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--$Id: fastadl.asn,v 6.4 2001/11/02 21:44:54 camacho Exp $
--
-- Notes:
--
-- taxonomy: an integer is proposed, which would require some sort of
-- table (or network connection) to do the conversions from integer
-- to various names. This could save quite a bit of space for databases
-- that are predominantly of one organism (e.g., human in htgs).
-- I've proposed here that table contain scientific-, common-, and
-- blast-names at the advice of Scott Federhen. Scott also was in
-- favor of having the complete lineage in the file, but it seems like
-- this would be seldom used and we could have a view with a link back
-- to the taxonomy page for anyone needing it. Since one file would
-- suffice for all blast databases, it seems like this should be a new file.
--
-- memberships: a sequence of integers is proposed. Each bit of an integer
-- would indicate membership in some (virtual) blast database (e.g., pdb,
-- swissprot) or some classification (e.g., mRNA, genomic).
--
-- links: a sequence of integers is proposed. Each bit of an integer would
-- indicate a link that could be established based upon the gi of the
-- database sequence.
--
-- $Revision: 6.4 $
--
-- $Log: fastadl.asn,v $
-- Revision 6.4 2001/11/02 21:44:54 camacho
-- Make title and taxid optional fields
--
-- Revision 6.3 2001/04/02 15:08:53 madden
-- Add other-info SEQUENCE OF INTEGER for future use
--
-- Revision 6.2 2001/03/29 19:03:40 madden
-- Minor change for consistency
--
-- Revision 6.1 2000/09/14 20:05:00 shavirin
-- Initial revision.
--
--
NCBI-BlastDL DEFINITIONS ::=
BEGIN
EXPORTS Blast-def-line-set, Blast-def-line;
IMPORTS Seq-id FROM NCBI-Seqloc;
Blast-def-line-set ::= SEQUENCE OF Blast-def-line -- all deflines for an entry
Blast-def-line ::= SEQUENCE {
title VisibleString OPTIONAL, -- simple title
seqid SEQUENCE OF Seq-id, -- Regular NCBI Seq-Id
taxid INTEGER OPTIONAL, -- taxonomy id
memberships SEQUENCE OF INTEGER OPTIONAL, -- bit arrays
links SEQUENCE OF INTEGER OPTIONAL, -- bit arrays
other-info SEQUENCE OF INTEGER OPTIONAL -- for future use (probably genomic sequences)
}
END
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