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/*****************************************************************************
* gbfeatdfn.h:
* -- GenBank Feature table define file
*
* $Log: gbftdef.h,v $
* Revision 6.25 2005/10/19 16:56:17 kans
* added new source qualifiers, expanded array of optional qualifiers
*
* Revision 6.24 2005/09/22 20:50:07 kans
* changed /experimental to /experiment - typo
*
* Revision 6.23 2005/09/19 17:17:31 kans
* removed /hydrogenosome as a separate qualifier - it is really /organelle=hydrogenosome
*
* Revision 6.22 2005/09/16 19:56:37 kans
* added hydrogenosome
*
* Revision 6.21 2005/06/15 13:47:21 kans
* corrected optional qualifier numbers, added Validate_ParFlat_GBFeat function
*
* Revision 6.20 2005/06/14 16:06:44 kans
* initial support for ribosomal_slippage, trans_splicing qualifiers derived from /exception
*
* Revision 6.19 2005/06/10 17:25:26 kans
* added space for new qualifiers experimental, inference, rpt_unit_seq, rpt_unit_range
*
* Revision 6.18 2004/08/17 15:50:52 kans
* added GBQUAL_old_locus_tag and GBQUAL_compare
*
* Revision 6.17 2003/10/07 13:50:36 kans
* added gap, operon, oriT features and ecotype, estimated_length and operon qualifiers
*
* Revision 6.16 2003/08/19 15:18:37 kans
* added GBQUAL_segment, increased ParFlat_TOTAL_GBQUAL and opt_qual array size
*
* Revision 6.15 2003/05/07 22:03:31 kans
* added GBQUAL_mol_type, raised opt_qual array to 51 elements
*
* Revision 6.14 2003/02/22 21:20:05 kans
* added GBQUAL_locus_tag, legal for now in gene features
*
* Revision 6.13 2002/04/17 14:41:08 kans
* added GBQUAL_serovar to source feature
*
* Revision 6.12 2002/03/26 16:06:30 kans
* added transgenic, environmental_sample, and isolation_source
*
* Revision 6.11 2002/02/13 18:45:52 kans
* increased ParFlat_TOTAL_GBFEAT, added snoRNA
*
* Revision 6.10 2001/04/10 22:17:03 tatiana
* GBQUAL_endogenous_virus backed off to /note
*
* Revision 6.9 2001/04/10 21:59:17 tatiana
* GBQUAL_endogenous_virus added
*
* Revision 6.8 2000/11/29 20:34:29 tatiana
* virion key removed, GBQUAL_transcript_id added
*
* Revision 6.7 2000/02/02 21:02:41 tatiana
* new type for /number added
*
* Revision 6.6 2000/01/21 21:06:44 kans
* reverted qualifiers, just added organelle, so parser can deal with old and new form during transition
*
* Revision 6.5 2000/01/21 20:48:19 kans
* changes to merge several source qualifiers under new organelle qualifier
*
* Revision 6.4 1999/02/05 15:40:39 tatiana
* GBQUAL_country added
*
* Revision 6.3 1999/01/29 16:18:58 tatiana
* protein_id qualifier added to CDS
*
* Revision 6.2 1998/04/30 21:43:11 tatiana
* *** empty log message ***
*
* Revision 6.1 1997/12/23 23:39:00 kans
* raised ParFlat_TOTAL_GBQUAL, added GBQUAL_focus and GBQUAL_specimen_voucher
*
* Revision 6.0 1997/08/25 18:05:59 madden
* Revision changed to 6.0
*
* Revision 5.7 1997/07/29 20:59:52 vakatov
* Encapsulated 'ParFlat_GBQual_names' and 'ParFlat_GBFeat'(formerly
* global) variables into access functions. Made other global variables
* be "extern" instead of "NLM_EXTERN"(i.e. local within the PC DLL).
