usr/include/ncbi/pubdesc.h +usr/include/ncbi/saldist.h +usr/include/ncbi/saled.h +usr/include/ncbi/saledit.h +usr/include/ncbi/salfiles.h +usr/include/ncbi/salogif.h +usr/include/ncbi/salpanel.h +usr/include/ncbi/salparam.h +usr/include/ncbi/sdisplay.h +usr/include/ncbi/seqanal.h +usr/include/ncbi/seqcons.h +usr/include/ncbi/seqfltr.h +usr/include/ncbi/seqgraph.h +usr/include/ncbi/seqgrphx.h +usr/include/ncbi/seqmtrx.h +usr/include/ncbi/seqpanel.h +usr/include/ncbi/seqpcc.h +usr/include/ncbi/seqscrl.h +usr/include/ncbi/seqsub.h +usr/include/ncbi/shim3d.h +usr/include/ncbi/treevi*.h +usr/include/ncbi/udvdef.h +usr/include/ncbi/udviewer.h +usr/include/ncbi/udvseq.h +usr/include/ncbi/urkgraph.h +usr/include/ncbi/valdlg.h +usr/include/ncbi/vib*.h +usr/include/ncbi/viewer*.h +usr/include/ncbi/vsm*.h +usr/lib/*/libddvlib.a +usr/lib/*/libddvlib.so +usr/lib/*/libncbicn3d*.a +usr/lib/*/libncbicn3d*.so +usr/lib/*/libncbidesk.a +usr/lib/*/libncbidesk.so +usr/lib/*/libvibgif.a +usr/lib/*/libvibgif.so +usr/lib/*/libvibnet.a +usr/lib/*/libvibnet.so +usr/lib/*/libvibrant*.a +usr/lib/*/libvibrant*.so diff --git a/debian/libvibrant6-dev.postinst b/debian/libvibrant6-dev.postinst new file mode 100644 index 00000000..82adcf5f --- /dev/null +++ b/debian/libvibrant6-dev.postinst @@ -0,0 +1,13 @@ +#!/bin/sh +set -e + +# Formerly used to support libvibrant6-gl-dev's shenanigans. (Don't ask.) +olddir=/usr/lib/libvibrant-nogl + +if [ "$1" = configure ] && [ -d $olddir ]; then + echo "Cleaning up obsolete directory $olddir ..." + rm -f $olddir/libncbicn3d.so.6 $olddir/libvibrant.so.6 + rmdir --ignore-fail-on-non-empty $olddir +fi + +#DEBHELPER# diff --git a/debian/libvibrant6b.install b/debian/libvibrant6b.install new file mode 100644 index 00000000..4c3c16ff --- /dev/null +++ b/debian/libvibrant6b.install @@ -0,0 +1,5 @@ +usr/lib/*/libddvlib.so.* +usr/lib/*/libncbicn3d*.so.* +usr/lib/*/libncbidesk.so.* +usr/lib/*/libvibnet.so.* +usr/lib/*/libvibrant*.so.* diff --git a/debian/libvibrant6b.lintian-overrides b/debian/libvibrant6b.lintian-overrides new file mode 100644 index 00000000..5604f7ac --- /dev/null +++ b/debian/libvibrant6b.lintian-overrides @@ -0,0 +1 @@ +libvibrant6b: package-name-doesnt-match-sonames diff --git a/debian/libvibrant6b.symbols b/debian/libvibrant6b.symbols new file mode 100644 index 00000000..1f48382f --- /dev/null +++ b/debian/libvibrant6b.symbols @@ -0,0 +1,2469 @@ +libddvlib.so.6 libvibrant6b #MINVER# + DDVResetProc@Base 6.1.20060507 + DDV_AdjustDrawingRect@Base 6.1.20060507 + DDV_Blast2Seqs@Base 6.1.20060507 + DDV_Cancel@Base 6.1.20060507 + DDV_CleanupDDVPdata_g@Base 6.1.20060507 + DDV_ClickProc@Base 6.1.20060507 + DDV_ClickProcLower@Base 6.1.20060507 + DDV_ClickProcUpper@Base 6.1.20060507 + DDV_CloseData@Base 6.1.20060507 + DDV_ComputeColWidth@Base 6.1.20060507 + DDV_ComputeRuler@Base 6.1.20060507 + DDV_CreateDataForEditor@Base 6.1.20060507 + DDV_CreateViewerPanel@Base 6.1.20060507 + DDV_DispPositionInStatus@Base 6.1.20060507 + DDV_DoAlign@Base 6.1.20060507 + DDV_DragProc@Base 6.1.20060507 + DDV_DrawPanelContent@Base 6.1.20060507 + DDV_DrawPanelContent_H@Base 6.1.20060507 + DDV_DrawViewer@Base 6.1.20060507 + DDV_EnableGotoTBItems@Base 6.1.20060507 + DDV_FileCloseIt@Base 6.1.20060507 + DDV_GetAndCheckSeqAlign@Base 6.1.20060507 + DDV_GetCharBufferForEditor@Base 6.1.20060507 + DDV_GetColNumberGivenMousePos@Base 6.1.20060507 + DDV_GetCurrentDispRange@Base 6.1.20060507 + DDV_GetHPixelPosGivenColNumber@Base 6.1.20060507 + DDV_GetHPixelPosGivenColNumberAndScroll@Base 6.1.20060507 + DDV_GetMtdpListForEditor@Base 6.1.20060507 + DDV_GetRulerForEditor@Base 6.1.20060507 + DDV_GetSelectedRegions@Base 6.1.20060507 + DDV_GetSeqNameGivenRow@Base 6.1.20060507 + DDV_GetVPixelPosGivenRowNumber@Base 6.1.20060507 + DDV_GetVPixelPosGivenRowNumberAndScroll@Base 6.1.20060507 + DDV_GetVPixelPosOfEmptySpace@Base 6.1.20060507 + DDV_GreyOut@Base 6.1.20060507 + DDV_HScrlProc@Base 6.1.20060507 + DDV_HideDlg@Base 6.1.20060507 + DDV_HideDlgItem@Base 6.1.20060507 + DDV_HoldProc@Base 6.1.20060507 + DDV_ImportBioseq@Base 6.1.20060507 + DDV_ImportBioseqDlg@Base 6.1.20060507 + DDV_ImportCB@Base 6.1.20060507 + DDV_ImportNucSeqAlign@Base 6.1.20060507 + DDV_ImportProtSeqAlign@Base 6.1.20060507 + DDV_InitGraphGlobal@Base 6.1.20060507 + DDV_InitPanelData@Base 6.1.20060507 + DDV_InvalRegion@Base 6.1.20060507 + DDV_IsLetterSelected@Base 6.1.20060507 + DDV_KeyboardProc@Base 6.1.20060507 + DDV_NoSave@Base 6.1.20060507 + DDV_ObjRegMasterEditDDV@Base 6.1.20060507 + DDV_ObjRegMasterViewDDV@Base 6.1.20060507 + DDV_ObjRegSlaveEditDDV@Base 6.1.20060507 + DDV_ObjRegSlaveViewDDV@Base 6.1.20060507 + DDV_OpenFile@Base 6.1.20060507 + DDV_OpenNetwork@Base 6.1.20060507 + DDV_ReDraw@Base 6.1.20060507 + DDV_ReDrawAtCol@Base 6.1.20060507 + DDV_ReleaseProc@Base 6.1.20060507 + DDV_Resize_DDV@Base 6.1.20060507 + DDV_Save@Base 6.1.20060507 + DDV_SaveEdits@Base 6.1.20060507 + DDV_SetMenuFocus@Base 6.1.20060507 + DDV_SetRulerAttribInPGP@Base 6.1.20060507 + DDV_SetupMenus@Base 6.1.20060507 + DDV_SetupWin@Base 6.1.20060507 + DDV_ShredAln@Base 6.1.20060507 + DDV_SlaveQuit@Base 6.1.20060507 + DDV_SortPGPLineNum@Base 6.1.20060507 + DDV_StartMainWin_Slave@Base 6.1.20060507 + DDV_TimerProc@Base 6.1.20060507 + DDV_UpdateHScrollVal@Base 6.1.20060507 + DDV_UpdateVScrollVal@Base 6.1.20060507 + DDV_VHScrl@Base 6.1.20060507 + DDV_VScrlProc@Base 6.1.20060507 + DDV_WhatSize@Base 6.1.20060507 + DDV_WinMainCleanup@Base 6.1.20060507 + DDV_WinMainProgQuit@Base 6.1.20060507 + DDV_WinMainResize@Base 6.1.20060507 + ddvPageData@Base 6.1.20060507 + szAppName2@Base 6.1.20060507 + szAppName@Base 6.1.20060507 +libncbicn3dOGL.so.6 libvibrant6b #MINVER# + AlgorithmicRendering@Base 6.1.20060507 + AssignDomainAlignedStatus@Base 6.1.20060507 + AssignDomainAlignedStatusForStrucSeqs@Base 6.1.20060507 + CSC_CalculateColumnColors@Base 6.1.20060507 + CSC_GetAlgorithmName@Base 6.1.20060507 + CSC_GetColumnColorByRow@Base 6.1.20060507 + CSC_SetAllDDVRowCells@Base 6.1.20060507 + CSC_SetDDVRowCells@Base 6.1.20060507 + CSC_SetNonStructureDDVRowCells@Base 6.1.20060507 + ClearDomainData@Base 6.1.20060507 + ClearRest@Base 6.1.20060507 + ClearSequences@Base 6.1.20060507 + Cn3DAddUserDefinedFeatureToBiostruc@Base 6.1.20060507 + Cn3DCheckAndDoHighlight@Base 6.1.20060507 + Cn3DCheckHighlighted@Base 6.1.20060507 + Cn3DCheckNoSingleHighlight@Base 6.1.20060507 + Cn3DFetchSeqEntry@Base 6.1.20060507 + Cn3DIndexUserDefinedFeature@Base 6.1.20060507 + Cn3DMime@Base 6.1.20060507 + Cn3DRemoveUserDefinedFeatureFromBiostruc@Base 6.1.20060507 + Cn3DResizeProc@Base 6.1.20060507 + Cn3DWin@Base 6.1.20060507 + Cn3DWin_Entrez@Base 6.1.20060507 + Cn3D_Accession2Gi@Base 6.1.20060507 + Cn3D_AddFeatureSet@Base 6.1.20060507 + Cn3D_Animate@Base 6.1.20060507 + Cn3D_AnnotEditFunc@Base 6.1.20060507 + Cn3D_Asn2Matrix@Base 6.1.20060507 + Cn3D_CheckNetworkUse@Base 6.1.20060507 + Cn3D_ColCPK@Base 6.1.20060507 + Cn3D_ColCyChain@Base 6.1.20060507 + Cn3D_ColDomain@Base 6.1.20060507 + Cn3D_ColHydro@Base 6.1.20060507 + Cn3D_ColObject@Base 6.1.20060507 + Cn3D_ColRes@Base 6.1.20060507 + Cn3D_ColSecStruc@Base 6.1.20060507 + Cn3D_ColSeqCons@Base 6.1.20060507 + Cn3D_ColStrucAlign@Base 6.1.20060507 + Cn3D_ColTemp@Base 6.1.20060507 + Cn3D_ColorData@Base 6.1.20060507 + Cn3D_ColorFuncFind@Base 6.1.20060507 + Cn3D_ColorFuncName@Base 6.1.20060507 + Cn3D_ColorList@Base 6.1.20060507 + Cn3D_ColorSpecial@Base 6.1.20060507 + Cn3D_Color_BYCHAIN@Base 6.1.20060507 + Cn3D_Color_BYDOMAIN@Base 6.1.20060507 + Cn3D_Color_BYHYDRO@Base 6.1.20060507 + Cn3D_Color_BYOBJECT@Base 6.1.20060507 + Cn3D_Color_BYRES@Base 6.1.20060507 + Cn3D_Color_BYSECSTRUC@Base 6.1.20060507 + Cn3D_Color_BYSEQCONS@Base 6.1.20060507 + Cn3D_Color_BYSTRUCCONS@Base 6.1.20060507 + Cn3D_Color_BYTEMP@Base 6.1.20060507 + Cn3D_Color_CPK@Base 6.1.20060507 + Cn3D_ConstructColorData@Base 6.1.20060507 + Cn3D_CountDomainProc@Base 6.1.20060507 + Cn3D_CountRows@Base 6.1.20060507 + Cn3D_DestructColorData@Base 6.1.20060507 + Cn3D_DisableFileOps@Base 6.1.20060507 + Cn3D_DisableMenus@Base 6.1.20060507 + Cn3D_DisplayProc@Base 6.1.20060507 + Cn3D_EnableFileOps@Base 6.1.20060507 + Cn3D_EnableMenus@Base 6.1.20060507 + Cn3D_EntrezOn@Base 6.1.20060507 + Cn3D_ExportSub@Base 6.1.20060507 + Cn3D_FindFeature@Base 6.1.20060507 + Cn3D_GetCurrentOGLData@Base 6.1.20060507 + Cn3D_GetRenderSettingsFromBiostruc@Base 6.1.20060507 + Cn3D_HideCtrl@Base 6.1.20060507 + Cn3D_ImportBioseq@Base 6.1.20060507 + Cn3D_ImportBioseqFile@Base 6.1.20060507 + Cn3D_ImportBioseqFileGap@Base 6.1.20060507 + Cn3D_ImportBioseqGap@Base 6.1.20060507 + Cn3D_IsVisible@Base 6.1.20060507 + Cn3D_LaunchSeqAnnot@Base 6.1.20060507 + Cn3D_LaunchSeqEntry@Base 6.1.20060507 + Cn3D_ListDomainProc@Base 6.1.20060507 + Cn3D_Matrix2Asn@Base 6.1.20060507 + Cn3D_ModelSelect@Base 6.1.20060507 + Cn3D_NetOpenBiostruc@Base 6.1.20060507 + Cn3D_OpenBiostruc@Base 6.1.20060507 + Cn3D_OpenEnd@Base 6.1.20060507 + Cn3D_OpenMesh@Base 6.1.20060507 + Cn3D_OpenStart@Base 6.1.20060507 + Cn3D_Redraw@Base 6.1.20060507 + Cn3D_RedrawEx@Base 6.1.20060507 + Cn3D_RedrawNUpdate@Base 6.1.20060507 + Cn3D_RedrawProc@Base 6.1.20060507 + Cn3D_RegisterColor@Base 6.1.20060507 + Cn3D_RegisterSeqAnnot@Base 6.1.20060507 + Cn3D_RegisterSeqEntry@Base 6.1.20060507 + Cn3D_RenAlign@Base 6.1.20060507 + Cn3D_RenBS@Base 6.1.20060507 + Cn3D_RenDefault@Base 6.1.20060507 + Cn3D_RenHier@Base 6.1.20060507 + Cn3D_RenSpace@Base 6.1.20060507 + Cn3D_RenStruc@Base 6.1.20060507 + Cn3D_RenTube@Base 6.1.20060507 + Cn3D_RenWire@Base 6.1.20060507 + Cn3D_ResetActiveStrucProc@Base 6.1.20060507 + Cn3D_SaveActiveCam@Base 6.1.20060507 + Cn3D_SaveBiostruc@Base 6.1.20060507 + Cn3D_SaveSub@Base 6.1.20060507 + Cn3D_SendUpdate@Base 6.1.20060507 + Cn3D_SetPars@Base 6.1.20060507 + Cn3D_SetQualityFromAppParams@Base 6.1.20060507 + Cn3D_SetQueryCallback@Base 6.1.20060507 + Cn3D_SetStrucList@Base 6.1.20060507 + Cn3D_SetVisible@Base 6.1.20060507 + Cn3D_Size@Base 6.1.20060507 + Cn3D_StartNet@Base 6.1.20060507 + Cn3D_UsingEntrez@Base 6.1.20060507 + Cn3D_fAlignOn@Base 6.1.20060507 + Cn3D_fUnalignOn@Base 6.1.20060507 + Cn3dObjMgrGetSelected@Base 6.1.20060507 + Cn3d_ColorNames@Base 6.1.20060507 + Cn3d_PaletteRGB@Base 6.1.20060507 + CopyRenderKeep@Base 6.1.20060507 + DecrementFeatureID@Base 6.1.20060507 + DisplayControls@Base 6.1.20060507 + DoCHighlightSeg@Base 6.1.20060507 + DoMediaHL@Base 6.1.20060507 + FindMM@Base 6.1.20060507 + FreeAlgorRenderSet@Base 6.1.20060507 + FreeRenderKeep@Base 6.1.20060507 + GetGraphNCBI4na@Base 6.1.20060507 + GetGraphNCBIstdaa@Base 6.1.20060507 + GetSpecialAlgorRenderSet@Base 6.1.20060507 + LabelControls@Base 6.1.20060507 + LaunchSequenceWindow@Base 6.1.20060507 + MMDB_OpenTraverse@Base 6.1.20060507 + MMDB_ReadMime@Base 6.1.20060507 + MakeStrucPalette@Base 6.1.20060507 + MediaHL@Base 6.1.20060507 + MediaObjSelect@Base 6.1.20060507 + Mesh@Base 6.1.20060507 + MeshLoaded@Base 6.1.20060507 + Mime_ReadIn@Base 6.1.20060507 + ModelControls@Base 6.1.20060507 + NewAlignRenderSet@Base 6.1.20060507 + NewRenderKeep@Base 6.1.20060507 + NewStructureRenderSet@Base 6.1.20060507 + Nlm_Call_SaveImageGIF@Base 6.1.20060507 + Nlm_Call_SetPosition3D@Base 6.1.20060507 + OGL_Quality@Base 6.1.20060507 + OpenMimeFileWithDeletion@Base 6.1.20060507 + PickedModels@Base 6.1.20060507 + RemovePARSFromMGD@Base 6.1.20060507 + RenderAnAtom@Base 6.1.20060507 + RenderControls@Base 6.1.20060507 + RenderObject@Base 6.1.20060507 + ResetDisplayCtrls@Base 6.1.20060507 + ResetLabelCtrls@Base 6.1.20060507 + ResetRenderCtrls@Base 6.1.20060507 + SeqStrucMediaFunc@Base 6.1.20060507 + SetAlignAlgorRender@Base 6.1.20060507 + SetStructureAlgorRender@Base 6.1.20060507 + allowAltConfIdOverlay@Base 6.1.20060507 + fnARLoop@Base 6.1.20060507 + fnAlignList@Base 6.1.20060507 + fnCHLresidue@Base 6.1.20060507 + fnClearMarkedResidues@Base 6.1.20060507 + fnCn3D_RedrawWrapper@Base 6.1.20060507 + fnMSPLoop@Base 6.1.20060507 + fnMarkAlignedResidues@Base 6.1.20060507 + fnPreCHLresidue@Base 6.1.20060507 + fnSetGlobalPARSinMG@Base 6.1.20060507 + iCountItemGet@Base 6.1.20060507 + readErrors@Base 6.1.20060507 +libncbidesk.so.6 libvibrant6b #MINVER# + AAComposition@Base 6.1.20060507 + ActOnFeatureReplaceList@Base 6.1.20081116 + AddAppearanceItemToAppearance@Base 6.1.20060507 + AddBioseqPageToList@Base 6.1.20060507 + AddFeatureToFilterItem@Base 6.1.20060507 + AddFeaturesToList@Base 6.1.20081116 + AddFeaturesToReplaceList@Base 6.1.20081116 + AddGraphSentinelToPicture@Base 6.1.20060507 + AddIntervalForImage@Base 6.1.20060507 + AddScrollControl@Base 6.1.20060507 + AddStringToValNodeChain@Base 6.1.20060507 + AddToComment@Base 6.1.20080302 + AdjustFromForGap@Base 6.1.20060507 + AdjustToForGap@Base 6.1.20060507 + AlgEditFunc@Base 6.1.20060507 + AlgViewFunc@Base 6.1.20060507 + AlignReportItem@Base 6.1.20060507 + AlnSettingsDlg@Base 6.1.20120620 + AlreadyHasRNA@Base 6.1.20080302 + AnnotAlgEditFunc@Base 6.1.20060507 + AppendReplaceMessage@Base 6.1.20060507 + ApplyFeatureDetailsDialog@Base 6.1.20100808 + ApplyFeatureDetailsFree@Base 6.1.20100808 + ApplyFeatureDetailsNew@Base 6.1.20100808 + ApplyFeatureToAlignment@Base 6.1.20060507 + ApplyProductToRNA@Base 6.1.20080302 + ApplyRnaTypeToSeqFeat@Base 6.1.20080302 + AsnReadForSalsa@Base 6.1.20060507 + AuthorSpreadsheetStringToNameStdPtr@Base 6.1.20060507 + AutofixOnStartup@Base 6.1.20110713 + AutomatchFeatures@Base 6.1.20081116 + BatchApplyFeatureDetailsDialog@Base 6.1.20060507 + BatchApplyFeatureDetailsFree@Base 6.1.20060507 + BatchApplyFeatureDetailsNew@Base 6.1.20060507 + BioSourceDialog@Base 6.1.20060507 + BioSourceDialogToGenBankDivision@Base 6.1.20060507 + BioSourceGenFunc@Base 6.1.20060507 + BioseqPageListFree@Base 6.1.20060507 + BioseqPtrToGraphViewForm@Base 6.1.20060507 + BioseqPtrToSeqAnalForm@Base 6.1.20060507 + BioseqViewCanSaveFasta@Base 6.1.20060507 + BioseqViewMsgFunc@Base 6.1.20060507 + ButRegAdd@Base 6.1.20060507 + ButRegFree@Base 6.1.20060507 + ButRegNew@Base 6.1.20060507 + ButRegSelectProc@Base 6.1.20060507 + CCFetchFromNet@Base 6.1.20060507 + CCReadAnythingLoop@Base 6.1.20060507 + CalculateAlignmentOffsets@Base 6.1.20061015 + CapChangeDialog@Base 6.1.20100808 + CapChangeDialogEx@Base 6.1.20120620 + CdRgnFeatFormActnProc@Base 6.1.20060507 + CdRgnGenFunc@Base 6.1.20060507 + CdRgnToProtProc@Base 6.1.20060507 + CdRgnTranslateWithFrame@Base 6.1.20060507 + ChangeComplexConstraintFieldType@Base 6.1.20100808 + ChangeDataForTabColumnConfigListDialog@Base 6.1.20090301 + CheckAlignmentSequenceLengths@Base 6.1.20061015 + CitSubFromContactInfo@Base 6.1.20060507 + CleanupEvidenceGBQuals@Base 6.1.20060507 + ClearTextBtn@Base 6.1.20160908 + ClearUDV_mouse_select@Base 6.1.20060507 + ClearValidateWindow@Base 6.1.20060507 + CloseAlignmentEditor@Base 6.1.20110713 + CloseLog@Base 6.1.20090719 + CloseMacroEditorWindowProc@Base 6.1.20120620 + CollectFeatures@Base 6.1.20060507 + CollectionDateDialog@Base 6.1.20070822 + ColorIdentityDialog@Base 6.1.20060507 + ColorIdentityDialogItem@Base 6.1.20060507 + ComMatFree@Base 6.1.20060507 + CommentRuleDialog@Base 6.1.20090719 + CommentSetDialog@Base 6.1.20090719 + CompareFeatureValNodeStrings@Base 6.1.20060507 + CompareImpFeatEnumFieldAssoc@Base 6.1.20060507 + CompileMatrix@Base 6.1.20060507 + ComplexConstraintDialog@Base 6.1.20081116 + ConstraintSetDialog@Base 6.1.20100808 + ConvertPairwiseToMultipleAlignment@Base 6.1.20060507 + ConvertProductQualToRnaRefName@Base 6.1.20080302 + CopyMedlineViewFormToClipboard@Base 6.1.20060507 + CopyTableDisplayRowList@Base 6.1.20060507 + CorrectAlignmentIDs@Base 6.1.20120620 + CountIvals@Base 6.1.20060507 + CountMaxSeqLabel@Base 6.1.20060507 + CreateAffilDialog@Base 6.1.20060507 + CreateAlnEditorWindow@Base 6.1.20060507 + CreateAlnEditorWindowEx@Base 6.1.20100808 + CreateAppearance@Base 6.1.20060507 + CreateAuthorDialog@Base 6.1.20060507 + CreateAuthorDialogEx@Base 6.1.20160908 + CreateBioSourceDescForm@Base 6.1.20060507 + CreateBioSourceFeatForm@Base 6.1.20060507 + CreateBondEditorDialog@Base 6.1.20060507 + CreateCdRgnForm@Base 6.1.20060507 + CreateCitSubDialog@Base 6.1.20060507 + CreateClickableListDialog@Base 6.1.20070822 + CreateClickableListDialogEx@Base 6.1.20070822 + CreateClickableListDialogExEx@Base 6.1.20081116 + CreateClickableListDialogExExEx@Base 6.1.20120620 + CreateCommonFeatureGroup@Base 6.1.20060507 + CreateCommonFeatureGroupEx@Base 6.1.20060507 + CreateContactDialog@Base 6.1.20060507 + CreateDatabaseAlist@Base 6.1.20060507 + CreateDateDialog@Base 6.1.20060507 + CreateDateDialogEx@Base 6.1.20081116 + CreateDateForm@Base 6.1.20060507 + CreateDbtagDialog@Base 6.1.20060507 + CreateDocsumForm@Base 6.1.20060507 + CreateDotMatrixForm@Base 6.1.20060507 + CreateDotMatrixFormEx@Base 6.1.20060507 + CreateEnumForm@Base 6.1.20060507 + CreateExperimentDialog@Base 6.1.20160908 + CreateExtAffilDialog@Base 6.1.20060507 + CreateExtProceedingsDialog@Base 6.1.20060507 + CreateExtPublisherAffilDialog@Base 6.1.20060507 + CreateFieldAlist@Base 6.1.20060507 + CreateFilter@Base 6.1.20060507 + CreateGenBankForm@Base 6.1.20060507 + CreateGeneForm@Base 6.1.20060507 + CreateGlobalDrawData@Base 6.1.20060507 + CreateGraphViewForm@Base 6.1.20060507 + CreateGraphicView@Base 6.1.20060507 + CreateGraphicViewFromBsp@Base 6.1.20060507 + CreateGraphicViewInternal@Base 6.1.20060507 + CreateImportFields@Base 6.1.20060507 + CreateImportForm@Base 6.1.20060507 + CreateInferenceEditDialog@Base 6.1.20070822 + CreateIntervalEditorDialog@Base 6.1.20060507 + CreateIntervalEditorDialogEx@Base 6.1.20060507 + CreateIntervalEditorDialogExEx@Base 6.1.20060507 + CreateLegendItem@Base 6.1.20060507 + CreateMainControls@Base 6.1.20060507 + CreateMedlineViewForm@Base 6.1.20060507 + CreateMolInfoDialog@Base 6.1.20060507 + CreateMolInfoForm@Base 6.1.20060507 + CreateNewFilterItemInFilter@Base 6.1.20060507 + CreateNewLayoutMenu@Base 6.1.20060507 + CreateNewSeqEntryViewForm@Base 6.1.20060507 + CreateOrgModDialog@Base 6.1.20070822 + CreateProceedingsDialog@Base 6.1.20060507 + CreateProtForm@Base 6.1.20060507 + CreatePubdescDescForm@Base 6.1.20060507 + CreatePubdescFeatForm@Base 6.1.20060507 + CreatePubdescInitForm@Base 6.1.20060507 + CreatePublisherAffilDialog@Base 6.1.20060507 + CreateQualsDialog@Base 6.1.20060507 + CreateRegionOrCommentForm@Base 6.1.20060507 + CreateReplaceWindow@Base 6.1.20060507 + CreateRnaForm@Base 6.1.20060507 + CreateRptUnitRangeDialog@Base 6.1.20070822 + CreateSearchWindow@Base 6.1.20060507 + CreateSeqAlignLabel@Base 6.1.20070822 + CreateSeqAnalForm@Base 6.1.20060507 + CreateSeqEditorWindow@Base 6.1.20060507 + CreateSeqViewPanel@Base 6.1.20060507 + CreateSimpleBioSourceDialog@Base 6.1.20060507 + CreateStandardEditMenu@Base 6.1.20070822 + CreateStdEditorFormMenus@Base 6.1.20060507 + CreateStdValidatorFormMenus@Base 6.1.20060507 + CreateSubSourceDialog@Base 6.1.20070822 + CreateSubmitBlockForm@Base 6.1.20060507 + CreateSubmitDataDialog@Base 6.1.20060507 + CreateSubmitTemplateEditorForm@Base 6.1.20060507 + CreateTermlistForm@Base 6.1.20060507 + CreateValidateWindow@Base 6.1.20060507 + CreateValidateWindowEx@Base 6.1.20060507 + CreateValidateWindowExEx@Base 6.1.20090719 + CreateValidateWindowExExEx@Base 6.1.20090719 + CreateVisStrForm@Base 6.1.20060507 + CreateVisibleStringDialog@Base 6.1.20060507 + CreatencRNAClassDialog@Base 6.1.20080302 + DBGetIDFromName@Base 6.1.20060507 + DBGetNameFromID@Base 6.1.20060507 + DOT_AlignInfoNew@Base 6.1.20060507 + DOT_AlignPlotGivenScp@Base 6.1.20060507 + DOT_AlignPlotGivenSeqAlign@Base 6.1.20060507 + DOT_CancelParams@Base 6.1.20060507 + DOT_Compression@Base 6.1.20060507 + DOT_DoParams@Base 6.1.20060507 + DOT_DoZoom@Base 6.1.20060507 + DOT_DrawScale@Base 6.1.20060507 + DOT_DrawXGrids@Base 6.1.20060507 + DOT_FillAlignInfoPointer@Base 6.1.20060507 + DOT_GetValue@Base 6.1.20060507 + DOT_MakeMainViewer@Base 6.1.20060507 + DOT_Prob_FillAlignInfoPointer@Base 6.1.20060507 + DOT_QuitProg@Base 6.1.20060507 + DOT_RegDiagsDisplay@Base 6.1.20060507 + DOT_SVFindHit@Base 6.1.20060507 + DOT_SetupBlastWindow@Base 6.1.20060507 + DOT_SetupMenus@Base 6.1.20060507 + DOT_SetupParamsWindow@Base 6.1.20060507 + DOT_SetupZoomWindow@Base 6.1.20060507 + DOT_StartDOTPLOT@Base 6.1.20060507 + DOT_UpdateLRBT@Base 6.1.20060507 + DateGenFunc@Base 6.1.20060507 + DatePtrToVibrant@Base 6.1.20060507 + DefinePanelDialog@Base 6.1.20060507 + DescFormReplaceWithoutUpdateProc@Base 6.1.20060507 + DescFormReplaceWithoutUpdateProcEx@Base 6.1.20100808 + DescriptorPropagate@Base 6.1.20060507 + DescriptorStreamEditor@Base 6.1.20100808 + DestroyAppearance@Base 6.1.20060507 + DestroyFilter@Base 6.1.20060507 + DisableStrainForwarding@Base 6.1.20160908 + DisplayEntrezReply@Base 6.1.20060507 + DisplayEntrezRequest@Base 6.1.20060507 + DisplayErrorMessages@Base 6.1.20060507 + DistPosItem@Base 6.1.20060507 + DoFixCDS@Base 6.1.20060507 + DotMatrixAlignmentNew@Base 6.1.20060507 + DotMatrixGenFunc@Base 6.1.20060507 + DotMatrixSearch@Base 6.1.20060507 + DotPlotDialog@Base 6.1.20060507 + DotPlotItem@Base 6.1.20060507 + DotXYPlot@Base 6.1.20060507 + DrawAlignNode@Base 6.1.20060507 + DrawCompressAlignment@Base 6.1.20060507 + DrawCytoContigMap@Base 6.1.20060507 + DrawCytoMap@Base 6.1.20060507 + DrawFeatNode@Base 6.1.20060507 + DrawFeatures@Base 6.1.20060507 + DrawFlatAlign@Base 6.1.20060507 + DrawFlatNode@Base 6.1.20060507 + DrawGeneticMap@Base 6.1.20060507 + DrawGenomeMap@Base 6.1.20060507 + DrawGenomeMapEx@Base 6.1.20060507 + DrawGraphToPanel@Base 6.1.20060507 + DrawHistory@Base 6.1.20060507 + DrawMPAlignment@Base 6.1.20060507 + DrawPhysicalMap@Base 6.1.20060507 + DrawRestrictionMap@Base 6.1.20060507 + DrawSeqGraphSegment@Base 6.1.20060507 + DrawSeqHistoryAlignment@Base 6.1.20060507 + DrawSeqMap@Base 6.1.20060507 + DrawSeqScale@Base 6.1.20060507 + DrawSequinMap@Base 6.1.20060507 + DrawSequinMapEx@Base 6.1.20060507 + DrawTree@Base 6.1.20060507 + DrawVerticalAlign@Base 6.1.20060507 + Draw_Global@Base 6.1.20060507 + EditAlignDataRepopulateFromSeqAlign@Base 6.1.20060507 + EditApplyDialog@Base 6.1.20070822 + EditApplyFree@Base 6.1.20070822 + EditApplyNew@Base 6.1.20080302 + EditBioseqToFasta@Base 6.1.20060507 + EditCitDescDirectly@Base 6.1.20090719 + EditCitFeatDirectly@Base 6.1.20090719 + EditMacroTemplate@Base 6.1.20110713 + EditPubdescInPlace@Base 6.1.20100808 + EditPublicationInDialog@Base 6.1.20060507 + EditableTableDisplayDialog@Base 6.1.20120620 + EnableDisableLegendItem@Base 6.1.20060507 + EndDistanceDialog@Base 6.1.20100808 + EntityAlreadyHasViewer@Base 6.1.20061015 + EnumAssocSelectionDialog@Base 6.1.20060507 + EnumGenFunc@Base 6.1.20060507 + ExperimentDialogToGbquals@Base 6.1.20160908 + ExportBioseqViewFasta@Base 6.1.20060507 + ExportMedlineViewFormToFile@Base 6.1.20060507 + ExportSeqAnnotFeatureTable@Base 6.1.20070822 + ExportTextFunc@Base 6.1.20060507 + FastaRead@Base 6.1.20060507 + FeatCitEditDialog@Base 6.1.20060507 + FeatFormReplaceWithoutUpdateProc@Base 6.1.20060507 + FeatureLocationAlignment@Base 6.1.20060507 + FeaturePropagateForm@Base 6.1.20060507 + FeatureReplaceListDialog@Base 6.1.20081116 + FeatureReplaceListFree@Base 6.1.20081116 + FeatureReplaceListFromSeqAnnot@Base 6.1.20081116 + FeatureSelectListDialog@Base 6.1.20081116 + FeatureTypeDialog@Base 6.1.20080302 + FeatureTypeDialogMulti@Base 6.1.20090719 + FigureMaxScale@Base 6.1.20060507 + FigureMinScale@Base 6.1.20060507 + FileInProc@Base 6.1.20060507 + FileToClipboard@Base 6.1.20060507 + FileToScrollText@Base 6.1.20060507 + FilterSeq@Base 6.1.20060507 + FindAppearanceByName@Base 6.1.20060507 + FindFilterByName@Base 6.1.20060507 + FindIdsInSalsaPanel@Base 6.1.20060507 + FindLayoutByName@Base 6.1.20060507 + FindPatternDialog@Base 6.1.20060507 + FixCapsSourceCountryDialog@Base 6.1.20110713 + FixSpecialCharacters@Base 6.1.20080302 + FixSpecialCharactersForObject@Base 6.1.20080302 + FixSpecialCharactersForStringsInList@Base 6.1.20080302 + FormulaDialog@Base 6.1.20060507 + FreeCollectedFeatures@Base 6.1.20060507 + FreeGeneticCodes@Base 6.1.20060507 + FreeOrganismTable@Base 6.1.20060507 + FreePrintOptions@Base 6.1.20060507 + FreeReplaceWindow@Base 6.1.20060507 + FreeSearchWindow@Base 6.1.20060507 + FreeSqnTempFiles@Base 6.1.20080302 + FreeTableDisplayRowList@Base 6.1.20060507 + FreeValidateWindow@Base 6.1.20060507 + GBQualsToExperimentDialog@Base 6.1.20160908 + GBQualsToInferenceDialog@Base 6.1.20060507 + GenBankGenFunc@Base 6.1.20060507 + GeneGenFunc@Base 6.1.20060507 + GenericMacroActionForm@Base 6.1.20120620 + GetAlignDataPanel@Base 6.1.20060507 + GetAlignEditData@Base 6.1.20060507 + GetAlignmentOptions@Base 6.1.20120620 + GetAlignmentsInSeqEntryCallback@Base 6.1.20070822 + GetAlnScoreCount@Base 6.1.20060507 + GetAlnScoreCutoffCount@Base 6.1.20060507 + GetAlnScoreCutoffList@Base 6.1.20060507 + GetAlnScoreNameList@Base 6.1.20060507 + GetAppearanceCount@Base 6.1.20060507 + GetBaseFormList@Base 6.1.20080302 + GetBioseqViewPtrFromBaseFormPtr@Base 6.1.20060507 + GetBioseqViewTarget@Base 6.1.20070822 + GetCapChangeDialogValue@Base 6.1.20110713 + GetExistingTextHandlerInfo@Base 6.1.20070822 + GetFeatureTypeFromFeatureTypeDialog@Base 6.1.20110713 + GetFilterCount@Base 6.1.20060507 + GetFilterNameList@Base 6.1.20060507 + GetGeneticCodeValNodeList@Base 6.1.20060507 + GetGraphicConfigParseResults@Base 6.1.20060507 + GetIdStringsForSeqEntryAligns@Base 6.1.20060507 + GetLayoutCount@Base 6.1.20060507 + GetLayoutNameList@Base 6.1.20060507 + GetLocListForBioSource@Base 6.1.20081116 + GetMatchLocationFromIdMatchLocationDlg@Base 6.1.20110713 + GetModifiersEnum@Base 6.1.20070822 + GetMoleculeClassName@Base 6.1.20070822 + GetMoleculeTopologyName@Base 6.1.20120620 + GetMoleculeTypeName@Base 6.1.20070822 + GetNextFeatureOnSegOrMaster@Base 6.1.20060507 + GetPanelFromWindow@Base 6.1.20060507 + GetProcIdForItemEditor@Base 6.1.20090719 + GetRidOfEmptyFeatsDescStrings@Base 6.1.20060507 + GetRowListCellText@Base 6.1.20060507 + GetSelectedClickableListText@Base 6.1.20070822 + GetSelectedDocText@Base 6.1.20080302 + GetSelectedNewFeature@Base 6.1.20081116 + GetSeqAnnotForAlignment@Base 6.1.20060507 + GetStyleNameList@Base 6.1.20060507 + GetSubSourceAndOrgModEnum@Base 6.1.20070822 + GetTableDisplayDefaultFont@Base 6.1.20060507 + GetTextSelectCharOffsetEx@Base 6.1.20080302 + GetUidsForOneSeqAnnot@Base 6.1.20060507 + GetUidsForSeqEntryAligns@Base 6.1.20060507 + GetViewedSeqEntryList@Base 6.1.20080302 + GlobalPictureUpdate@Base 6.1.20060507 + GoToButton@Base 6.1.20060507 + GpDistanceItem@Base 6.1.20060507 + GraphViewFormFree@Base 6.1.20060507 + GraphViewFormNew@Base 6.1.20060507 + GridMatch@Base 6.1.20060507 + GridMatchSetUp@Base 6.1.20060507 + GroupFeatNode@Base 6.1.20060507 + HandleExistingText@Base 6.1.20070822 + HideBioseqView@Base 6.1.20100808 + HideFeatureFunc@Base 6.1.20060507 + HideValidateDoc@Base 6.1.20060507 + HscrlProc@Base 6.1.20060507 + IdMatchLocationDlg@Base 6.1.20110713 + ImportFromFile@Base 6.1.20060507 + ImportGenFunc@Base 6.1.20060507 + InBioseqViewEntityList@Base 6.1.20060507 + InferenceDialogToGBQuals@Base 6.1.20060507 + InferenceEditFree@Base 6.1.20070822 + InferenceFieldEditFree@Base 6.1.20070822 + InferenceTextFromStruct@Base 6.1.20070822 + Ing_AddGCRect@Base 6.1.20060507 + Ing_AddRuler@Base 6.1.20060507 + Ing_AttachMessageProc@Base 6.1.20060507 + Ing_AttachSeqAnnotToSeqEntry@Base 6.1.20060507 + Ing_BigDecodeIdxFeat@Base 6.1.20060507 + Ing_BigEncodeIdxFeat@Base 6.1.20060507 + Ing_Blast2SeqsProc@Base 6.1.20060507 + Ing_BuildColorTable@Base 6.1.20060507 + Ing_CanSaveFasta@Base 6.1.20060507 + Ing_CreateBlast2SeqsForm@Base 6.1.20060507 + Ing_CreateDotMatrixForm@Base 6.1.20060507 + Ing_CreateSpideyForm@Base 6.1.20060507 + Ing_DeleteSpidey@Base 6.1.20060507 + Ing_DoesAlignmentCoverAll@Base 6.1.20060507 + Ing_DotDiagProc@Base 6.1.20060507 + Ing_ExploreSegments@Base 6.1.20060507 + Ing_ExportFasta@Base 6.1.20060507 + Ing_FileOpenFromCommandline@Base 6.1.20060507 + Ing_FileOpenProc@Base 6.1.20060507 + Ing_FillSeqBuffer@Base 6.1.20060507 + Ing_FindSpidpGivenParent@Base 6.1.20060507 + Ing_FreeColorTable@Base 6.1.20060507 + Ing_GetBspFromGIOrAcc@Base 6.1.20060507 + Ing_GetFileForDotMatrix@Base 6.1.20060507 + Ing_GetFileForSpidey@Base 6.1.20060507 + Ing_GetFromNetwork@Base 6.1.20060507 + Ing_GetScoreAndEvalue@Base 6.1.20060507 + Ing_GetValue@Base 6.1.20060507 + Ing_HighlightReportWindow@Base 6.1.20060507 + Ing_InitAlignArrays@Base 6.1.20060507 + Ing_InitGrData@Base 6.1.20060507 + Ing_InitfeatDefFilter@Base 6.1.20060507 + Ing_MainDataNew@Base 6.1.20060507 + Ing_MakeLocListFromSpidp@Base 6.1.20060507 + Ing_NetOpenFromCommandline@Base 6.1.20060507 + Ing_OpenFromFileORNetwork@Base 6.1.20060507 + Ing_OpenUDV@Base 6.1.20060507 + Ing_ParseSeqIdFile@Base 6.1.20060507 + Ing_PopDetailedPage@Base 6.1.20060507 + Ing_PopOverviewPage@Base 6.1.20060507 + Ing_PopOverviewRuler@Base 6.1.20060507 + Ing_PopulateDetailedPage@Base 6.1.20060507 + Ing_PopulateOverviewPage@Base 6.1.20060507 + Ing_PopulateReport@Base 6.1.20060507 + Ing_PopulateSequinGraphic@Base 6.1.20060507 + Ing_PrintText@Base 6.1.20060507 + Ing_ProgressEnd@Base 6.1.20060507 + Ing_ProgressNew@Base 6.1.20060507 + Ing_PutColor@Base 6.1.20060507 + Ing_QBlastProc@Base 6.1.20060507 + Ing_ReadmRNAs@Base 6.1.20060507 + Ing_RegIngenueProc@Base 6.1.20060507 + Ing_RegisterIngenueProc@Base 6.1.20060507 + Ing_ReplaceAllMismatchedInLocation@Base 6.1.20060507 + Ing_ReportWindow@Base 6.1.20060507 + Ing_SearchAli@Base 6.1.20060507 + Ing_SetupMenus@Base 6.1.20060507 + Ing_StringCat@Base 6.1.20060507 + Ing_WinTimerProc@Base 6.1.20060507 + Ing_mRNAOrExons@Base 6.1.20060507 + Ing_tRNAscanMenu@Base 6.1.20060507 + IngenueCheckSocketsProc@Base 6.1.20060507 + IngfeatDefFilter@Base 6.1.20060507 + IngfeatDefTrack2@Base 6.1.20060507 + IngfeatDefTrack@Base 6.1.20060507 + InitPseudogenePopup@Base 6.1.20120620 + InvertMatrix@Base 6.1.20060507 + IsADeltaBioseq@Base 6.1.20060507 + IsAGenomeRecord@Base 6.1.20060507 + IsANamedAlignment@Base 6.1.20060507 + IsNonTextModifier@Base 6.1.20070822 + IsSegmentedBioseqWithoutParts@Base 6.1.20060507 + IsTaxValidationRequested@Base 6.1.20100808 + IsVSeqMgrOpen@Base 6.1.20160908 + ItemAlreadyHasEditor@Base 6.1.20060507 + JK_NTPattern2@Base 6.1.20060507 + JK_NTPattern2Ex@Base 6.1.20060507 + JK_NTPattern@Base 6.1.20060507 + Label_GData@Base 6.1.20060507 + LaunchAlignEditor@Base 6.1.20060507 + LaunchAlignEditorFromDesktop2@Base 6.1.20060507 + LaunchAlignEditorFromDesktop@Base 6.1.20060507 + LaunchAlignViewer@Base 6.1.20060507 + LaunchAnnotAlignEditor@Base 6.1.20060507 + LaunchAsnTextViewer@Base 6.1.20060507 + LaunchCommentRulesEditor@Base 6.1.20090719 + LaunchEntrezURL@Base 6.1.20060507 + LaunchGeneralTextViewer@Base 6.1.20060507 + LaunchGeneralTextViewerWithRepopulate@Base 6.1.20060507 + LaunchMacroEditor@Base 6.1.20080302 + LaunchMacroEditorMenuItem@Base 6.1.20120620 + LaunchMacroTemplateEditor@Base 6.1.20110713 + LaunchNewBioseqViewer@Base 6.1.20060507 + LaunchRecViewer@Base 6.1.20060507 + LaunchSuspectProductRuleEditor@Base 6.1.20110713 + LaunchSuspectProductRuleEditorBaseForm@Base 6.1.20110713 + LaunchViewerNotEditor@Base 6.1.20060507 + LayoutAlignFlat@Base 6.1.20060507 + LayoutAlignNode@Base 6.1.20060507 + LayoutFeatNode@Base 6.1.20060507 + LayoutGlobalDrawData@Base 6.1.20060507 + LayoutNodeFlat@Base 6.1.20060507 + LoadContigAlign@Base 6.1.20060507 + LoadOrganismTable@Base 6.1.20060507 + LocationConstraintDialog@Base 6.1.20080302 + LogoFontCreate@Base 6.1.20060507 + LookAtButton@Base 6.1.20060507 + MUSK_COLOR@Base 6.1.20060507 + MacroApplyKeyword@Base 6.1.20090719 + MacroTemplateApplyTextDialog@Base 6.1.20110713 + MacroTemplateStringDialog@Base 6.1.20110713 + MakeCompressAlignList@Base 6.1.20060507 + MakeFeatProc@Base 6.1.20060507 + MakeIvals@Base 6.1.20060507 + MakeToolFormForBioseqView@Base 6.1.20060507 + MakeTxLink@Base 6.1.20060507 + MakeViewerIndependent@Base 6.1.20061015 + MapCytoBand@Base 6.1.20060507 + MatchTypeDialog@Base 6.1.20081116 + MatchesRnaType@Base 6.1.20080302 + MatrixSeq@Base 6.1.20060507 + MedlineViewGenFunc@Base 6.1.20060507 + ModTextFixNew@Base 6.1.20060507 + ModalAcceptButton@Base 6.1.20060507 + ModalCancelButton@Base 6.1.20060507 + ModalThirdOptionButton@Base 6.1.20060507 + MolInfoBlockDialog@Base 6.1.20081116 + MolInfoGenFunc@Base 6.1.20060507 + MolinfoFieldChoiceDialog@Base 6.1.20090719 + Msk_OrderWasModified@Base 6.1.20060507 + MuskGlobalPicture@Base 6.1.20060507 + NameStdPtrToAuthorSpreadsheetString@Base 6.1.20060507 + NameValuePairCopy@Base 6.1.20070822 + NameValuePairFree@Base 6.1.20070822 + NameValuePairListFree@Base 6.1.20070822 + NewCreateImportFields@Base 6.1.20070822 + NewSaveBioseqViewFormGifItemTable@Base 6.1.20060507 + NewSeqEntryViewGenFunc@Base 6.1.20060507 + NewlinesToTildes@Base 6.1.20080302 + Nlm_CopyMuskStyle@Base 6.1.20060507 + Nlm_CreateDlgCColor@Base 6.1.20060507 + Nlm_CreateDlgCommon@Base 6.1.20060507 + Nlm_CreateDlgExtra@Base 6.1.20060507 + Nlm_CreateDlgFeatures@Base 6.1.20060507 + Nlm_CreateDlgGroup@Base 6.1.20060507 + Nlm_CreateDlgSeq@Base 6.1.20060507 + Nlm_CtreateToolsSM@Base 6.1.20060507 + Nlm_DeleteMuskStyle@Base 6.1.20060507 + Nlm_DisableSM@Base 6.1.20060507 + Nlm_EditMuskStyle@Base 6.1.20060507 + Nlm_EnableSM@Base 6.1.20060507 + Nlm_ExitMuskStyles@Base 6.1.20060507 + Nlm_FreeMuskStyleEd@Base 6.1.20060507 + Nlm_GetMuskCParam@Base 6.1.20060507 + Nlm_GetMuskCParamEd@Base 6.1.20060507 + Nlm_GetMuskCurrentSt@Base 6.1.20060507 + Nlm_GetMuskStyleName@Base 6.1.20060507 + Nlm_GetMuskTotalSt@Base 6.1.20060507 + Nlm_GetToolValueSM@Base 6.1.20060507 + Nlm_InitMuskStyles@Base 6.1.20060507 + Nlm_LaunchGeneFeatEd@Base 6.1.20060507 + Nlm_LaunchWebPage@Base 6.1.20060507 + Nlm_LoadMuskFont@Base 6.1.20060507 + Nlm_MuskStyleDialog@Base 6.1.20060507 + Nlm_MuskStyleManager@Base 6.1.20060507 + Nlm_SetMuskCParamEd@Base 6.1.20060507 + Nlm_SetMuskCurrentSt@Base 6.1.20060507 + Nlm_SetMuskManagetTitle@Base 6.1.20060507 + Nlm_SetTDefCColor@Base 6.1.20060507 + Nlm_SetTDefCommon@Base 6.1.20060507 + Nlm_SetTDefExtra@Base 6.1.20060507 + Nlm_SetTDefFeatures@Base 6.1.20060507 + Nlm_SetTDefGroup@Base 6.1.20060507 + Nlm_SetTDefSeq@Base 6.1.20060507 + Nlm_SetToolDefaultSM@Base 6.1.20060507 + Nlm_SetToolsCallbackSM@Base 6.1.20060507 + Nlm_ShowToolsSM@Base 6.1.20060507 + Nlm_ToolDlgCColor@Base 6.1.20060507 + Nlm_ToolDlgCommon@Base 6.1.20060507 + Nlm_ToolDlgExtra@Base 6.1.20060507 + Nlm_ToolDlgFeatures@Base 6.1.20060507 + Nlm_ToolDlgGroup@Base 6.1.20060507 + Nlm_ToolDlgSeq@Base 6.1.20060507 + NonsyToSynItem1@Base 6.1.20060507 + NonsyToSynItem2@Base 6.1.20060507 + NonsyToSynItem3@Base 6.1.20060507 + NonsyToSynItem4@Base 6.1.20060507 + NonsyToSynItem5@Base 6.1.20060507 + NonsyToSynItem6@Base 6.1.20060507 + NormaliseScore@Base 6.1.20060507 + OBJ_@Base 6.1.20060507 + OkToAcceptBatchApplyFeatureDetails@Base 6.1.20070822 + OkToListFeatDefInRemainingFeatures@Base 6.1.20080302 + OldAlignmentEditor@Base 6.1.20060507 + OpenNewAlignmentEditor@Base 6.1.20060507 + OrderCdsmRNA@Base 6.1.20060507 + OrgModTypeDialog@Base 6.1.20070822 + PCCPredictFunc@Base 6.1.20060507 + PCCProc@Base 6.1.20060507 + PanelOffsetFromCharOffsetEx@Base 6.1.20080302 + ParseCollectionDateOk@Base 6.1.20070822 + ParseConfigFile@Base 6.1.20060507 + ParseDstDialog@Base 6.1.20100808 + ParseInferenceText@Base 6.1.20070822 + PicForAlignNode@Base 6.1.20060507 + PopulateGenePopup@Base 6.1.20060507 + PopulateGeneticCodePopup@Base 6.1.20160908 + PopulateSalsaPanel@Base 6.1.20060507 + PopulateTabConfigListColumnListDoc@Base 6.1.20120620 + PredictCodingRegion@Base 6.1.20060507 + PrintBandHeader@Base 6.1.20060507 + PrintContigAlign@Base 6.1.20060507 + PrintContigForOneMap@Base 6.1.20060507 + PrintDataBaseLink@Base 6.1.20060507 + PrintGeneticMarkerForOneMap@Base 6.1.20060507 + PrintMedlineViewForm@Base 6.1.20060507 + PrintTableDisplayRowListToFile@Base 6.1.20060507 + ProduceAlignmentNotes@Base 6.1.20120620 + PropagateFeatDialog@Base 6.1.20060507 + PropagateOneFeat@Base 6.1.20070822 + ProtGenFunc@Base 6.1.20060507 + PubdescGenFunc@Base 6.1.20060507 + PublicationListDialog@Base 6.1.20060507 + PwDistanceItem@Base 6.1.20060507 + PwDistanceLongItem@Base 6.1.20060507 + Query_FetchCount@Base 6.1.20060507 + Query_FetchParsedCount@Base 6.1.20060507 + Query_FetchSeveralCounts@Base 6.1.20060507 + Query_FetchUIDs@Base 6.1.20060507 + Query_GetInfo@Base 6.1.20060507 + QuorumItem@Base 6.1.20060507 + ReSetFeatNode@Base 6.1.20060507 + ReadAAC@Base 6.1.20060507 + ReadAlignmentForSeqEntry@Base 6.1.20120620 + ReadAnyAlignment@Base 6.1.20060507 + ReadContiguouseAlign@Base 6.1.20060507 + ReadInterleaveAlign@Base 6.1.20060507 + ReadLocalAlignment@Base 6.1.20060507 + ReadMatrix@Base 6.1.20060507 + RefineUIDs@Base 6.1.20060507 + RegionOrCommentGenFunc@Base 6.1.20060507 + RememberSqnTempFile@Base 6.1.20080302 + RemoveDuplicateFeatActionDialog@Base 6.1.20110713 + RemoveFeatureFromFilterItem@Base 6.1.20060507 + RemoveFeaturesFromReplaceList@Base 6.1.20081116 + RemoveSelectedFeaturesFromList@Base 6.1.20081116 + RemoveSeqEdCloseFunc@Base 6.1.20100808 + RemoveSeqEntryViewer@Base 6.1.20060507 + RemoveTextFromTextFreeSubSourceModifiers@Base 6.1.20060507 + ReplaceBioSourceGencodePopup@Base 6.1.20060507 + ReplaceToolFormForBioseqView@Base 6.1.20100808 + ReplaceToolFormWithDataForBioseqView@Base 6.1.20110713 + RepopulateValidateFilter@Base 6.1.20060507 + ResetFeatureFunc@Base 6.1.20060507 + RestoreEntityIDFromFile@Base 6.1.20080302 + RestoreEntityIDFromFileEx@Base 6.1.20110713 + RestoreFromFile@Base 6.1.20080302 + RestoreFromFileEx@Base 6.1.20110713 + RetrieveDocs@Base 6.1.20060507 + RnaGenFunc@Base 6.1.20060507 + RnaTypeDialog@Base 6.1.20080302 + RnaTypeFree@Base 6.1.20080302 + RunAutoFixScript@Base 6.1.20110713 + SCP_CompareOrderOrganizeBioseqs@Base 6.1.20060507 + SCP_OrganizeAlnsInSet@Base 6.1.20060507 + SalsaExportDialog@Base 6.1.20060507 + SalsaPanelHasResized@Base 6.1.20060507 + SalsaTextPanel@Base 6.1.20060507 + SaveAllFeatProc@Base 6.1.20060507 + SaveFeatProc@Base 6.1.20060507 + SaveSalsaPanel@Base 6.1.20060507 + SaveStringFromTextAndStripNewlines@Base 6.1.20060507 + ScalePlot@Base 6.1.20060507 + ScrollTextToFile@Base 6.1.20060507 + ScrollToMatchingFeatures@Base 6.1.20081116 + ScrollToNextClickableTextDescription@Base 6.1.20070822 + ScrollToPreviousClickableTextDescription@Base 6.1.20070822 + SearchBioseq@Base 6.1.20060507 + SearchFuncDialog@Base 6.1.20110713 + SelectRegionDialog@Base 6.1.20060507 + SelectSeqDialog@Base 6.1.20060507 + SelectionDialog@Base 6.1.20060507 + SelectionDialogEx@Base 6.1.20060507 + SelectionDialogExEx@Base 6.1.20081116 + SelectiveMacroRun@Base 6.1.20110713 + SeqAlnWindowScrollToAlnPos@Base 6.1.20100808 + SeqAnalFormFree@Base 6.1.20060507 + SeqAnalFormNew@Base 6.1.20060507 + SeqEdCorrectBarMax@Base 6.1.20060507 + SeqEdCorrectBarPage@Base 6.1.20060507 + SeqEdCorrectBarValue@Base 6.1.20060507 + SeqEdGetSlateScrollBar@Base 6.1.20060507 + SeqEdGetValueScrollBar@Base 6.1.20060507 + SeqEdJournalNewTranslate@Base 6.1.20060507 + SeqEdSetCorrectBarMax@Base 6.1.20060507 + SeqEdSetValueScrollBar@Base 6.1.20060507 + SeqEditFunc@Base 6.1.20060507 + SeqFeatPtrToCommon@Base 6.1.20060507 + SeqFeatPtrToFieldPage@Base 6.1.20060507 + SeqFontProc@Base 6.1.20060507 + SeqScrollDataFree@Base 6.1.20060507 + SeqScrollDataNew@Base 6.1.20060507 + SeqnSeqEntrysToFasta@Base 6.1.20060507 + SequenceConstraintDialog@Base 6.1.20110713 + SequenceSelectionDialog@Base 6.1.20060507 + SequenceSelectionDialogEx@Base 6.1.20080302 + SequinGlobalPicture@Base 6.1.20060507 + Sequin_GlobalAlign2Seq@Base 6.1.20060507 + SetBioSourceDialogTaxName@Base 6.1.20060507 + SetBioseqViewTarget@Base 6.1.20060507 + SetCapChangeDialogValue@Base 6.1.20110713 + SetClickableListDialogTitles@Base 6.1.20080302 + SetClickableListDisplayChosen@Base 6.1.20081116 + SetClosestParentIfDuplicating@Base 6.1.20060507 + SetComplexConstraintType@Base 6.1.20120620 + SetConstraintSetDefaultConstraintType@Base 6.1.20160908 + SetDescriptorStreamEditorIdList@Base 6.1.20100808 + SetFeatureTypeInFeatureTypeDialog@Base 6.1.20110713 + SetGenome@Base 6.1.20060507 + SetMatchLocationInIdMatchLocationDlg@Base 6.1.20110713 + SetNewFeatureDefaultInterval@Base 6.1.20060507 + SetSequenceAndStrandForIntervalPage@Base 6.1.20060507 + SetupGeneticCodes@Base 6.1.20060507 + SetupPrintOptions@Base 6.1.20060507 + ShouldSetJustShowAccession@Base 6.1.20060507 + ShouldSetSuppressContext@Base 6.1.20060507 + ShowASN@Base 6.1.20060507 + ShowFeatureFunc@Base 6.1.20060507 + ShowFeatureProc@Base 6.1.20060507 + ShowGeneList@Base 6.1.20060507 + ShowLog@Base 6.1.20160908 + ShowNewNetConfigForm@Base 6.1.20060507 + ShowReplaceWindow@Base 6.1.20060507 + ShowSearchWindow@Base 6.1.20060507 + ShowValidateDoc@Base 6.1.20060507 + ShowValidateWindow@Base 6.1.20060507 + SimpleReplaceDialog@Base 6.1.20110713 + SingleAECRMacroAction@Base 6.1.20081116 + SingleMacroAction@Base 6.1.20110713 + SingleParseAction@Base 6.1.20090301 + SmartDrawText@Base 6.1.20060507 + SmartSeqEntryViewGenFunc@Base 6.1.20060507 + SortByVnpDataIntvalue@Base 6.1.20060507 + SortEnumFieldAssocPtrArray@Base 6.1.20060507 + SortSameSeqInAlignNode@Base 6.1.20060507 + SortSeqFeatInAnnot@Base 6.1.20081116 + SortbyLenItem@Base 6.1.20060507 + SortbySimItem@Base 6.1.20060507 + SpecialEntrezSynchronousQuery@Base 6.1.20060507 + StdDescFormActnProc@Base 6.1.20060507 + StdDescFormActnProcNoFeatureChangeNoMolInfoChange@Base 6.1.20100808 + StdDescFormCleanupProc@Base 6.1.20060507 + StdFeatFormAcceptButtonProc@Base 6.1.20060507 + StdFeatFormActnProc@Base 6.1.20060507 + StdFeatFormCleanupProc@Base 6.1.20060507 + StdFeatIntEdPartialCallback@Base 6.1.20060507 + StdInitFeatFormProc@Base 6.1.20060507 + StdReplaceNotify@Base 6.1.20060507 + StdSeqFeatPtrToFeatFormProc@Base 6.1.20060507 + StdVibrantEditorMsgFunc@Base 6.1.20060507 + StringComboDialog@Base 6.1.20110713 + StringConstraintDialog@Base 6.1.20080302 + StripNewlines@Base 6.1.20080302 + StructuredCommentDatabaseNameDialog@Base 6.1.20110713 + SubSourceTypeDialog@Base 6.1.20070822 + SubmitBlockDialog@Base 6.1.20060507 + SubmitBlockGenFunc@Base 6.1.20060507 + SuspectRuleDialog@Base 6.1.20110713 + TabColumnConfigDialog@Base 6.1.20080302 + TabColumnConfigListDialog@Base 6.1.20080302 + TableDisplayDialog@Base 6.1.20060507 + TermList_UnselectAll@Base 6.1.20060507 + TestInference@Base 6.1.20060507 + TextPortionDialog@Base 6.1.20100808 + TextScrollWindowNew@Base 6.1.20060507 + TextToFeatID@Base 6.1.20100808 + TextToFeatXref@Base 6.1.20100808 + TextTransformSetDialog@Base 6.1.20110713 + ThreeOptionsDlg@Base 6.1.20100808 + TranslateAllBioseq@Base 6.1.20060507 + TruncateLocation@Base 6.1.20070822 + TwoStepExistingText@Base 6.1.20081116 + UDVResetProc@Base 6.1.20060507 + UDV_BuildFeatColorTable@Base 6.1.20060507 + UDV_Build_AA_LayoutPalette@Base 6.1.20060507 + UDV_Build_NA_LayoutPalette@Base 6.1.20060507 + UDV_Build_Other_Colors@Base 6.1.20060507 + UDV_ClickProc@Base 6.1.20060507 + UDV_ComputeBlockByLine@Base 6.1.20060507 + UDV_ComputeLineHeight@Base 6.1.20060507 + UDV_ComputePanelSize@Base 6.1.20060507 + UDV_CreateListBioseqDlg@Base 6.1.20060507 + UDV_DragMouse@Base 6.1.20060507 + UDV_DragProc@Base 6.1.20060507 + UDV_Draw_features@Base 6.1.20060507 + UDV_Draw_features_MAP@Base 6.1.20060507 + UDV_Draw_scale@Base 6.1.20060507 + UDV_Draw_sequence@Base 6.1.20060507 + UDV_FeaturesListBoxFind@Base 6.1.20060507 + UDV_FileClose@Base 6.1.20060507 + UDV_FileOpen@Base 6.1.20060507 + UDV_FontDim@Base 6.1.20060507 + UDV_FreeVDPstruct@Base 6.1.20060507 + UDV_GetClosetSeqLocGivenBspPos@Base 6.1.20060507 + UDV_GetCurrentDispRange@Base 6.1.20060507 + UDV_GetSelectedRegions@Base 6.1.20060507 + UDV_HoldProc@Base 6.1.20060507 + UDV_InitFont@Base 6.1.20060507 + UDV_InitForSequin@Base 6.1.20060507 + UDV_Init_GraphData@Base 6.1.20060507 + UDV_Init_NonAutonomous@Base 6.1.20060507 + UDV_Init_ScaleData@Base 6.1.20060507 + UDV_Init_vdp_struct@Base 6.1.20060507 + UDV_InvalRegion@Base 6.1.20060507 + UDV_IsLetterSelected@Base 6.1.20060507 + UDV_LoadSpecificEditor@Base 6.1.20060507 + UDV_Logo_onDraw@Base 6.1.20060507 + UDV_ManageDragHoldActions@Base 6.1.20060507 + UDV_NetOpen@Base 6.1.20060507 + UDV_ObjRegAutonomous@Base 6.1.20060507 + UDV_ReleaseMouse@Base 6.1.20060507 + UDV_ReleaseProc@Base 6.1.20060507 + UDV_Resize_Logo_Panel@Base 6.1.20060507 + UDV_SelectFeatInFeatDlg@Base 6.1.20060507 + UDV_SetupMenus@Base 6.1.20060507 + UDV_WinMainCleanupExtraProc@Base 6.1.20060507 + UDV_WinMainProgQuit@Base 6.1.20060507 + UDV_WinMainResize@Base 6.1.20060507 + UDV_analyze_SEP_for_open@Base 6.1.20060507 + UDV_create_buffer@Base 6.1.20060507 + UDV_deselect_feature@Base 6.1.20060507 + UDV_draw_double_cursor@Base 6.1.20060507 + UDV_draw_horizontal_bar@Base 6.1.20060507 + UDV_draw_horizontal_line@Base 6.1.20060507 + UDV_draw_rectangle@Base 6.1.20060507 + UDV_draw_vertical_bar@Base 6.1.20060507 + UDV_draw_viewer@Base 6.1.20060507 + UDV_init_bsp_forViewer@Base 6.1.20060507 + UDV_resize_viewer@Base 6.1.20060507 + UDV_select_feature@Base 6.1.20060507 + UDV_set_MainControls@Base 6.1.20060507 + UDV_set_MainMenus@Base 6.1.20060507 + UDV_set_PullMenus@Base 6.1.20060507 + UnDViewerVScrlProc@Base 6.1.20060507 + UnDViewerVScrlUpdate@Base 6.1.20060507 + UntranslateFunc@Base 6.1.20060507 + UpdateGeneLocation@Base 6.1.20060507 + UpdateOneSeqAlignFarPointer@Base 6.1.20081116 + UpdateSeqAlign@Base 6.1.20060507 + UpdateSeqViewPanel@Base 6.1.20060507 + UpdatemRNAAfterEditing@Base 6.1.20110713 + VSMAddMenu@Base 6.1.20060507 + VSMAddToMenu@Base 6.1.20060507 + VSMDescriptorAsnSave@Base 6.1.20080302 + VSMEntityDraw@Base 6.1.20060507 + VSMExportNucFeatureTable@Base 6.1.20060507 + VSMExportNucFeatureTableSelectedFeatures@Base 6.1.20060507 + VSMExportNucFeatureTableSelectedFeaturesSuppressProteinIDs@Base 6.1.20060507 + VSMExportNucFeatureTableSuppressProteinIDs@Base 6.1.20060507 + VSMExportNucFeatureTableWithoutSources@Base 6.1.20060507 + VSMExportNucFeatureTableWithoutSourcesSuppressProteinIDs@Base 6.1.20060507 + VSMExportProteinFeatureTable@Base 6.1.20060507 + VSMFastaNucOpen@Base 6.1.20060507 + VSMFastaNucSave@Base 6.1.20060507 + VSMFastaProtOpen@Base 6.1.20060507 + VSMFastaProtSave@Base 6.1.20060507 + VSMFastaProtSaveWithProduct@Base 6.1.20100808 + VSMFastaSortedProtSave@Base 6.1.20060507 + VSMFileInit@Base 6.1.20060507 + VSMGenericBinAsnOpen@Base 6.1.20060507 + VSMGenericBinAsnSave@Base 6.1.20060507 + VSMGenericTextAsnOpen@Base 6.1.20060507 + VSMGenericTextAsnSave@Base 6.1.20060507 + VSMPictMsgFunc@Base 6.1.20060507 + VSMSaveSetsAsFiles@Base 6.1.20090719 + VSeqMgrDelete@Base 6.1.20060507 + VSeqMgrGenFunc@Base 6.1.20060507 + VSeqMgrGet@Base 6.1.20060507 + VSeqMgrInit@Base 6.1.20060507 + VSeqMgrMsgFunc@Base 6.1.20060507 + VSeqMgrRun@Base 6.1.20060507 + VSeqMgrShow@Base 6.1.20060507 + ValNodeChoiceMatch@Base 6.1.20060507 + ValNodeSelectionDialog@Base 6.1.20060507 + ValNodeSelectionDialogEx@Base 6.1.20060507 + ValNodeSelectionDialogExEx@Base 6.1.20081116 + ValNodeSimpleDataFree@Base 6.1.20060507 + ValNodeStringCopy@Base 6.1.20060507 + ValNodeStringMatch@Base 6.1.20060507 + ValNodeStringName@Base 6.1.20060507 + ValidErrCallback@Base 6.1.20070822 + ValidErrHook@Base 6.1.20060507 + ValidateSeqAlignandACC@Base 6.1.20061015 + ValidateSeqAlignandACCFromData@Base 6.1.20061015 + ValidateSeqAlignandACCInSeqEntry@Base 6.1.20061015 + ValueListDialog@Base 6.1.20070822 + VibrantToDatePtr@Base 6.1.20060507 + ViewSortedProteins@Base 6.1.20070822 + VisStrGenFunc@Base 6.1.20060507 + VisStringDialogToGbquals@Base 6.1.20060507 + VscrlProc@Base 6.1.20060507 + WWW_PrintGeneRef@Base 6.1.20060507 + WordSubstitutionSetDialog@Base 6.1.20110713 + WriteAlignmentContiguousToFile@Base 6.1.20060507 + WriteAlignmentInterleaveToFile@Base 6.1.20060507 + WriteAlignmentInterleaveToFileEx@Base 6.1.20061015 + WriteBadSpecificHostTable@Base 6.1.20070822 + XYPlot@Base 6.1.20060507 + accessionlist_types@Base 6.1.20080302 + accessionlist_widths@Base 6.1.20080302 + accn_type_alist@Base 6.1.20060507 + add_attribute_pen@Base 6.1.20060507 + alnPageData@Base 6.1.20060507 + amino_acid_order@Base 6.1.20060507 + asn2gphGphPageData@Base 6.1.20060507 + asnPageData@Base 6.1.20060507 + author_types@Base 6.1.20060507 + biosource_genome_simple_alist@Base 6.1.20060507 + biosource_origin_alist@Base 6.1.20060507 + blosum30mt@Base 6.1.20060507 + blosum40mt@Base 6.1.20060507 + blosum45mt@Base 6.1.20060507 + blosum62mt2@Base 6.1.20060507 + blosum62mt@Base 6.1.20060507 + blosum80mt@Base 6.1.20060507 + codebreak_alists@Base 6.1.20060507 + codebreak_types@Base 6.1.20060507 + codebreak_widths@Base 6.1.20060507 + codon_start_values@Base 6.1.20070822 + collect_alignnode_from_slp@Base 6.1.20060507 + compose_g_legend@Base 6.1.20060507 + create_gene_data@Base 6.1.20060507 + custom_color@Base 6.1.20060507 + ddbjPageData@Base 6.1.20060507 + direction_values@Base 6.1.20070822 + do_copy@Base 6.1.20060507 + do_cut@Base 6.1.20060507 + do_paste@Base 6.1.20060507 + do_resize_panel@Base 6.1.20060507 + do_resize_window@Base 6.1.20060507 + draw_one_align@Base 6.1.20060507 + dskPageData@Base 6.1.20060507 + emblPageData@Base 6.1.20060507 + enum_bond_alist@Base 6.1.20060507 + enum_site_alist@Base 6.1.20060507 + ep_t@Base 6.1.20060507 + ep_types_f@Base 6.1.20060507 + ep_types_m@Base 6.1.20060507 + ep_w@Base 6.1.20060507 + ep_width_f@Base 6.1.20060507 + ep_width_m@Base 6.1.20060507 + evcat_alist@Base 6.1.20110713 + experiment_category_alist@Base 6.1.20160908 + experiment_types@Base 6.1.20160908 + experiment_widths@Base 6.1.20160908 + feature2segment@Base 6.1.20060507 + find_map_pos@Base 6.1.20060507 + free_global_draw@Base 6.1.20060507 + fstaPageData@Base 6.1.20060507 + ftblPageData@Base 6.1.20060507 + gbgnPageData@Base 6.1.20060507 + gbqual_edit_list@Base 6.1.20070822 + gbqual_types@Base 6.1.20060507 + gbqual_widths@Base 6.1.20060507 + gbseqPageData@Base 6.1.20060507 + gcIdToIndex@Base 6.1.20060507 + gcIndexToId@Base 6.1.20060507 + gcNames@Base 6.1.20060507 + gene2segment@Base 6.1.20060507 + get_current_class@Base 6.1.20060507 + get_enz_color@Base 6.1.20060507 + get_map_type@Base 6.1.20060507 + get_seg_color@Base 6.1.20060507 + getwindow_frompanel@Base 6.1.20060507 + gnbkPageData@Base 6.1.20060507 + gnptPageData@Base 6.1.20060507 + gon120mt@Base 6.1.20060507 + gon160mt@Base 6.1.20060507 + gon250mt@Base 6.1.20060507 + gon300mt@Base 6.1.20060507 + gon350mt@Base 6.1.20060507 + gon40mt@Base 6.1.20060507 + gon80mt@Base 6.1.20060507 + gphPageData@Base 6.1.20060507 + has_cyto_map@Base 6.1.20060507 + hoffset2voffset@Base 6.1.20060507 + idmat@Base 6.1.20060507 + import_featdef_alist@Base 6.1.20060507 + inference_alist@Base 6.1.20060507 + interval_types@Base 6.1.20060507 + interval_widths@Base 6.1.20060507 + inval_all@Base 6.1.20060507 + inval_allines@Base 6.1.20060507 + inval_panel@Base 6.1.20060507 + inval_pep@Base 6.1.20060507 + inval_rect@Base 6.1.20060507 + inval_rectidselected@Base 6.1.20060507 + inval_selstruct@Base 6.1.20060507 + inval_selstructloc@Base 6.1.20060507 + inval_selstructloc_forfeat@Base 6.1.20060507 + inval_selstructpos@Base 6.1.20060507 + inval_selstructpos_tobottom@Base 6.1.20060507 + inval_window@Base 6.1.20060507 + kDisableStrainForwardAttrib@Base 6.1.20160908 + kDoNotEditTitle@Base 6.1.20160908 + kTransSplicing@Base 6.1.20160908 + legacy_pseudogene_alist@Base 6.1.20120620 + load_align_label_rectangle@Base 6.1.20060507 + load_align_option_for_graphic@Base 6.1.20060507 + locate_point@Base 6.1.20060507 + locate_region@Base 6.1.20060507 + mRNAFilter@Base 6.1.20060507 + mRNALookup@Base 6.1.20060507 + mRNATrack@Base 6.1.20060507 + mSM_allfeatureNames@Base 6.1.20060507 + mapPageData@Base 6.1.20060507 + map_gene_location@Base 6.1.20060507 + map_one_location_to_slp_list@Base 6.1.20060507 + merge_same_itemID@Base 6.1.20060507 + mobile_element_keywords@Base 6.1.20070822 + modify_insert_fnode@Base 6.1.20060507 + mol_type_values@Base 6.1.20070822 + months_alist@Base 6.1.20060507 + new_pseudogene_alist@Base 6.1.20120620 + nucleotide_alphabet@Base 6.1.20120620 + numAccnTypePrefixes@Base 6.1.20080302 + numGeneticCodes@Base 6.1.20060507 + on_click@Base 6.1.20060507 + on_drag@Base 6.1.20060507 + on_draw@Base 6.1.20060507 + on_hold@Base 6.1.20060507 + on_key@Base 6.1.20060507 + on_release@Base 6.1.20060507 + on_time@Base 6.1.20060507 + organelle_values@Base 6.1.20070822 + orgmod_types@Base 6.1.20060507 + orgmod_widths@Base 6.1.20060507 + pam120mt@Base 6.1.20060507 + pam20mt@Base 6.1.20060507 + pam250mt@Base 6.1.20060507 + pam350mt@Base 6.1.20060507 + pam60mt@Base 6.1.20060507 + pcr_primer_dlg_types@Base 6.1.20110713 + pcr_primer_dlg_widths@Base 6.1.20110713 + pic_for_f_legend@Base 6.1.20060507 + prev_primID@Base 6.1.20060507 + print_contig_html_color@Base 6.1.20060507 + print_genome_interval@Base 6.1.20060507 + program_alist@Base 6.1.20060507 + progressW@Base 6.1.20060507 + protein_alphabet@Base 6.1.20120620 + qualPageData@Base 6.1.20060507 + readonlystring_types@Base 6.1.20060507 + recombination_class_keywords@Base 6.1.20170106 + regulatory_class_keywords@Base 6.1.20160908 + replace_region@Base 6.1.20060507 + repopulate_panel@Base 6.1.20060507 + rf10ItemProc@Base 6.1.20060507 + rf1ItemProc@Base 6.1.20060507 + rf2ItemProc@Base 6.1.20060507 + rf3ItemProc@Base 6.1.20060507 + rf4ItemProc@Base 6.1.20060507 + rf5ItemProc@Base 6.1.20060507 + rf6ItemProc@Base 6.1.20060507 + rf7ItemProc@Base 6.1.20060507 + rf8ItemProc@Base 6.1.20060507 + rf9ItemProc@Base 6.1.20060507 + rpt_type_values@Base 6.1.20070822 + satellite_keywords@Base 6.1.20081116 + seqAlnPnlPageData@Base 6.1.20060507 + seqPageData@Base 6.1.20060507 + seqalign_write@Base 6.1.20060507 + seqannot_write@Base 6.1.20060507 + seqentry_read@Base 6.1.20060507 + seqpnlPageData@Base 6.1.20060507 + sesp_to_pept@Base 6.1.20060507 + setUpLetterColor@Base 6.1.20060507 + smartBioseqViewForm@Base 6.1.20060507 + spop@Base 6.1.20060507 + startPt@Base 6.1.20060507 + std_author_widths@Base 6.1.20060507 + stopPt@Base 6.1.20060507 + str_author_widths@Base 6.1.20060507 + strip_repeat_feature@Base 6.1.20060507 + subsource_types@Base 6.1.20060507 + subsource_widths@Base 6.1.20060507 + sumPageData@Base 6.1.20060507 + to_update_prompt@Base 6.1.20060507 + true_false@Base 6.1.20090719 + udvPageData@Base 6.1.20060507 + update_codonstartbt@Base 6.1.20060507 + update_edititem@Base 6.1.20060507 + update_featpept@Base 6.1.20060507 + update_translateitem@Base 6.1.20060507 + visstring_types@Base 6.1.20060507 + visstring_widths@Base 6.1.20060507 + xmlPageData@Base 6.1.20060507 +libvibnet.so.6 libvibrant6b #MINVER# + CreateClearUnusedItem@Base 6.1.20060507 + CreateDocSumForm@Base 6.1.20060507 + CreateEntrezPrefsDialog@Base 6.1.20060507 + CreateNeighborDelayChoice@Base 6.1.20060507 + CreateQueryTypeChoice@Base 6.1.20060507 + CreateTermListForm@Base 6.1.20060507 + DSLoadUidListProc@Base 6.1.20060507 + DSSaveUidListProc@Base 6.1.20060507 + DatabaseFromName@Base 6.1.20060507 + DisplayFontChangeProc@Base 6.1.20060507 + DocSumCanSaveFasta@Base 6.1.20060507 + DocSumFontChangeProc@Base 6.1.20060507 + EntrezPrefsFree@Base 6.1.20060507 + EntrezPrefsNew@Base 6.1.20060507 + ExportDocSumFasta@Base 6.1.20060507 + FieldFromTag@Base 6.1.20060507 + LaunchRecordViewer@Base 6.1.20060507 + LoadDocsumOptionsMenu@Base 6.1.20060507 + LoadNamedUidList@Base 6.1.20060507 + MakeDatabaseAlist@Base 6.1.20060507 + MakeFieldAlist@Base 6.1.20060507 + MakeViewerLinkControls@Base 6.1.20060507 + RetrieveDocuments@Base 6.1.20060507 + RetrieveSimpleSeqs@Base 6.1.20060507 + ShowNetConfigForm@Base 6.1.20060507 + TLLoadUidListProc@Base 6.1.20060507 + TLSaveUidListProc@Base 6.1.20060507 + UpdateViewerLinkTarget@Base 6.1.20060507 + UseDelayedNeighbor@Base 6.1.20060507 + UsingDelayedNeighbor@Base 6.1.20060507 + UsingTextQuery@Base 6.1.20060507 +libvibrantOGL.so.6 libvibrant6b #MINVER# + AddOval@Base 6.1.20060507 + AppendPalette@Base 6.1.20060507 + AppendTableText@Base 6.1.20060507 + BLACK_COLOR@Base 6.1.20060507 + BLUE_COLOR@Base 6.1.20060507 + BgColorDlg3D@Base 6.1.20060507 + CYAN_COLOR@Base 6.1.20060507 + CreateTagListDialogEx3@Base 6.1.20070822 + CreateTagListDialogEx@Base 6.1.20060507 + CreateTagListDialogExEx@Base 6.1.20060507 + DoNothingMA@Base 6.1.20060507 + GREEN_COLOR@Base 6.1.20060507 + GetPaletteValue@Base 6.1.20060507 + GetTableGray@Base 6.1.20060507 + GetTableHilight@Base 6.1.20060507 + GetTableText@Base 6.1.20060507 + MAGENTA_COLOR@Base 6.1.20060507 + MA_AddAction@Base 6.1.20060507 + MA_AddGroup@Base 6.1.20060507 + MA_Create@Base 6.1.20060507 + MA_Destroy@Base 6.1.20060507 + MA_GetExtra@Base 6.1.20060507 + MA_GetPanel@Base 6.1.20060507 + MA_GetVisible@Base 6.1.20060507 + MA_LinkPanel@Base 6.1.20060507 + MA_Reset@Base 6.1.20060507 + MA_SetAction@Base 6.1.20060507 + MA_SetExtra@Base 6.1.20060507 + MA_SetGroup@Base 6.1.20060507 + MA_SetVisible@Base 6.1.20060507 + MA_UnlinkPanel@Base 6.1.20060507 + MA_UnsetAll@Base 6.1.20060507 + MA_UnsetGroup@Base 6.1.20060507 + NS_OpenURL@Base 6.1.20060507 + NS_ResetWindow@Base 6.1.20060507 + NS_SendCommand@Base 6.1.20060507 + NS_WindowFree@Base 6.1.20060507 + Nlm_ActiveWindow@Base 6.1.20060507 + Nlm_AddArc@Base 6.1.20060507 + Nlm_AddAttribute@Base 6.1.20060507 + Nlm_AddBitmap@Base 6.1.20060507 + Nlm_AddCylinder3D@Base 6.1.20060507 + Nlm_AddHalfWorm3D@Base 6.1.20060507 + Nlm_AddInvFrame@Base 6.1.20060507 + Nlm_AddLabel@Base 6.1.20060507 + Nlm_AddLine3D@Base 6.1.20060507 + Nlm_AddLine@Base 6.1.20060507 + Nlm_AddMarker@Base 6.1.20060507 + Nlm_AddPoly3D@Base 6.1.20060507 + Nlm_AddPolygon@Base 6.1.20060507 + Nlm_AddPrim3D@Base 6.1.20060507 + Nlm_AddPrimitive@Base 6.1.20060507 + Nlm_AddPt@Base 6.1.20060507 + Nlm_AddRectangle@Base 6.1.20060507 + Nlm_AddRoundedRectangle@Base 6.1.20060507 + Nlm_AddSegRect@Base 6.1.20060507 + Nlm_AddSegment3D@Base 6.1.20060507 + Nlm_AddSilentSegRect@Base 6.1.20060507 + Nlm_AddSntRectangle@Base 6.1.20060507 + Nlm_AddSphere3D@Base 6.1.20060507 + Nlm_AddSubwindowShell@Base 6.1.20060507 + Nlm_AddSymbol@Base 6.1.20060507 + Nlm_AddText3D@Base 6.1.20060507 + Nlm_AddTextLabel@Base 6.1.20060507 + Nlm_AddVertPoly3D@Base 6.1.20060507 + Nlm_Adjust3D@Base 6.1.20060507 + Nlm_AdjustDocScroll@Base 6.1.20060507 + Nlm_AdjustPrnt@Base 6.1.20060507 + Nlm_Advance@Base 6.1.20060507 + Nlm_AlertWindow@Base 6.1.20060507 + Nlm_AlignObjects@Base 6.1.20060507 + Nlm_AllLayerSet3D@Base 6.1.20060507 + Nlm_AllParentsButWindowVisible@Base 6.1.20060507 + Nlm_AllParentsEnabled@Base 6.1.20060507 + Nlm_AllParentsVisible@Base 6.1.20060507 + Nlm_AllocPalette3D@Base 6.1.20060507 + Nlm_AllocateImage@Base 6.1.20060507 + Nlm_AppendItem@Base 6.1.20060507 + Nlm_AppendText@Base 6.1.20060507 + Nlm_AppleMenu@Base 6.1.20060507 + Nlm_ArrowCursor@Base 6.1.20060507 + Nlm_Ascent@Base 6.1.20060507 + Nlm_AssignPrinterFont@Base 6.1.20060507 + Nlm_AttachInstance@Base 6.1.20060507 + Nlm_AttachPicture3D@Base 6.1.20060507 + Nlm_AttachPicture@Base 6.1.20060507 + Nlm_Autonomous3DPanel@Base 6.1.20060507 + Nlm_AutonomousPanel4@Base 6.1.20060507 + Nlm_AutonomousPanel@Base 6.1.20060507 + Nlm_Black@Base 6.1.20060507 + Nlm_Blue@Base 6.1.20060507 + Nlm_BoxInViewport@Base 6.1.20060507 + Nlm_Break@Base 6.1.20060507 + Nlm_BulkAppendItem@Base 6.1.20060507 + Nlm_CaptureSlateFocus@Base 6.1.20060507 + Nlm_CardToStr@Base 6.1.20060507 + Nlm_ChangeAddPrimOrder@Base 6.1.20060507 + Nlm_ChangePrim3D@Base 6.1.20060507 + Nlm_ChangePrimAttribute@Base 6.1.20060507 + Nlm_ChangeSegment3D@Base 6.1.20060507 + Nlm_ChangeSentinelRectangle@Base 6.1.20060507 + Nlm_CharWidth@Base 6.1.20060507 + Nlm_CheckBox@Base 6.1.20060507 + Nlm_CheckBoxEx@Base 6.1.20170106 + Nlm_CheckX@Base 6.1.20060507 + Nlm_ChoiceGroup@Base 6.1.20060507 + Nlm_ChoiceItem@Base 6.1.20060507 + Nlm_ChooseColorDialog@Base 6.1.20060507 + Nlm_ChooseFont@Base 6.1.20060507 + Nlm_CleanUpDrawingTools@Base 6.1.20060507 + Nlm_CleanupPrimitive@Base 6.1.20060507 + Nlm_ClearItemsInGroup@Base 6.1.20060507 + Nlm_ClearRgn@Base 6.1.20060507 + Nlm_ClearText@Base 6.1.20060507 + Nlm_ClipPrintingRect@Base 6.1.20060507 + Nlm_ClipRect@Base 6.1.20060507 + Nlm_ClipRgn@Base 6.1.20060507 + Nlm_ClipboardHasString@Base 6.1.20060507 + Nlm_ClipboardToString@Base 6.1.20060507 + Nlm_CommandItem@Base 6.1.20060507 + Nlm_ComputerTime@Base 6.1.20060507 + Nlm_CopyAllViewer@Base 6.1.20060507 + Nlm_CopyBits@Base 6.1.20060507 + Nlm_CopyFont@Base 6.1.20060507 + Nlm_CopyMode@Base 6.1.20060507 + Nlm_CopyPixmap@Base 6.1.20060507 + Nlm_CopyText@Base 6.1.20060507 + Nlm_CopyViewer@Base 6.1.20060507 + Nlm_CopyWindowImage@Base 6.1.20060507 + Nlm_CorrectBarMax@Base 6.1.20060507 + Nlm_CorrectBarPage@Base 6.1.20060507 + Nlm_CorrectBarValue@Base 6.1.20060507 + Nlm_CountGroupItems@Base 6.1.20060507 + Nlm_CountItems@Base 6.1.20060507 + Nlm_Courier@Base 6.1.20060507 + Nlm_CreateControls3D@Base 6.1.20060507 + Nlm_CreateEnumListDialog@Base 6.1.20060507 + Nlm_CreateEnumPopupDialog@Base 6.1.20060507 + Nlm_CreateEnumPopupListInitName@Base 6.1.20060507 + Nlm_CreateEnumPopupListInitVal@Base 6.1.20060507 + Nlm_CreateFolderTabButtons@Base 6.1.20120620 + Nlm_CreateFolderTabs@Base 6.1.20060507 + Nlm_CreateFont@Base 6.1.20060507 + Nlm_CreateGIF@Base 6.1.20060507 + Nlm_CreateImage@Base 6.1.20060507 + Nlm_CreateLink@Base 6.1.20060507 + Nlm_CreatePicture3D@Base 6.1.20060507 + Nlm_CreatePicture@Base 6.1.20060507 + Nlm_CreateRgn@Base 6.1.20060507 + Nlm_CreateSegment@Base 6.1.20060507 + Nlm_CreateTagListDialog@Base 6.1.20060507 + Nlm_CreateTextTabs@Base 6.1.20060507 + Nlm_CreateViewer3D@Base 6.1.20060507 + Nlm_CreateViewer@Base 6.1.20060507 + Nlm_CrossCursor@Base 6.1.20060507 + Nlm_CurrentText@Base 6.1.20060507 + Nlm_CurrentVisibleText@Base 6.1.20060507 + Nlm_CurrentWindow@Base 6.1.20060507 + Nlm_CustomPanel@Base 6.1.20060507 + Nlm_CutText@Base 6.1.20060507 + Nlm_Cyan@Base 6.1.20060507 + Nlm_Dark@Base 6.1.20060507 + Nlm_Dashed@Base 6.1.20060507 + Nlm_DecodeColor@Base 6.1.20060507 + Nlm_DefaultButton@Base 6.1.20060507 + Nlm_DefaultButtonEx@Base 6.1.20170106 + Nlm_DelSubwindowShell@Base 6.1.20060507 + Nlm_DeleteControls3D@Base 6.1.20060507 + Nlm_DeleteFont@Base 6.1.20060507 + Nlm_DeleteImage@Base 6.1.20060507 + Nlm_DeleteItem@Base 6.1.20060507 + Nlm_DeletePicture3D@Base 6.1.20060507 + Nlm_DeletePicture@Base 6.1.20060507 + Nlm_DeletePrim3D@Base 6.1.20060507 + Nlm_DeletePrim@Base 6.1.20060507 + Nlm_DeleteSegment3D@Base 6.1.20060507 + Nlm_DeleteSegment@Base 6.1.20060507 + Nlm_DeleteViewer3D@Base 6.1.20060507 + Nlm_DeleteViewer@Base 6.1.20060507 + Nlm_DependentPrompt@Base 6.1.20060507 + Nlm_Descent@Base 6.1.20060507 + Nlm_DeskAccGroup@Base 6.1.20060507 + Nlm_DestroyGIF@Base 6.1.20060507 + Nlm_DestroyRgn@Base 6.1.20060507 + Nlm_DiagGetRecordCount@Base 6.1.20060507 + Nlm_DiagGetRecordStr@Base 6.1.20060507 + Nlm_DiagGetRecordType@Base 6.1.20060507 + Nlm_DiagHasErrorRec@Base 6.1.20060507 + Nlm_DiagPutRecord@Base 6.1.20060507 + Nlm_DiagReset@Base 6.1.20060507 + Nlm_DialogText@Base 6.1.20060507 + Nlm_DialogTextWithFont@Base 6.1.20120620 + Nlm_DialogToPointer@Base 6.1.20060507 + Nlm_DiffRgn@Base 6.1.20060507 + Nlm_Disable@Base 6.1.20060507 + Nlm_DisplayFancy@Base 6.1.20060507 + Nlm_DisplayFile@Base 6.1.20060507 + Nlm_DkGray@Base 6.1.20060507 + Nlm_DoAction@Base 6.1.20060507 + Nlm_DoActivate@Base 6.1.20060507 + Nlm_DoAdjustPrnt@Base 6.1.20060507 + Nlm_DoCallback@Base 6.1.20060507 + Nlm_DoDeactivate@Base 6.1.20060507 + Nlm_DoDisable@Base 6.1.20060507 + Nlm_DoEnable@Base 6.1.20060507 + Nlm_DoGainFocus@Base 6.1.20060507 + Nlm_DoGetOffset@Base 6.1.20060507 + Nlm_DoGetPosition@Base 6.1.20060507 + Nlm_DoGetStatus@Base 6.1.20060507 + Nlm_DoGetTitle@Base 6.1.20060507 + Nlm_DoGetValue@Base 6.1.20060507 + Nlm_DoHide@Base 6.1.20060507 + Nlm_DoLinkIn@Base 6.1.20060507 + Nlm_DoLoseFocus@Base 6.1.20060507 + Nlm_DoRemove@Base 6.1.20060507 + Nlm_DoReset@Base 6.1.20060507 + Nlm_DoSelect@Base 6.1.20060507 + Nlm_DoSendChar@Base 6.1.20060507 + Nlm_DoSendFocus@Base 6.1.20060507 + Nlm_DoSetOffset@Base 6.1.20060507 + Nlm_DoSetPosition@Base 6.1.20060507 + Nlm_DoSetRange@Base 6.1.20060507 + Nlm_DoSetStatus@Base 6.1.20060507 + Nlm_DoSetTitle@Base 6.1.20060507 + Nlm_DoSetValue@Base 6.1.20060507 + Nlm_DoShow@Base 6.1.20060507 + Nlm_DocumentPanel@Base 6.1.20060507 + Nlm_DocumentWindow@Base 6.1.20060507 + Nlm_Dotted@Base 6.1.20060507 + Nlm_DoubleToStr@Base 6.1.20060507 + Nlm_DrawLine@Base 6.1.20060507 + Nlm_DrawPrimitive@Base 6.1.20060507 + Nlm_DrawSegment@Base 6.1.20060507 + Nlm_DrawString@Base 6.1.20060507 + Nlm_DrawText@Base 6.1.20060507 + Nlm_DuplicateEnumFieldAlist@Base 6.1.20060507 + Nlm_Empty@Base 6.1.20060507 + Nlm_EmptyRect@Base 6.1.20060507 + Nlm_EmptyRgn@Base 6.1.20060507 + Nlm_Enable@Base 6.1.20060507 + Nlm_Enabled@Base 6.1.20060507 + Nlm_EndPage@Base 6.1.20060507 + Nlm_EndPicture@Base 6.1.20060507 + Nlm_EndPrinting@Base 6.1.20060507 + Nlm_EqualFontSpec@Base 6.1.20060507 + Nlm_EqualPt@Base 6.1.20060507 + Nlm_EqualRect@Base 6.1.20060507 + Nlm_EqualRgn@Base 6.1.20060507 + Nlm_EraseArc@Base 6.1.20060507 + Nlm_EraseMode@Base 6.1.20060507 + Nlm_EraseOval@Base 6.1.20060507 + Nlm_ErasePoly@Base 6.1.20060507 + Nlm_EraseQuadrant@Base 6.1.20060507 + Nlm_EraseRect@Base 6.1.20060507 + Nlm_EraseRgn@Base 6.1.20060507 + Nlm_EraseRoundRect@Base 6.1.20060507 + Nlm_EraseWindow@Base 6.1.20060507 + Nlm_EstimateScaling@Base 6.1.20060507 + Nlm_EventAvail@Base 6.1.20060507 + Nlm_Execv@Base 6.1.20060507 + Nlm_ExploreSegment@Base 6.1.20060507 + Nlm_ExportDialog@Base 6.1.20060507 + Nlm_ExportForm@Base 6.1.20060507 + Nlm_ExtendedList@Base 6.1.20060507 + Nlm_ExtractTagListColumn@Base 6.1.20060507 + Nlm_FindAvailableFonts@Base 6.1.20060507 + Nlm_FindFormMenuItem@Base 6.1.20060507 + Nlm_FindItem@Base 6.1.20060507 + Nlm_FindNextResidentFont@Base 6.1.20060507 + Nlm_FindPrim3D@Base 6.1.20060507 + Nlm_FindSegPrim@Base 6.1.20060507 + Nlm_FindSegment@Base 6.1.20060507 + Nlm_FineGranularitySleep@Base 6.1.20060507 + Nlm_FitStringWidth@Base 6.1.20060507 + Nlm_FixedWindow@Base 6.1.20060507 + Nlm_FloatingWindow@Base 6.1.20060507 + Nlm_FlushEvents@Base 6.1.20060507 + Nlm_FontGroup@Base 6.1.20060507 + Nlm_FontHeight@Base 6.1.20060507 + Nlm_FontSpecToStr@Base 6.1.20060507 + Nlm_ForceFormat@Base 6.1.20060507 + Nlm_FormCommandItem@Base 6.1.20060507 + Nlm_FormToPointer@Base 6.1.20060507 + Nlm_FrameArc@Base 6.1.20060507 + Nlm_FrameOval@Base 6.1.20060507 + Nlm_FramePoly@Base 6.1.20060507 + Nlm_FrameQuadrant@Base 6.1.20060507 + Nlm_FrameRect@Base 6.1.20060507 + Nlm_FrameRgn@Base 6.1.20060507 + Nlm_FrameRoundRect@Base 6.1.20060507 + Nlm_FreeBars@Base 6.1.20060507 + Nlm_FreeButtons@Base 6.1.20060507 + Nlm_FreeEnumFieldAlist@Base 6.1.20060507 + Nlm_FreeExtras@Base 6.1.20060507 + Nlm_FreeForms@Base 6.1.20060507 + Nlm_FreeGroup@Base 6.1.20060507 + Nlm_FreeLists@Base 6.1.20060507 + Nlm_FreeMenus@Base 6.1.20060507 + Nlm_FreePrompt@Base 6.1.20060507 + Nlm_FreeSlate@Base 6.1.20060507 + Nlm_FreeTexts@Base 6.1.20060507 + Nlm_FreeWindows@Base 6.1.20060507 + Nlm_FrontWindow@Base 6.1.20060507 + Nlm_FrozenWindow@Base 6.1.20060507 + Nlm_GeneralPanel@Base 6.1.20060507 + Nlm_GeneralSlate@Base 6.1.20060507 + Nlm_GetAllParentsEnabled@Base 6.1.20060507 + Nlm_GetAllParentsVisible@Base 6.1.20060507 + Nlm_GetArgs@Base 6.1.20060507 + Nlm_GetArgsSilent@Base 6.1.20060507 + Nlm_GetBarMax@Base 6.1.20060507 + Nlm_GetBarValue@Base 6.1.20060507 + Nlm_GetBestOGLVisual@Base 6.1.20060507 + Nlm_GetBoxData@Base 6.1.20060507 + Nlm_GetChild@Base 6.1.20060507 + Nlm_GetChoiceTitle@Base 6.1.20060507 + Nlm_GetClassPtr@Base 6.1.20060507 + Nlm_GetColParams@Base 6.1.20060507 + Nlm_GetColor3D@Base 6.1.20060507 + Nlm_GetColor@Base 6.1.20060507 + Nlm_GetColorImage@Base 6.1.20060507 + Nlm_GetColorRGB@Base 6.1.20060507 + Nlm_GetDocData@Base 6.1.20060507 + Nlm_GetDocHighlight@Base 6.1.20060507 + Nlm_GetDocParams4@Base 6.1.20060507 + Nlm_GetDocParams@Base 6.1.20060507 + Nlm_GetDocText@Base 6.1.20060507 + Nlm_GetEnabled@Base 6.1.20060507 + Nlm_GetEnumName@Base 6.1.20060507 + Nlm_GetEnumPopup@Base 6.1.20060507 + Nlm_GetEnumPopupByName@Base 6.1.20060507 + Nlm_GetExtraData@Base 6.1.20060507 + Nlm_GetFixedColormap@Base 6.1.20060507 + Nlm_GetFont@Base 6.1.20060507 + Nlm_GetFontEx@Base 6.1.20060507 + Nlm_GetFontSpec@Base 6.1.20060507 + Nlm_GetFoundPrim3D@Base 6.1.20060507 + Nlm_GetGraphicData@Base 6.1.20060507 + Nlm_GetHitWindow@Base 6.1.20060507 + Nlm_GetImageSize@Base 6.1.20060507 + Nlm_GetInputChar@Base 6.1.20060507 + Nlm_GetInputFileName@Base 6.1.20060507 + Nlm_GetInputFileNameEx@Base 6.1.20170106 + Nlm_GetItemIndex@Base 6.1.20060507 + Nlm_GetItemParams4@Base 6.1.20060507 + Nlm_GetItemParams@Base 6.1.20060507 + Nlm_GetItemStatus@Base 6.1.20060507 + Nlm_GetItemTitle@Base 6.1.20060507 + Nlm_GetLayerStatus3D@Base 6.1.20060507 + Nlm_GetLayerTop3D@Base 6.1.20060507 + Nlm_GetListItem@Base 6.1.20060507 + Nlm_GetNext@Base 6.1.20060507 + Nlm_GetNextItem@Base 6.1.20060507 + Nlm_GetNextPosition@Base 6.1.20060507 + Nlm_GetObject@Base 6.1.20060507 + Nlm_GetObjectExtra@Base 6.1.20060507 + Nlm_GetOffset@Base 6.1.20060507 + Nlm_GetOffsetX@Base 6.1.20060507 + Nlm_GetOffsetY@Base 6.1.20060507 + Nlm_GetOutputFileName@Base 6.1.20060507 + Nlm_GetPanelExtra@Base 6.1.20060507 + Nlm_GetParent@Base 6.1.20060507 + Nlm_GetParentWindow@Base 6.1.20060507 + Nlm_GetPen@Base 6.1.20060507 + Nlm_GetPosition@Base 6.1.20060507 + Nlm_GetPrimDrawAttribute@Base 6.1.20060507 + Nlm_GetPrimHligh@Base 6.1.20060507 + Nlm_GetPrimInfo3D@Base 6.1.20060507 + Nlm_GetPrimitive@Base 6.1.20060507 + Nlm_GetPrimitiveIDs@Base 6.1.20060507 + Nlm_GetRealized@Base 6.1.20060507 + Nlm_GetRect@Base 6.1.20060507 + Nlm_GetResidentFont@Base 6.1.20060507 + Nlm_GetScaleX@Base 6.1.20060507 + Nlm_GetScaleY@Base 6.1.20060507 + Nlm_GetScrlParams4@Base 6.1.20060507 + Nlm_GetScrlParams@Base 6.1.20060507 + Nlm_GetScrollTextOffset4@Base 6.1.20061015 + Nlm_GetSegBox3D@Base 6.1.20060507 + Nlm_GetSegSphere3D@Base 6.1.20060507 + Nlm_GetSegmentInfo3D@Base 6.1.20060507 + Nlm_GetSlateHScrollBar@Base 6.1.20060507 + Nlm_GetSlateVScrollBar@Base 6.1.20060507 + Nlm_GetStatus@Base 6.1.20060507 + Nlm_GetString@Base 6.1.20060507 + Nlm_GetSwitchMax@Base 6.1.20060507 + Nlm_GetTextCursorPos@Base 6.1.20060507 + Nlm_GetTitle@Base 6.1.20060507 + Nlm_GetValue@Base 6.1.20060507 + Nlm_GetViewerData@Base 6.1.20060507 + Nlm_GetViewerImage3D@Base 6.1.20060507 + Nlm_GetViewerInfo3D@Base 6.1.20060507 + Nlm_GetVisible@Base 6.1.20060507 + Nlm_GetVnpFromText@Base 6.1.20060507 + Nlm_GetWindowCharDisplay@Base 6.1.20060507 + Nlm_GetWindowDefaultButton@Base 6.1.20060507 + Nlm_GetWindowExtra@Base 6.1.20060507 + Nlm_GetWindowMenuBar@Base 6.1.20060507 + Nlm_GetWindowShell@Base 6.1.20060507 + Nlm_GetWorldWindow@Base 6.1.20060507 + Nlm_GlobalToLocal@Base 6.1.20060507 + Nlm_Gothic@Base 6.1.20060507 + Nlm_GothicFixed@Base 6.1.20060507 + Nlm_Gray@Base 6.1.20060507 + Nlm_Green@Base 6.1.20060507 + Nlm_HasAquaMenuLayout@Base 6.1.20060507 + Nlm_HasDualScreen@Base 6.1.20060507 + Nlm_Helvetica@Base 6.1.20060507 + Nlm_HiddenGroup@Base 6.1.20060507 + Nlm_HiddenSlate@Base 6.1.20060507 + Nlm_HiddenText@Base 6.1.20060507 + Nlm_Hide@Base 6.1.20060507 + Nlm_HideSegment@Base 6.1.20060507 + Nlm_HighlightPrim3D@Base 6.1.20060507 + Nlm_HighlightPrimitive@Base 6.1.20060507 + Nlm_HighlightSeg3D@Base 6.1.20060507 + Nlm_HighlightSegment@Base 6.1.20060507 + Nlm_HorizScrollBar4@Base 6.1.20060507 + Nlm_HorizScrollBar@Base 6.1.20060507 + Nlm_IBeamCursor@Base 6.1.20060507 + Nlm_IconButton@Base 6.1.20060507 + Nlm_IconicWindow@Base 6.1.20060507 + Nlm_IconifyWindow@Base 6.1.20060507 + Nlm_ImageGetBlack@Base 6.1.20060507 + Nlm_ImageGetColorMax@Base 6.1.20060507 + Nlm_ImageGetColorOffset@Base 6.1.20060507 + Nlm_ImageModified@Base 6.1.20060507 + Nlm_ImageSetPalette@Base 6.1.20060507 + Nlm_ImageShow@Base 6.1.20060507 + Nlm_ImportDialog@Base 6.1.20060507 + Nlm_ImportForm@Base 6.1.20060507 + Nlm_InFront@Base 6.1.20060507 + Nlm_InWindow@Base 6.1.20060507 + Nlm_InitBars@Base 6.1.20060507 + Nlm_InitButtons@Base 6.1.20060507 + Nlm_InitCursorShapes@Base 6.1.20060507 + Nlm_InitEnumPopup@Base 6.1.20060507 + Nlm_InitExtras@Base 6.1.20060507 + Nlm_InitForms@Base 6.1.20060507 + Nlm_InitGroup@Base 6.1.20060507 + Nlm_InitLists@Base 6.1.20060507 + Nlm_InitMenus@Base 6.1.20060507 + Nlm_InitPrompt@Base 6.1.20060507 + Nlm_InitSlate@Base 6.1.20060507 + Nlm_InitTexts@Base 6.1.20060507 + Nlm_InitVibrantHooks@Base 6.1.20060507 + Nlm_InitWindows@Base 6.1.20060507 + Nlm_InsertItem@Base 6.1.20060507 + Nlm_InsertText@Base 6.1.20060507 + Nlm_InsetRect@Base 6.1.20060507 + Nlm_IntToStr@Base 6.1.20060507 + Nlm_InvalDocCols@Base 6.1.20060507 + Nlm_InvalDocRows@Base 6.1.20060507 + Nlm_InvalDocument@Base 6.1.20060507 + Nlm_InvalObject@Base 6.1.20060507 + Nlm_InvalRect@Base 6.1.20060507 + Nlm_InvalRgn@Base 6.1.20060507 + Nlm_InvertArc@Base 6.1.20060507 + Nlm_InvertColors@Base 6.1.20060507 + Nlm_InvertMode@Base 6.1.20060507 + Nlm_InvertOval@Base 6.1.20060507 + Nlm_InvertPoly@Base 6.1.20060507 + Nlm_InvertQuadrant@Base 6.1.20060507 + Nlm_InvertRect@Base 6.1.20060507 + Nlm_InvertRgn@Base 6.1.20060507 + Nlm_InvertRoundRect@Base 6.1.20060507 + Nlm_IsLineInVPort@Base 6.1.20060507 + Nlm_IsPlaying3D@Base 6.1.20060507 + Nlm_IsPrim3DHlighted@Base 6.1.20060507 + Nlm_IsRemoteDesktop@Base 6.1.20110713 + Nlm_IsSeg3DHlighted@Base 6.1.20060507 + Nlm_IsWindowDying@Base 6.1.20060507 + Nlm_IsWindowModal@Base 6.1.20060507 + Nlm_Isqrt@Base 6.1.20060507 + Nlm_ItemIsVisible@Base 6.1.20060507 + Nlm_JustInvalObject@Base 6.1.20060507 + Nlm_JustSaveStringFromText@Base 6.1.20070822 + Nlm_KeyboardView@Base 6.1.20060507 + Nlm_KillSlateTimer@Base 6.1.20060507 + Nlm_LaunchApp@Base 6.1.20060507 + Nlm_LaunchAppEx@Base 6.1.20060507 + Nlm_Leading@Base 6.1.20060507 + Nlm_LeftRightSwitch@Base 6.1.20060507 + Nlm_Light@Base 6.1.20060507 + Nlm_LineHeight@Base 6.1.20060507 + Nlm_LineIntoVPort@Base 6.1.20060507 + Nlm_LineTo@Base 6.1.20060507 + Nlm_LinkControls3D@Base 6.1.20060507 + Nlm_LinkIn@Base 6.1.20060507 + Nlm_LinkSegment@Base 6.1.20060507 + Nlm_ListItem@Base 6.1.20060507 + Nlm_LoadAction@Base 6.1.20060507 + Nlm_LoadBox@Base 6.1.20060507 + Nlm_LoadBoxData@Base 6.1.20060507 + Nlm_LoadGraphicData@Base 6.1.20060507 + Nlm_LoadImageBMP@Base 6.1.20060507 + Nlm_LoadImageClip@Base 6.1.20060507 + Nlm_LoadImageGIF@Base 6.1.20060507 + Nlm_LoadPt@Base 6.1.20060507 + Nlm_LoadRect@Base 6.1.20060507 + Nlm_LoadRectRgn@Base 6.1.20060507 + Nlm_LocalToGlobal@Base 6.1.20060507 + Nlm_LockPixMapImage@Base 6.1.20060507 + Nlm_LongToStr@Base 6.1.20060507 + Nlm_LtGray@Base 6.1.20060507 + Nlm_MAToViewer3D@Base 6.1.20060507 + Nlm_Magenta@Base 6.1.20060507 + Nlm_MakeEnumFieldAlistFromValNodeList@Base 6.1.20060507 + Nlm_MapDefaultButton@Base 6.1.20060507 + Nlm_MapDocPoint@Base 6.1.20060507 + Nlm_MapDocPointEx@Base 6.1.20080302 + Nlm_MapPixelPointToWorld@Base 6.1.20060507 + Nlm_MapRectToWorldBox@Base 6.1.20060507 + Nlm_MapViewerToWorld@Base 6.1.20060507 + Nlm_MapWorldBoxToRect@Base 6.1.20060507 + Nlm_MapWorldPointToPixel@Base 6.1.20060507 + Nlm_MapWorldToViewer3D@Base 6.1.20060507 + Nlm_MapWorldToViewer@Base 6.1.20060507 + Nlm_MaxAlistWidths@Base 6.1.20060507 + Nlm_MaxCharWidth@Base 6.1.20060507 + Nlm_MaxStringWidths@Base 6.1.20060507 + Nlm_Medium@Base 6.1.20060507 + Nlm_MergeMode@Base 6.1.20060507 + Nlm_Metronome@Base 6.1.20060507 + Nlm_Minchou@Base 6.1.20060507 + Nlm_MinchouFixed@Base 6.1.20060507 + Nlm_ModalWindow@Base 6.1.20060507 + Nlm_MouseButton@Base 6.1.20060507 + Nlm_MousePosition@Base 6.1.20060507 + Nlm_MovableModalWindow@Base 6.1.20060507 + Nlm_MoveTo@Base 6.1.20060507 + Nlm_MultiLinePrompt@Base 6.1.20060507 + Nlm_MultiLinePromptEx@Base 6.1.20060507 + Nlm_MultiList@Base 6.1.20060507 + Nlm_NextLayer3D@Base 6.1.20060507 + Nlm_NextPosition@Base 6.1.20060507 + Nlm_NormalDisplay@Base 6.1.20060507 + Nlm_NormalGroup@Base 6.1.20060507 + Nlm_NormalSlate@Base 6.1.20060507 + Nlm_NormalizeBox@Base 6.1.20060507 + Nlm_ObjectRect@Base 6.1.20060507 + Nlm_OffsetPrim@Base 6.1.20060507 + Nlm_OffsetRect@Base 6.1.20060507 + Nlm_OffsetRgn@Base 6.1.20060507 + Nlm_OffsetSegment@Base 6.1.20060507 + Nlm_OutsetBox@Base 6.1.20060507 + Nlm_OverrideStdTranslations@Base 6.1.20060507 + Nlm_PaintArc@Base 6.1.20060507 + Nlm_PaintChar@Base 6.1.20060507 + Nlm_PaintOval@Base 6.1.20060507 + Nlm_PaintPoly@Base 6.1.20060507 + Nlm_PaintQuadrant@Base 6.1.20060507 + Nlm_PaintRect@Base 6.1.20060507 + Nlm_PaintRgn@Base 6.1.20060507 + Nlm_PaintRoundRect@Base 6.1.20060507 + Nlm_PaintString@Base 6.1.20060507 + Nlm_PaintStringEx@Base 6.1.20060507 + Nlm_PaintText@Base 6.1.20060507 + Nlm_PanelToViewer3D@Base 6.1.20060507 + Nlm_Parent@Base 6.1.20060507 + Nlm_ParentSegment@Base 6.1.20060507 + Nlm_ParentWindow@Base 6.1.20060507 + Nlm_ParentWindowMain@Base 6.1.20060507 + Nlm_ParentWindowPort@Base 6.1.20060507 + Nlm_ParentWindowPtr@Base 6.1.20060507 + Nlm_ParentWindowShell@Base 6.1.20060507 + Nlm_ParseFont@Base 6.1.20060507 + Nlm_ParseFontEx@Base 6.1.20060507 + Nlm_PassPanelClickToText@Base 6.1.20060507 + Nlm_PasswordText@Base 6.1.20060507 + Nlm_PasteText@Base 6.1.20060507 + Nlm_PictureGrew@Base 6.1.20060507 + Nlm_PictureHasEnlarged@Base 6.1.20060507 + Nlm_PlainWindow@Base 6.1.20060507 + Nlm_PlayLayer3D@Base 6.1.20060507 + Nlm_PlusCursor@Base 6.1.20060507 + Nlm_PoinTToPointTool@Base 6.1.20060507 + Nlm_PointToolToPoinT@Base 6.1.20060507 + Nlm_PointerToDialog@Base 6.1.20060507 + Nlm_PointerToForm@Base 6.1.20060507 + Nlm_PopupItem@Base 6.1.20060507 + Nlm_PopupItems@Base 6.1.20060507 + Nlm_PopupList@Base 6.1.20060507 + Nlm_PopupListEx@Base 6.1.20170106 + Nlm_PopupMenu@Base 6.1.20060507 + Nlm_PopupParentWindow@Base 6.1.20060507 + Nlm_PrevLayer3D@Base 6.1.20060507 + Nlm_PrimitiveBox@Base 6.1.20060507 + Nlm_PrimitiveIsCloseToPoint@Base 6.1.20060507 + Nlm_PrintAllViewer@Base 6.1.20060507 + Nlm_PrintDocument@Base 6.1.20060507 + Nlm_PrintImage@Base 6.1.20060507 + Nlm_PrintViewer@Base 6.1.20060507 + Nlm_PrintingRect@Base 6.1.20060507 + Nlm_ProcessAnEvent@Base 6.1.20060507 + Nlm_ProcessEventOrIdle@Base 6.1.20060507 + Nlm_ProcessEvents@Base 6.1.20060507 + Nlm_ProcessExternalEvent@Base 6.1.20060507 + Nlm_ProcessTimerEvent@Base 6.1.20060507 + Nlm_ProcessUpdatesFirst@Base 6.1.20060507 + Nlm_PtInRect@Base 6.1.20060507 + Nlm_PtInRgn@Base 6.1.20060507 + Nlm_PtrToStr@Base 6.1.20060507 + Nlm_PulldownMenu@Base 6.1.20060507 + Nlm_PushButton@Base 6.1.20060507 + Nlm_PushButtonEx@Base 6.1.20170106 + Nlm_QuitProgram@Base 6.1.20060507 + Nlm_QuittingProgram@Base 6.1.20060507 + Nlm_RadioButton@Base 6.1.20060507 + Nlm_RadioButtonEx@Base 6.1.20170106 + Nlm_ReadCard@Base 6.1.20060507 + Nlm_ReadChar@Base 6.1.20060507 + Nlm_ReadDouble@Base 6.1.20060507 + Nlm_ReadField@Base 6.1.20060507 + Nlm_ReadInt@Base 6.1.20060507 + Nlm_ReadLine@Base 6.1.20060507 + Nlm_ReadLong@Base 6.1.20060507 + Nlm_ReadReal@Base 6.1.20060507 + Nlm_ReadString@Base 6.1.20060507 + Nlm_ReadText@Base 6.1.20060507 + Nlm_RealToStr@Base 6.1.20060507 + Nlm_RealizeWindow@Base 6.1.20060507 + Nlm_RecTToRectTool@Base 6.1.20060507 + Nlm_RecalculateSegment@Base 6.1.20060507 + Nlm_RecordRect@Base 6.1.20060507 + Nlm_RectInRect@Base 6.1.20060507 + Nlm_RectInRgn@Base 6.1.20060507 + Nlm_RectToolToRecT@Base 6.1.20060507 + Nlm_Red@Base 6.1.20060507 + Nlm_RedrawViewer3D@Base 6.1.20060507 + Nlm_RegisterColumn@Base 6.1.20060507 + Nlm_RegisterDropProc@Base 6.1.20060507 + Nlm_RegisterFormMenuItemName@Base 6.1.20060507 + Nlm_RegisterIO@Base 6.1.20060507 + Nlm_RegisterRect@Base 6.1.20060507 + Nlm_RegisterResultProc@Base 6.1.20060507 + Nlm_RegisterRow@Base 6.1.20060507 + Nlm_RegisterServiceProc@Base 6.1.20060507 + Nlm_RegisterSlates@Base 