;;; ob-shell.el --- org-babel functions for shell evaluation ;; Copyright (C) 2009-2014 Free Software Foundation, Inc. ;; Author: Eric Schulte ;; Keywords: literate programming, reproducible research ;; Homepage: http://orgmode.org ;; This file is part of GNU Emacs. ;; GNU Emacs is free software: you can redistribute it and/or modify ;; it under the terms of the GNU General Public License as published by ;; the Free Software Foundation, either version 3 of the License, or ;; (at your option) any later version. ;; GNU Emacs is distributed in the hope that it will be useful, ;; but WITHOUT ANY WARRANTY; without even the implied warranty of ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ;; GNU General Public License for more details. ;; You should have received a copy of the GNU General Public License ;; along with GNU Emacs. If not, see . ;;; Commentary: ;; Org-Babel support for evaluating shell source code. ;;; Code: (require 'ob) (require 'shell) (eval-when-compile (require 'cl)) (declare-function org-babel-comint-in-buffer "ob-comint" (buffer &rest body)) (declare-function org-babel-comint-wait-for-output "ob-comint" (buffer)) (declare-function org-babel-comint-buffer-livep "ob-comint" (buffer)) (declare-function org-babel-comint-with-output "ob-comint" (meta &rest body)) (declare-function orgtbl-to-generic "org-table" (table params)) (defvar org-babel-default-header-args:shell '()) (defcustom org-babel-shell-names '("sh" "bash" "csh" "ash" "dash" "ksh" "mksh" "posh") "List of names of shell supported by babel shell code blocks." :group 'org-babel :type 'string :initialize (lambda (symbol value) (set-default symbol (second value)) (mapc (lambda (name) (eval `(defun ,(intern (concat "org-babel-execute:" name)) (body params) ,(format "Execute a block of %s commands with Babel." name) (let ((shell-file-name ,name)) (org-babel-execute:shell body params))))) (second value)))) (defun org-babel-execute:shell (body params) "Execute a block of Shell commands with Babel. This function is called by `org-babel-execute-src-block'." (let* ((session (org-babel-sh-initiate-session (cdr (assoc :session params)))) (stdin (let ((stdin (cdr (assoc :stdin params)))) (when stdin (org-babel-sh-var-to-string (org-babel-ref-resolve stdin))))) (cmdline (cdr (assoc :cmdline params))) (full-body (org-babel-expand-body:generic body params (org-babel-variable-assignments:shell params)))) (org-babel-reassemble-table (org-babel-sh-evaluate session full-body params stdin cmdline) (org-babel-pick-name (cdr (assoc :colname-names params)) (cdr (assoc :colnames params))) (org-babel-pick-name (cdr (assoc :rowname-names params)) (cdr (assoc :rownames params)))))) (defun org-babel-prep-session:shell (session params) "Prepare SESSION according to the header arguments specified in PARAMS." (let* ((session (org-babel-sh-initiate-session session)) (var-lines (org-babel-variable-assignments:shell params))) (org-babel-comint-in-buffer session (mapc (lambda (var) (insert var) (comint-send-input nil t) (org-babel-comint-wait-for-output session)) var-lines)) session)) (defun org-babel-load-session:shell (session body params) "Load BODY into SESSION." (save-window-excursion (let ((buffer (org-babel-prep-session:shell session params))) (with-current-buffer buffer (goto-char (process-mark (get-buffer-process (current-buffer)))) (insert (org-babel-chomp body))) buffer))) ;; helper functions (defun org-babel-variable-assignments:sh-generic (varname values &optional sep hline) "Returns a list of statements declaring the values as a generic variable." (format "%s=%s" varname (org-babel-sh-var-to-sh values sep hline))) (defun org-babel-variable-assignments:bash_array (varname values &optional sep hline) "Returns a list of statements declaring the values as a bash array." (format "unset %s\ndeclare -a %s=( %s )" varname varname (mapconcat (lambda (value) (org-babel-sh-var-to-sh value sep hline)) values " "))) (defun org-babel-variable-assignments:bash_assoc (varname values &optional sep hline) "Returns a list of statements declaring the values as bash associative array." (format "unset %s\ndeclare -A %s\n%s" varname varname (mapconcat (lambda (items) (format "%s[%s]=%s" varname (org-babel-sh-var-to-sh (car items) sep hline) (org-babel-sh-var-to-sh (cdr items) sep hline))) values "\n"))) (defun org-babel-variable-assignments:bash (varname values &optional sep hline) "Represents the parameters as useful Bash shell variables." (if (listp values) (if (and (listp (car values)) (= 1 (length (car values)))) (org-babel-variable-assignments:bash_array