*
* Revision 5.6 1997/06/19 18:37:59 vakatov
* [WIN32,MSVC++] Adopted for the "NCBIOBJ.LIB" DLL'ization
*
* Revision 5.5 1996/09/17 14:50:43 tatiana
* 'virion' added, number of quals increased to 50
*
* Revision 5.4 1996/08/02 16:50:30 tatiana
* a typo fixed
*
* Revision 5.3 1996/07/30 17:28:07 kans
* ParFlat_... arrays now external in header file
*
* Revision 5.2 1996/07/29 19:44:57 tatiana
* GBQual_names changed to use a structure
*
* Revision 5.1 1996/07/25 14:18:15 tatiana
* added qualifiers: allele, exception, replace
*
* Revision 4.4 1995/11/13 15:53:11 tatiana
* serotype added
*
* Revision 4.3 1995/11/08 22:58:20 tatiana
* serotype added
*
* Revision 4.2 1995/08/19 03:08:06 tatiana
* *** empty log message ***
*
* Revision 4.1 1995/08/15 22:06:29 tatiana
* db_xref added
*
* Revision 1.2 1995/05/15 21:46:05 ostell
* added Log line
*
*
* 10-14-93
******************************************************************************/
#ifndef _GBFEATDFN_
#define _GBFEATDFN_
#define GBQUAL_allele 0
#define GBQUAL_anticodon 1
#define GBQUAL_bound_moiety 2
#define GBQUAL_cell_line 3
#define GBQUAL_cell_type 4
#define GBQUAL_chromosome 5
#define GBQUAL_chloroplast 6
#define GBQUAL_chromoplast 7
#define GBQUAL_citation 8
#define GBQUAL_clone 9
#define GBQUAL_clone_lib 10
#define GBQUAL_codon 11
#define GBQUAL_codon_start 12
#define GBQUAL_cons_splice 13
#define GBQUAL_cultivar 14
#define GBQUAL_cyanelle 15
#define GBQUAL_db_xref 16
#define GBQUAL_dev_stage 17
#define GBQUAL_direction 18
#define GBQUAL_EC_number 19
#define GBQUAL_evidence 20
#define GBQUAL_exception 21
#define GBQUAL_frequency 22
#define GBQUAL_function 23
#define GBQUAL_gene 24
#define GBQUAL_gdb_xref 25
#define GBQUAL_germline 26
#define GBQUAL_haplotype 27
#define GBQUAL_insertion_seq 28
#define GBQUAL_isolate 29
#define GBQUAL_kinetoplast 30
#define GBQUAL_label 31
#define GBQUAL_lab_host 32
#define GBQUAL_map 33
#define GBQUAL_macronuclear 34
#define GBQUAL_mitochondrion 35
#define GBQUAL_mod_base 36
#define GBQUAL_note 37
#define GBQUAL_number 38
#define GBQUAL_organism 39
#define GBQUAL_partial 40
#define GBQUAL_PCR_conditions 41
#define GBQUAL_pop_variant 42
#define GBQUAL_phenotype 43
#define GBQUAL_plasmid 44
#define GBQUAL_product 45
#define GBQUAL_proviral 46
#define GBQUAL_pseudo 47
#define GBQUAL_rearranged 48
#define GBQUAL_replace 49
#define GBQUAL_rpt_family 50
#define GBQUAL_rpt_type 51
#define GBQUAL_rpt_unit 52
#define GBQUAL_sex 53
#define GBQUAL_sequenced_mol 54
#define GBQUAL_serotype 55
#define GBQUAL_specific_host 56
#define GBQUAL_standard_name 57
#define GBQUAL_strain 58
#define GBQUAL_sub_clone 59
#define GBQUAL_sub_species 60
#define GBQUAL_sub_strain 61
#define GBQUAL_tissue_lib 62
#define GBQUAL_tissue_type 63
#define GBQUAL_translation 64
#define GBQUAL_transl_except 65