6.1.20060507 + Nlm_RegisterStdTranslations@Base 6.1.20060507 + Nlm_RegisterTexts@Base 6.1.20060507 + Nlm_RegisterWindows@Base 6.1.20060507 + Nlm_ReleaseFolderTabButtons@Base 6.1.20120620 + Nlm_Remove@Base 6.1.20060507 + Nlm_RemoveDyingWindows@Base 6.1.20060507 + Nlm_RemoveLink@Base 6.1.20060507 + Nlm_RepeatButton@Base 6.1.20060507 + Nlm_RepeatProcOnHandles@Base 6.1.20060507 + Nlm_ReplaceItem@Base 6.1.20060507 + Nlm_ReplaceText@Base 6.1.20060507 + Nlm_Reset@Base 6.1.20060507 + Nlm_ResetClip@Base 6.1.20060507 + Nlm_ResetDrawingTools@Base 6.1.20060507 + Nlm_ResetHighlight3D@Base 6.1.20060507 + Nlm_ResetHighlight@Base 6.1.20060507 + Nlm_ResetPicture3D@Base 6.1.20060507 + Nlm_ResetSegment@Base 6.1.20060507 + Nlm_ResetViewer@Base 6.1.20060507 + Nlm_ResizableModalWindow@Base 6.1.20170106 + Nlm_RestorePort@Base 6.1.20060507 + Nlm_RestorePrimAttribute@Base 6.1.20060507 + Nlm_RestrictMotifColorsTo@Base 6.1.20060507 + Nlm_RoundWindow@Base 6.1.20060507 + Nlm_RowIsVisible@Base 6.1.20060507 + Nlm_SafeDisable@Base 6.1.20060507 + Nlm_SafeEnable@Base 6.1.20060507 + Nlm_SafeHide@Base 6.1.20060507 + Nlm_SafeSetStatus@Base 6.1.20060507 + Nlm_SafeSetTitle@Base 6.1.20060507 + Nlm_SafeSetValue@Base 6.1.20060507 + Nlm_SafeShow@Base 6.1.20060507 + Nlm_SaveDocument@Base 6.1.20060507 + Nlm_SaveDocumentItem@Base 6.1.20060507 + Nlm_SaveGIF@Base 6.1.20060507 + Nlm_SaveImageBMP@Base 6.1.20060507 + Nlm_SaveImageClip@Base 6.1.20060507 + Nlm_SaveImageGIF@Base 6.1.20060507 + Nlm_SaveImagePNG@Base 6.1.20060507 + Nlm_SavePort@Base 6.1.20060507 + Nlm_SavePortIfNeeded@Base 6.1.20060507 + Nlm_SaveStringFromText@Base 6.1.20060507 + Nlm_SaveViewer3D@Base 6.1.20060507 + Nlm_Scroll@Base 6.1.20060507 + Nlm_ScrollBar4@Base 6.1.20060507 + Nlm_ScrollBar@Base 6.1.20060507 + Nlm_ScrollDisplay@Base 6.1.20060507 + Nlm_ScrollRect@Base 6.1.20060507 + Nlm_ScrollSlate@Base 6.1.20060507 + Nlm_ScrollText@Base 6.1.20060507 + Nlm_SearchSegment@Base 6.1.20060507 + Nlm_SectRect@Base 6.1.20060507 + Nlm_SectRgn@Base 6.1.20060507 + Nlm_SegmentBox@Base 6.1.20060507 + Nlm_SegmentID@Base 6.1.20060507 + Nlm_SegmentStyle@Base 6.1.20060507 + Nlm_SegmentVisible@Base 6.1.20060507 + Nlm_Select@Base 6.1.20060507 + Nlm_SelectColor@Base 6.1.20060507 + Nlm_SelectFont@Base 6.1.20060507 + Nlm_SelectText@Base 6.1.20060507 + Nlm_SendMessageToDialog@Base 6.1.20060507 + Nlm_SendMessageToForm@Base 6.1.20060507 + Nlm_SeparatorItem@Base 6.1.20060507 + Nlm_Set3DColorMap@Base 6.1.20060507 + Nlm_SetAction@Base 6.1.20060507 + Nlm_SetActivate@Base 6.1.20060507 + Nlm_SetAdjust3D@Base 6.1.20060507 + Nlm_SetBackground3D@Base 6.1.20060507 + Nlm_SetBarAnomaly@Base 6.1.20060507 + Nlm_SetBarMax@Base 6.1.20060507 + Nlm_SetBarValue@Base 6.1.20060507 + Nlm_SetBoxData@Base 6.1.20060507 + Nlm_SetButtonAction@Base 6.1.20160908 + Nlm_SetButtonDefault@Base 6.1.20060507 + Nlm_SetChild@Base 6.1.20060507 + Nlm_SetClose@Base 6.1.20060507 + Nlm_SetColor3D@Base 6.1.20060507 + Nlm_SetColor@Base 6.1.20060507 + Nlm_SetColorCell@Base 6.1.20060507 + Nlm_SetColorEx@Base 6.1.20060507 + Nlm_SetColorImage@Base 6.1.20060507 + Nlm_SetColorMap@Base 6.1.20060507 + Nlm_SetCurrentGIF@Base 6.1.20060507 + Nlm_SetCursorShape@Base 6.1.20060507 + Nlm_SetDeactivate@Base 6.1.20060507 + Nlm_SetDefArrowSize@Base 6.1.20060507 + Nlm_SetDialogActnProc@Base 6.1.20090301 + Nlm_SetDocAutoAdjust@Base 6.1.20060507 + Nlm_SetDocCache@Base 6.1.20060507 + Nlm_SetDocData@Base 6.1.20060507 + Nlm_SetDocDefaults@Base 6.1.20060507 + Nlm_SetDocExtra@Base 6.1.20060507 + Nlm_SetDocHighlight@Base 6.1.20060507 + Nlm_SetDocNotify@Base 6.1.20060507 + Nlm_SetDocProcs@Base 6.1.20060507 + Nlm_SetDocShade@Base 6.1.20060507 + Nlm_SetDocSimpleMode@Base 6.1.20060507 + Nlm_SetDocTabstops@Base 6.1.20060507 + Nlm_SetEnabled@Base 6.1.20060507 + Nlm_SetEnumPopup@Base 6.1.20060507 + Nlm_SetEnumPopupByName@Base 6.1.20060507 + Nlm_SetExtraData@Base 6.1.20060507 + Nlm_SetFolderTabButton@Base 6.1.20120620 + Nlm_SetFolderTabSubclass@Base 6.1.20060507 + Nlm_SetFolderTabTitle@Base 6.1.20120620 + Nlm_SetFolderTabValue@Base 6.1.20060507 + Nlm_SetFormActnProc@Base 6.1.20060507 + Nlm_SetFormMenuItem@Base 6.1.20060507 + Nlm_SetGraphicData@Base 6.1.20060507 + Nlm_SetGroupMargins@Base 6.1.20060507 + Nlm_SetGroupSpacing@Base 6.1.20060507 + Nlm_SetHLColor3D@Base 6.1.20060507 + Nlm_SetItemStatus@Base 6.1.20060507 + Nlm_SetItemTitle@Base 6.1.20060507 + Nlm_SetKeepCrNlTextFieldCallback@Base 6.1.20060507 + Nlm_SetLargeFont@Base 6.1.20060507 + Nlm_SetLayer3D@Base 6.1.20060507 + Nlm_SetLayerTop3D@Base 6.1.20060507 + Nlm_SetMediumFont@Base 6.1.20060507 + Nlm_SetMenuAction@Base 6.1.20160908 + Nlm_SetModalWindowOwner@Base 6.1.20060507 + Nlm_SetMotifWindowName@Base 6.1.20060507 + Nlm_SetMouseMoveCallback@Base 6.1.20060507 + Nlm_SetMouseMoveRegion@Base 6.1.20060507 + Nlm_SetNext@Base 6.1.20060507 + Nlm_SetNextPosition@Base 6.1.20060507 + Nlm_SetOGLContext@Base 6.1.20060507 + Nlm_SetObject@Base 6.1.20060507 + Nlm_SetObjectExtra@Base 6.1.20060507 + Nlm_SetOffset@Base 6.1.20060507 + Nlm_SetPanelClick@Base 6.1.20060507 + Nlm_SetPanelExtra@Base 6.1.20060507 + Nlm_SetParent@Base 6.1.20060507 + Nlm_SetPen@Base 6.1.20060507 + Nlm_SetPenDash@Base 6.1.20060507 + Nlm_SetPenPattern@Base 6.1.20060507 + Nlm_SetPenWidth@Base 6.1.20080302 + Nlm_SetPosition3D@Base 6.1.20060507 + Nlm_SetPosition@Base 6.1.20060507 + Nlm_SetPrimAttribute@Base 6.1.20060507 + Nlm_SetPrimitiveIDs@Base 6.1.20060507 + Nlm_SetRange@Base 6.1.20060507 + Nlm_SetRealized@Base 6.1.20060507 + Nlm_SetRect@Base 6.1.20060507 + Nlm_SetResize@Base 6.1.20060507 + Nlm_SetScrlParams4@Base 6.1.20061015 + Nlm_SetScrollTextOffset4@Base 6.1.20061015 + Nlm_SetSegmentVisibleFlag@Base 6.1.20060507 + Nlm_SetSlateBorder@Base 6.1.20060507 + Nlm_SetSlateChar@Base 6.1.20060507 + Nlm_SetSlatePolicy@Base 6.1.20060507 + Nlm_SetSmallFont@Base 6.1.20060507 + Nlm_SetStatus@Base 6.1.20060507 + Nlm_SetStdMouse3D@Base 6.1.20060507 + Nlm_SetString@Base 6.1.20060507 + Nlm_SetSwitchMax@Base 6.1.20060507 + Nlm_SetSwitchParams@Base 6.1.20060507 + Nlm_SetTextColor@Base 6.1.20060507 + Nlm_SetTextCursorBlinkRate@Base 6.1.20060507 + Nlm_SetTextCursorPos@Base 6.1.20060507 + Nlm_SetTextEditable@Base 6.1.20060507 + Nlm_SetTextFromVnp@Base 6.1.20060507 + Nlm_SetTextSelect@Base 6.1.20060507 + Nlm_SetTitle@Base 6.1.20060507 + Nlm_SetUpDrawingTools@Base 6.1.20060507 + Nlm_SetValue@Base 6.1.20060507 + Nlm_SetViewerData@Base 6.1.20060507 + Nlm_SetViewerProcs@Base 6.1.20060507 + Nlm_SetVisible@Base 6.1.20060507 + Nlm_SetWindowCharDisplay@Base 6.1.20060507 + Nlm_SetWindowConfigureCallback@Base 6.1.20060507 + Nlm_SetWindowDefaultButton@Base 6.1.20060507 + Nlm_SetWindowExtra@Base 6.1.20060507 + Nlm_SetWindowMenuBar@Base 6.1.20060507 + Nlm_SetWindowTimer@Base 6.1.20060507 + Nlm_ShadowWindow@Base 6.1.20060507 + Nlm_Show@Base 6.1.20060507 + Nlm_ShowSegment@Base 6.1.20060507 + Nlm_SimplePanel@Base 6.1.20060507 + Nlm_SingleList@Base 6.1.20060507 + Nlm_Solid@Base 6.1.20060507 + Nlm_SortEnumFieldAlist@Base 6.1.20060507 + Nlm_SpecialText@Base 6.1.20060507 + Nlm_SpecialTextWithFont@Base 6.1.20120620 + Nlm_StartPage@Base 6.1.20060507 + Nlm_StartPicture@Base 6.1.20060507 + Nlm_StartPlaying3D@Base 6.1.20060507 + Nlm_StartPrinting@Base 6.1.20060507 + Nlm_StaticPrompt@Base 6.1.20060507 + Nlm_StatusItem@Base 6.1.20060507 + Nlm_StdAcceptFormButtonProc@Base 6.1.20060507 + Nlm_StdCancelButtonProc@Base 6.1.20060507 + Nlm_StdCleanupExtraProc@Base 6.1.20060507 + Nlm_StdCleanupFormProc@Base 6.1.20060507 + Nlm_StdCloseWindowProc@Base 6.1.20060507 + Nlm_StdCopyTextProc@Base 6.1.20060507 + Nlm_StdCutTextProc@Base 6.1.20060507 + Nlm_StdDeleteTextProc@Base 6.1.20060507 + Nlm_StdGetDocCache@Base 6.1.20060507 + Nlm_StdPasteTextProc@Base 6.1.20060507 + Nlm_StdPutDocCache@Base 6.1.20060507 + Nlm_StdResetDocCache@Base 6.1.20060507 + Nlm_StdSendAcceptButtonMessageProc@Base 6.1.20060507 + Nlm_StdSendCancelButtonMessageProc@Base 6.1.20060507 + Nlm_StdSendCloseWindowMessageProc@Base 6.1.20060507 + Nlm_StopPlaying3D@Base 6.1.20060507 + Nlm_StrToCard@Base 6.1.20060507 + Nlm_StrToDouble@Base 6.1.20060507 + Nlm_StrToFontSpec@Base 6.1.20060507 + Nlm_StrToInt@Base 6.1.20060507 + Nlm_StrToLong@Base 6.1.20060507 + Nlm_StrToPtr@Base 6.1.20060507 + Nlm_StrToReal@Base 6.1.20060507 + Nlm_StringToClipboard@Base 6.1.20060507 + Nlm_StringWidth@Base 6.1.20060507 + Nlm_StrngCat@Base 6.1.20060507 + Nlm_StrngCmp@Base 6.1.20060507 + Nlm_StrngCpy@Base 6.1.20060507 + Nlm_StrngEql@Base 6.1.20060507 + Nlm_StrngLen@Base 6.1.20060507 + Nlm_StrngPos@Base 6.1.20060507 + Nlm_StrngPrintable@Base 6.1.20060507 + Nlm_StrngRep@Base 6.1.20060507 + Nlm_StrngSeg@Base 6.1.20060507 + Nlm_SubMenu@Base 6.1.20060507 + Nlm_SubPt@Base 6.1.20060507 + Nlm_SymblCmp@Base 6.1.20060507 + Nlm_Symbol@Base 6.1.20060507 + Nlm_TestDialog@Base 6.1.20060507 + Nlm_TestForm@Base 6.1.20060507 + Nlm_TextHasNoText@Base 6.1.20060507 + Nlm_TextLength@Base 6.1.20060507 + Nlm_TextSelectionRange@Base 6.1.20060507 + Nlm_TextWidth@Base 6.1.20060507 + Nlm_Times@Base 6.1.20060507 + Nlm_TryGetPrimitiveLimits@Base 6.1.20060507 + Nlm_TryHighlightPrimitive@Base 6.1.20060507 + Nlm_TryOffsetPrimitive@Base 6.1.20060507 + Nlm_UnionRect@Base 6.1.20060507 + Nlm_UnionRgn@Base 6.1.20060507 + Nlm_UnlinkSegment@Base 6.1.20060507 + Nlm_UnloadSegment@Base 6.1.20060507 + Nlm_UnlockPixMapImage@Base 6.1.20060507 + Nlm_UnregisterIO@Base 6.1.20060507 + Nlm_UpDownSwitch@Base 6.1.20060507 + Nlm_Update@Base 6.1.20060507 + Nlm_UpdateColFmt@Base 6.1.20060507 + Nlm_UpdateColorTable@Base 6.1.20060507 + Nlm_UpdateDocument@Base 6.1.20060507 + Nlm_UpdateGver@Base 6.1.20060507 + Nlm_UpsetRect@Base 6.1.20060507 + Nlm_UseFullScreen@Base 6.1.20060507 + Nlm_UseLeftScreen@Base 6.1.20060507 + Nlm_UsePrimaryMonitor@Base 6.1.20060507 + Nlm_UseRightScreen@Base 6.1.20060507 + Nlm_UseWindow@Base 6.1.20060507 + Nlm_UsingWindow@Base 6.1.20060507 + Nlm_ValidRect@Base 6.1.20060507 + Nlm_ValidRgn@Base 6.1.20060507 + Nlm_Version@Base 6.1.20060507 + Nlm_VertScrollBar4@Base 6.1.20060507 + Nlm_VertScrollBar@Base 6.1.20060507 + Nlm_VibMainFinale@Base 6.1.20070822 + Nlm_VibMainPrelude@Base 6.1.20070822 + Nlm_VibrantDefaultColormap@Base 6.1.20060507 + Nlm_VibrantDefaultDepth@Base 6.1.20060507 + Nlm_VibrantDefaultVisual@Base 6.1.20060507 + Nlm_VibrantIsGUI@Base 6.1.20060507 + Nlm_VibrantSetGUI@Base 6.1.20060507 + Nlm_ViewerBox@Base 6.1.20060507 + Nlm_ViewerWasResized@Base 6.1.20060507 + Nlm_VirtualSlate@Base 6.1.20060507 + Nlm_Visible@Base 6.1.20060507 + Nlm_WaitForXEvent@Base 6.1.20060507 + Nlm_WatchCursor@Base 6.1.20060507 + Nlm_WhereInEnumPopup@Base 6.1.20060507 + Nlm_WhichWindow@Base 6.1.20060507 + Nlm_White@Base 6.1.20060507 + Nlm_WidePen@Base 6.1.20060507 + Nlm_WidestAlist@Base 6.1.20060507 + Nlm_WidestString@Base 6.1.20060507 + Nlm_WindowFrameGroup@Base 6.1.20060507 + Nlm_WindowHasBeenShown@Base 6.1.20060507 + Nlm_WriteCard@Base 6.1.20060507 + Nlm_WriteChar@Base 6.1.20060507 + Nlm_WriteDouble@Base 6.1.20060507 + Nlm_WriteInt@Base 6.1.20060507 + Nlm_WriteLn@Base 6.1.20060507 + Nlm_WriteLog@Base 6.1.20060507 + Nlm_WriteLong@Base 6.1.20060507 + Nlm_WriteReal@Base 6.1.20060507 + Nlm_WriteString@Base 6.1.20060507 + Nlm_WriteText@Base 6.1.20060507 + Nlm_XAllocColor@Base 6.1.20060507 + Nlm_XLoadQueryFont@Base 6.1.20060507 + Nlm_XLoadStandardFont@Base 6.1.20060507 + Nlm_XOffset@Base 6.1.20060507 + Nlm_XSetForeground@Base 6.1.20060507 + Nlm_XbackColor@Base 6.1.20060507 + Nlm_XfontList@Base 6.1.20060507 + Nlm_XforeColor@Base 6.1.20060507 + Nlm_XorRgn@Base 6.1.20060507 + Nlm_XrmGetResource@Base 6.1.20060507 + Nlm_YOffset@Base 6.1.20060507 + Nlm_Yellow@Base 6.1.20060507 + Nlm_ZoomAll3D@Base 6.1.20060507 + Nlm_appContext@Base 6.1.20060507 + Nlm_clpRgn@Base 6.1.20060507 + Nlm_cmmdKey@Base 6.1.20060507 + Nlm_ctrlKey@Base 6.1.20060507 + Nlm_currentCursor@Base 6.1.20060507 + Nlm_currentEvent@Base 6.1.20060507 + Nlm_currentKey@Base 6.1.20060507 + Nlm_currentWindowTool@Base 6.1.20060507 + Nlm_currentXDisplay@Base 6.1.20060507 + Nlm_currentXGC@Base 6.1.20060507 + Nlm_currentXScreen@Base 6.1.20060507 + Nlm_currentXWindow@Base 6.1.20060507 + Nlm_dblClick@Base 6.1.20060507 + Nlm_desktopWindow@Base 6.1.20060507 + Nlm_dialogTextHeight@Base 6.1.20060507 + Nlm_fileDialogShell@Base 6.1.20060507 + Nlm_fileDone@Base 6.1.20060507 + Nlm_fileError@Base 6.1.20060507 + Nlm_folderTabProcs@Base 6.1.20060507 + Nlm_globalMouse@Base 6.1.20060507 + Nlm_hScrollBarHeight@Base 6.1.20060507 + Nlm_hasColor@Base 6.1.20060507 + Nlm_internalMenuBarHeight@Base 6.1.20060507 + Nlm_isPrimInWindow@Base 6.1.20060507 + Nlm_largeFont@Base 6.1.20060507 + Nlm_localMouse@Base 6.1.20060507 + Nlm_mediumFont@Base 6.1.20060507 + Nlm_nextIdNumber@Base 6.1.20060507 + Nlm_nowPrinting@Base 6.1.20060507 + Nlm_optKey@Base 6.1.20060507 + Nlm_popupMenuHeight@Base 6.1.20060507 + Nlm_processUpdatesFirstVal@Base 6.1.20060507 + Nlm_programFont@Base 6.1.20060507 + Nlm_screenRect@Base 6.1.20060507 + Nlm_shftKey@Base 6.1.20060507 + Nlm_smallFont@Base 6.1.20060507 + Nlm_stCon@Base 6.1.20060507 + Nlm_stdAscent@Base 6.1.20060507 + Nlm_stdCharWidth@Base 6.1.20060507 + Nlm_stdDescent@Base 6.1.20060507 + Nlm_stdFontHeight@Base 6.1.20060507 + Nlm_stdLeading@Base 6.1.20060507 + Nlm_stdLineHeight@Base 6.1.20060507 + Nlm_systemFont@Base 6.1.20060507 + Nlm_systemWindow@Base 6.1.20060507 + Nlm_termCH@Base 6.1.20060507 + Nlm_textScrapFull@Base 6.1.20060507 + Nlm_theWindow@Base 6.1.20060507 + Nlm_updateRect@Base 6.1.20060507 + Nlm_updateRgn@Base 6.1.20060507 + Nlm_usesMacNavServices@Base 6.1.20060507 + Nlm_vScrollBarWidth@Base 6.1.20060507 + OGL_AddBrick3D@Base 6.1.20060507 + OGL_AddCylinder3D@Base 6.1.20060507 + OGL_AddLine3D@Base 6.1.20060507 + OGL_AddQuad3D@Base 6.1.20060507 + OGL_AddSphere3D@Base 6.1.20060507 + OGL_AddText3D@Base 6.1.20060507 + OGL_AddTri3D@Base 6.1.20060507 + OGL_AllLayerOnProc@Base 6.1.20060507 + OGL_ClearBoundBox@Base 6.1.20060507 + OGL_ClearOGL_Data@Base 6.1.20060507 + OGL_ClearTransparentSpheres@Base 6.1.20060507 + OGL_CreateCTransform@Base 6.1.20060507 + OGL_CreateViewer@Base 6.1.20060507 + OGL_CrossProduct@Base 6.1.20060507 + OGL_DistCompareFunc@Base 6.1.20060507 + OGL_DrawLogo@Base 6.1.20060507 + OGL_DrawViewer3D@Base 6.1.20060507 + OGL_End@Base 6.1.20060507 + OGL_GetLayer@Base 6.1.20060507 + OGL_Hit@Base 6.1.20060507 + OGL_InitializeLists@Base 6.1.20060507 + OGL_IsPlaying@Base 6.1.20060507 + OGL_LoadName@Base 6.1.20060507 + OGL_MakeNormal@Base 6.1.20060507 + OGL_NextLayerProc@Base 6.1.20060507 + OGL_Normalize@Base 6.1.20060507 + OGL_Play@Base 6.1.20060507 + OGL_PopTransformation@Base 6.1.20060507 + OGL_PrevLayerProc@Base 6.1.20060507 + OGL_PushTransformation@Base 6.1.20060507 + OGL_Reset@Base 6.1.20060507 + OGL_RewindLayerProc@Base 6.1.20060507 + OGL_SearchPaletteIndex@Base 6.1.20060507 + OGL_Select@Base 6.1.20060507 + OGL_SetColor@Base 6.1.20060507 + OGL_SetLayer@Base 6.1.20060507 + OGL_SetLayerTop3D@Base 6.1.20060507 + OGL_SetLayers@Base 6.1.20060507 + OGL_SetPosition3D@Base 6.1.20060507 + OGL_SetSelectPoint@Base 6.1.20060507 + OGL_Start@Base 6.1.20060507 + OGL_StartPlaying@Base 6.1.20060507 + OGL_StopPlaying@Base 6.1.20060507 + OGL_XErrorHandler@Base 6.1.20060507 + OGL_ZoomIn@Base 6.1.20060507 + OGL_ZoomOut@Base 6.1.20060507 + OwnerDrawLbox_AddItem@Base 6.1.20060507 + OwnerDrawLbox_Create@Base 6.1.20060507 + OwnerDrawLbox_GetCurData@Base 6.1.20060507 + OwnerDrawLbox_GetCurSel@Base 6.1.20060507 + OwnerDrawLbox_GetData@Base 6.1.20060507 + OwnerDrawLbox_GetNentry@Base 6.1.20060507 + OwnerDrawLbox_MoveWindow@Base 6.1.20060507 + OwnerDrawLbox_ResetLBContent@Base 6.1.20060507 + OwnerDrawLbox_SelectItem@Base 6.1.20060507 + PaletteNumItems@Base 6.1.20060507 + PalettePanel@Base 6.1.20060507 + RED_COLOR@Base 6.1.20060507 + RecordColumn@Base 6.1.20060507 + ReplaceTagListColumn@Base 6.1.20060507 + SetOGLFont@Base 6.1.20060507 + SetPaletteValue@Base 6.1.20060507 + SetTableBlockGray@Base 6.1.20060507 + SetTableBlockHilight@Base 6.1.20060507 + SetTableGray@Base 6.1.20060507 + SetTableHilight@Base 6.1.20060507 + TableNumLines@Base 6.1.20060507 + TablePanel@Base 6.1.20060507 + TableTextLength@Base 6.1.20060507 + TableVisLines@Base 6.1.20060507 + UpdateTagListPopupChoices@Base 6.1.20060507 + VRML_AddCylinder3D@Base 6.1.20060507 + VRML_AddSphere3D@Base 6.1.20060507 + VRML_ColorToString@Base 6.1.20060507 + WHITE_COLOR@Base 6.1.20060507 + YELLOW_COLOR@Base 6.1.20060507 + blackAttPData@Base 6.1.20060507 + defFallbackRes@Base 6.1.20060507 + ilst_add@Base 6.1.20060507 + ilst_draw@Base 6.1.20060507 + ilst_free@Base 6.1.20060507 + ilst_new@Base 6.1.20060507 + ilst_remove@Base 6.1.20060507 + ilst_replace@Base 6.1.20060507 + ilst_size@Base 6.1.20060507 + main@Base 6.1.20060507 + okayToDrawContents@Base 6.1.20060507 + structControls3D@Base 6.1.20060507 + tview_closeSubtree@Base 6.1.20060507 + tview_create@Base 6.1.20060507 + tview_createCustom@Base 6.1.20060507 + tview_delete@Base 6.1.20060507 + tview_disable@Base 6.1.20060507 + tview_distanceCmp@Base 6.1.20060507 + tview_enable@Base 6.1.20060507 + tview_getSelected@Base 6.1.20060507 + tview_getTreePtr@Base 6.1.20060507 + tview_hide@Base 6.1.20060507 + tview_labelCmp@Base 6.1.20060507 + tview_moveRoot@Base 6.1.20060507 + tview_openSubtree@Base 6.1.20060507 + tview_redraw@Base 6.1.20060507 + tview_resize@Base 6.1.20060507 + tview_selectNode@Base 6.1.20060507 + tview_setCtrlClickFunc@Base 6.1.20060507 + tview_setDblClickFunc@Base 6.1.20060507 + tview_setEventHandler@Base 6.1.20060507 + tview_setLineColor@Base 6.1.20060507 + tview_setNodeCmpFunc@Base 6.1.20060507 + tview_setPlusColor@Base 6.1.20060507 + tview_setSelBGColor@Base 6.1.20060507 + tview_setSelFGColor@Base 6.1.20060507 + tview_setShiftClickFunc@Base 6.1.20060507 + tview_setTextColor@Base 6.1.20060507 + tview_show@Base 6.1.20060507 + tview_showSelected@Base 6.1.20060507 + whiteAttPData@Base 6.1.20060507 + write_row_callback@Base 6.1.20060507 diff --git a/debian/makemenu b/debian/makemenu new file mode 100644 index 00000000..8f8de0b6 --- /dev/null +++ b/debian/makemenu @@ -0,0 +1,66 @@ +#!/bin/sh +if [ "x$1" = "x-v" ]; then + vibrate=true + shift +else + vibrate=false +fi +package=`basename $1 .install` +if [ $vibrate = true ]; then + packages="libvibrant6b,$package" +else + packages=$package +fi +menu=`echo $1 | sed -e 's/install$/menu/'` +while read command junk; do + case $command in + */bin/*) ;; + * ) continue ;; + esac + case $package in + libncbi6-dev) section="Applications/Programming" ;; + * ) section="Applications/Science/Biology" ;; + esac + case $command in + # Doesn't use requisite argument-handling framework + */ncbisort) continue ;; + */Nentrez ) title=Entrez ;; + */Psequin ) title=Sequin ;; + */netentcf) title="Entrez net config" ;; + * ) title=`basename $command` ;; + esac + icondir=/usr/share/pixmaps + case $command in + */asntool) icon=$icondir/asntool.xpm ;; + *) icon=$icondir/ncbilogo.xpm ;; + esac + if [ $vibrate = true ]; then + command="usr/bin/vibrate /$command" + else + # generate an XDG .desktop file too + apps=debian/$package/usr/share/applications + base=`basename $command` + if test -f debian/$base.desktop.in; then + mkdir -p $apps + cat >$apps/$base.desktop <<EOF +[Desktop Entry] +Version=1.0 +EOF + cat debian/$base.desktop.in >> $apps/$base.desktop + cat >>$apps/$base.desktop <<EOF +Type=Application +Exec=$base +Icon=ncbilogo +Categories=Education;Science;Biology; +EOF + continue + else + echo "$0: Warning: No .desktop information for $base" >&2 + fi + fi + cat <<EOF +?package($packages):command="/$command" needs="X11" \\ + section="$section" title="$title" icon="$icon" +EOF +done < "$1" > "$menu" +[ -s "$menu" ] || rm $menu diff --git a/debian/man/Cn3D-3.0.1 b/debian/man/Cn3D-3.0.1 new file mode 100644 index 00000000..0eb59cd3 --- /dev/null +++ b/debian/man/Cn3D-3.0.1 @@ -0,0 +1,26 @@ +.TH CN3D 1 2001-10-05 NCBI "NCBI Tools User's Manual" +.SH NAME +Cn3D \- a 3-dimensional viewer for biological molecules +.SH SYNOPSIS +.B Cn3D +[\|\fIfilename\fP\|] +.SH DESCRIPTION +This manual page documents briefly the \fBCn3D\fP command. +This manual page was written for the Debian GNU/Linux distribution +because the original program does not have a manual page. +.PP +\fBCn3D\fP is a helper application for your web browser that allows +you to view 3-dimensional structures from NCBI's Entrez retrieval +service. +.SH OPTIONS +.TP +\fIfilename\fP +Initially display the data in \fIfilename\fP. +.SH AUTHOR +This manual page was written by Aaron M. Ucko <ucko@debian.org>, +for the Debian GNU/Linux system (but may be used by others). +.SH SEE ALSO +.ad l +.BR ddv (1), +.BR udv (1), +<http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml> diff --git a/debian/man/vibrate.1 b/debian/man/vibrate.1 new file mode 100644 index 00000000..3ee36dd7 --- /dev/null +++ b/debian/man/vibrate.1 @@ -0,0 +1,21 @@ +.TH VIBRATE 1 2001-10-05 Debian "NCBI Tools User's Manual" +.SH NAME +vibrate \- run a program with the Vibrant library preloaded +.SH SYNOPSIS +.B vibrate +[\|\fB\-\-help\fP\|] +.PP +.B vibrate +\fIprogram\fP +[\|\fIarguments\fP\|] +.SH DESCRIPTION +\fBvibrate\fP runs the specified program, which presumably uses the +NCBI C toolkit, with the Vibrant library preloaded. The main effect +of this preloading is that omitting arguments produces a dialog box +for setting parameters rather than a usage message. +.SH OPTIONS +.TP +\fB\-\-help\fP +Print usage message and exit. +.SH AUTHOR +Aaron M. Ucko <ucko@debian.org> diff --git a/debian/ncbi-cn3d.install b/debian/ncbi-cn3d.install new file mode 100644 index 00000000..e4ec6b9a --- /dev/null +++ b/debian/ncbi-cn3d.install @@ -0,0 +1 @@ +usr/bin/Cn3D-3.0 diff --git a/debian/ncbi-cn3d.mime b/debian/ncbi-cn3d.mime new file mode 100644 index 00000000..1ff8905a --- /dev/null +++ b/debian/ncbi-cn3d.mime @@ -0,0 +1,2 @@ +chemical/ncbi-asn1-binary; viewer=/usr/bin/Cn3D-3.0 %s; test=test -n "$DISPLAY" +chemical/ncbi-asn1-text; viewer=/usr/bin/Cn3D-3.0 %s; test=test -n "$DISPLAY" diff --git a/debian/ncbi-cn3d.postinst b/debian/ncbi-cn3d.postinst new file mode 100644 index 00000000..2080f0a6 --- /dev/null +++ b/debian/ncbi-cn3d.postinst @@ -0,0 +1,8 @@ +#!/bin/sh -e + +update-alternatives --install \ + /usr/bin/Cn3D Cn3D /usr/bin/Cn3D-3.0 30 \ + --slave /usr/share/man/man1/Cn3D.1.gz Cn3D.1.gz \ + /usr/share/man/man1/Cn3D-3.0.1.gz + +#DEBHELPER# diff --git a/debian/ncbi-cn3d.prerm b/debian/ncbi-cn3d.prerm new file mode 100644 index 00000000..935e1ff1 --- /dev/null +++ b/debian/ncbi-cn3d.prerm @@ -0,0 +1,5 @@ +#!