demo/delta.prt


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Seq-entry ::= set {
  level 1 ,
  class nuc-prot ,
  date
    str "15-DEC-1989" ,
  descr {
    title "A.variabilis nifD gene 5' recombination site. and translated
 products" ,
    org {
      taxname "Anabaena variabilis" } } ,
  seq-set {
    set {
      level 2 ,
      class segset ,
      descr {
        title "A.variabilis nifD gene 5' recombination site." } ,
      seq-set {
        seq {
          id {
            giim {
              id 86659 } } ,
          descr {
            title "A.variabilis nifD gene 5' recombination site." } ,
          inst {
            repr delta ,
            mol dna ,
            length 502 ,
            ext
              delta {
			  loc
                whole
                  giim {
                    id 86657 } ,
              literal { length 5, seq-data iupacna "GGGGG" },
			  loc
                whole
                  giim {
                    id 86658 } } } } ,
        set {
          level 3 ,
          class parts ,
          seq-set {
            seq {
              id {
                giim {
                  id 86657 } ,
                genbank {
                  name "ANANIFDR1" ,
                  accession "M28152" } } ,
              descr {
                title "A.variabilis nifD gene 5' recombination site." ,
                genbank {
                  source "Anabaena variabilis (strain ATCC 29413) vegetative
 cell DNA, cosmid 33D12." ,
                  keywords {
                    "nifD gene" ,
                    "nitrogenase" } } } ,
              inst {
                repr raw ,
                mol dna ,
                length 204 ,
                topology linear ,
                strand ds ,
                seq-data
                  ncbi2na '36306514D3F38E1BC597183F822F6C0270825E3F0D9F7ACF022
0B3B7D4023A77D5F5B40E477EA3C75817263AAE40ED2348C2BF41'H } ,
              annot {
                {
                  data
                    ftable {
                      {
                        data
                          imp {
                            key "misc_recomb" } ,
                        location
                          int {
                            from 152 ,
                            to 162 ,
                            id
                              giim {
                                id 86657 } ,
                            fuzz-to
                              lim tl } ,
                        qual {
                          {
                            qual "note" ,
                            val "nifD recombination site" } } } ,
                      {
                        data
                          pub {
                            pub {
                              gen {
                                cit "Journal=""Unpublished (1989) Dept. of
 Bio., TA&M, College Station, TX 77843""," ,
                                authors {
                                  names
                                    str {
                                      "Brusca,J.S." } } } } } ,
                        location
                          int {
                            from 183 ,
                            to 203 ,
							id
								giim {
									id 86657} } } ,
                      {
                        data
                          pub {
                            pub {
                              muid 89327123 ,
                              article {
                                title {
                                  name "Excision of an 11-kilobase-pair DNA
 element from within the nifD gene in Anabaena variabilis heterocysts" } ,
                                authors {
                                  names
                                    str {
                                      "Brusca,J.S." ,
                                      "Hale,M.A." ,
                                      "Carrasco,C.D." ,
                                      "Golden,J.W." } } ,
                                from
                                  journal {
                                    title {
                                      name "J. Bacteriol." } ,
                                    imp {
                                      date
                                        std {
                                          year 1989 } ,
                                      volume "171" ,
                                      pages "4138-4145" } } } } } ,
                        location
                          int {
                            from 133 ,
                            to 182 ,
							id
								giim {
									id 86657}} } } } } } ,
            seq {
              id {
                giim {
                  id 86658 } ,
                genbank {
                  name "ANANIFDR2" ,
                  accession "M28153" } } ,
              descr {
                title "A.variabilis nifD gene 3' recombination site, and xisA
 gene, 5' end." ,
                genbank {
                  source "Anabaena variabilis (strain ATCC 29413) vegetative
 cell DNA, cosmid 33D12." ,
                  keywords {
                    "nifD gene" ,
                    "nitrogenase" ,
                    "xisA gene" } ,
                  origin "About 10.7 kb after segment 1." } } ,
              inst {
                repr raw ,
                mol dna ,
                length 293 ,
                topology linear ,
                strand ds ,
                seq-data
                  ncbi2na '1FFBDD3BBDDFE79EE7E487E258801E5B6B2380BA750B79029FB
E33FB7E15E3FE4D9EEB3C9733F25C00F0EEF349010EF4D1C11E74B9013C27BE0273C0510028F1D
695F346BC61A3F9CDC0'H } ,
              annot {
                {
                  data
                    ftable {
                      {
                        data
                          imp {
                            key "misc_recomb" } ,
                        location
                          int {
                            from 249 ,
                            to 259 ,
                            id
                              giim {
                                id 86658 } ,
                            fuzz-to
                              lim tl } ,
                        qual {
                          {
                            qual "note" ,
                            val "nifD recombination site" } } } ,
                      {
                        data
                          pub {
                            pub {
                              gen {
                                cit "Journal=""Unpublished (1989) Dept. of
 Bio., TA&M, College Station, TX 77843""," ,
                                authors {
                                  names
                                    str {
                                      "Brusca,J.S." } } } } } ,
                        location
                          int {
                            from 276 ,
                            to 292 ,
							id
								giim {
									id 86658} } } ,

                      {
                        data
                          pub {
                            pub {
                              muid 89327123 ,
                              article {
                                title {
                                  name "Excision of an 11-kilobase-pair DNA
 element from within the nifD gene in Anabaena variabilis heterocysts" } ,
                                authors {
                                  names
                                    str {
                                      "Brusca,J.S." ,
                                      "Hale,M.A." ,
                                      "Carrasco,C.D." ,
                                      "Golden,J.W." } } ,
                                from
                                  journal {
                                    title {
                                      name "J. Bacteriol." } ,
                                    imp {
                                      date
                                        std {
                                          year 1989 } ,
                                      volume "171" ,
                                      pages "4138-4145" } } } } } ,
                        location
                          int {
                            from 10 ,
                            to 275 ,
							id
								giim {
									id 86658 }} } } } } } } } } } ,
    seq {
      id {
        giim {
          id 86660 } } ,
      descr {
        title "xisA peptide A (alt.)" ,
        method concept-trans } ,
      inst {
        repr raw ,
        mol aa ,
        length 44 ,
        seq-data
          iupacaa "MQNQGQDKYQQAFADLEPLSSTDGSFLGSSLQAQQQREHMRTKV" } } ,
    seq {
      id {
        giim {
          id 86661 } } ,
      descr {
        title "xisA peptide B (alt.)" ,
        method concept-trans } ,
      inst {
        repr raw ,
        mol aa ,
        length 5 ,
        seq-data
          iupacaa "MRTKV" } } } ,
  annot {
    {
      data
        ftable {
          {
            data
              cdregion {
                code {
                  id 1 } } ,
            product
              whole
                giim {
                  id 86660 } ,
            location
              int {
                from 0 ,
                to 130 ,
                strand minus ,
                id
                  giim {
                    id 86658 } ,
                fuzz-from
                  lim gt } ,
            qual {
              {
                qual "note" ,
                val "xisA peptide A (alt.)" } } } ,
          {
            data
              cdregion {
                code {
                  id 1 } } ,
            product
              whole
                giim {
                  id 86661 } ,
            location
              int {
                from 0 ,
                to 13 ,
                strand minus ,
                id
                  giim {
                    id 86658 } ,
                fuzz-from
                  lim gt } ,
            qual {
              {
                qual "note" ,
                val "xisA peptide B (alt.)" } } } } } } }