#	makefile for flat2asn
#
#	$Id: makeindx.unx,v 6.6 2008/01/25 19:56:25 ucko Exp $
#
#	Sun with unbundled ANSI compiler [ make LCL=acc RAN=ranlib CC=acc ]
#	Sun with Gnu C [ make LCL=gcc RAN=ranlib CC=gcc ]
#   Sun with Solaris 2.x OS [ make LCL=sol CC="cc -Xa" ]
#	Silicon Graphics [ make LCL=sgi OTHERLIBS="-lm -lPW -lsun" ]
#	IBM 3090 with AIX [ make LCL=370 ]
#	ULTRIX [ make LCL=ult RAN=ranlib ]
#	Apple AUX [ make LCL=aux SHELL=\usr\bin ]
#	NeXt [ make LCL=nxt CFLAGS1="-c -ansi" RAN=ranlib ]
#	DEC Alpha under OSF/1  [ make LCL=alf CC=cc RAN=ranlib ]
#   BeOS [  make OTHERLIBS="" ]
#
#   see README for other supported systems
#	
#	Subsequent makes should make ... nocopy instead of make ... all
#	to avoid recopying the include files
#
#
#   NOTE: some make utilities (like SGI and IBM 3090) do not like a target
#     which is undefined.  This would be $(LIB4) if you are not making a
#     vibrant version.  Thus, this library target must be deleted on those
#     systems.  The section to be deleted is marked below with DELETE
#

# default flags for compiling and loading

include $(NCBI)/ncbi.mk
SUFFIXLCL = $(LCL)
CFLAGS1 = $(NCBI_CFLAGS1)
LDFLAGS1 = $(NCBI_LDFLAGS1)
CC = cc
RAN = ls -l
AR=ar
LIBPATH = -L$(NCBI_ALTLIB)  -L$(NCBI_SYBASE)/lib
OTHERLIBS = $(LIBPATH) -lncbimla -lncbitax -lnetentr -lnetcli -lncbiobj -lncbi $(NCBI_SYBLIBS) $(NCBI_OTHERLIBS)

SUFFIXENV = unx
ASNDIR = asnstat
LIBPARSE = libindx.a


CFLAGS = $(CFLAGS1) -I../include -I$(NCBI_INCDIR) 
LDFLAGS = $(LDFLAGS1) -I../include -I$(NCBI_INCDIR) -L$(NCBI_LIBDIR)

SRCCOPY = cp -p

##
## some things to make
##

# sources needed for indexing and parsing

SRC_I = indx_blk.c block.c entry.c gb_index.c em_index.c \
		sp_index.c pr_index.c utilfun.c

SRC_P = add.c asci_blk.c citation.c flat2asn.c flatargs.c \
		gb_ascii.c genref.c em_ascii.c ind.c loadfeat.c \
		nucprot.c ref.c sp_global.c sp_ref.c sp_ascii.c\
		taxcash.c utilfeat.c utilref.c 

SRC_ALL = $(SRC_I) $(SRC_P)

# objects needed for indexing and parsing

OBJ_I = indx_blk.o block.o entry.o gb_index.o em_index.o \
		sp_index.o pr_index.o utilfun.o

OBJ_P = add.o asci_blk.o citation.o flat2asn.o flatargs.o \
		gb_ascii.o genref.o em_ascii.o ind.o loadfeat.o \
		nucprot.o ref.o sp_global.o sp_ref.o sp_ascii.o\
		taxcash.o utilfeat.o utilref.o 
   
## All things to make
##
all : copy .WAIT nocopy flat2asn

nocopy : sources $(LIBPARSE)

sources : $(SRC_ALL)

## To clean out the directory without removing make
##
clean :
	- rm -f *.[acho]

.NO_PARALLEL:	copy

.WAIT:
	echo Waiting...go

## Implicit actions
##


## get all the source files
##

$(SRC_ALL) : copy

copy :
	- chmod -R ug+rw,o+r .
	$(SRCCOPY) ../internal/parser/*.h ../include
	$(SRCCOPY) ../internal/parser/*.c .
	- chmod -R ug+rw,o+r .

## make libraries
##

$(LIBPARSE) : $(OBJ_I)
	- rm -f $(LIBPARSE)
	$(AR) cru $(LIBPARSE) $(OBJ_I) 
	$(SRCCOPY) $(LIBPARSE) ../lib
	$(RAN) ../lib/$(LIBPARSE)

# flat2asn

flat2asn : flat2asn.o $(OBJ_P) $(LIBPARSE)
	$(CC) -o flat2asn $(LDFLAGS) flat2asn.o $(OBJ_P) ../lib/$(LIBPARSE) $(OTHERLIBS)