/bin/sh -e + +update-alternatives --remove Cn3D /usr/bin/Cn3D-3.0 + +#DEBHELPER# diff --git a/debian/ncbi-tools-bin.docs b/debian/ncbi-tools-bin.docs new file mode 100644 index 00000000..4d41115e --- /dev/null +++ b/debian/ncbi-tools-bin.docs @@ -0,0 +1,8 @@ +doc/README.asn2xml +doc/gene2xml.txt +doc/tbl2asn.txt +debian/README.test +debian/tests/run-unit-test +debian/tests/test-data +asn/asnpub.all +demo/medline.prt diff --git a/debian/ncbi-tools-bin.examples b/debian/ncbi-tools-bin.examples new file mode 100644 index 00000000..e0b4dcdc --- /dev/null +++ b/debian/ncbi-tools-bin.examples @@ -0,0 +1,2 @@ +demo/*tbl*.?? +demo/rast*.sh diff --git a/debian/ncbi-tools-bin.install b/debian/ncbi-tools-bin.install new file mode 100644 index 00000000..ddf0d292 --- /dev/null +++ b/debian/ncbi-tools-bin.install @@ -0,0 +1,36 @@ +usr/bin/asn2all +usr/bin/asn2asn +usr/bin/asn2ff +usr/bin/asn2fsa +usr/bin/asn2gb +usr/bin/asn2idx +usr/bin/asn2xml +usr/bin/asndhuff +usr/bin/asndisc +usr/bin/asnmacro +usr/bin/asntool +usr/bin/asnval +usr/bin/checksub +usr/bin/cleanasn +usr/bin/debruijn +usr/bin/errhdr +usr/bin/fa2htgs +usr/bin/findspl +usr/bin/gbseqget +usr/bin/gene2xml +usr/bin/getmesh +usr/bin/getpub +usr/bin/gil2bin +usr/bin/idfetch +usr/bin/indexpub +usr/bin/insdseqget +usr/bin/makeset +usr/bin/nps2gps +usr/bin/sortbyquote +usr/bin/spidey +usr/bin/subfuse +usr/bin/taxblast +usr/bin/tbl2asn +usr/bin/trna2sap +usr/bin/trna2tbl +usr/bin/vecscreen diff --git a/debian/ncbi-tools-bin.lintian-overrides b/debian/ncbi-tools-bin.lintian-overrides new file mode 100644 index 00000000..05098179 --- /dev/null +++ b/debian/ncbi-tools-bin.lintian-overrides @@ -0,0 +1,2 @@ +ncbi-tools-bin: menu-icon-missing usr/share/pixmaps/asntool.xpm +ncbi-tools-bin: menu-icon-missing usr/share/pixmaps/ncbilogo.xpm diff --git a/debian/ncbi-tools-x11.doc-base.firewall b/debian/ncbi-tools-x11.doc-base.firewall new file mode 100644 index 00000000..a68c52ba --- /dev/null +++ b/debian/ncbi-tools-x11.doc-base.firewall @@ -0,0 +1,11 @@ +Document: ncbi-tools-firewall +Title: Connecting to Network Entrez through a firewall +Author: The National Center for Biotechnology Information +Abstract: Some NCBI applications may need to be explicitly configured + to access NCBI network resources. This document explains how to do + that, even when there is a firewall in between. +Section: System/Administration + +Format: HTML +Index: /usr/share/doc/ncbi-tools-x11/firewall.html +Files: /usr/share/doc/ncbi-tools-x11/fire* diff --git a/debian/ncbi-tools-x11.doc-base.sequin b/debian/ncbi-tools-x11.doc-base.sequin new file mode 100644 index 00000000..14ec8d84 --- /dev/null +++ b/debian/ncbi-tools-x11.doc-base.sequin @@ -0,0 +1,15 @@ +Document: sequin +Title: Sequin Quick Guide +Author: Jonathan Kans, Colombe Chappey, Jinghui Zhang, Tatiana + Tatusov, and James Ostell +Abstract: Sequin is a program designed to aid in the submission of + sequences to the GenBank, EMBL, and DDBJ sequence databases. It was + written at the National Center for Biotechnology Information, part of + the National Library of Medicine at the National Institutes of + Health. +Section: Science/Biology + +Format: HTML +Index: /usr/share/doc/ncbi-tools-x11/sequin.htm +Files: /usr/share/doc/ncbi-tools-x11/images/* + diff --git a/debian/ncbi-tools-x11.docs b/debian/ncbi-tools-x11.docs new file mode 100644 index 00000000..cc57cdab --- /dev/null +++ b/debian/ncbi-tools-x11.docs @@ -0,0 +1,5 @@ +debian/*.css +debian/*.gif +doc/fire* +doc/images +doc/sequin.htm diff --git a/debian/ncbi-tools-x11.install b/debian/ncbi-tools-x11.install new file mode 100644 index 00000000..9d10cf82 --- /dev/null +++ b/debian/ncbi-tools-x11.install @@ -0,0 +1,5 @@ +usr/bin/Psequin +usr/bin/ddv +usr/bin/entrez2 +usr/bin/sbtedit +usr/bin/udv diff --git a/debian/ncbi-tools-x11.links b/debian/ncbi-tools-x11.links new file mode 100644 index 00000000..7a75b3c9 --- /dev/null +++ b/debian/ncbi-tools-x11.links @@ -0,0 +1,2 @@ +usr/bin/entrez2 usr/bin/entrez +usr/bin/Psequin usr/bin/sequin diff --git a/debian/ncbi-tools-x11.lintian-overrides b/debian/ncbi-tools-x11.lintian-overrides new file mode 100644 index 00000000..fc3c844e --- /dev/null +++ b/debian/ncbi-tools-x11.lintian-overrides @@ -0,0 +1 @@ +ncbi-tools-x11: menu-icon-missing usr/share/pixmaps/ncbilogo.xpm diff --git a/debian/ncbi2.css b/debian/ncbi2.css new file mode 100644 index 00000000..5124169d --- /dev/null +++ b/debian/ncbi2.css @@ -0,0 +1,184 @@ +.TEXT { + font-size: 90%; + font-family: arial,helvetica,sans-serif; + } + +.TEXTWIDE { + font-size: 90%; + font-family: arial,helvetica,sans-serif; + } + +.medium1 { + font-size: 75%; + font-family: arial,helvetica,sans-serif; + } + +.medium2 { + font-size: 75%; + font-family: verdana; + } + +.medium3 { + font-size: 75%; + font-family: courier; + } + +.medium4 { + font-size: 75%; + font-family: arial,helvetica,sans-serif; + font-style: italic; + } + +.GUTTER1 { + font-size: 85%; + font-family: arial,helvetica,sans-serif; + color:#ffcc66; + } + +.GUTTER2 { + font-size: 75%; + font-family: arial,helvetica,sans-serif; + color:#ccccff; + } + +.GUTTER3 { + font-size: 75%; + font-family: arial,helvetica,sans-serif; + color:#ffffff; + text-decoration:none; + } + +A { + color:#0033CC; + } + +A.BOOK { + color:#085a29; + font-weight: bold; + } + +A.BAR { + font-size:85%; + color:#ffffff; + font-family: arial,helvetica,sans-serif; + text-decoration:none; + } + +A.HELPBAR { + color:#000000; + font-size: 75%; + font-family: arial,helvetica,sans-serif; + text-decoration:none; + } + +A.GUTTER { + color:#ffffff; + font-size: 85%; + font-family: arial,helvetica,sans-serif; + text-decoration:none; + } + +A.GUTTER1 { + color:#ffcc66; + font-size:85%; + font-family: arial,helvetica,sans-serif; + text-decoration:none; + } + +A.GUTTER2 { + font-size: 75%; + font-family: arial,helvetica,sans-serif; + color:#ccccff; + text-decoration:none; + } + +A.GUTTER3 { + font-size: 75%; + font-family: arial,helvetica,sans-serif; + color:#ffffff; + text-decoration:none; + } + +A.BUTTON { + font-size: 75%; + font-family: arial,helvetica,sans-serif; + color:#000000; + text-decoration:none; + } + +H1, .H1 { + font-size: 125%; + font-weight: bold; + font-family: arial,helvetica,sans-serif; + } + +H2, .H2 { + font-size: 125%; + font-weight: bold; + font-family: arial,helvetica,sans-serif; + } + +H3, .H3 { + font-size: 100%; + font-weight: bold; + font-family: arial,helvetica,sans-serif; + } + +H4, .H4 { + font-size: 100%; + font-weight: bold; + font-family: arial,helvetica,sans-serif; + } + +H5, .H5 { + font-size: 85%; + font-weight: bold; + font-style: italic; + font-family: arial,helvetica,sans-serif; + } + +.pmlinka { + font-family: arial,helvetica,sans-serif; + font-size:85%; + font-weight:bold; + color: #336699; + text-align:center; + vertical-align:baseline; + text-decoration:none; + } + +.pmlinkna { + font-family: arial,helvetica,sans-serif; + font-size:85%; + color: #336699; + text-align:center; + vertical-align:baseline; + text-decoration:none; + } + +.taba { + background:#FFFFFF; + text-align:center; + vertical-align:baseline; + } + +.tabna { + background:#CCCCCC; + text-align:center; + vertical-align:baseline; + } + +.dblinks { + font-size: 75%; + font-family: arial,helvetica,sans-serif; + color:#336699; + text-decoration:none; + } + +A.popmenu:link { text-decoration: none; font-family: Verdana, Arial, Sans-serif; font-size: 11px; color: Navy; } +A.popmenu:visited { text-decoration: none; font-family: Verdana, Arial, Sans-serif; font-size: 11px; color:#6C7F9A; } +A.popmenu:active { text-decoration: none; font-family: Verdana, Arial, Sans-serif; font-size: 11px; color:#001A4F; } +A.popmenu:hover { text-decoration: underline; color:#038000; font-family: Verdana, Arial, Sans-serif; font-size: 11px; } +.menutitle { font-family: Verdana, Arial, Sans-serif; font-size: 10px; font-weight: bold; } +.fixedsize_skobka { color:#000084; font-size:10px; font-family:Arial,sans-serif; } + diff --git a/debian/patches/debian-changes b/debian/patches/debian-changes new file mode 100644 index 00000000..3eb336f0 --- /dev/null +++ b/debian/patches/debian-changes @@ -0,0 +1,955 @@ +Combined patches from git. +--- /dev/null ++++ ncbi-tools6-6.1.20170106+dfsg1/.gitignore +@@ -0,0 +1,6 @@ ++bin ++build ++include ++lib ++shlib ++*-stamp +--- ncbi-tools6-6.1.20170106+dfsg1.orig/access/ent2api.c ++++ ncbi-tools6-6.1.20170106+dfsg1/access/ent2api.c +@@ -1273,7 +1273,7 @@ NLM_EXTERN CONN EntrezOpenConnection ( + *arg = '\0'; + + return QUERY_OpenServiceQueryEx +- (StringHasNoText (e2_service) ? "Entrez2" : e2_service, NULL, 30, arg); ++ (StringHasNoText (e2_service) ? "Entrez2s" : e2_service, NULL, 30, arg); + } + + #ifdef OS_MAC +--- ncbi-tools6-6.1.20170106+dfsg1.orig/api/sqnutil3.c ++++ ncbi-tools6-6.1.20170106+dfsg1/api/sqnutil3.c +@@ -33198,7 +33198,7 @@ ClickableItemPtr LIBCALL ClickableGlobal + cip->clickable_item_type = item_type; + cip->description + = (CharPtr) MemNew ( sizeof (Char) * (StringLen (fmt) + 15)); +- sprintf (cip->description, fmt); ++ strcpy (cip->description, fmt); + return cip; + } + return NULL; +--- ncbi-tools6-6.1.20170106+dfsg1.orig/connect/ncbi_gnutls.c ++++ ncbi-tools6-6.1.20170106+dfsg1/connect/ncbi_gnutls.c +@@ -585,6 +585,7 @@ static EIO_Status s_GnuTlsInit(FSSLPull + + assert(!s_GnuTlsCredAnon); + ++#if 0 + version = gnutls_check_version(0); + if (strcasecmp(GNUTLS_VERSION, version) != 0) { + CORE_LOGF(eLOG_Critical, +@@ -592,6 +593,7 @@ static EIO_Status s_GnuTlsInit(FSSLPull + GNUTLS_VERSION, version)); + assert(0); + } ++#endif + + val = ConnNetInfo_GetValue(0, "GNUTLS_LOGLEVEL", buf, sizeof(buf), 0); + CORE_LOCK_READ; +--- ncbi-tools6-6.1.20170106+dfsg1.orig/connect/ncbi_http_connector.c ++++ ncbi-tools6-6.1.20170106+dfsg1/connect/ncbi_http_connector.c +@@ -240,8 +240,14 @@ static int/*bool*/ x_UnsafeRedirectOK(SH + if (uuu->unsafe_redir == eDefault) { + if (!(uuu->flags & fHTTP_UnsafeRedirects)) { + char val[32]; ++ const char* dflt = NULL; ++ if (uuu->net_info->scheme == eURL_Https ++ && (strspn(uuu->net_info->host, "0123456789.") ++ == strlen(uuu->net_info->host))) { ++ dflt = "TRUE"; ++ } + ConnNetInfo_GetValue(0, "HTTP_UNSAFE_REDIRECTS", +- val, sizeof(val), 0); ++ val, sizeof(val), dflt); + uuu->unsafe_redir = ConnNetInfo_Boolean(val) ? eOn : eOff; + } else + uuu->unsafe_redir = eOn; +--- ncbi-tools6-6.1.20170106+dfsg1.orig/connect/ncbi_util.c ++++ ncbi-tools6-6.1.20170106+dfsg1/connect/ncbi_util.c +@@ -49,7 +49,9 @@ + # ifndef NCBI_OS_SOLARIS + # include <limits.h> + # endif /*!NCBI_OS_SOLARIS*/ +-# ifdef NCBI_OS_LINUX ++# ifdef __MACH__ ++# include <mach/vm_param.h> ++# elif defined(NCBI_OS_LINUX) + # include <sys/user.h> + # endif /*NCBI_OS_LINUX*/ + # include <pwd.h> +--- ncbi-tools6-6.1.20170106+dfsg1.orig/connect/urlquery.c ++++ ncbi-tools6-6.1.20170106+dfsg1/connect/urlquery.c +@@ -128,7 +128,10 @@ NLM_EXTERN CONN QUERY_OpenUrlQuery ( + } + if ( host_port ) { + net_info->port = host_port; ++ } else { ++ net_info->scheme = eURL_Https; + } ++ + StringNCpy_0 (net_info->path, host_path, sizeof (net_info->path)); + if (StringDoesHaveText (arguments)) { + StringNCpy_0 (net_info->args, arguments, sizeof (net_info->args)); +--- ncbi-tools6-6.1.20170106+dfsg1.orig/corelib/ncbimain.c ++++ ncbi-tools6-6.1.20170106+dfsg1/corelib/ncbimain.c +@@ -67,6 +67,7 @@ + #pragma segment NlmSegA + #endif + ++extern Nlm_Int2 Nlm_Main(void) __attribute__((weak)); + + /***************************************************************************** + * +@@ -95,7 +96,12 @@ main(int argc, char *argv[]) + /* Initialize connection library's logger, registry and lock */ + CONNECT_Init(0); + +- retval = Nlm_Main(); ++ if (Nlm_Main) { ++ retval = Nlm_Main(); ++ } else { ++ ErrPost(0, 0, "Neither main nor Nlm_Main defined by program."); ++ retval = -1; ++ } + + NlmThreadJoinAll(); + +--- ncbi-tools6-6.1.20170106+dfsg1.orig/corelib/ncbitime.c ++++ ncbi-tools6-6.1.20170106+dfsg1/corelib/ncbitime.c +@@ -77,6 +77,7 @@ + #include <ncbi.h> + #include <ncbithr.h> + #include <ncbiwin.h> ++#include <stdlib.h> + + #ifdef OS_UNIX + #include <sys/times.h> +@@ -108,8 +109,18 @@ NLM_EXTERN time_t LIBCALL Nlm_GetSecs ( + *****************************************************************************/ + NLM_EXTERN Nlm_Boolean LIBCALL Nlm_GetDayTime (Nlm_DayTimePtr dtp) + { ++ /* This function honors the SOURCE_DATE_EPOCH specificatin ++ (https://reproducible-builds.org/specs/source-date-epoch/) */ ++ const char *sde = getenv("SOURCE_DATE_EPOCH"); + #if (defined(SOLARIS_THREADS_AVAIL) || defined(POSIX_THREADS_AVAIL) || defined(WIN32)) && !defined(OS_UNIX_DARWIN) +- time_t t = time( NULL ); ++ time_t t; ++ if (sde) { ++ t = strtoul(sde, NULL, 0); ++ if (t == 0) ++ return FALSE; ++ } else { ++ t = time( NULL ); ++ } + #ifdef WIN32 + static TNlmMutex localtime_lock; + if (NlmMutexLockEx( &localtime_lock ) != 0) +@@ -125,7 +136,13 @@ NLM_EXTERN Nlm_Boolean LIBCALL Nlm_GetD + time_t ltime; + struct tm *dt; + Nlm_MemFill ((Nlm_VoidPtr) dtp, 0, sizeof(Nlm_DayTime)); +- time(<ime); ++ if (sde) { ++ ltime = strtoul(sde, NULL, 0); ++ if (ltime == 0) ++ return FALSE; ++ } else { ++ time(<ime); ++ } + if ((dt = localtime (<ime)) != NULL) + { + Nlm_MemCopy ((Nlm_VoidPtr) dtp, (Nlm_VoidPtr) dt, sizeof (struct tm)); +--- ncbi-tools6-6.1.20170106+dfsg1.orig/demo/asndisc.c ++++ ncbi-tools6-6.1.20170106+dfsg1/demo/asndisc.c +@@ -65,6 +65,7 @@ + #include <objmacro.h> + #include <macroapi.h> + ++#include <connect/ncbi_gnutls.h> + + #define ASNDISC_APP_VER "2.3" + +@@ -1264,6 +1265,8 @@ Int2 Main (void) + UseLocalAsnloadDataAndErrMsg (); + ErrPathReset (); + ++ SOCK_SetupSSL(NcbiSetupGnuTls); ++ + if (! AllObjLoad ()) { + Message (MSG_FATAL, "AllObjLoad failed"); + return 1; +--- ncbi-tools6-6.1.20170106+dfsg1.orig/demo/entrez2.c ++++ ncbi-tools6-6.1.20170106+dfsg1/demo/entrez2.c +@@ -61,6 +61,8 @@ + + #include <entrez2.h> + ++#include <connect/ncbi_gnutls.h> ++ + #define ENTREZ_APP_VERSION "12.1" + + #define MAX_QUERY_FORMS 256 +@@ -884,6 +886,8 @@ Int2 Main (void) + UseLocalAsnloadDataAndErrMsg (); + ErrPathReset (); + ++ SOCK_SetupSSL(NcbiSetupGnuTls); ++ + /*--------------------------------*/ + /* Initialize the global settings */ + /*--------------------------------*/ +@@ -1026,7 +1030,7 @@ Int2 Main (void) + /*--------------------------------------*/ + + if (useNormalServ) { +- EntrezSetService ("Entrez2"); ++ EntrezSetService ("Entrez2s"); + } else if (useTestServ) { + EntrezSetService ("Entrez2Test"); + } else if (useURL) { +--- ncbi-tools6-6.1.20170106+dfsg1.orig/demo/findspl.c ++++ ncbi-tools6-6.1.20170106+dfsg1/demo/findspl.c +@@ -62,6 +62,8 @@ + #include <accentr.h> + #include <sequtil.h> + ++#include <connect/ncbi_gnutls.h> ++ + #define NUMARGS 3 + Args myargs[NUMARGS] = { + {"Gi number of protein","0","1","99999999",FALSE,'g',ARG_INT,0.0,0,NULL}, +@@ -98,6 +100,8 @@ Int2 Main(void) + FILE *ofp; + FILE *ifp = NULL; + ++ SOCK_SetupSSL(NcbiSetupGnuTls); ++ + if ( !GetArgs("findspl", NUMARGS, myargs) ) return 1; + + gi = myargs[0].intvalue; +--- ncbi-tools6-6.1.20170106+dfsg1.orig/demo/gbseqget.c ++++ ncbi-tools6-6.1.20170106+dfsg1/demo/gbseqget.c +@@ -54,6 +54,8 @@ + #include <pmfapi.h> + #include <asn2gnbp.h> + ++#include <connect/ncbi_gnutls.h> ++ + static CharPtr ReadALine ( + CharPtr str, + size_t size, +@@ -417,6 +419,8 @@ Int2 Main (void) + UseLocalAsnloadDataAndErrMsg (); + ErrPathReset (); + ++ SOCK_SetupSSL(NcbiSetupGnuTls); ++ + if (! AllObjLoad ()) { + Message (MSG_FATAL, "AllObjLoad failed"); + return 1; +--- ncbi-tools6-6.1.20170106+dfsg1.orig/demo/insdseqget.c ++++ ncbi-tools6-6.1.20170106+dfsg1/demo/insdseqget.c +@@ -55,6 +55,8 @@ + #include <pmfapi.h> + #include <asn2gnbp.h> + ++#include <connect/ncbi_gnutls.h> ++ + #define INSDSEQGET_APP_VER "1.1" + + CharPtr INSDSEQGET_APPLICATION = INSDSEQGET_APP_VER; +@@ -423,6 +425,8 @@ Int2 Main (void) + UseLocalAsnloadDataAndErrMsg (); + ErrPathReset (); + ++ SOCK_SetupSSL(NcbiSetupGnuTls); ++ + if (! AllObjLoad ()) { + Message (MSG_FATAL, "AllObjLoad failed"); + return 1; +--- ncbi-tools6-6.1.20170106+dfsg1.orig/demo/nps2gps.c ++++ ncbi-tools6-6.1.20170106+dfsg1/demo/nps2gps.c +@@ -50,6 +50,8 @@ + #include <toasn3.h> + #include <pmfapi.h> + ++#include <connect/ncbi_gnutls.h> ++ + #define NPS2GPSAPP_VER "3.6" + + CharPtr NPS2GPSAPPLICATION = NPS2GPSAPP_VER; +@@ -2439,6 +2441,8 @@ Int2 Main (void) + UseLocalAsnloadDataAndErrMsg (); + ErrPathReset (); + ++ SOCK_SetupSSL(NcbiSetupGnuTls); ++ + if (! AllObjLoad ()) { + Message (MSG_FATAL, "AllObjLoad failed"); + return 1; +--- ncbi-tools6-6.1.20170106+dfsg1.orig/demo/taxblast_main.c ++++ ncbi-tools6-6.1.20170106+dfsg1/demo/taxblast_main.c +@@ -41,6 +41,8 @@ static char const rcsid[] = "$Id: taxbla + #include <objgen.h> + #include <taxblast.h> + ++#include <connect/ncbi_gnutls.h> ++ + + #define NUMARG (sizeof(myargs)/sizeof(myargs[0])) + +@@ -63,6 +65,8 @@ Int2 Main (void) + FILE *outfile; + Char ofile[128]; + ++ SOCK_SetupSSL(NcbiSetupGnuTls); ++ + if (!GetArgs("txblast", NUMARG, myargs)) { + return 1; + } +--- ncbi-tools6-6.1.20170106+dfsg1.orig/demo/tbl2asn.c ++++ ncbi-tools6-6.1.20170106+dfsg1/demo/tbl2asn.c +@@ -8911,10 +8911,12 @@ Int2 Main (void) + return 1; + } + ++ /* + if (MoreThanYearOld ()) { + too_old = TRUE; + Message (MSG_POST, "This copy of tbl2asn is more than a year old. Please download the current version."); + } ++ */ + + /* process command line arguments */ + +@@ -9668,6 +9670,9 @@ Int2 Main (void) + } + + if (tbl.other_failure) { ++ if (MoreThanYearOld ()) { ++ Message (MSG_POST, "This copy of tbl2asn is more than a year old. Please try again with the current version."); ++ } + return 1; + } + +--- ncbi-tools6-6.1.20170106+dfsg1.orig/desktop/bspview.c ++++ ncbi-tools6-6.1.20170106+dfsg1/desktop/bspview.c +@@ -2549,13 +2549,13 @@ NLM_EXTERN void Nlm_LaunchWebPage (Char + } + #endif + #ifdef WIN_MOTIF +- argv [0] = "netscape"; ++ argv [0] = "sensible-browser"; + argv [1] = url; + argv [2] = NULL; + child = fork(); + if(child == 0) { +- if (execvp ("netscape", argv) == -1) { +- Message (MSG_POST, "Unable to launch netscape"); ++ if (execvp ("sensible-browser", argv) == -1) { ++ Message (MSG_POST, "Unable to launch browser"); + exit(-1); + } + } +--- ncbi-tools6-6.1.20170106+dfsg1.orig/doc/dispatcher.html ++++ ncbi-tools6-6.1.20170106+dfsg1/doc/dispatcher.html +@@ -9,15 +9,15 @@ + --> + <META NAME="keywords" CONTENT="dispatcher toolkit"> + <META NAME="description" CONTENT="NCBI dispatcher"> +- <link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi2.css"> ++ <link rel="stylesheet" href="ncbi2.css"> + </head> + + +-<body bgcolor="#FFFFFF" background="http://www.ncbi.nlm.nih.gov/corehtml/bkgd.gif" text="#000000" link="#CC6600" vlink="#CC6600"> ++<body bgcolor="#FFFFFF" background="bkgd.gif" text="#000000" link="#CC6600" vlink="#CC6600"> + <!-- the header --> + <table border="0" width="600" cellspacing="0" cellpadding="0"> + <tr> +- <td width="140"><a href="http://www.ncbi.nlm.nih.gov"> <img src="http://www.ncbi.nlm.nih.gov/corehtml/left.GIF" width="130" height="45" border="0"></a></td> ++ <td width="140"><a href="http://www.ncbi.nlm.nih.gov"> <img src="left.gif" width="130" height="45" border="0"></a></td> + <td width="360" class="head1" valign="BOTTOM"> <span class="H1">Network Configuration</span></td> + <td width="100" valign="BOTTOM"></td> + </tr> +@@ -37,7 +37,7 @@ + <table border="0" width="600" cellspacing="0" cellpadding="0"> + <tr valign="TOP"> <!-- left column --> + <td width="125"> +- <img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.GIF" width="125" height="1" border="0"> ++ <img src="spacer10.gif" width="125" height="1" border="0"> + <p> + <a href="#Switch" class="GUTTER">The Switch</a> + <p> +@@ -52,7 +52,7 @@ + <a href="#Addendum" class="GUTTER">Additional Info</a> + </td> + <!-- extra column to force things over the gif border --> +- <td width="15"><img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.GIF" width="15" height="1" border="0"> </td> ++ <td width="15"><img src="spacer10.gif" width="15" height="1" border="0"> </td> + <!-- right content column --> + <td width="460"> + <p> </p> +--- ncbi-tools6-6.1.20170106+dfsg1.orig/doc/firewall.html ++++ ncbi-tools6-6.1.20170106+dfsg1/doc/firewall.html +@@ -9,15 +9,15 @@ + <META NAME="keywords" CONTENT="insert your keywords for the search engine"> + <META NAME="description" CONTENT="insert the description to be displayed by the search engine. Also searched by the search engine."> + --> +- <link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi2.css"> ++ <link rel="stylesheet" href="ncbi2.css"> + </head> + + +-<body bgcolor="#FFFFFF" background="http://www.ncbi.nlm.nih.gov/corehtml/bkgd.gif" text="#000000" link="#CC6600" vlink="#CC6600"> ++<body bgcolor="#FFFFFF" background="bkgd.gif" text="#000000" link="#CC6600" vlink="#CC6600"> + <!-- the header --> + <table border="0" width="600" cellspacing="0" cellpadding="0"> + <tr> +- <td width="140"><a href="http://www.ncbi.nlm.nih.gov"> <img src="http://www.ncbi.nlm.nih.gov/corehtml/left.GIF" width="130" height="45" border="0"></a></td> ++ <td width="140"><a href="http://www.ncbi.nlm.nih.gov"> <img src="left.gif" width="130" height="45" border="0"></a></td> + <td width="360" class="head1" valign="BOTTOM"> <span class="H1">Network Configuration</span></td> + <td width="100" valign="BOTTOM"></td> + </tr> +@@ -37,12 +37,12 @@ + <table border="0" width="600" cellspacing="0" cellpadding="0"> + <tr valign="TOP"> <!-- left column --> + <td width="125"> +-<img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.GIF" width="125" height="1" border="0"> ++<img src="spacer10.gif" width="125" height="1" border="0"> + + + </td> + <!-- extra column to force things over the gif border --> +- <td width="15"><img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.GIF" width="15" height="1" border="0"> </td> ++ <td width="15"><img src="spacer10.gif" width="15" height="1" border="0"> </td> + <!-- right content column --> + <td width="460"> + <p> </p> +@@ -133,7 +133,7 @@ in case the public access will eventuall + + <p> + To see what ports are currently on, and their status, as reported within +-NCBI, please refer to the following <a href="fwd_check.cgi">Firewall Daemon Presence ++NCBI, please refer to the following <a href="http://www.ncbi.nlm.nih.gov/IEB/ToolBox/NETWORK/fwd_check.cgi">Firewall Daemon Presence + Check</a> page. Ports marked <b>INTERNAL</b> are solely for NCBI own use, and may be + inaccessible from your site. That, however, does not affect availability of any + services that NCBI provides through other (open) firewall ports. +@@ -143,7 +143,7 @@ TROUBLESHOOTING: You can test whether t + your host just by running simple <tt>telnet</tt> command (available on most + current systems). To know which ports, at the moment, you should be trying + from the list above (see the "Ports to open"), first check their status by visiting +-<a href="fwd_check.cgi">Firewall Daemon Presence Check</a> link, then select any ++<a href="http://www.ncbi.nlm.nih.gov/IEB/ToolBox/NETWORK/fwd_check.cgi">Firewall Daemon Presence Check</a> link, then select any + up-and-running port and do the following (the example assumes port 5861 has + been shown in operational state): + <pre> +@@ -175,7 +175,7 @@ functions of NCBI dispatching facilities + + <p> + There is also an auxiliary automated UNIX shell script +-<a href="fwd_check.sh">fwd_check.sh</a> to check all of ++<a href="../libncbi6/examples/fwd_check.sh">fwd_check.sh</a> to check all of + the preset ports, and it is kept in-sync with currently + configured open ports (so remember to refresh your download + prior to actual use). +--- ncbi-tools6-6.1.20170106+dfsg1.orig/doc/fwd_check.sh ++++ ncbi-tools6-6.1.20170106+dfsg1/doc/fwd_check.sh +@@ -8,7 +8,7 @@ + delay_sec="$1" + delay_sec=${delay_sec:="10"} + netcat="`which nc 2>/dev/null`" +-temp="/tmp/`basename $0`.$$.tmp" ++temp=`mktemp` + helper="./fwd_failure_helper.exe" + test -z "$netcat" && netcat="`whereis nc | sed 's/^[^:]*://;s/ //g'`" + test -z "$HTTP_NCBI_EXTERNAL" && HTTP_CAF_EXTERNAL="$HTTP_NCBI_EXTERNAL" +--- ncbi-tools6-6.1.20170106+dfsg1.orig/doc/man/cleanasn.1 ++++ ncbi-tools6-6.1.20170106+dfsg1/doc/man/cleanasn.1 +@@ -1,4 +1,4 @@ +-.TH CLEANASN 1 2016-09-01 NCBI "NCBI Tools User's Manual" ++.TH CLEANASN 1 2017-01-09 NCBI "NCBI Tools User's Manual" + .SH NAME + cleanasn \- clean up irregularities in NCBI ASN.1 objects + .SH SYNOPSIS +@@ -75,6 +75,10 @@ Exclude nuc\-prot sets + Only segmented sequences + .IP w + Exclude segmented sequences ++.IP x ++Only segmented proteins ++.IP y ++Exclude segmented proteins + .PD + .RE + .TP +@@ -86,6 +90,8 @@ Sequence operations, per the flags in st + Compress + .IP d + Decompress ++.IP l ++Recalculated segmented sequence length + .IP v + Virtual gaps inside segmented sequence + .IP s +--- /dev/null ++++ ncbi-tools6-6.1.20170106+dfsg1/doc/man/taxblast.1 +@@ -0,0 +1,31 @@ ++.TH TAXBLAST 1 2016-12-05 NCBI "NCBI Tools User's Manual" ++.SH NAME ++taxblast \- annotate BLAST output with taxonomic details ++.SH SYNOPSIS ++.B taxblast ++[\|\fB\-\fP\|] ++[\|\fB\-d\fP\ \fIstr\fP\|] ++\fB\-i\fP\ \fIfilename\fP ++[\|\fB\-o\fP\ \fIfilename\fP\|] ++[\|\fB\-p\fP\|] ++.SH DESCRIPTION ++\fBtaxblast\fP annotates BLAST output with taxonomic details. ++.SH OPTIONS ++A summary of options is included below. ++.TP ++\fB\-\fP ++Print usage message ++.TP ++\fB\-d\fP\ \fIstr\fP ++Database used to get SeqAnnot ASN.1 (\fBnr\fP by default) ++.TP ++\fB\-i\fP\ \fIfilename\fP ++Input ASN.1 File (SeqAnnot) ++.TP ++\fB\-o\fP\ \fIfilename\fP ++Output file name (stdout by default) ++.TP ++\fB\-p\fP ++Sequence is DNA ++.SH AUTHOR ++The National Center for Biotechnology Information. +--- ncbi-tools6-6.1.20170106+dfsg1.orig/make/makeall.unx ++++ ncbi-tools6-6.1.20170106+dfsg1/make/makeall.unx +@@ -1,4 +1,4 @@ +-# makefile for asntool and ncbi core routines, ++# -*- makefile -*- for asntool and ncbi core routines, + # + # $Id: makeall.unx,v 6.321 2016/12/31 22:35:10 ucko Exp $ + # +@@ -234,7 +234,7 @@ SRC20 = drawseq.c dotmatrx.c fea2seg.c f + dlgutil1.c dlgutil2.c e2trmlst.c e2docsum.c asn2graphic.c \ + medview.c bspview.c gbfview.c gphview.c gphdraw.c gxydraw.c gtrdraw.c \ + seqpanel.c ingengraph.c ingenext.c ingenwin.c macrodlg.c \ +- biosrc.c cdrgn.c import.c pubdesc.c seqsub.c mapgene.c prtgene.c salogif.c ++ biosrc.c cdrgn.c import.c pubdesc.c seqsub.c mapgene.c prtgene.c + + SRC45 = ddvclick.c ddvgraph.c ddvopen.c ddvpanel.c + +@@ -392,7 +392,7 @@ OBJ20 = drawseq.o dotmatrx.o fea2seg.o f + dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o \ + medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o \ + seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o \ +- biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o salogif.o ++ biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o + + OBJ45 = ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o + +@@ -491,14 +491,14 @@ ln-if-absent: ../make/ln-if-absent + nocopy : sources $(THR_OBJ) $(LIB1) $(LIBTLS) $(LIB2) $(LIB3) $(DLIB4) $(DLIB400) \ + $(LIB5) $(DLIB20) $(DLIB45) $(LIB22) $(LIB23) $(LIBCOMPADJ) \ + $(DLIB28) $(DLIB30) $(DLIB3000) \ +- $(DLIB34) $(DLIB37) $(DLIB38) $(LIB50) $(LIB60) $(LIB61) $(NCBI_SHLIBS) ++ $(DLIB34) $(DLIB37) $(DLIB38) $(LIB60) $(LIB61) $(NCBI_SHLIBS) + + sources : $(SRCALL) + + ## To clean out the directory without removing make + ## + clean : +- -rm -f *.[acho] ++ -rm -f *.[acho] *.glo + + .NO_PARALLEL: copy $(ULIB4) $(ULIB30) + +@@ -656,10 +656,12 @@ shlib.sol : + cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so/"` NCBI_OTHERLIBS=$(OTHERLIBS) + rm -f ../shlib/*.a + +-# +-# Linux shared libs are built the same in the same manner as for SGI +-# +-shlib.lnx : shlib.sgi ++shlib.lnx : ++ -mkdir ../shlib ++ -rm -f ../shlib/*.a ++ ln $(NCBI_LIBDIR)/*.a ../shlib ++ cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so.$(NCBI_VERSION_MAJOR)/"` SH1="$(CC) -o" SH2="-shared *.o" ++ rm -f ../shlib/*.a + + shlib.sgi : + -mkdir ../shlib +@@ -792,7 +794,7 @@ copy : + cp -fp ../algo/blast/core/*.h ../include/algo/blast/core + - mkdir -p ../include/algo/blast/composition_adjustment + $(SRCCOPY) ../algo/blast/composition_adjustment/*.c . +- $(SRCCOPY) ../algo/blast/composition_adjustment/*.h ../include ++# $(SRCCOPY) ../algo/blast/composition_adjustment/*.h ../include + cp -fp ../algo/blast/composition_adjustment/*.h \ + ../include/algo/blast/composition_adjustment + - mkdir -p ../include/algo/blast/api +--- ncbi-tools6-6.1.20170106+dfsg1.orig/make/makedemo.unx ++++ ncbi-tools6-6.1.20170106+dfsg1/make/makedemo.unx +@@ -1,4 +1,4 @@ +-# makefile for demo programs ++# -*- makefile -*- for demo programs + # + # $Id: makedemo.unx,v 6.96 2016/08/31 19:05:26 ucko Exp $ + # +@@ -228,7 +228,8 @@ cdscan : cdscan.c + # findspl + + findspl : findspl.c +- $(CC) -o findspl $(LDFLAGS) findspl.c $(ENTREZLIBS) $(LIB2) $(LIB1) $(OTHERLIBS) ++ $(CC) -o findspl $(LDFLAGS) findspl.c $(ENTREZLIBS) $(LIB2) $(LIB1) \ ++ $(LIBTLS) $(OTHERLIBS) + + # errhdr + +--- ncbi-tools6-6.1.20170106+dfsg1.orig/make/makenet.unx ++++ ncbi-tools6-6.1.20170106+dfsg1/make/makenet.unx +@@ -1,4 +1,4 @@ +-# makefile for network demo programs and network entrez ++# -*- makefile -*- for network demo programs and network entrez + # + # $Id: makenet.unx,v 6.261 2016/08/25 15:37:04 ucko Exp $ + # test, ignore +@@ -330,6 +330,8 @@ OBJ46 = id2.o id2sgen.o + + # objects & sources needed for versions of network demo programs + ++OBJCN3D = cn3dmain.o ++ + OBJDDV = ddvmain.o + + OBJUDV = udvmain.o +@@ -445,10 +447,12 @@ shlib.sol : + cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so/"` NCBI_OTHERLIBS=$(OTHERLIBS) + rm -f ../shlib/*.a + +-# +-# Linux shared libs are built the same in the same manner as for SGI +-# +-shlib.lnx : shlib.sgi ++shlib.lnx : ++ -mkdir ../shlib ++ -rm -f ../shlib/*.a ++ ln $(NCBI_LIBDIR)/*.a ../shlib ++ cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so.$(NCBI_VERSION_MAJOR)/"` SH1="$(CC) -o" SH2="-shared *.o" ++ rm -f ../shlib/*.a + + shlib.sgi : + -mkdir ../shlib +@@ -518,7 +522,7 @@ copy : + $(SRCCOPY) ../network/vibnet/*.h ../include + $(SRCCOPY) ../cdromlib/*.h ../include + -$(SRCCOPY) ../network/wwwblast/Src/*.c . +- -$(SRCCOPY) ../network/wwwblast/Src/*.h ../include ++# -$(SRCCOPY) ../network/wwwblast/Src/*.h ../include + $(SRCCOPY) ../cdromlib/accentr.c . + $(SRCCOPY) ../cdromlib/accutils.c . + -$(SRCCOPY) ../sequin/*.