#define GBQUAL_transl_table 66
#define GBQUAL_transposon 67
#define GBQUAL_usedin 68
#define GBQUAL_variety 69
#define GBQUAL_virion 70
#define GBQUAL_focus 71
#define GBQUAL_specimen_voucher 72
#define GBQUAL_protein_id 73
#define GBQUAL_country 74
#define GBQUAL_organelle 75
#define GBQUAL_transcript_id 76
#define GBQUAL_transgenic 77
#define GBQUAL_environmental_sample 78
#define GBQUAL_isolation_source 79
#define GBQUAL_serovar 80
#define GBQUAL_locus_tag 81
#define GBQUAL_mol_type 82
#define GBQUAL_segment 83
#define GBQUAL_ecotype 84
#define GBQUAL_estimated_length 85
#define GBQUAL_operon 86
#define GBQUAL_old_locus_tag 87
#define GBQUAL_compare 88
#define GBQUAL_experiment 89
#define GBQUAL_inference 90
#define GBQUAL_rpt_unit_seq 91
#define GBQUAL_rpt_unit_range 92
#define GBQUAL_ribosomal_slippage 93
#define GBQUAL_trans_splicing 94
#define GBQUAL_collected_by 95
#define GBQUAL_collection_date 96
#define GBQUAL_identified_by 97
#define GBQUAL_lat_lon 98
#define GBQUAL_PCR_primers 99
#define ParFlat_TOTAL_GBQUAL 100
#define ParFlat_TOTAL_IntOr 3
#define ParFlat_TOTAL_LRB 3
#define ParFlat_TOTAL_Exp 2
#define ParFlat_TOTAL_Rpt 7
#define ParFlat_TOTAL_GBFEAT 67
#define Class_pos_aa 1
#define Class_text 2
#define Class_bracket_int 3
#define Class_seq_aa 4
#define Class_int_or 5
#define Class_site 6
#define Class_L_R_B 7
#define Class_ecnum 8
#define Class_exper 9
#define Class_none 10
#define Class_token 11
#define Class_int 12
#define Class_rpt 13
#define Class_flabel_base 14
#define Class_flabel_dbname 15
#define Class_note 16
#define Class_number 17
#define ParFlat_Stoken_type 1
#define ParFlat_BracketInt_type 2
#define ParFlat_Integer_type 3
#define ParFlat_Number_type 4
/*********************************************************************/
typedef struct sematic_gbfeature {
CharPtr key;
Int2 mand_num;
Int2 mand_qual[5];
Int2 opt_num;
Int2 opt_qual[65];
} SematicFeat, PNTR SematicFeatPtr;
typedef struct gbfeat_name {
CharPtr name;
Uint1 gbclass;
} GbFeatName, PNTR GbFeatNamePtr;
#undef NLM_EXTERN
#ifdef NLM_IMPORT
#define NLM_EXTERN NLM_IMPORT
#else
#define NLM_EXTERN extern
#endif
NLM_EXTERN GbFeatNamePtr x_ParFlat_GBQual_names PROTO((void));
#define ParFlat_GBQual_names x_ParFlat_GBQual_names()
NLM_EXTERN SematicFeatPtr x_ParFlat_GBFeat PROTO((void));
#define ParFlat_GBFeat x_ParFlat_GBFeat()
NLM_EXTERN ValNodePtr Validate_ParFlat_GBFeat (void);
extern CharPtr ParFlat_IntOrString [ParFlat_TOTAL_IntOr];
extern CharPtr ParFlat_LRBString [ParFlat_TOTAL_LRB];
extern CharPtr ParFlat_ExpString [ParFlat_TOTAL_Exp];
extern CharPtr ParFlat_RptString [ParFlat_TOTAL_Rpt];
#undef NLM_EXTERN
#ifdef NLM_EXPORT
#define NLM_EXTERN NLM_EXPORT
#else
#define NLM_EXTERN
#endif
#endif
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