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#ifndef _UTILPUB_
#define _UTILPUB_
#include <asn.h>
#include <objall.h>
#include <objpubd.h>
#undef NLM_EXTERN
#ifdef NLM_IMPORT
#define NLM_EXTERN NLM_IMPORT
#else
#define NLM_EXTERN extern
#endif
/*------------ the structure used for Pubs ---------------*/
typedef struct pubstruct {
ValNodePtr pub;
ValNodePtr Pub;
PubdescPtr descr;
Int2 number;
BioseqPtr PNTR bsp;
Int2 bspcount;
SeqFeatPtr PNTR citfeat;
Int2 citcount;
SeqFeatPtr PNTR pubfeat;
Int2 pubcount;
Int2 start; /* type of ref: 1-descr, 2- pubfeat, 3 - citfeat */
DatePtr date; /* need for CompareByDate */
Int2 choice; /* 1 - PUB_Gen (unpublished), 2 - PUB_Sub, -1 - other */
Uint2 entityID;
Uint2 itemID;
Uint2 itemtype;
Boolean no_free;
} PubStruct, PNTR PubStructPtr;
NLM_EXTERN ValNodePtr tie_next PROTO((ValNodePtr head, ValNodePtr next));
NLM_EXTERN ValNodePtr StoreNAPubCit PROTO((ValNodePtr PubOnCit, BioseqPtr bsp, SeqFeatPtr sfp));
NLM_EXTERN ValNodePtr StorePub PROTO((BioseqPtr bsp, ValNodePtr vnp, ValNodePtr pub, SeqFeatPtr sfp, Int2 start, Uint2 entityID, Uint2 itemId, Uint2 itemtype));
NLM_EXTERN void UniquePubs PROTO((ValNodePtr PNTR vnpp));
NLM_EXTERN void FreePubStruct PROTO((PubStructPtr psp));
NLM_EXTERN Int2 SelectBestPub PROTO((ValNodePtr pub1, ValNodePtr pub2));
NLM_EXTERN ValNodePtr MinimizePub PROTO((ValNodePtr pub));
NLM_EXTERN Int2 PubLabelMatch PROTO((ValNodePtr pub1, ValNodePtr pub2));
NLM_EXTERN void FindCit PROTO((SeqEntryPtr sep, Pointer data, Int4 index, Int2 indent));
NLM_EXTERN void ChangeCitQual PROTO((SeqEntryPtr sep, Pointer data, Int4 index, Int2 indent));
NLM_EXTERN void DeleteSites PROTO((SeqEntryPtr sep, Pointer data, Int4 index, Int2 indent));
NLM_EXTERN ValNodePtr OrganizePubList PROTO((ValNodePtr vnp));
NLM_EXTERN void cleanup_pub PROTO((ValNodePtr pub));
NLM_EXTERN void EntryStripSerialNumber PROTO((SeqEntryPtr sep));
NLM_EXTERN void VnpHeapSort PROTO ((ValNodePtr PNTR vnp, int (LIBCALLBACK *compar )PROTO ((Nlm_VoidPtr, Nlm_VoidPtr ))));
NLM_EXTERN SeqFeatPtr remove_feat PROTO((SeqFeatPtr head, SeqFeatPtr x));
NLM_EXTERN SeqAnnotPtr remove_annot PROTO((SeqAnnotPtr head, SeqAnnotPtr x));
NLM_EXTERN ValNodePtr extract_node PROTO((ValNodePtr PNTR head, ValNodePtr x));
NLM_EXTERN ValNodePtr remove_node PROTO((ValNodePtr head, ValNodePtr x));
NLM_EXTERN CharPtr qvalue_extract PROTO((GBQualPtr PNTR qlist, CharPtr qual));
#undef NLM_EXTERN
#ifdef NLM_EXPORT
#define NLM_EXTERN NLM_EXPORT
#else
#define NLM_EXTERN
#endif
#endif
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