* . +@@ -952,6 +956,11 @@ accvdb.o : accvdb.c + ## + + ++Cn3D : $(OBJCN3D) $(BENTREZLIBS) netentcf $(BLIB36) ++ $(CC) -o Cn3D $(LDFLAGS) $(OBJCN3D) $(LIB31) $(LIB3000) $(LIB20) \ ++ $(LIB45) $(LIB22) $(LIB8) $(LIB7) \ ++ $(LIB400) $(LIB2) $(LIB1) $(VIBLIBS) $(OGLLIBS) ++ + ddv : $(OBJDDV) + $(CC) -o ddv $(LDFLAGS) $(OBJDDV) $(LIB41) $(LIB31) $(LIB20) $(LIB61) $(LIB60) $(LIB22) $(LIB45) \ + $(LIB8) $(LIB7) $(NETCLILIB) $(LIB3) $(LIB4) $(LIB23) \ +@@ -1097,8 +1106,8 @@ asnval_dbx_psf.o : asnval.c + # asndisc program (asndisc) + asndisc : asndisc.c + $(CC) -g -o asndisc $(LDFLAGS) asndisc.c $(THREAD_OBJ) $(LIB41) \ +- $(NETCLILIB) $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIB1) \ +- $(OTHERLIBS) $(THREAD_OTHERLIBS) ++ $(NETCLILIB) $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIBTLS) $(LIB1) \ ++ $(GNUTLS_LIBS) $(OTHERLIBS) $(THREAD_OTHERLIBS) + + # asndisc_psf, uses PUBSEQBioseqFetchEnable instead of PubSeqFetchEnable + # should be used only internally within NCBI. +@@ -1150,17 +1159,19 @@ diffshift : diffshift.c + # gbseqget program (gbseqget) + gbseqget : gbseqget.c + $(CC) -g -o gbseqget $(LDFLAGS) gbseqget.c $(LIB41) $(NETCLILIB) \ +- $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIB1) $(OTHERLIBS) ++ $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIBTLS) $(LIB1) \ ++ $(GNUTLS_LIBS) $(OTHERLIBS) + + # insdseqget program (insdseqget) + insdseqget : insdseqget.c + $(CC) -g -o insdseqget $(LDFLAGS) insdseqget.c $(LIB41) $(NETCLILIB) \ +- $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIB1) $(OTHERLIBS) ++ $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIBTLS) $(LIB1) \ ++ $(GNUTLS_LIBS) $(OTHERLIBS) + + # nps2gps program (nps2gps) + nps2gps : nps2gps.c + $(CC) -g -o nps2gps $(LDFLAGS) nps2gps.c $(LIB23) $(LIBCOMPADJ) \ +- $(LIB2) $(LIB1) $(OTHERLIBS) ++ $(LIB2) $(LIBTLS) $(LIB1) $(GNUTLS_LIBS) $(OTHERLIBS) + + # trna2sap program (trna2sap) + trna2sap : trna2sap.c +@@ -1181,7 +1192,8 @@ testent2 : testent2.c + entrez2 : entrez2.c + $(CC) -g -o entrez2 $(LDFLAGS) entrez2.c $(LIB41) $(LIB6) $(LIB20) \ + $(LIB61) $(LIB60) $(LIB22) $(LIB23) $(LIBCOMPADJ) \ +- $(LIB2) $(LIB4) $(LIB1) $(VIBLIBS) $(OTHERLIBS) ++ $(LIB2) $(LIB4) $(LIBTLS) $(LIB1) \ ++ $(GNUTLS_LIBS) $(VIBLIBS) $(OTHERLIBS) + $(VIB_POST_LINK) entrez2 + + # demo program (spidey) +@@ -1285,7 +1297,7 @@ bl2seq : bl2seq.c + taxblast: taxblast_main.c $(BLIB41) $(BLIB40) + $(CC) -g -o taxblast $(LDFLAGS) taxblast_main.c \ + $(LIB61) $(LIB60) $(LIB36) $(LIB41) $(LIB40) $(LIB23) $(LIBCOMPADJ) \ +- $(NETCLILIB) $(LIB2) $(LIB1) $(OTHERLIBS) ++ $(NETCLILIB) $(LIB2) $(LIBTLS) $(LIB1) $(GNUTLS_LIBS) $(OTHERLIBS) + + # test client for the suggest network service + suggcli: suggcli.c $(BNETCLILIB) $(BLIB24) +--- ncbi-tools6-6.1.20170106+dfsg1.orig/make/makeshlb.unx ++++ ncbi-tools6-6.1.20170106+dfsg1/make/makeshlb.unx +@@ -1,4 +1,4 @@ +-# ++# -*- makefile -*- + # + # $Id: makeshlb.unx,v 6.1 1999/03/18 17:31:11 beloslyu Exp $ + # +@@ -12,7 +12,115 @@ SH1 = ld -G -o + SH2 = `lorder *.o | tsort` $(NCBI_OTHERLIBS) + + %.so: %.a +- rm -f *.o __* ++ rm -f *.o *.glo __* + ar x $< ++ case $< in \ ++ *OGL.a) for f in *.glo; do mv $$f `basename $$f .glo`.o; done ;; \ ++ esac + $(SH1) $@ $(SH2) + rm -f *.o __* ++ ++so=so.$(NCBI_VERSION_MAJOR).$(NCBI_VERSION_MINOR) ++ ++%.$(so): %.a ++ $(CC) -shared -Wl,-soname=$*.so.$(NCBI_VERSION_MAJOR) -o $@ \ ++ -Wl,--whole-archive $< -Wl,--no-whole-archive $(LDFLAGS) \ ++ $($*_deps) $($*_sysdeps) ++ ++%.so.$(NCBI_VERSION_MAJOR): %.$(so) ++ ln -s $< $@ ++ ln -s $< $*.so ++ ++# Make libncbiCacc and libncbiacc pointers to libncbiNacc, since it's ++# the most useful variant in the usual (net-only) case. Do the same ++# for libnetentr, and link the static version into libncbiNacc.so, due ++# to a circular dependency. ++libnetentr.$(so) libncbiCacc.$(so) libncbiacc.$(so): ++ ln -s libncbiNacc.$(so) $@ ++ ++# Standardize on the OpenGL-enabled versions of Vibrant, since there's ++# no longer any real penalty in doing so. ++libvibrant.$(so): ++ ln -s libvibrantOGL.$(so) $@ ++libncbicn3d.$(so): ++ ln -s libncbicn3dOGL.$(so) $@ ++ ++libblast_deps = libblastcompadj.$(so) libncbi.$(so) ++libblast_sysdeps = -lm ++libblastapi_deps = libblast.$(so) libncbitool.$(so) libncbiobj.$(so) \ ++ libncbi.$(so) ++libblastapi_sysdeps = -lm ++libblastcompadj_sysdeps = -lm ++libconnssl_deps = libncbi.$(so) ++libconnssl_sysdeps = -lgnutls ++libncbi_sysdeps = -lm ++# libncbiCacc_deps = libncbicdr.$(so) libnetentr.a libnetcli.$(so) ++libncbiNacc_deps = libncbicdr.$(so) libnetentr.a libnetcli.$(so) \ ++ libncbiobj.$(so) libncbi.$(so) ++libncbiNacc_sysdeps = -lm ++# libncbiacc_deps = libncbicdr.$(so) ++libncbicdr_deps = libncbiobj.$(so) libncbi.$(so) ++libncbiid1_deps = libncbiobj.$(so) libnetcli.$(so) libncbi.$(so) ++libncbimla_deps = libncbiobj.$(so) libnetcli.$(so) libncbi.$(so) ++libncbimmdb_deps = libncbiid1.$(so) libncbitool.$(so) libncbiobj.$(so) \ ++ libncbi.$(so) ++libncbimmdb_sysdeps = -lm ++libncbiobj_deps = libncbi.$(so) ++libncbiobj_sysdeps = -lm ++libncbitool_deps = libblastcompadj.$(so) libncbiobj.$(so) libncbi.$(so) ++libncbitool_sysdeps = -lm ++libncbitxc2_deps = libncbitool.$(so) libnetcli.$(so) libncbiobj.$(so) \ ++ libncbi.$(so) ++libncbitxc2_sysdeps = -lm ++libnetblast_deps = libncbitool.$(so) libnetcli.$(so) libncbiobj.$(so) \ ++ libncbi.$(so) ++libnetcli_deps = libncbi.$(so) ++# libnetentr_deps = libncbiacc.$(so) libnetcli.$(so) ++libvibgif_deps = libncbi.$(so) ++libvibgif_sysdeps = -lm ++ ++libddvlib_deps = libncbidesk.$(so) libvibrantOGL.$(so) \ ++ libncbitool.$(so) libncbiobj.$(so) libncbi.$(so) ++libncbicn3d_deps = libncbiNacc.$(so) libddvlib.$(so) libncbidesk.$(so) \ ++ libncbimmdb.$(so) libncbitool.$(so) libncbiobj.$(so) \ ++ libncbi.$(so) ++libncbicn3dOGL_deps = $(libncbicn3d_deps) libvibrantOGL.$(so) ++libncbicn3dOGL_sysdeps = -lm ++libncbidesk_deps = libblastapi.$(so) libncbimmdb.$(so) libncbitool.$(so) \ ++ libvibrantOGL.$(so) libncbiobj.$(so) libncbi.$(so) ++libncbidesk_sysdeps = -lm ++libvibnet_deps = libncbiNacc.$(so) libncbidesk.$(so) libncbimmdb.$(so) \ ++ libvibrantOGL.$(so) libncbitool.$(so) \ ++ libncbicdr.$(so) libncbiobj.$(so) libncbi.$(so) ++# libvibrant_deps = libncbi.$(so) ++# libvibrant_sysdeps = $(VIBLIBS) ++# for ddvcolor stuff ++libvibrantOGL_deps = libncbiobj.$(so) libncbi.$(so) ++libvibrantOGL_sysdeps = $(OGLLIBS) $(VIBLIBS) -lm ++ ++# XXX - is there a way to express these programmatically? ++libblast.$(so): $(libblast_deps) ++libblastapi.$(so): $(libblastapi_deps) ++libconnssl.$(so): $(libconnssl_deps) ++# libncbiCacc.$(so): $(libncbiCacc_deps) ++libncbiNacc.$(so): $(libncbiNacc_deps) ++# libncbiacc.$(so): $(libncbiacc_deps) ++libncbicdr.$(so): $(libncbicdr_deps) ++libncbiid1.$(so): $(libncbiid1_deps) ++libncbimla.$(so): $(libncbimla_deps) ++libncbimmdb.$(so): $(libncbimmdb_deps) ++libncbiobj.$(so): $(libncbiobj_deps) ++libncbitool.$(so): $(libncbitool_deps) ++libncbitxc2.$(so): $(libncbitxc2_deps) ++libnetblast.$(so): $(libnetblast_deps) ++libnetcli.$(so): $(libnetcli_deps) ++# libnetentr.$(so): $(libnetentr_deps) ++ ++libddvlib.$(so): $(libddvlib_deps) ++# libncbicn3d.$(so): $(libncbicn3d_deps) ++libncbicn3dOGL.$(so): $(libncbicn3dOGL_deps) ++libncbidesk.$(so): $(libncbidesk_deps) ++libvibgif.$(so): $(libvibgif_deps) ++libvibnet.$(so): $(libvibnet_deps) ++# libvibrant.$(so): $(libvibrant_deps) ++libvibrantOGL.$(so): $(libvibrantOGL_deps) +--- ncbi-tools6-6.1.20170106+dfsg1.orig/tools/readdb.c ++++ ncbi-tools6-6.1.20170106+dfsg1/tools/readdb.c +@@ -10167,7 +10167,10 @@ static Int2 FDBFinish (FormatDBPtr + return 1; + + MemSet(dateTime, 0, DATETIME_LENGTH); +- Nlm_DayTimeStr(dateTime, TRUE, TRUE); ++ /* SOURCE_DATE_EPOCH specification: "If the value is malformed, the ++ build process SHOULD exit with a non-zero error code." */ ++ if (!Nlm_DayTimeStr(dateTime, TRUE, TRUE)) ++ return 1; + + /* write db_title and date-time stamp eigth bytes aligned */ + tmp = title_len + StringLen(dateTime); +--- ncbi-tools6-6.1.20170106+dfsg1.orig/vibrant/netscape.c ++++ ncbi-tools6-6.1.20170106+dfsg1/vibrant/netscape.c +@@ -548,9 +548,8 @@ static Boolean NS_LoadNetscape(const cha + } + + /* ---------- child process ------------ */ +- if (execlp("netscape", "netscape", url, NULL) < 0 && +- execl(NETSCAPE_PATH, NETSCAPE_PATH, url, NULL) < 0) { +- Message(MSG_ERROR, "Failure to open URL in netscape window"); ++ if (execlp("sensible-browser", "sensible-browser", url, NULL) < 0) { ++ Message(MSG_ERROR, "Failure to open URL in browser window"); + exit(1); + } + +--- ncbi-tools6-6.1.20170106+dfsg1.orig/vibrant/shim3d.c ++++ ncbi-tools6-6.1.20170106+dfsg1/vibrant/shim3d.c +@@ -321,6 +321,7 @@ + + #ifdef _PNG + #include <png.h> /* must go berore ncbi headers */ ++#include <zlib.h> + #ifndef png_jmpbuf + #define png_jmpbuf(x) ((x)->jmpbuf) + #endif +@@ -339,7 +340,8 @@ NLM_EXTERN void LIBCALL Nlm_HeapSort PRO + #include <ddvcolor.h> + + #if defined(_OPENGL) && defined(_PNG) +-TOGL_Data *Cn3D_GetCurrentOGLData(void); /* in cn3dxprt.c */ ++/* In cn3dxprt.c; declared weak here to avoid dependency loops. */ ++extern TOGL_Data *Cn3D_GetCurrentOGLData(void) __attribute__((weak)); + #endif + + +@@ -2939,7 +2941,15 @@ void Nlm_SaveImagePNG(Nlm_Char *fname) + png_structp png_ptr = NULL; + png_infop info_ptr = NULL; + Nlm_Boolean doInterlacing = TRUE; +- TOGL_Data *OGL_Data = (TOGL_Data *)(Cn3D_GetCurrentOGLData()); ++ TOGL_Data *OGL_Data; ++ ++ if (!Cn3D_GetCurrentOGLData) { ++ Message(MSG_ERROR, "PNG output unavailable; " ++ "please relink application with -lncbicn3d."); ++ return; ++ } ++ ++ OGL_Data = (TOGL_Data *)(Cn3D_GetCurrentOGLData()); + + #if defined(WIN_MOTIF) + GLint glSize; +@@ -3720,4 +3730,3 @@ void Nlm_AddHalfWorm3D(Nlm_Picture3D pic + if (fblock) + MemFree(fblock); + } +- +--- ncbi-tools6-6.1.20170106+dfsg1.orig/vibrant/vibmain.c ++++ ncbi-tools6-6.1.20170106+dfsg1/vibrant/vibmain.c +@@ -44,6 +44,21 @@ + + + ++extern Nlm_Int2 Nlm_Main(void) __attribute__((weak)); ++ ++static Nlm_Int2 s_CallNlmMain(void) ++{ ++ if (Nlm_Main) { ++ return Nlm_Main(); ++ } else { ++ ErrPost(0, 0, "Neither main nor Nlm_Main defined by program."); ++ return -1; ++ } ++} ++ ++#define Nlm_Main s_CallNlmMain ++ ++ + #ifdef WIN_MAC + #ifdef OS_UNIX_DARWIN + int main (int argc, char *argv[]) +--- ncbi-tools6-6.1.20170106+dfsg1.orig/vibrant/vibwndws.c ++++ ncbi-tools6-6.1.20170106+dfsg1/vibrant/vibwndws.c +@@ -6818,7 +6818,7 @@ extern void Nlm_VibMainPrelude (int argc + Nlm_InitPrompt (); + Nlm_InitSlate (); + Nlm_InitTexts (); +- if (! Nlm_SetupWindows ()) return; ++ if (! Nlm_SetupWindows ()) exit(1); + Nlm_RegisterWindows (); + Nlm_RegisterTexts (); + Nlm_RegisterSlates (); diff --git a/debian/patches/series b/debian/patches/series new file mode 100644 index 00000000..7bb82529 --- /dev/null +++ b/debian/patches/series @@ -0,0 +1 @@ +debian-changes diff --git a/debian/rules b/debian/rules new file mode 100755 index 00000000..ec229776 --- /dev/null +++ b/debian/rules @@ -0,0 +1,225 @@ +#!/usr/bin/make -f +DEB_VERSION=$(shell dpkg-parsechangelog | awk '/^Version:/ { print $$2 }') +export NCBI_VERSION_FULL=$(DEB_VERSION) +export NCBI_VERSION=$(word 1, $(subst -, ,$(NCBI_VERSION_FULL))) +export NCBI_VERSION_MAJOR=$(word 1, $(subst ., ,$(NCBI_VERSION))) +export NCBI_VERSION_MINOR=$(NCBI_VERSION:$(NCBI_VERSION_MAJOR).%=%) +export NCBI_VERSION_DATE =$(word 3, $(subst ., ,$(NCBI_VERSION))) +export NCBI_VERSION_DEBREL=$(word 2, $(subst -, ,$(NCBI_VERSION_FULL))) + +testversions: + env | fgrep NCBI_VERSION + +# Set these here, rather than using the csh hackage that passes for an +# upstream build system. Mostly taken from ../platform/{ppc,}linux.ncbi.mk. +include /usr/share/dpkg/buildtools.mk +VIBFLAG = -DWIN_MOTIF +VIBLIBS = -lXm -lXmu -lXt -lX11 # -lXext # -lXp +OTHERLIBS = -lm +RANLIB = ranlib +MT_OTHERLIBS = -lpthread +THREAD_OBJ = ncbithr.o +NETENTREZVERSION = 2.02c2ASN1SPEC6 + +export DEB_BUILD_MAINT_OPTIONS=hardening=+all + +CFLAGS := $(shell dpkg-buildflags --get CFLAGS) -Wall \ + $(shell dpkg-buildflags --get CPPFLAGS) +ifeq ($(DEB_HOST_ARCH),alpha) +CFLAGS += -mieee +endif +CFLAGS_PIC = $(filter-out -fPIE,$(CFLAGS)) -fPIC +LDFLAGS := $(shell dpkg-buildflags --get LDFLAGS) +LDFLAGS1 := $(CFLAGS) $(LDFLAGS) -Wl,--as-needed -Wl,-rpath-link,../shlib + +OGL_TARGETS = Cn3D +OGL_LIBVARS = LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a +OGLLIBS = -lGLU -lGL + +PNG_INCLUDE = -D_PNG +PNG_LIBS = -lpng # -lz + +USESHLIB = NCBI_LINKINGLIBDIR="../shlib" +MAKESHLIB = $(USESHLIB) NCBI_SHLIBS=shlib +# Controls how shared libraries are built; appropriate for ELF w/GNU tools. + +export NCBI_LBSM_SRC=ncbi_lbsmd_stub.c +export NCBI_LBSM_OBJ=ncbi_lbsmd_stub.o + +VIB = Psequin sbtedit udv ddv taxblast idfetch asn2gb tbl2asn gene2xml \ + entrez2 gbseqget asn2all asn2asn asn2fsa asn2xml asndisc asnmacro \ + asnval cleanasn insdseqget nps2gps spidey trna2sap trna2tbl \ + $(OGL_TARGETS) + +#OTHERS = others +OTHERS = libncbimla.a libnetblast.a libncbitxc2.a libncbiid1.a shlib + +COMMON_FLAGS = LCL=lnx CC="$(CC)" LDFLAGS1="$(LDFLAGS1)" RAN="$(RANLIB)" +COMMON_FLAGS += OTHERLIBS="$(OTHERLIBS)" VIBLIBS="$(VIBLIBS)" +COMMON_FLAGS += VIBFLAG="$(VIBFLAG)" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS + +ICONS = debian/asntool.xpm debian/ncbilogo.xpm + +MAKE_IN_BUILD = $(MAKE) -C build + +%: + dh $@ + +# Explicit rule to avoid an infinite loop +build: + dh $@ + +override_dh_auto_build-arch: + cd build && ln -s ../make/*.unx . + ln -s ../make/ln-if-absent build + mv build/makeall.unx build/makefile + $(MAKE_IN_BUILD) all $(COMMON_FLAGS) $(USESHLIB) \ + CFLAGS1="-c $(CFLAGS_PIC) $(PNG_INCLUDE)" \ + LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \ + LIB30=libncbicn3d.a LIB45=libddvlib.a $(OGL_LIBVARS) + $(MAKE_IN_BUILD) -f makenet.unx $(COMMON_FLAGS) $(USESHLIB) \ + CFLAGS1="-c $(CFLAGS_PIC)" \ + LDFLAGS="$(filter-out -fPIE -pie,$(LDFLAGS))" \ + NETENTREZVERSION="$(NETENTREZVERSION)" \ + BLIB31=libvibnet.a OGLLIBS="$(OGLLIBS) $(PNG_LIBS)" all $(OTHERS) +# Clear out the PIC objects + $(MAKE_IN_BUILD) clean + + $(MAKE_IN_BUILD) all $(COMMON_FLAGS) $(USESHLIB) \ + CFLAGS1="-c $(CFLAGS) $(PNG_INCLUDE)" \ + LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \ + LIB30=libncbicn3d.a LIB45=libddvlib.a $(OGL_LIBVARS) +# Build demos without vibrant to avoid unnecessary dependencies; +# users who want the Vibrant UI can use vibrate(1). + $(MAKE_IN_BUILD) -f makedemo.unx $(COMMON_FLAGS) $(USESHLIB) \ + CFLAGS1="-c $(CFLAGS)" VIBLIBS= VIBFLAG= LIB50=-lpcre +# Don't bother passing OGLLIBS or VIBLIBS, which apps don't use directly. + $(MAKE_IN_BUILD) -f makenet.unx $(COMMON_FLAGS) $(USESHLIB) \ + CFLAGS1="-c $(CFLAGS)" THREAD_OBJ="$(THREAD_OBJ)" \ + THREAD_OTHERLIBS="$(MT_OTHERLIBS)" \ + NETENTREZVERSION="$(NETENTREZVERSION)" BLIB31=libvibnet.a \ + OGLLIBS= VIBLIBS= VIB="$(VIB)" +# date > VERSION + +override_dh_auto_clean: + -rm -rf build/* bin/* include/* lib/* shlib + mkdir -p build bin include lib + -rm -f debian/*.menu $(ICONS) + chmod -x debian/makemenu debian/installman + +DEB_HOST_MULTIARCH ?= $(shell dpkg-architecture -qDEB_HOST_MULTIARCH) +destlibdir=debian/tmp/usr/lib/$(DEB_HOST_MULTIARCH) +icon_in = link/mswin/ncbilogo.ico +hi = debian/ncbi-data/usr/share/icons/hicolor + +override_dh_auto_install-arch: + install -d $(destlibdir) + install -m 644 lib/* shlib/*.so.$(NCBI_VERSION) $(destlibdir) + for x in ncbiacc ncbiCacc netentr; do \ + rm -f $(destlibdir)/lib$$x.so.$(NCBI_VERSION) && \ + ln -s libncbiNacc.so.$(NCBI_VERSION_MAJOR) \ + $(destlibdir)/lib$$x.so.$(NCBI_VERSION_MAJOR) && \ + ln -s libncbiNacc.so $(destlibdir)/lib$$x.so; \ + done + for x in ncbicn3d vibrant; do \ + rm -f $(destlibdir)/lib$$x.so.$(NCBI_VERSION) && \ + ln -s lib$${x}OGL.so.$(NCBI_VERSION_MAJOR) \ + $(destlibdir)/lib$$x.so.$(NCBI_VERSION_MAJOR) && \ + ln -s lib$${x}OGL.so $(destlibdir)/lib$$x.so; \ + done + rm -f $(destlibdir)/libregexp.* + cd $(destlibdir) && \ + for f in *.so.$(NCBI_VERSION); do \ + base=`basename $$f .so.$(NCBI_VERSION)` && \ + ln -s $$f $$base.so.$(NCBI_VERSION_MAJOR) && \ + ln -s $$f $$base.so; \ + done + + install -d debian/tmp/usr/include/ncbi + cp -LRp include/* debian/tmp/usr/include/ncbi + cd debian/tmp/usr/include/ncbi && \ + rm -f FSpCompat.h FullPath.h More*.h Optimization*.h pcre*.h + find debian/tmp/usr/include -type f | xargs chmod 644 + + install -d debian/tmp/usr/bin + install `find build -type f -perm /111 -print` debian/tmp/usr/bin + rm -f debian/tmp/usr/bin/*test* + rm -f debian/tmp/usr/bin/*demo* +# Useless as a binary, and seems to be broken anyway + rm -f debian/tmp/usr/bin/dosimple +# Seems to be a functional version of sort(1) with no special features +# (but lacking some features of GNU sort) + rm -f debian/tmp/usr/bin/ncbisort +# Obsolete + rm -f debian/tmp/usr/bin/cdscan + rm -f debian/tmp/usr/bin/entrcmd +# install -d debian/tmp/usr/lib/cgi-bin + mv debian/tmp/usr/bin/Cn3D debian/tmp/usr/bin/Cn3D-3.0 +# mv debian/tmp/usr/bin/fmerge debian/tmp/usr/bin/fastamerge + +override_dh_auto_install-indep: + convert link/mswin/asntool.ico debian/asntool.xpm + icotool -x -w 32 -b 32 -o - $(icon_in) | \ + convert png:- debian/ncbilogo.xpm + install -d debian/ncbi-data/etc/ncbi + install -m 644 debian/.*rc debian/ncbi-data/etc/ncbi + install -d debian/ncbi-data/usr/bin + install debian/vibrate debian/ncbi-data/usr/bin + install -d debian/ncbi-data/usr/share/ncbi/data + install -m 644 data/* debian/ncbi-data/usr/share/ncbi/data + install -d debian/ncbi-rrna-data/usr/share/ncbi/data + mv debian/ncbi-data/usr/share/ncbi/data/*_[n9]*.n?? \ + debian/ncbi-data/usr/share/ncbi/data/rRNA*.nal \ + debian/ncbi-data/usr/share/ncbi/data/Combined16SrRNA.n?? \ + debian/ncbi-rrna-data/usr/share/ncbi/data/ + install -d debian/ncbi-data/usr/share/pixmaps + install -m 644 $(ICONS) debian/ncbi-data/usr/share/pixmaps + for w in 16 32 48 256; do \ + d=$${w}x$${w} && \ + install -d $(hi)/$$d && \ + icotool -x -w $$w -b 32 -o $(hi)/$$d/ncbilogo.png $(icon_in) \ + || exit 1 ; \ + done + +override_dh_installchangelogs: + dh_installchangelogs -k README + +override_dh_installmenu-arch: + chmod +x debian/makemenu + debian/makemenu debian/ncbi-cn3d.install + debian/makemenu debian/ncbi-tools-x11.install +# debian/makemenu -v debian/ncbi-tools-bin.install + dh_installmenu + +override_dh_installdocs-arch: + dh_installdocs + install -m 644 config/README \ + debian/libncbi6/usr/share/doc/libncbi6/README.config + install -m 644 network/nsclilib/readme \ + debian/libncbi6/usr/share/doc/libncbi6/README.net-cfg + install -m 644 doc/fa2htgs/README \ + debian/ncbi-tools-bin/usr/share/doc/ncbi-tools-bin/README.fa2htgs + install -m 644 sequin/README \ + debian/ncbi-tools-x11/usr/share/doc/ncbi-tools-x11/README.sequin + +override_dh_installman: + dh_link # otherwise runs too late to influence debian/installman + chmod +x debian/installman +ifneq "" "$(filter ncbi-tools-bin, $(shell dh_listpackages))" + debian/installman ncbi-cn3d + debian/installman ncbi-tools-bin + debian/installman ncbi-tools-x11 +endif +ifneq "" "$(filter ncbi-data, $(shell dh_listpackages))" + debian/installman ncbi-data +endif + dh_installman + +override_dh_makeshlibs-arch: + dh_makeshlibs -V + +override_dh_builddeb: + dh_builddeb -pncbi-rrna-data -- -Zxz -z7 -Sextreme + dh_builddeb -Nncbi-rrna-data + +.PHONY: build diff --git a/debian/sbtedit.desktop.in b/debian/sbtedit.desktop.in new file mode 100644 index 00000000..a553c789 --- /dev/null +++ b/debian/sbtedit.desktop.in @@ -0,0 +1,3 @@ +Name=GenBank Submission Template Editor +GenericName=Template Editor +Comment=Edit GenBank submission templates, as used by Sequin. diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 00000000..163aaf8d --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/source/include-binaries b/debian/source/include-binaries new file mode 100644 index 00000000..4773c5d7 --- /dev/null +++ b/debian/source/include-binaries @@ -0,0 +1,7 @@ +debian/bkgd.gif +debian/left.gif +debian/spacer10.gif +debian/tests/test-data/nc0225.aso.gz +debian/tests/test-data/dsRNA_viruses.ags.gz +debian/tests/test-data/dsRNA_viruses.gene_info.gz +debian/tests/test-data/spidey_genome.fasta.gz diff --git a/debian/source/options b/debian/source/options new file mode 100644 index 00000000..7423a2df --- /dev/null +++ b/debian/source/options @@ -0,0 +1 @@ +single-debian-patch diff --git a/debian/source/patch-header b/debian/source/patch-header new file mode 100644 index 00000000..d0dfb956 --- /dev/null +++ b/debian/source/patch-header @@ -0,0 +1 @@ +Combined patches from git. diff --git a/debian/spacer10.gif b/debian/spacer10.gif Binary files differnew file mode 100644 index 00000000..b606a217 --- /dev/null +++ b/debian/spacer10.gif diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 00000000..2d33ca5e --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: netcat, @ +Restrictions: allow-stderr diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test new file mode 100644 index 00000000..acf9916b --- /dev/null +++ b/debian/tests/run-unit-test @@ -0,0 +1,220 @@ +#!/bin/bash +set -e + +pkg="ncbi-tools-bin" + +if [ "$AUTOPKGTEST_TMP" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM +fi +cd $AUTOPKGTEST_TMP +cp -a /usr/share/doc/${pkg}/test-data/* . +cp /usr/share/doc/${pkg}/{asnpub.all.gz,medline.prt.gz} . +cp /usr/share/ncbi/data/autofix.prt . +cp /usr/share/ncbi/data/UniVec.* . +gunzip *.gz + +check_GI() +{ + while read GI; do + grep -q $GI $1 + done < $2 +} + +################################################################## +echo '---asn2asn test---' +################################################################## +/usr/bin/asn2asn -i nc0225.aso -b -o nc0225.text +[ -s nc0225.text ] +/usr/bin/asn2asn -i nc0225.text -s -o nc0225_new.aso +[ -s nc0225_new.aso ] +diff nc0225.aso nc0225_new.aso +rm nc0225.aso nc0225_new.aso + +################################################################## +echo '---asn2all test---' +################################################################## +/usr/bin/asn2all -i nc0225.text -f g -o nc0225.nuc -v nc0225.prt +[ -s nc0225.nuc ] +genes_dna="$(grep -c " mol dna ," nc0225.text)" +genes_rna="$(grep -c " mol rna ," nc0225.text)" +genes=$(expr $genes_dna + $genes_rna) +nuc="$(grep -c "^LOCUS " nc0225.nuc)" +[ $genes -eq $nuc ] +[ -s nc0225.prt ] +proteins="$(grep -c " mol aa ," nc0225.text)" +prt="$(grep -c "^LOCUS " nc0225.prt)" +[ $proteins -eq $prt ] + +################################################################## +echo '---asn2fsa test---' +################################################################## +/usr/bin/asn2fsa -i nc0225.text -a t -o nc0225.fna -v nc0225.faa +[ -s nc0225.fna ] +fna="$(grep -c "^>" nc0225.fna)" +[ $genes -eq $fna ] +[ -s nc0225.faa ] +faa="$(grep -c "^>" nc0225.faa)" +[ $proteins -eq $faa ] + +################################################################## +echo '---asn2gb test---' +################################################################## +/usr/bin/asn2gb -i nc0225.text -a t -o nc0225.gbk +[ -s nc0225.gbk ] +gbk="$(grep -c "^LOCUS " nc0225.gbk)" +[ $genes -eq $gbk ] + +################################################################## +echo '---asn2idx test---' +################################################################## +/usr/bin/asn2idx -p . -x .text < nc0225.text +[ -s nc0225.idx ] +[ -s master.idx ] +awk 'NR == 1 || NR % 50 == 0 {print $1}' nc0225.idx | sed 's/\.1//' > indexed_GIs +check_GI nc0225.text indexed_GIs + +################################################################## +echo '---asn2xml test---' +################################################################## +/usr/bin/asn2xml -i nc0225.text -b F -o nc0225.xml +[ -s nc0225.xml ] +dna_xml="$(grep -c '<Seq-inst_mol value="dna"/>' nc0225.xml)" +rna_xml="$(grep -c '<Seq-inst_mol value="rna"/>' nc0225.xml)" +proteins_xml="$(grep -c '<Seq-inst_mol value="aa"/>' nc0225.xml)" +[ $genes -eq $(expr $dna_xml + $rna_xml) ] +[ $proteins -eq $proteins_xml ] + +################################################################## +echo '---cleanasn test---' +################################################################## +/usr/bin/cleanasn -a t -D t -i nc0225.text -o nc0225_cleaned.text +[ -s nc0225_cleaned.text ] +titles="$(grep -c " title \"" nc0225.text)" +titles_to_clean="$(grep -A 1 " descr {$" nc0225.text | grep -c " title \"")" +titles_left="$(grep -c " title \"" nc0225_cleaned.text)" +[ $(expr $titles - $titles_to_clean) -eq $titles_left ] + +################################################################## +echo '---gene2xml test---' +################################################################## +/usr/bin/gene2xml -b -i dsRNA_viruses.ags -o dsRNA_viruses.xgs +[ -s dsRNA_viruses.xgs ] +# The content in dsRNA_viruses.gene_info mirrors the content in dsRNA_viruses.ags +first_id="$(awk 'NR==2{print $1}' dsRNA_viruses.gene_info)" +last_id="$(awk 'END{print $1}' dsRNA_viruses.gene_info)" +# check the beginning of the output +start_in="$(grep -c "^${first_id}" dsRNA_viruses.gene_info)" +start_out="$(grep -c "<Object-id_id>${first_id}</Object-id_id>" dsRNA_viruses.xgs)" +[ $start_in -eq $start_out ] +#check the ending of the output +end_in="$(grep -c "^${last_id}" dsRNA_viruses.gene_info)" +end_out="$(grep -c "<Object-id_id>${last_id}</Object-id_id>" dsRNA_viruses.xgs)" +[ $end_in -eq $end_out ] + +grep 'GI:' nc0225.gbk | head | sed 's/.*GI://' > GIs.txt + +if nc -z -w 1 www.ncbi.nlm.nih.gov 80; then + ################################################################## + echo '---gbseqget test---' + ################################################################## + /usr/bin/gbseqget -i GIs.txt -o gbseqget.xml + [ -s gbseqget.xml ] + check_GI gbseqget.xml GIs.txt + ################################################################## + echo '---insdseqget test---' + ################################################################## + /usr/bin/insdseqget -i GIs.txt > insdset.xml + [ -s insdset.xml ] + check_GI insdset.xml GIs.txt + ################################################################## + echo '---idfetch test---' + ################################################################## + /usr/bin/idfetch -G GIs.txt -o idfetch.text + [ -s idfetch.text ] + check_GI idfetch.text GIs.txt +fi + + +################################################################## +echo '---vecscreen test---' +################################################################## +/usr/bin/vecscreen -f 3 < nc0225.fna > vecscreen.output +[ -s vecscreen.output ] +last_in="$(grep ">" nc0225.fna | tail -1 | sed 's/>//' | sed 's/ .*//')" +last_out="$(grep ">" vecscreen.output | tail -1 | sed 's/>Vector //' | sed 's/ .*//')" +[ $last_in==$last_out ] + + +echo '---asndisc test---' +/usr/bin/asndisc -i nc0225.text -a t -o nc0225.disc +[ -s nc0225.disc ] + +echo '---asnval test---' +/usr/bin/asnval -i nc0225.text -a t -o nc0225.val -Q 2 +[ -s nc0225.val ] + +echo '---asnmacro test---' +/usr/bin/asnmacro -i nc0225.text -m autofix.prt -o asnmacro.output +[ -s asnmacro.output ] + +echo '---asntool test---' +/usr/bin/asntool -m asnpub.all -v medline.prt -e medline.val +[ -s medline.val ] + +echo '---indexpub test---' +/usr/bin/indexpub -i medline.val +[ -s medline.idx ] + +echo '---getpub test---' +/usr/bin/getpub -i medline.val -o getpub.output +[ -s getpub.output ] + +echo '---getmesh test---' +/usr/bin/getmesh -i getpub.output -o getmesh.output +[ -s getmesh.output ] + +echo '---debruijn test---' +/usr/bin/debruijn -a ncbistdaa -n 4 > debruijn.output +[ -s debruijn.output ] + +echo '---gil2bin test---' +/usr/bin/gil2bin -i GIs.txt -o GIs.bin +[ -s GIs.bin ] + +echo '---makeset test---' +echo 'idfetch_g1234.npset' > files +/usr/bin/makeset -i files -o makeset.output +[ -s makeset.output ] + +echo '---nps2gps test---' +/usr/bin/nps2gps -i idfetch_g1234.npset -o nps2gps.output +[ -s nps2gps.output ] + +echo '---tbl2asn test---' +/usr/bin/tbl2asn -t Sc_16.sbt -i Sc_16.fsa +[ -s Sc_16.sqn ] + +echo '---checksub test---' +/usr/bin/checksub -i Sc_16.sqn -o checksub.sqn +diff Sc_16.sqn checksub.sqn + +echo '---fa2htgs test---' +/usr/bin/fa2htgs -i Sc_16.fsa -t Sc_16.sqn -n "Saccharomyces cerevisiae" -g mycenter -s ABC_1234567 -o fa2htgs.output -e fa2htgs.log +[ -s fa2htgs.output ] + +echo '---subfuse test---' +/usr/bin/subfuse -p ./ -o subfuse.output +[ -s subfuse.output ] + +echo '---trna2sap test---' +/usr/bin/trna2sap < trnascan-se_sample.output > trna2sap.output +[ -s trna2sap.output ] +echo '---trna2tbl test---' +/usr/bin/trna2tbl < trnascan-se_sample.output > trna2tbl.output +[ -s trna2tbl.output ] + +echo '---spidey test---' +/usr/bin/spidey -i spidey_genome.fasta -m spidey_mRNA.fasta -p 1 -o spidey.summary +[ -s spidey.summary ] + diff --git a/debian/tests/test-data/Sc_16.fsa b/debian/tests/test-data/Sc_16.fsa new file mode 100644 index 00000000..498bda2f --- /dev/null +++ b/debian/tests/test-data/Sc_16.fsa @@ -0,0 +1,14 @@ +>Sc_16 [organism=Saccharomyces cerevisiae] +tataggcgaatcgagtatattattttttctcaacatatgtat +atgaacatgagaatatatttataggaatgtataaaattgtga +cctctcctgctattttagttactgattttatgtatgtagggg +gaataggggctgcctttcttaatgcagttttaattttttctt +ttaattttttcttagtaaaattatttaaagtaaagattaatg +gaataaccattgcgcttttttttacagtttttggtttttcat +tttttggaaaaaatattttaaatattttacctttttatttag +ggggtattttatatagtatctatacttcaacagatttttctg +aacatatagttcctattgctttttcaagtgcattagcccctt +ttgtaagcagtgttgctttttatggagaaatatcctatgaaa +catcatatataaatgcaattttaattggtattttaattggtt +ttatagtggttcctttgtctaaaagtctttatgactttcatg +agggatatgatttatataatttaggttttacagcaggtt diff --git a/debian/tests/test-data/Sc_16.sbt b/debian/tests/test-data/Sc_16.sbt new file mode 100644 index 00000000..38d5ea0c --- /dev/null +++ b/debian/tests/test-data/Sc_16.sbt @@ -0,0 +1,139 @@ +Submit-block ::= { + contact { + contact { + name name { + last "Darwin", + first "Charles", + middle "", + initials "", + suffix "", + title "" + }, + affil std { + affil "Oxbridge University", + div "Evolutionary Biology Department", + city "Camford", + country "United Kingdom", + street "1859 Tennis Court Lane", + email "darwin@beagle.edu.uk", + phone "01 44 171-007-1212", + postal-code "OX1 2BH" + } + } + }, + cit { + authors { + names std { + { + name name { + last "Darwin", + first "Charles", + middle "", + initials "C.R.", + suffix "", + title "" + } + } + }, + affil std { + affil "Oxbridge University", + div "Evolutionary Biology Department", + city "Camford", + country "United Kingdom", + street "1859 Tennis Court Lane", + postal-code "OX1 2BH" + } + } + }, + subtype new +} +Seqdesc ::= pub { + pub { + sub { + authors { + names std { + { + name ml "Darwin C", + } + }, + affil str "Evolutionary Biology Department, Oxbridge University, + Camford, 1859 Tennis Court Lane, OX1 2BH, United Kingdom." + }, + date std { + year 2018, + month 5, + day 19 + }, + }, + article { + title { + name "In-depth analysis of one mysterious hypothetical protein of + Saccharomyces cerevisiae." + }, + authors { + names std { + { + name ml "Darwin C", + affil str "Evolutionary Biology Department, Oxbridge University, + Camford, 1859 Tennis Court Lane, OX1 2BH, United Kingdom." + }, + } + }, + from journal { + title { + iso-jta "Nature", + ml-jta "Nature", + issn "1476-4687", + name "Nature" + }, + imp { + date std { + year 2018, + month 5, + day 19 + }, + language "eng", + pubstatus aheadofprint, + history { + { + pubstatus other, + date std { + year 2018, + month 5, + day 21, + hour 6, + minute 0 + } + } + } + } + }, + ids { + pubmed 87654321, + doi "10.0000/tpj.12345", + other { + db "ELocationID doi", + tag str "10.0000/tpj.12345" + } + } + } + } +} +Seqdesc ::= user { + type str "Submission", + data { + { + label str "AdditionalComment", + data str "ALT EMAIL:darwin@beagle.edu.uk" + } + } +} +Seqdesc ::= user { + type str "Submission", + data { + { + label str "AdditionalComment", + data str "Submission Title:None" + } + } +} diff --git a/debian/tests/test-data/Sc_16.tbl b/debian/tests/test-data/Sc_16.tbl new file mode 100644 index 00000000..a526a189 --- /dev/null +++ b/debian/tests/test-data/Sc_16.tbl @@ -0,0 +1,6 @@ +>Feature Sc_16 Table1 +69 543 gene + gene sde3p +69 >543 CDS + product SDE3P + protein_id WS1030 diff --git a/debian/tests/test-data/dsRNA_viruses.ags.gz b/debian/tests/test-data/dsRNA_viruses.ags.gz Binary files differnew file mode 100644 index 00000000..2057d54d --- /dev/null +++ b/debian/tests/test-data/dsRNA_viruses.ags.gz diff --git a/debian/tests/test-data/dsRNA_viruses.gene_info.gz b/debian/tests/test-data/dsRNA_viruses.gene_info.gz Binary files differnew file mode 100644 index 00000000..649cad09 --- /dev/null +++ b/debian/tests/test-data/dsRNA_viruses.gene_info.gz diff --git a/debian/tests/test-data/idfetch_g1234.npset b/debian/tests/test-data/idfetch_g1234.npset new file mode 100644 index 00000000..b06221de --- /dev/null +++ b/debian/tests/test-data/idfetch_g1234.npset @@ -0,0 +1,457 @@ +Seq-entry ::= set { + level 1 , + class nuc-prot , + descr { + source { + org { + taxname "Ovis aries" , + common "sheep" , + db { + { + db "taxon" , + tag + id 9940 } } , + orgname { + name + binomial { + genus "Ovis" , + species "aries" } , + mod { + { + subtype strain , + subname "domestic" } } , + lineage "Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; + Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; + Ruminantia; Pecora; Bovidae; Caprinae; Ovis" , + gcode 1 , + mgcode 2 , + div "MAM" } } , + subtype { + { + subtype other , + name "Allele: C4-2H.1" } } } , + pub { + pub { + sub { + authors { + names + std { + { + name + name { + last "Ren" , + initials "X." } } } , + affil + str "X. Ren, The MRC Immunochemistry Unit, Dept of Biochemistry, + University of Oxford, South Parks Road, Oxford OX1 3QU, UK" } , + medium other , + date + std { + year 1992 , + month 6 , + day 22 } } } } , + pub { + pub { + pmid 8423050 , + article { + title { + name "The thioester and isotypic sites of complement component C4 + in sheep and cattle." } , + authors { + names + std { + { + name + name { + last "Ren" , + initials "X.D." } } , + { + name + name { + last "Dodds" , + initials "A.W." } } , + { + name + name { + last "Law" , + initials "S.K." } } } , + affil + str "Department of Biochemistry, University of Oxford, UK." } , + from + journal { + title { + iso-jta "Immunogenetics" , + ml-jta "Immunogenetics" , + issn "0093-7711" , + name "Immunogenetics" } , + imp { + date + std { + year 1993 } , + volume "37" , + issue "2" , + pages "120-128" , + language "eng" , + pubstatus ppublish , + history { + { + pubstatus pubmed , + date + std { + year 1993 , + month 1 , + day 1 } } , + { + pubstatus medline , + date + std { + year 1993 , + month 1 , + day 1 , + hour 0 , + minute 1 } } , + { + pubstatus other , + date + std { + year 1993 , + month 1 , + day 1 , + hour 0 , + minute 0 } } } } } , + ids { + doi "10.1007/BF00216835" , + pubmed 8423050 } } } } , + comment "See also X66994-99" , + update-date + std { + year 2016 , + month 7 , + day 14 } } , + seq-set { + seq { + id { + embl { + accession "X66994" , + version 1 } , + gi 1234 } , + descr { + title "O.aries (C4-2H.1) C4 gene" , + molinfo { + biomol genomic } , + embl { + div mam , + creation-date + std { + year 1992 , + month 7 , + day 10 } , + update-date + std { + year 2006 , + month 11 , + day 14 } , + keywords { + "complement component" , + "complement component C4" } } , + create-date + std { + year 1992 , + month 7 , + day 10 } } , + inst { + repr raw , + mol dna , + length 945 , + seq-data + ncbi2na '50A79AA040538577E9D411E9E7D59C5E8421624BA25E7955E214285996E +8DD35202BDE2E49A624A2EA94A22A4BC3A09EA497ABAD224A8222392D54BA00AAF17FD45ECEBB8 +5D2793F5FD429C4668D4A0FD80088EBD73AA7EBC4DA84B245EB8BFA28BB5EAEEEA2A94AFEB8492 +25273CEA2240CA1592CFAD53B91ECBB7229CD509CE5FDDD7729D1A5FEE78231E2FE9528D2BA9A7 +71C009C4A21253BA79FD5241A8E3A74F51855ED7BCD44A8CE4ACE89EA29EA52A9128AA22D15E55 +D9476EBE79E79E70B6F12DBB5077B9855321A49514A759ED5EABDD4A42047A2EAF94FD7DD43939 +0BBFDE547D052A29F2EA098C0'H } , + annot { + { + data + ftable { + { + data + rna { + type mRNA } , + partial TRUE , + location + mix { + int { + from 0 , + to 133 , + id + gi 1234 , + fuzz-from + lim lt } , + int { + from 298 , + to 373 , + id + gi 1234 } , + int { + from 530 , + to 686 , + id + gi 1234 } , + int { + from 924 , + to 944 , + id + gi 1234 , + fuzz-to + lim gt } } } , + { + data + imp { + key "exon" } , + partial TRUE , + location + int { + from 0 , + to 133 , + id + gi 1234 , + fuzz-from + lim lt } , + qual { + { + qual "number" , + val "24" } } } , + { + data + imp { + key "misc_feature" } , + comment "thioester site" , + location + int { + from 7 , + to 18 , + id + gi 1234 } } , + { + data + imp { + key "intron" } , + location + int { + from 134 , + to 297 , + id + gi 1234 } , + qual { + { + qual "number" , + val "24" } } } , + { + data + imp { + key "exon" } , + location + int { + from 298 , + to 373 , + id + gi 1234 } , + qual { + { + qual "number" , + val "25" } } } , + { + data + imp { + key "intron" } , + location + int { + from 374 , + to 529 , + id + gi 1234 } , + qual { + { + qual "number" , + val "25" } } } , + { + data + imp { + key "exon" } , + location + int { + from 530 , + to 686 , + id + gi 1234 } , + qual { + { + qual "number" , + val "26" } } } , + { + data + imp { + key "misc_feature" } , + comment "isotypic site" , + location + int { + from 657 , + to 674 , + id + gi 1234 } } , + { + data + imp { + key "intron" } , + location + int { + from 687 , + to 923 , + id + gi 1234 } , + qual { + { + qual "number" , + val "26" } } } , + { + data + imp { + key "exon" } , + partial TRUE , + location + int { + from 924 , + to 944 , + id + gi 1234 , + fuzz-to + lim gt } , + qual { + { + qual "number" , + val "27" } } } , + { + data + gene { + locus "C4" } , + partial TRUE , + location + int { + from 0 , + to 944 , + id + gi 1234 , + fuzz-from + lim lt , + fuzz-to + lim gt } } } } } } , + seq { + id { + embl { + accession "CAA47393" , + version 1 } , + gi 1235 } , + descr { + title "complement component C4, partial [Ovis aries]" , + molinfo { + biomol peptide , + completeness no-ends } , + create-date + std { + year 1992 , + month 7 , + day 10 } } , + inst { + repr raw , + mol aa , + length 129 , + seq-data + ncbieaa "QGCGEQTMTLLAPTLAASRYLDKTEQWSLLPPETKDRAVDLIQKGYTRIQEFRKRDGSY +GAWLHRDSSTWLTAFVLKILSLAQDQVGGSTKKLQETAMWLLSQQRDDGSFHDPCPVIHRDMQGGLVGSD" } , + annot { + { + data + ftable { + { + data + prot { + name { + "complement component C4" } } , + partial TRUE , + location + int { + from 0 , + to 128 , + id + gi 1235 , + fuzz-from + lim lt , + fuzz-to + lim gt } } } } } } } , + annot { + { + data + ftable { + { + data + cdregion { + frame two , + code { + id 1 } } , + partial TRUE , + product + whole + gi 1235 , + location + mix { + int { + from 0 , + to 133 , + id + gi 1234 , + fuzz-from + lim lt } , + int { + from 298 , + to 373 , + id + gi 1234 } , + int { + from 530 , + to 686 , + id + gi 1234 } , + int { + from 924 , + to 944 , + id + gi 1234 , + fuzz-to + lim gt } } , + dbxref { + { + db "GOA" , + tag + str "Q29410" } , + { + db "HSSP" , + tag + str "1HZF" } , + { + db "InterPro" , + tag + str "IPR008930" } , + { + db "InterPro" , + tag + str "IPR011626" } , + { + db "InterPro" , + tag + str "IPR019565" } , + { + db "UniProtKB/TrEMBL" , + tag + str "Q29410" } } } } } } } diff --git a/debian/tests/test-data/nc0225.aso.gz b/debian/tests/test-data/nc0225.aso.gz Binary files differnew file mode 100644 index 00000000..3cccaa53 --- /dev/null +++ b/debian/tests/test-data/nc0225.aso.gz diff --git a/debian/tests/test-data/spidey_genome.fasta.gz b/debian/tests/test-data/spidey_genome.fasta.gz Binary files differnew file mode 100644 index 00000000..b03928ad --- /dev/null +++ b/debian/tests/test-data/spidey_genome.fasta.gz diff --git a/debian/tests/test-data/spidey_mRNA.fasta b/debian/tests/test-data/spidey_mRNA.fasta new file mode 100644 index 00000000..39d3e71b --- /dev/null +++ b/debian/tests/test-data/spidey_mRNA.fasta @@ -0,0 +1,83 @@ +>gi|1327850419|ref|NM_017660.4| Homo sapiens GATA zinc finger domain containing 2A (GATAD2A), transcript variant 2, mRNA +CTAGCAACCGGGGAAGCCGGGCTGTGAAGCGGGCAATTTCAGTGTGAGACTGAGCCGCGAGACTGAGCTG +CGGCTCCGAGCGCTGCGCGGCGGCTCCTCCCGCCCAGGGTCAGCGCCCCGGCGCGCGCACGCGCACCCCC +GCCGCCCGAGCGCGCCCCGCGCCGCCCGCGCAGTCGGTCGGTCGGTCGTCTGTCCTGTCGCCGCTGCCGC +CGCCGCCACAGCGGCCGCCGCGGGCGCCACCTGAGGGAGTCGCCTCCGCGGGACGCCACAAGACCTGACC +GGACTGCGCCGCCCGAGGCCGTCGGCCGCCGTCAGCGAGGGCGCCGAGCAACTTCGTTCAGAATGACCGA +AGAAGCATGCCGAACACGGAGTCAGAAACGAGCGCTTGAACGGGACCCAACAGAGGACGATGTGGAGAGC +AAGAAAATAAAAATGGAGAGAGGATTGTTGGCTTCAGATTTAAACACTGACGGAGACATGAGGGTGACAC +CTGAGCCGGGAGCAGGTCCAACCCAAGGATTGCTGAGGGCAACAGAGGCCACGGCCATGGCCATGGGCAG +AGGCGAAGGGCTGGTGGGCGATGGGCCCGTGGACATGCGCACCTCACACAGTGACATGAAGTCCGAGAGG +AGACCCCCCTCACCTGACGTGATTGTGCTCTCCGACAACGAGCAGCCCTCGAGCCCGAGAGTGAATGGGC +TGACCACGGTGGCCTTGAAGGAGACTAGCACCGAGGCCCTCATGAAAAGCAGTCCTGAAGAACGAGAAAG +GATGATCAAGCAGCTGAAGGAAGAATTGAGGTTAGAAGAAGCAAAACTCGTGTTGTTGAAAAAGTTGCGG +CAGAGTCAAATACAAAAGGAAGCCACCGCCCAGAAGCCCACAGGTTCTGTTGGGAGCACCGTGACCACCC +CTCCCCCGCTTGTTCGGGGCACTCAGAACATTCCTGCTGGCAAGCCATCACTCCAGACCTCTTCAGCTCG +GATGCCCGGCAGTGTCATACCCCCGCCCCTGGTCCGAGGTGGGCAGCAGGCGTCCTCGAAGCTGGGGCCA +CAGGCGAGCTCACAGGTCGTCATGCCCCCACTCGTCAGGGGGGCTCAGCAAATCCACAGCATTAGGCAAC +ATTCCAGCACAGGGCCACCGCCCCTCCTCCTGGCCCCCCGGGCGTCGGTGCCCAGTGTGCAGATTCAGGG +ACAGAGGATCATCCAGCAGGGCCTCATCCGCGTCGCCAATGTTCCCAACACCAGCCTGCTCGTCAACATC +CCACAGCCCACCCCAGCATCACTGAAGGGGACAACAGCCACCTCCGCTCAGGCCAACTCCACCCCCACTA +GTGTGGCCTCTGTGGTCACCTCTGCCGAGTCTCCAGCAAGCCGACAGGCGGCCGCCAAGCTGGCGCTGCG +CAAACAGCTGGAGAAGACGCTACTCGAGATCCCCCCACCCAAGCCCCCAGCCCCAGAGATGAACTTCCTG +CCCAGCGCCGCCAACAACGAGTTCATCTACCTGGTCGGCCTGGAGGAGGTGGTGCAGAACCTACTGGAGA +CACAAGGCAGGATGTCGGCCGCCACTGTGCTGTCCCGGGAGCCCTACATGTGTGCACAGTGCAAGACGGA +CTTCACGTGCCGCTGGCGGGAGGAGAAGAGCGGCGCCATCATGTGTGAGAACTGCATGACAACCAACCAG +AAGAAGGCGCTCAAGGTGGAGCACACCAGCCGGCTGAAGGCCGCCTTTGTGAAGGCGCTGCAGCAGGAAC +AGGAGATTGAGCAGCGGCTCCTGCAGCAGGGCACGGCCCCTGCACAGGCCAAGGCCGAGCCCACCGCTGC +CCCACACCCCGTGCTGAAGCAGGTCATAAAACCCCGGCGTAAGTTGGCGTTCCGCTCAGGAGAGGCCCGC +GACTGGAGTAACGGGGCTGTGCTACAGGCCTCCAGCCAGCTGTCCCGGGGTTCGGCCACGACGCCCCGAG +GTGTCCTGCACACGTTCAGTCCGTCACCCAAACTGCAGAACTCAGCCTCGGCCACAGCCCTGGTCAGCAG +GACCGGCAGACATTCTGAGAGAACCGTGAGCGCCGGCAAGGGCAGCGCCACCTCCAACTGGAAGAAGACG +CCCCTCAGCACAGGCGGGACCCTTGCGTTTGTCAGCCCAAGCCTGGCGGTGCACAAGAGCTCCTCGGCCG +TGGACCGCCAGCGAGAGTACCTCCTGGACATGATCCCACCCCGCTCCATCCCCCAGTCAGCCACGTGGAA +ATAGTGCGAGCCAGGCCCCGTGGAAGACGGGCTCCCTCCTCCCCCACCTGGCCCCTGGTCTAGAAGGACC +CACTGCACCACCCTCCGCTGGCTCGGGAAGACACCGTGCCCGCCCCAAGAGCAAGCACCGGCCATGCTGC +AGAGGCAAGACCTCAATTCTTGGCTGCAAAGTTTCATCAGGGCTAGGGGGCTGGTGCCGCCTCATAGGCA +GACGAGGATCATCGCTGGGGGACCTTTCCCGTGGGCTTTCTTCCTTTCTCTCTTTGCCTTTAGTTTGCCC +GACACCAGCAGAAAAGTGGACCTTGGGGGCTGGTTCTGCTCCTGGCCCCCTTGTTCAGCCCCTGCCGGCA +CACGGGCGGCTCACCCTGGACACTGTGATGCGCATGGGCAAGGCCAGCGCCCGGGGCTTCTGAACCGAGC +GGGGTGTTTCATTTTTTTGCTTTTCCCTGTCTTAGGCTCCCAGTCTTTGACTGCCTTCCCATGGCGATCT +ATAAGTTGAAAGATTTTTTTTTTTTTTAATCACCTCATGATGATGGAGTTAAAAGTAAACCGTGCAGACC +CTGGGGTCCCTGTTGTACGCTGCATCATCCCGCTGGCCCTGTGCCCTGGAGGGTGGGCGGCTCATGGTGC +CACAGCCCCTGGCAGGGACGGCCGGCCCGCCCCCGTGACTGACTGACAGATGCAGGGATGGCCGAGGCAG +CCCTCGCTCCAGCTGAACGCCTCCATTGCTGCTTGTTCTGGAGACCCCCGCCCCCGCACCTTCCAGACTT +AGCAGAAGAACAAACTGAAGAACAGACCCAGCCAGAGAAGCAGGGATTCCAGAAGCTGCCCATTAAGGGA +GAAGGAGAGGATCCGGTCGGCAGCAGCCCTGAGCAGAAAGCTGGAGGGGGGACTGTCGCGGGGTTTTTCT +GTTGTGGTTTATTTTATTAAATTTTTTCCTTTTTTCTATTCATTTCGATGGACGCAATCTTAAGCCACCC +TGGCCTTGCTCCTGGGAGGTGAGCGTGCACAGGTGTGTGCAGGTCAGGAGGTGCCGTCCAGGTGTGCGGC +GAGCCGCTGCGCACAGATGTCAGGATTTCCGTTTGGGTCTAGTTTAGAACCTGTCCTTAAACCTAGGGGT +TGCTGTCAGGATTTGCTTTCAGACTTTTTTTTTTTTTGTAATTCCCTTTAGAGTCTACAAAAATGTTTTT +AAAAGGATCAGGTCTGCTTTTAGTTTCATTTTTGTTTCTTTCCCGTCCCACTCTTTAAAAACTGGTTCCG +TGAGGAAAGGCAGAAGCCGTTCCGTGTCTCTTGCAGGCTGGGCCGGCTTCATGCCAGTGCGAGGGCGTCC +CGTGCCCACGTACATACGTATGTCTCCATGAGTTCTGGGCTCCACTGGTTCCAATTGAGCTCCAGCCCTG +GTTTTCCTACCCATGCAGTTAGGGACTTTAATTTAATTTTTTTTTTGTAGGGCCACCGCCTTCAAACACA +ACTGCTACAACATTCTAATAAAGGCTCATTTAACCCCCAGGCTCCTGTCGTGTGAATATCCTCAGTCTGT +AGGAAACTTTTTTTGACACAGCATAGAAGACCTAGTTTTGGAAAACATTATCTAATTTTTTGTTGTGCAA +ATCCCCAAATTTCTCACTAATTTTTGTTTTTTTGTGCATAACTTGGATGGGCTGAAGGAGGTGAGGACAG +ATTGGGGAAGGGTGGCTTTCATTCCAAGATCCAGGGATTTGGGGAAAAGGAAGGAATTTGATGTTTTTTG +GGGTGGGAGGGGAGGGTGTGTTTTTTACACCAAAAAAAAAAAAAAAAATCAAGAGTATGCAAGCATTTCT +ATTCCTCGCATTTTTCTGTGTGCCTGGCAAATAAATACCTGTCTCCTACGACCCTGAGCTGTTAGCCCTC +TCTGTTCCATGACAGGGGCCAGATCTTCCAGCTCCTCCCAGAAGGAGCACCCAGGCTGGCTTCTTCCCAC +TGAAAGCCCTCCCCAGCGAACCAACCTCAGTTCTATGCAGTGGCTGGGGATCAGGCATCCAGACCGAAGT +CACCTCTGCCTGCTCCAGCTTGGGTCAGCTGGGTCTGACCAGGGGGCCAGATCCGAGCCGCACCTGCCGG +CCCCCAGCCCCAGCTCCAGCTCCTGACCTCTCCCAGCCTGGCCTGGCTGTTCCTCCAGGGCTGATGGCTG +TCAACCCATCCTTGTGAGTTCATATGGACTGCTGCCCCTCGAAAGGGAGAGGGTCGGCCCCATGTCCCCA +GGGAGCATTCCATCAGGGACAACGTACATACTGTGATGTAAACTTTTTTTTTTTCCCCCCAGGGGGCAAA +AGTGTGAGATGCCTTAATCTTTCCTTCATTTCTGCTGTCTCGAACACTCTAGCCCATTATTTCCTTTCAG +TTCCTTGCAGCATAACCTCTACGATAAGCCCCAAGCGGGTTGTTGTATTATGACGTTTATGATGTTCCAG +GTGAAGGCATTATTAAGTACCTCTCTGGGTGTGGGGTTTGGACGCACCAGGATAGCTATTGATTAATGTT +AAGGGTGTTCTACCCACAGCAAAGCACACCCTCTTAAACCAGGCACTGCCTGGGTCCTGGTCCCGAGAGC +CCTACCAGGATCAGGTTCCTGCAAGCCGTCAGAATGTGGGAGCCCCCAGCCCAACTGATTGTAACTGTCC +CCTGTTACCTGTGACATGAACCTCCAACAGCACCTGGAAACGGTTCCCTCTGTCAGCTGCTCTGTAGACA +GGGCTGGGGAGATCTCAGAGTTCACACCTCGCCTGTTGTAGGGGAGGTTGGGGGTAGGGTTTGGAATGGC +CAAGTGCCCTTGGAACCTCCCACAGCTATGGCCGTCCTGACCTCATCCCAGGAACTCTACGGTGACCAGG +AACCACCCCTCTGACGAGGTCTGTAGCGGCCCTTCTCAGAGTGGAACAGCCCACAGTGCTAGTTGTGCCT +GGTCTTACCTGTACTCCACGGACCTCGGTGAAGCAAAAGCTTCAGGGCAGAGGGAATGAGGCAACCCAGT +GGCAGCCCCGCTGGGCCCCGTGGCTCCTGCTCTCCTATTGGACGTAGAGGCAGGGGAGAGACTTCTCTAT +ACAAATATTCTCATCACAGAAGGGATGATCCTTGCTGCTCTGCCGTAGGGTTTTTGATGCTGAGCTATGC +TGCACATGACGTTAACCTAAAGAACTTGGACTGAGCTTTTAAAAAAGGACAGCAAACAATTTTATAATCC +TTAAAGTGTAATAGACGGTTACACTAGTGCAGGGTATTGGGGAGGCTCTTTGGGTGTGGAGGCTGTCACT +TGTATTTATTGTGACTCTAAATCTTTGATAGTAAAACAAATGTAAAAAGAAATGTTTGCCACCAGATGGG +AATAGAAGTTCCAATAAGCAGGCTGGAATGGGTGGCTATACGTTGTATCACGAGGAAGTTTTAGACTCTG +AAGGATAATAAATGGATGATGTGTCAACTGGAAAAAAAAAAAAAAAAAA diff --git a/debian/tests/test-data/trnascan-se_sample.output b/debian/tests/test-data/trnascan-se_sample.output new file mode 100644 index 00000000..d4aa35c0 --- /dev/null +++ b/debian/tests/test-data/trnascan-se_sample.output @@ -0,0 +1,49 @@ +tRNAscan-SE v.2.0 (December 2017) - scan sequences for transfer RNAs +Copyright (C) 2017 Patricia Chan and Todd Lowe + University of California Santa Cruz +Freely distributed under the GNU General Public License (GPLv3) + +------------------------------------------------------------ +Sequence file(s) to search: /usr/share/doc/trnascan-se/examples/Example1.fa +Search Mode: Eukaryotic +Results written to: trnascan-se_sample.output +Output format: Tabular +Searching with: Infernal First Pass->Infernal +Isotype-specific model scan: Yes +Covariance model: /usr/share/trnascan-se/models/TRNAinf-euk.cm + /usr/share/trnascan-se/models/TRNAinf-euk-SeC.cm +Infernal first pass cutoff score: 10 + +Temporary directory: /tmp +------------------------------------------------------------ + +Status: Phase I: Searching for tRNAs with HMM-enabled Infernal +Status: Phase I: Searching for tRNAs with HMM-enabled Infernal +Scanned seqs: 0 (at CELF22B7) +/usr/bin/cmsearch -g --mid --notrunc -T 10 /usr/share/trnascan-se/models/TRNAinf-euk.cm /tmp/tscan26061.fa > /tmp/tscan26061_fp_cm_Domain.out +/usr/bin/cmsearch -g --mid --notrunc -T 10 /usr/share/trnascan-se/models/TRNAinf-euk-SeC.cm /tmp/tscan26061.fa > /tmp/tscan26061_fp_cm_SeC.out + +1 seqs scanned, 1 seqs had at least one hit. +5 total tRNAs predicted in first pass scans +Status: Phase II: Infernal verification of candidate tRNAs detected with first-pass scan +Status: Phase II: Infernal verification of candidate tRNAs detected with first-pass scan +Scanning CELF22B7 +/usr/bin/cmsearch -g --nohmm --toponly --notrunc /usr/share/trnascan-se/models/TRNAinf-euk.cm /tmp/tscan26061.trna > /tmp/tscan26061_cm_Domain.out +/usr/bin/cmsearch -g --nohmm --toponly --notrunc /usr/share/trnascan-se/models/TRNAinf-euk-SeC.cm /tmp/tscan26061.trna > /tmp/tscan26061_cm_SeC.out +/usr/bin/cmsearch -g --toponly --notextw /usr/share/trnascan-se/models/TRNAinf-euk.cm /tmp/tscan26061.trna > /tmp/tscan26061_trunc_cm_Domain.out +/usr/bin/cmscan -g --mid --toponly --notrunc --fmt 2 --tblout /tmp/tscan26061_iso_cm.tab -o /tmp/tscan26061_iso_cm.out /usr/share/trnascan-se/models/TRNAinf-euk-iso /tmp/tscan26061.trna +CELF22B7.tRNA1-LeuCAA: Infernal type= Leu Score= 74.2 +CELF22B7.tRNA2-SerAGA: Infernal type= Ser Score= 81.6 +CELF22B7.tRNA3-PheGAA: Infernal type= Phe Score= 82.5 +CELF22B7.tRNA4-PheGAA: Infernal type= Phe Score= 82.5 +CELF22B7.tRNA5-ProCGG: Infernal type= Pro Score= 71.5 + +End Time: Tue Mar 27 23:02:00 2018 +Sequence tRNA Bounds tRNA Anti Intron Bounds Inf Hit +Name tRNA # Begin End Type Codon Begin End Score Origin Note +-------- ------ ----- ------ ---- ----- ----- ---- ------ ------ ------ +CELF22B7 1 12619 12738 Leu CAA 12657 12692 74.2 Inf +CELF22B7 2 19480 19561 Ser AGA 0 0 81.6 Inf +CELF22B7 3 26367 26439 Phe GAA 0 0 82.5 Inf +CELF22B7 4 26992 26920 Phe GAA 0 0 82.5 Inf +CELF22B7 5 23765 23694 Pro CGG 0 0 71.5 Inf diff --git a/debian/udv.desktop.in b/debian/udv.desktop.in new file mode 100644 index 00000000..ebdf34c5 --- /dev/null +++ b/debian/udv.desktop.in @@ -0,0 +1,3 @@ +Name=OneD Biological Sequence Viewer +GenericName=Sequence Viewer +Comment=View single biological sequences diff --git a/debian/upstream/metadata b/debian/upstream/metadata new file mode 100644 index 00000000..a7f64b36 --- /dev/null +++ b/debian/upstream/metadata @@ -0,0 +1,26 @@ +Reference: + - Author: > + Yanli Wang and Lewis Y. Geer and Colombe Chappey and Jonathan A. Kans and + Stephen H. Bryant and Yanli Wang and Lewis Y. Geer and Colombe Chappey and + Jonathan A. Kans and Stephen H. Bryant + Title: "Cn3D: sequence and structure views for Entrez" + Journal: Trends Biochem Sci. + Year: 2000 + Month: 6 + Volumne: 25 + Number: 6 + Pages: 300-302 + PMID: 10838572 + URL: https://linkinghub.elsevier.com/retrieve/pii/S0968-0004(00)01561-9 + DOI: 10.1016/S0968-0004(00)01561-9 + Debian-package: ncbi-cn3d +Registry: + - Name: OMICtools + Entry: OMICS_05052 + Debian-package: ncbi-cn3d + - Name: bio.tools + Entry: cn3d + Debian-package: ncbi-cn3d + - Name: SciCrunch + Entry: SCR_004861 + Debian-package: ncbi-cn3d diff --git a/debian/vibrate b/debian/vibrate new file mode 100644 index 00000000..1266d38c --- /dev/null +++ b/debian/vibrate @@ -0,0 +1,20 @@ +#!/bin/sh +if [ $# = 0 -o "x$1" = "x--help" ]; then + cat <<EOF +Usage: $0 program [arguments] + +Vibrate runs the specified program, which presumably uses the NCBI C +toolkit, with the Vibrant library preloaded. The main effect of this +preloading is that omitting arguments produces a dialog box for setting +parameters rather than a usage message. +EOF + exit 0 +fi +preload=/usr/lib/libvibrant.so.6 +if [ -n "$LD_PRELOAD" ]; then + LD_PRELOAD=$preload:$LD_PRELOAD +else + LD_PRELOAD=$preload +fi +export LD_PRELOAD +exec "$@" diff --git a/debian/watch b/debian/watch new file mode 100644 index 00000000..c2b620c6 --- /dev/null +++ b/debian/watch @@ -0,0 +1,3 @@ +version=4 +opts="passive,uversionmangle=s|^|6.1.|,downloadurlmangle=s/$/ncbi.tar.gz/" \ +http://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/ (\d{8}[a-z]*)/
\ No newline at end of file diff --git a/demo/asndisc.c b/demo/asndisc.c index 23586980..e65430e4 100644 --- a/demo/asndisc.c +++ b/demo/asndisc.c @@ -65,6 +65,7 @@ #include <objmacro.h> #include <macroapi.h> +#include <connect/ncbi_gnutls.h> #define ASNDISC_APP_VER "2.3" @@ -1264,6 +1265,8 @@ Int2 Main (void) UseLocalAsnloadDataAndErrMsg (); ErrPathReset (); + SOCK_SetupSSL(NcbiSetupGnuTls); + if (! AllObjLoad ()) { Message (MSG_FATAL, "AllObjLoad failed"); return 1; diff --git a/demo/entrez2.c b/demo/entrez2.c index af6a0f24..bd5ab4b4 100644 --- a/demo/entrez2.c +++ b/demo/entrez2.c @@ -61,6 +61,8 @@ #include <entrez2.h> +#include <connect/ncbi_gnutls.h> + #define ENTREZ_APP_VERSION "12.1" #define MAX_QUERY_FORMS 256 @@ -884,6 +886,8 @@ Int2 Main (void) UseLocalAsnloadDataAndErrMsg (); ErrPathReset (); + SOCK_SetupSSL(NcbiSetupGnuTls); + /*--------------------------------*/ /* Initialize the global settings */ /*--------------------------------*/ @@ -1026,7 +1030,7 @@ Int2 Main (void) /*--------------------------------------*/ if (useNormalServ) { - EntrezSetService ("Entrez2"); + EntrezSetService ("Entrez2s"); } else if (useTestServ) { EntrezSetService ("Entrez2Test"); } else if (useURL) { diff --git a/demo/findspl.c b/demo/findspl.c index 98d19632..e1a675af 100644 --- a/demo/findspl.c +++ b/demo/findspl.c @@ -62,6 +62,8 @@ #include <accentr.h> #include <sequtil.h> +#include <connect/ncbi_gnutls.h> + #define NUMARGS 3 Args myargs[NUMARGS] = { {"Gi number of protein","0","1","99999999",FALSE,'g',ARG_INT,0.0,0,NULL}, @@ -98,6 +100,8 @@ Int2 Main(void) FILE *ofp; FILE *ifp = NULL; + SOCK_SetupSSL(NcbiSetupGnuTls); + if ( !GetArgs("findspl", NUMARGS, myargs) ) return 1; gi = myargs[0].intvalue; diff --git a/demo/gbseqget.c b/demo/gbseqget.c index 8765c6dc..e4549ee8 100644 --- a/demo/gbseqget.c +++ b/demo/gbseqget.c @@ -54,6 +54,8 @@ #include <pmfapi.h> #include <asn2gnbp.h> +#include <connect/ncbi_gnutls.h> + static CharPtr ReadALine ( CharPtr str, size_t size, @@ -417,6 +419,8 @@ Int2 Main (void) UseLocalAsnloadDataAndErrMsg (); ErrPathReset (); + SOCK_SetupSSL(NcbiSetupGnuTls); + if (! AllObjLoad ()) { Message (MSG_FATAL, "AllObjLoad failed"); return 1; diff --git a/demo/insdseqget.c b/demo/insdseqget.c index 7ca9686f..5f03d579 100644 --- a/demo/insdseqget.c +++ b/demo/insdseqget.c @@ -55,6 +55,8 @@ #include <pmfapi.h> #include <asn2gnbp.h> +#include <connect/ncbi_gnutls.h> + #define INSDSEQGET_APP_VER "1.1" CharPtr INSDSEQGET_APPLICATION = INSDSEQGET_APP_VER; @@ -423,6 +425,8 @@ Int2 Main (void) UseLocalAsnloadDataAndErrMsg (); ErrPathReset (); + SOCK_SetupSSL(NcbiSetupGnuTls); + if (! AllObjLoad ()) { Message (MSG_FATAL, "AllObjLoad failed"); return 1; diff --git a/demo/nps2gps.c b/demo/nps2gps.c index 42411bd1..a9264f01 100644 --- a/demo/nps2gps.c +++ b/demo/nps2gps.c @@ -50,6 +50,8 @@ #include <toasn3.h> #include <pmfapi.h> +#include <connect/ncbi_gnutls.h> + #define NPS2GPSAPP_VER "3.6" CharPtr NPS2GPSAPPLICATION = NPS2GPSAPP_VER; @@ -2439,6 +2441,8 @@ Int2 Main (void) UseLocalAsnloadDataAndErrMsg (); ErrPathReset (); + SOCK_SetupSSL(NcbiSetupGnuTls); + if (! AllObjLoad ()) { Message (MSG_FATAL, "AllObjLoad failed"); return 1; diff --git a/demo/taxblast_main.c b/demo/taxblast_main.c index b4aa65c7..757550f3 100644 --- a/demo/taxblast_main.c +++ b/demo/taxblast_main.c @@ -41,6 +41,8 @@ static char const rcsid[] = "$Id: taxblast_main.c,v"; #include <objgen.h> #include <taxblast.h> +#include <connect/ncbi_gnutls.h> + #define NUMARG (sizeof(myargs)/sizeof(myargs[0])) @@ -63,6 +65,8 @@ Int2 Main (void) FILE *outfile; Char ofile[128]; + SOCK_SetupSSL(NcbiSetupGnuTls); + if (!GetArgs("txblast", NUMARG, myargs)) { return 1; } diff --git a/demo/tbl2asn.c b/demo/tbl2asn.c index 6580d026..8d5e3f1a 100644 --- a/demo/tbl2asn.c +++ b/demo/tbl2asn.c @@ -8911,10 +8911,12 @@ Int2 Main (void) return 1; } + /* if (MoreThanYearOld ()) { too_old = TRUE; Message (MSG_POST, "This copy of tbl2asn is more than a year old. Please download the current version."); } + */ /* process command line arguments */ @@ -9668,6 +9670,9 @@ Int2 Main (void) } if (tbl.other_failure) { + if (MoreThanYearOld ()) { + Message (MSG_POST, "This copy of tbl2asn is more than a year old. Please try again with the current version."); + } return 1; } diff --git a/desktop/bspview.c b/desktop/bspview.c index bb2e82a6..0597024d 100644 --- a/desktop/bspview.c +++ b/desktop/bspview.c @@ -2549,13 +2549,13 @@ NLM_EXTERN void Nlm_LaunchWebPage (Char *url) } #endif #ifdef WIN_MOTIF - argv [0] = "netscape"; + argv [0] = "sensible-browser"; argv [1] = url; argv [2] = NULL; child = fork(); if(child == 0) { - if (execvp ("netscape", argv) == -1) { - Message (MSG_POST, "Unable to launch netscape"); + if (execvp ("sensible-browser", argv) == -1) { + Message (MSG_POST, "Unable to launch browser"); exit(-1); } } diff --git a/doc/dispatcher.html b/doc/dispatcher.html index 1d6b57a3..f8af639a 100644 --- a/doc/dispatcher.html +++ b/doc/dispatcher.html @@ -9,15 +9,15 @@ --> <META NAME="keywords" CONTENT="dispatcher toolkit"> <META NAME="description" CONTENT="NCBI dispatcher"> - <link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi2.css"> + <link rel="stylesheet" href="ncbi2.css"> </head> -<body bgcolor="#FFFFFF" background="http://www.ncbi.nlm.nih.gov/corehtml/bkgd.gif" text="#000000" link="#CC6600" vlink="#CC6600"> +<body bgcolor="#FFFFFF" background="bkgd.gif" text="#000000" link="#CC6600" vlink="#CC6600"> <!-- the header --> <table border="0" width="600" cellspacing="0" cellpadding="0"> <tr> - <td width="140"><a href="http://www.ncbi.nlm.nih.gov"> <img src="http://www.ncbi.nlm.nih.gov/corehtml/left.GIF" width="130" height="45" border="0"></a></td> + <td width="140"><a href="http://www.ncbi.nlm.nih.gov"> <img src="left.gif" width="130" height="45" border="0"></a></td> <td width="360" class="head1" valign="BOTTOM"> <span class="H1">Network Configuration</span></td> <td width="100" valign="BOTTOM"></td> </tr> @@ -37,7 +37,7 @@ <table border="0" width="600" cellspacing="0" cellpadding="0"> <tr valign="TOP"> <!-- left column --> <td width="125"> - <img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.GIF" width="125" height="1" border="0"> + <img src="spacer10.gif" width="125" height="1" border="0"> <p> <a href="#Switch" class="GUTTER">The Switch</a> <p> @@ -52,7 +52,7 @@ <a href="#Addendum" class="GUTTER">Additional Info</a> </td> <!-- extra column to force things over the gif border --> - <td width="15"><img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.GIF" width="15" height="1" border="0"> </td> + <td width="15"><img src="spacer10.gif" width="15" height="1" border="0"> </td> <!-- right content column --> <td width="460"> <p> </p> diff --git a/doc/firewall.html b/doc/firewall.html index 7f9c8d86..4036210a 100644 --- a/doc/firewall.html +++ b/doc/firewall.html @@ -9,15 +9,15 @@ <META NAME="keywords" CONTENT="insert your keywords for the search engine"> <META NAME="description" CONTENT="insert the description to be displayed by the search engine. Also searched by the search engine."> --> - <link rel="stylesheet" href="http://www.ncbi.nlm.nih.gov/corehtml/ncbi2.css"> + <link rel="stylesheet" href="ncbi2.css"> </head> -<body bgcolor="#FFFFFF" background="http://www.ncbi.nlm.nih.gov/corehtml/bkgd.gif" text="#000000" link="#CC6600" vlink="#CC6600"> +<body bgcolor="#FFFFFF" background="bkgd.gif" text="#000000" link="#CC6600" vlink="#CC6600"> <!-- the header --> <table border="0" width="600" cellspacing="0" cellpadding="0"> <tr> - <td width="140"><a href="http://www.ncbi.nlm.nih.gov"> <img src="http://www.ncbi.nlm.nih.gov/corehtml/left.GIF" width="130" height="45" border="0"></a></td> + <td width="140"><a href="http://www.ncbi.nlm.nih.gov"> <img src="left.gif" width="130" height="45" border="0"></a></td> <td width="360" class="head1" valign="BOTTOM"> <span class="H1">Network Configuration</span></td> <td width="100" valign="BOTTOM"></td> </tr> @@ -37,12 +37,12 @@ <table border="0" width="600" cellspacing="0" cellpadding="0"> <tr valign="TOP"> <!-- left column --> <td width="125"> -<img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.GIF" width="125" height="1" border="0"> +<img src="spacer10.gif" width="125" height="1" border="0"> </td> <!-- extra column to force things over the gif border --> - <td width="15"><img src="http://www.ncbi.nlm.nih.gov/corehtml/spacer10.GIF" width="15" height="1" border="0"> </td> + <td width="15"><img src="spacer10.gif" width="15" height="1" border="0"> </td> <!-- right content column --> <td width="460"> <p> </p> @@ -133,7 +133,7 @@ in case the public access will eventually be enabled on this port as well. <p> To see what ports are currently on, and their status, as reported within -NCBI, please refer to the following <a href="fwd_check.cgi">Firewall Daemon Presence +NCBI, please refer to the following <a href="http://www.ncbi.nlm.nih.gov/IEB/ToolBox/NETWORK/fwd_check.cgi">Firewall Daemon Presence Check</a> page. Ports marked <b>INTERNAL</b> are solely for NCBI own use, and may be inaccessible from your site. That, however, does not affect availability of any services that NCBI provides through other (open) firewall ports. @@ -143,7 +143,7 @@ TROUBLESHOOTING: You can test whether these special ports are connectable from your host just by running simple <tt>telnet</tt> command (available on most current systems). To know which ports, at the moment, you should be trying from the list above (see the "Ports to open"), first check their status by visiting -<a href="fwd_check.cgi">Firewall Daemon Presence Check</a> link, then select any +<a href="http://www.ncbi.nlm.nih.gov/IEB/ToolBox/NETWORK/fwd_check.cgi">Firewall Daemon Presence Check</a> link, then select any up-and-running port and do the following (the example assumes port 5861 has been shown in operational state): <pre> @@ -175,7 +175,7 @@ functions of NCBI dispatching facilities. <p> There is also an auxiliary automated UNIX shell script -<a href="fwd_check.sh">fwd_check.sh</a> to check all of +<a href="../libncbi6/examples/fwd_check.sh">fwd_check.sh</a> to check all of the preset ports, and it is kept in-sync with currently configured open ports (so remember to refresh your download prior to actual use). diff --git a/doc/fwd_check.sh b/doc/fwd_check.sh index abe751c9..477b885c 100755 --- a/doc/fwd_check.sh +++ b/doc/fwd_check.sh @@ -8,7 +8,7 @@ delay_sec="$1" delay_sec=${delay_sec:="10"} netcat="`which nc 2>/dev/null`" -temp="/tmp/`basename $0`.$$.tmp" +temp=`mktemp` helper="./fwd_failure_helper.exe" test -z "$netcat" && netcat="`whereis nc | sed 's/^[^:]*://;s/ //g'`" test -z "$HTTP_NCBI_EXTERNAL" && HTTP_CAF_EXTERNAL="$HTTP_NCBI_EXTERNAL" diff --git a/doc/man/cleanasn.1 b/doc/man/cleanasn.1 index a5bd23eb..afa5c347 100644 --- a/doc/man/cleanasn.1 +++ b/doc/man/cleanasn.1 @@ -1,4 +1,4 @@ -.TH CLEANASN 1 2016-09-01 NCBI "NCBI Tools User's Manual" +.TH CLEANASN 1 2017-01-09 NCBI "NCBI Tools User's Manual" .SH NAME cleanasn \- clean up irregularities in NCBI ASN.1 objects .SH SYNOPSIS @@ -75,6 +75,10 @@ Exclude nuc\-prot sets Only segmented sequences .IP w Exclude segmented sequences +.IP x +Only segmented proteins +.IP y +Exclude segmented proteins .PD .RE .TP @@ -86,6 +90,8 @@ Sequence operations, per the flags in str: Compress .IP d Decompress +.IP l +Recalculated segmented sequence length .IP v Virtual gaps inside segmented sequence .IP s diff --git a/doc/man/taxblast.1 b/doc/man/taxblast.1 new file mode 100644 index 00000000..acdb2dc1 --- /dev/null +++ b/doc/man/taxblast.1 @@ -0,0 +1,31 @@ +.TH TAXBLAST 1 2016-12-05 NCBI "NCBI Tools User's Manual" +.SH NAME +taxblast \- annotate BLAST output with taxonomic details +.SH SYNOPSIS +.B taxblast +[\|\fB\-\fP\|] +[\|\fB\-d\fP\ \fIstr\fP\|] +\fB\-i\fP\ \fIfilename\fP +[\|\fB\-o\fP\ \fIfilename\fP\|] +[\|\fB\-p\fP\|] +.SH DESCRIPTION +\fBtaxblast\fP annotates BLAST output with taxonomic details. +.SH OPTIONS +A summary of options is included below. +.TP +\fB\-\fP +Print usage message +.TP +\fB\-d\fP\ \fIstr\fP +Database used to get SeqAnnot ASN.1 (\fBnr\fP by default) +.TP +\fB\-i\fP\ \fIfilename\fP +Input ASN.1 File (SeqAnnot) +.TP +\fB\-o\fP\ \fIfilename\fP +Output file name (stdout by default) +.TP +\fB\-p\fP +Sequence is DNA +.SH AUTHOR +The National Center for Biotechnology Information. diff --git a/make/makeall.unx b/make/makeall.unx index 0c6be27b..17eee351 100644 --- a/make/makeall.unx +++ b/make/makeall.unx @@ -1,4 +1,4 @@ -# makefile for asntool and ncbi core routines, +# -*- makefile -*- for asntool and ncbi core routines, # # $Id: makeall.unx,v 6.321 2016/12/31 22:35:10 ucko Exp $ # @@ -234,7 +234,7 @@ SRC20 = drawseq.c dotmatrx.c fea2seg.c fstyle.c smdlg1.c smdlg2.c smdlg3.c \ dlgutil1.c dlgutil2.c e2trmlst.c e2docsum.c asn2graphic.c \ medview.c bspview.c gbfview.c gphview.c gphdraw.c gxydraw.c gtrdraw.c \ seqpanel.c ingengraph.c ingenext.c ingenwin.c macrodlg.c \ - biosrc.c cdrgn.c import.c pubdesc.c seqsub.c mapgene.c prtgene.c salogif.c + biosrc.c cdrgn.c import.c pubdesc.c seqsub.c mapgene.c prtgene.c SRC45 = ddvclick.c ddvgraph.c ddvopen.c ddvpanel.c @@ -392,7 +392,7 @@ OBJ20 = drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o \ dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o \ medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o \ seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o \ - biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o salogif.o + biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o OBJ45 = ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o @@ -491,14 +491,14 @@ ln-if-absent: ../make/ln-if-absent nocopy : sources $(THR_OBJ) $(LIB1) $(LIBTLS) $(LIB2) $(LIB3) $(DLIB4) $(DLIB400) \ $(LIB5) $(DLIB20) $(DLIB45) $(LIB22) $(LIB23) $(LIBCOMPADJ) \ $(DLIB28) $(DLIB30) $(DLIB3000) \ - $(DLIB34) $(DLIB37) $(DLIB38) $(LIB50) $(LIB60) $(LIB61) $(NCBI_SHLIBS) + $(DLIB34) $(DLIB37) $(DLIB38) $(LIB60) $(LIB61) $(NCBI_SHLIBS) sources : $(SRCALL) ## To clean out the directory without removing make ## clean : - -rm -f *.[acho] + -rm -f *.[acho] *.glo .NO_PARALLEL: copy $(ULIB4) $(ULIB30) @@ -656,10 +656,12 @@ shlib.sol : cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so/"` NCBI_OTHERLIBS=$(OTHERLIBS) rm -f ../shlib/*.a -# -# Linux shared libs are built the same in the same manner as for SGI -# -shlib.lnx : shlib.sgi +shlib.lnx : + -mkdir ../shlib + -rm -f ../shlib/*.a + ln $(NCBI_LIBDIR)/*.a ../shlib + cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so.$(NCBI_VERSION_MAJOR)/"` SH1="$(CC) -o" SH2="-shared *.o" + rm -f ../shlib/*.a shlib.sgi : -mkdir ../shlib @@ -792,7 +794,7 @@ copy : cp -fp ../algo/blast/core/*.h ../include/algo/blast/core - mkdir -p ../include/algo/blast/composition_adjustment $(SRCCOPY) ../algo/blast/composition_adjustment/*.c . - $(SRCCOPY) ../algo/blast/composition_adjustment/*.h ../include +# $(SRCCOPY) ../algo/blast/composition_adjustment/*.h ../include cp -fp ../algo/blast/composition_adjustment/*.h \ ../include/algo/blast/composition_adjustment - mkdir -p ../include/algo/blast/api diff --git a/make/makedemo.unx b/make/makedemo.unx index 3d187c94..b354981b 100644 --- a/make/makedemo.unx +++ b/make/makedemo.unx @@ -1,4 +1,4 @@ -# makefile for demo programs +# -*- makefile -*- for demo programs # # $Id: makedemo.unx,v 6.96 2016/08/31 19:05:26 ucko Exp $ # @@ -228,7 +228,8 @@ cdscan : cdscan.c # findspl findspl : findspl.c - $(CC) -o findspl $(LDFLAGS) findspl.c $(ENTREZLIBS) $(LIB2) $(LIB1) $(OTHERLIBS) + $(CC) -o findspl $(LDFLAGS) findspl.c $(ENTREZLIBS) $(LIB2) $(LIB1) \ + $(LIBTLS) $(OTHERLIBS) # errhdr diff --git a/make/makenet.unx b/make/makenet.unx index f5fb528c..a26ad1c1 100644 --- a/make/makenet.unx +++ b/make/makenet.unx @@ -1,4 +1,4 @@ -# makefile for network demo programs and network entrez +# -*- makefile -*- for network demo programs and network entrez # # $Id: makenet.unx,v 6.261 2016/08/25 15:37:04 ucko Exp $ # test, ignore @@ -330,6 +330,8 @@ OBJ46 = id2.o id2sgen.o # objects & sources needed for versions of network demo programs +OBJCN3D = cn3dmain.o + OBJDDV = ddvmain.o OBJUDV = udvmain.o @@ -445,10 +447,12 @@ shlib.sol : cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so/"` NCBI_OTHERLIBS=$(OTHERLIBS) rm -f ../shlib/*.a -# -# Linux shared libs are built the same in the same manner as for SGI -# -shlib.lnx : shlib.sgi +shlib.lnx : + -mkdir ../shlib + -rm -f ../shlib/*.a + ln $(NCBI_LIBDIR)/*.a ../shlib + cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so.$(NCBI_VERSION_MAJOR)/"` SH1="$(CC) -o" SH2="-shared *.o" + rm -f ../shlib/*.a shlib.sgi : -mkdir ../shlib @@ -518,7 +522,7 @@ copy : $(SRCCOPY) ../network/vibnet/*.h ../include $(SRCCOPY) ../cdromlib/*.h ../include -$(SRCCOPY) ../network/wwwblast/Src/*.c . - -$(SRCCOPY) ../network/wwwblast/Src/*.h ../include +# -$(SRCCOPY) ../network/wwwblast/Src/*.h ../include $(SRCCOPY) ../cdromlib/accentr.c . $(SRCCOPY) ../cdromlib/accutils.c . -$(SRCCOPY) ../sequin/*.* . @@ -952,6 +956,11 @@ accvdb.o : accvdb.c ## +Cn3D : $(OBJCN3D) $(BENTREZLIBS) netentcf $(BLIB36) + $(CC) -o Cn3D $(LDFLAGS) $(OBJCN3D) $(LIB31) $(LIB3000) $(LIB20) \ + $(LIB45) $(LIB22) $(LIB8) $(LIB7) \ + $(LIB400) $(LIB2) $(LIB1) $(VIBLIBS) $(OGLLIBS) + ddv : $(OBJDDV) $(CC) -o ddv $(LDFLAGS) $(OBJDDV) $(LIB41) $(LIB31) $(LIB20) $(LIB61) $(LIB60) $(LIB22) $(LIB45) \ $(LIB8) $(LIB7) $(NETCLILIB) $(LIB3) $(LIB4) $(LIB23) \ @@ -1097,8 +1106,8 @@ asnval_dbx_psf.o : asnval.c # asndisc program (asndisc) asndisc : asndisc.c $(CC) -g -o asndisc $(LDFLAGS) asndisc.c $(THREAD_OBJ) $(LIB41) \ - $(NETCLILIB) $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIB1) \ - $(OTHERLIBS) $(THREAD_OTHERLIBS) + $(NETCLILIB) $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIBTLS) $(LIB1) \ + $(GNUTLS_LIBS) $(OTHERLIBS) $(THREAD_OTHERLIBS) # asndisc_psf, uses PUBSEQBioseqFetchEnable instead of PubSeqFetchEnable # should be used only internally within NCBI. @@ -1150,17 +1159,19 @@ diffshift : diffshift.c # gbseqget program (gbseqget) gbseqget : gbseqget.c $(CC) -g -o gbseqget $(LDFLAGS) gbseqget.c $(LIB41) $(NETCLILIB) \ - $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIB1) $(OTHERLIBS) + $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIBTLS) $(LIB1) \ + $(GNUTLS_LIBS) $(OTHERLIBS) # insdseqget program (insdseqget) insdseqget : insdseqget.c $(CC) -g -o insdseqget $(LDFLAGS) insdseqget.c $(LIB41) $(NETCLILIB) \ - $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIB1) $(OTHERLIBS) + $(LIB23) $(LIBCOMPADJ) $(LIB2) $(LIBTLS) $(LIB1) \ + $(GNUTLS_LIBS) $(OTHERLIBS) # nps2gps program (nps2gps) nps2gps : nps2gps.c $(CC) -g -o nps2gps $(LDFLAGS) nps2gps.c $(LIB23) $(LIBCOMPADJ) \ - $(LIB2) $(LIB1) $(OTHERLIBS) + $(LIB2) $(LIBTLS) $(LIB1) $(GNUTLS_LIBS) $(OTHERLIBS) # trna2sap program (trna2sap) trna2sap : trna2sap.c @@ -1181,7 +1192,8 @@ testent2 : testent2.c entrez2 : entrez2.c $(CC) -g -o entrez2 $(LDFLAGS) entrez2.c $(LIB41) $(LIB6) $(LIB20) \ $(LIB61) $(LIB60) $(LIB22) $(LIB23) $(LIBCOMPADJ) \ - $(LIB2) $(LIB4) $(LIB1) $(VIBLIBS) $(OTHERLIBS) + $(LIB2) $(LIB4) $(LIBTLS) $(LIB1) \ + $(GNUTLS_LIBS) $(VIBLIBS) $(OTHERLIBS) $(VIB_POST_LINK) entrez2 # demo program (spidey) @@ -1285,7 +1297,7 @@ bl2seq : bl2seq.c taxblast: taxblast_main.c $(BLIB41) $(BLIB40) $(CC) -g -o taxblast $(LDFLAGS) taxblast_main.c \ $(LIB61) $(LIB60) $(LIB36) $(LIB41) $(LIB40) $(LIB23) $(LIBCOMPADJ) \ - $(NETCLILIB) $(LIB2) $(LIB1) $(OTHERLIBS) + $(NETCLILIB) $(LIB2) $(LIBTLS) $(LIB1) $(GNUTLS_LIBS) $(OTHERLIBS) # test client for the suggest network service suggcli: suggcli.c $(BNETCLILIB) $(BLIB24) diff --git a/make/makeshlb.unx b/make/makeshlb.unx index e9829cae..b4bc4ca3 100644 --- a/make/makeshlb.unx +++ b/make/makeshlb.unx @@ -1,4 +1,4 @@ -# +# -*- makefile -*- # # $Id: makeshlb.unx,v 6.1 1999/03/18 17:31:11 beloslyu Exp $ # @@ -12,7 +12,115 @@ SH1 = ld -G -o SH2 = `lorder *.o | tsort` $(NCBI_OTHERLIBS) %.so: %.a - rm -f *.o __* + rm -f *.o *.glo __* ar x $< + case $< in \ + *OGL.a) for f in *.glo; do mv $$f `basename $$f .glo`.o; done ;; \ + esac $(SH1) $@ $(SH2) rm -f *.o __* + +so=so.$(NCBI_VERSION_MAJOR).$(NCBI_VERSION_MINOR) + +%.$(so): %.a + $(CC) -shared -Wl,-soname=$*.so.$(NCBI_VERSION_MAJOR) -o $@ \ + -Wl,--whole-archive $< -Wl,--no-whole-archive $(LDFLAGS) \ + $($*_deps) $($*_sysdeps) + +%.so.$(NCBI_VERSION_MAJOR): %.$(so) + ln -s $< $@ + ln -s $< $*.so + +# Make libncbiCacc and libncbiacc pointers to libncbiNacc, since it's +# the most useful variant in the usual (net-only) case. Do the same +# for libnetentr, and link the static version into libncbiNacc.so, due +# to a circular dependency. +libnetentr.$(so) libncbiCacc.$(so) libncbiacc.$(so): + ln -s libncbiNacc.$(so) $@ + +# Standardize on the OpenGL-enabled versions of Vibrant, since there's +# no longer any real penalty in doing so. +libvibrant.$(so): + ln -s libvibrantOGL.$(so) $@ +libncbicn3d.$(so): + ln -s libncbicn3dOGL.$(so) $@ + +libblast_deps = libblastcompadj.$(so) libncbi.$(so) +libblast_sysdeps = -lm +libblastapi_deps = libblast.$(so) libncbitool.$(so) libncbiobj.$(so) \ + libncbi.$(so) +libblastapi_sysdeps = -lm +libblastcompadj_sysdeps = -lm +libconnssl_deps = libncbi.$(so) +libconnssl_sysdeps = -lgnutls +libncbi_sysdeps = -lm +# libncbiCacc_deps = libncbicdr.$(so) libnetentr.a libnetcli.$(so) +libncbiNacc_deps = libncbicdr.$(so) libnetentr.a libnetcli.$(so) \ + libncbiobj.$(so) libncbi.$(so) +libncbiNacc_sysdeps = -lm +# libncbiacc_deps = libncbicdr.$(so) +libncbicdr_deps = libncbiobj.$(so) libncbi.$(so) +libncbiid1_deps = libncbiobj.$(so) libnetcli.$(so) libncbi.$(so) +libncbimla_deps = libncbiobj.$(so) libnetcli.$(so) libncbi.$(so) +libncbimmdb_deps = libncbiid1.$(so) libncbitool.$(so) libncbiobj.$(so) \ + libncbi.$(so) +libncbimmdb_sysdeps = -lm +libncbiobj_deps = libncbi.$(so) +libncbiobj_sysdeps = -lm +libncbitool_deps = libblastcompadj.$(so) libncbiobj.$(so) libncbi.$(so) +libncbitool_sysdeps = -lm +libncbitxc2_deps = libncbitool.$(so) libnetcli.$(so) libncbiobj.$(so) \ + libncbi.$(so) +libncbitxc2_sysdeps = -lm +libnetblast_deps = libncbitool.$(so) libnetcli.$(so) libncbiobj.$(so) \ + libncbi.$(so) +libnetcli_deps = libncbi.$(so) +# libnetentr_deps = libncbiacc.$(so) libnetcli.$(so) +libvibgif_deps = libncbi.$(so) +libvibgif_sysdeps = -lm + +libddvlib_deps = libncbidesk.$(so) libvibrantOGL.$(so) \ + libncbitool.$(so) libncbiobj.$(so) libncbi.$(so) +libncbicn3d_deps = libncbiNacc.$(so) libddvlib.$(so) libncbidesk.$(so) \ + libncbimmdb.$(so) libncbitool.$(so) libncbiobj.$(so) \ + libncbi.$(so) +libncbicn3dOGL_deps = $(libncbicn3d_deps) libvibrantOGL.$(so) +libncbicn3dOGL_sysdeps = -lm +libncbidesk_deps = libblastapi.$(so) libncbimmdb.$(so) libncbitool.$(so) \ + libvibrantOGL.$(so) libncbiobj.$(so) libncbi.$(so) +libncbidesk_sysdeps = -lm +libvibnet_deps = libncbiNacc.$(so) libncbidesk.$(so) libncbimmdb.$(so) \ + libvibrantOGL.$(so) libncbitool.$(so) \ + libncbicdr.$(so) libncbiobj.$(so) libncbi.$(so) +# libvibrant_deps = libncbi.$(so) +# libvibrant_sysdeps = $(VIBLIBS) +# for ddvcolor stuff +libvibrantOGL_deps = libncbiobj.$(so) libncbi.$(so) +libvibrantOGL_sysdeps = $(OGLLIBS) $(VIBLIBS) -lm + +# XXX - is there a way to express these programmatically? +libblast.$(so): $(libblast_deps) +libblastapi.$(so): $(libblastapi_deps) +libconnssl.$(so): $(libconnssl_deps) +# libncbiCacc.$(so): $(libncbiCacc_deps) +libncbiNacc.$(so): $(libncbiNacc_deps) +# libncbiacc.$(so): $(libncbiacc_deps) +libncbicdr.$(so): $(libncbicdr_deps) +libncbiid1.$(so): $(libncbiid1_deps) +libncbimla.$(so): $(libncbimla_deps) +libncbimmdb.$(so): $(libncbimmdb_deps) +libncbiobj.$(so): $(libncbiobj_deps) +libncbitool.$(so): $(libncbitool_deps) +libncbitxc2.$(so): $(libncbitxc2_deps) +libnetblast.$(so): $(libnetblast_deps) +libnetcli.$(so): $(libnetcli_deps) +# libnetentr.$(so): $(libnetentr_deps) + +libddvlib.$(so): $(libddvlib_deps) +# libncbicn3d.$(so): $(libncbicn3d_deps) +libncbicn3dOGL.$(so): $(libncbicn3dOGL_deps) +libncbidesk.$(so): $(libncbidesk_deps) +libvibgif.$(so): $(libvibgif_deps) +libvibnet.$(so): $(libvibnet_deps) +# libvibrant.$(so): $(libvibrant_deps) +libvibrantOGL.$(so): $(libvibrantOGL_deps) diff --git a/tools/readdb.c b/tools/readdb.c index 4989fdbb..26226bf8 100644 --- a/tools/readdb.c +++ b/tools/readdb.c @@ -10167,7 +10167,10 @@ static Int2 FDBFinish (FormatDBPtr fdbp) return 1; MemSet(dateTime, 0, DATETIME_LENGTH); - Nlm_DayTimeStr(dateTime, TRUE, TRUE); + /* SOURCE_DATE_EPOCH specification: "If the value is malformed, the + build process SHOULD exit with a non-zero error code." */ + if (!Nlm_DayTimeStr(dateTime, TRUE, TRUE)) + return 1; /* write db_title and date-time stamp eigth bytes aligned */ tmp = title_len + StringLen(dateTime); diff --git a/vibrant/netscape.c b/vibrant/netscape.c index 79443d3b..2e9545e1 100644 --- a/vibrant/netscape.c +++ b/vibrant/netscape.c @@ -548,9 +548,8 @@ static Boolean NS_LoadNetscape(const char *url) } /* ---------- child process ------------ */ - if (execlp("netscape", "netscape", url, NULL) < 0 && - execl(NETSCAPE_PATH, NETSCAPE_PATH, url, NULL) < 0) { - Message(MSG_ERROR, "Failure to open URL in netscape window"); + if (execlp("sensible-browser", "sensible-browser", url, NULL) < 0) { + Message(MSG_ERROR, "Failure to open URL in browser window"); exit(1); } diff --git a/vibrant/shim3d.c b/vibrant/shim3d.c index 8a5abe72..5a291297 100644 --- a/vibrant/shim3d.c +++ b/vibrant/shim3d.c @@ -321,6 +321,7 @@ #ifdef _PNG #include <png.h> /* must go berore ncbi headers */ +#include <zlib.h> #ifndef png_jmpbuf #define png_jmpbuf(x) ((x)->jmpbuf) #endif @@ -339,7 +340,8 @@ NLM_EXTERN void LIBCALL Nlm_HeapSort PROTO((VoidPtr base, size_t nel, size_t wid #include <ddvcolor.h> #if defined(_OPENGL) && defined(_PNG) -TOGL_Data *Cn3D_GetCurrentOGLData(void); /* in cn3dxprt.c */ +/* In cn3dxprt.c; declared weak here to avoid dependency loops. */ +extern TOGL_Data *Cn3D_GetCurrentOGLData(void) __attribute__((weak)); #endif @@ -2939,7 +2941,15 @@ void Nlm_SaveImagePNG(Nlm_Char *fname) png_structp png_ptr = NULL; png_infop info_ptr = NULL; Nlm_Boolean doInterlacing = TRUE; - TOGL_Data *OGL_Data = (TOGL_Data *)(Cn3D_GetCurrentOGLData()); + TOGL_Data *OGL_Data; + + if (!Cn3D_GetCurrentOGLData) { + Message(MSG_ERROR, "PNG output unavailable; " + "please relink application with -lncbicn3d."); + return; + } + + OGL_Data = (TOGL_Data *)(Cn3D_GetCurrentOGLData()); #if defined(WIN_MOTIF) GLint glSize; @@ -3720,4 +3730,3 @@ void Nlm_AddHalfWorm3D(Nlm_Picture3D pic, if (fblock) MemFree(fblock); } - diff --git a/vibrant/vibmain.c b/vibrant/vibmain.c index 3c5bd9ad..1d010ee3 100644 --- a/vibrant/vibmain.c +++ b/vibrant/vibmain.c @@ -44,6 +44,21 @@ +extern Nlm_Int2 Nlm_Main(void) __attribute__((weak)); + +static Nlm_Int2 s_CallNlmMain(void) +{ + if (Nlm_Main) { + return Nlm_Main(); + } else { + ErrPost(0, 0, "Neither main nor Nlm_Main defined by program."); + return -1; + } +} + +#define Nlm_Main s_CallNlmMain + + #ifdef WIN_MAC #ifdef OS_UNIX_DARWIN int main (int argc, char *argv[]) diff --git a/vibrant/vibwndws.c b/vibrant/vibwndws.c index c0f5109b..0b61810d 100644 --- a/vibrant/vibwndws.c +++ b/vibrant/vibwndws.c @@ -6818,7 +6818,7 @@ extern void Nlm_VibMainPrelude (int argc, char *argv[]) Nlm_InitPrompt (); Nlm_InitSlate (); Nlm_InitTexts (); - if (! Nlm_SetupWindows ()) return; + if (! Nlm_SetupWindows ()) exit(1); Nlm_RegisterWindows (); Nlm_RegisterTexts (); Nlm_RegisterSlates (); |