varname values sep hline) (org-babel-variable-assignments:bash_assoc varname values sep hline)) (org-babel-variable-assignments:sh-generic varname values sep hline))) (defun org-babel-variable-assignments:shell (params) "Return list of shell statements assigning the block's variables." (let ((sep (cdr (assoc :separator params))) (hline (when (string= "yes" (cdr (assoc :hlines params))) (or (cdr (assoc :hline-string params)) "hline")))) (mapcar (lambda (pair) (if (string-match "bash$" shell-file-name) (org-babel-variable-assignments:bash (car pair) (cdr pair) sep hline) (org-babel-variable-assignments:sh-generic (car pair) (cdr pair) sep hline))) (mapcar #'cdr (org-babel-get-header params :var))))) (defun org-babel-sh-var-to-sh (var &optional sep hline) "Convert an elisp value to a shell variable. Convert an elisp var into a string of shell commands specifying a var of the same value." (concat "'" (replace-regexp-in-string "'" "'\"'\"'" (org-babel-sh-var-to-string var sep hline)) "'")) (defun org-babel-sh-var-to-string (var &optional sep hline) "Convert an elisp value to a string." (let ((echo-var (lambda (v) (if (stringp v) v (format "%S" v))))) (cond ((and (listp var) (or (listp (car var)) (equal (car var) 'hline))) (orgtbl-to-generic var (list :sep (or sep "\t") :fmt echo-var :hline hline))) ((listp var) (mapconcat echo-var var "\n")) (t (funcall echo-var var))))) (defun org-babel-sh-initiate-session (&optional session params) "Initiate a session named SESSION according to PARAMS." (when (and session (not (string= session "none"))) (save-window-excursion (or (org-babel-comint-buffer-livep session) (progn (shell session) ;; Needed for Emacs 23 since the marker is initially ;; undefined and the filter functions try to use it without ;; checking. (set-marker comint-last-output-start (point)) (get-buffer (current-buffer))))))) (defvar org-babel-sh-eoe-indicator "echo 'org_babel_sh_eoe'" "String to indicate that evaluation has completed.") (defvar org-babel-sh-eoe-output "org_babel_sh_eoe" "String to indicate that evaluation has completed.") (defun org-babel-sh-evaluate (session body &optional params stdin cmdline) "Pass BODY to the Shell process in BUFFER. If RESULT-TYPE equals 'output then return a list of the outputs of the statements in BODY, if RESULT-TYPE equals 'value then return the value of the last statement in BODY." (let ((results (cond ((or stdin cmdline) ; external shell script w/STDIN (let ((script-file (org-babel-temp-file "sh-script-")) (stdin-file (org-babel-temp-file "sh-stdin-")) (shebang (cdr (assoc :shebang params))) (padline (not (string= "no" (cdr (assoc :padline params)))))) (with-temp-file script-file (when shebang (insert (concat shebang "\n"))) (when padline (insert "\n")) (insert body)) (set-file-modes script-file #o755) (with-temp-file stdin-file (insert (or stdin ""))) (with-temp-buffer (call-process-shell-command (concat (if shebang script-file (format "%s %s" shell-file-name script-file)) (and cmdline (concat " " cmdline))) stdin-file (current-buffer)) (buffer-string)))) (session ; session evaluation (mapconcat #'org-babel-sh-strip-weird-long-prompt (mapcar #'org-babel-trim (butlast (org-babel-comint-with-output (session org-babel-sh-eoe-output t body) (mapc (lambda (line) (insert line) (comint-send-input nil t) (while (save-excursion (goto-char comint-last-input-end) (not (re-search-forward comint-prompt-regexp nil t))) (accept-process-output (get-buffer-process (current-buffer))))) (append (split-string (org-babel-trim body) "\n") (list org-babel-sh-eoe-indicator)))) 2)) "\n")) ('otherwise ; external shell script (if (and (cdr (assoc :shebang params)) (> (length (cdr (assoc :shebang params))) 0)) (let ((script-file (org-babel-temp-file "sh-script-")) (shebang (cdr (assoc :shebang params))) (padline (not (equal "no" (cdr (assoc :padline params)))))) (with-temp-file script-file (when shebang (insert (concat shebang "\n"))) (when padline (insert "\n")) (insert body)) (set-file-modes script-file #o755) (org-babel-eval script-file "")) (org-babel-eval shell-file-name (org-babel-trim body))))))) (when results (let ((result-params (cdr (assoc :result-params params)))) (org-babel-result-cond result-params results (let ((tmp-file (org-babel-temp-file "sh-"))) (with-temp-file tmp-file (insert results)) (org-babel-import-elisp-from-file tmp-file))))))) (defun org-babel-sh-strip-weird-long-prompt (string) "Remove prompt cruft from a string of shell output." (while (string-match "^% +[\r\n$]+ *" string) (setq string (substring string (match-end 0)))) string) (provide 'ob-shell) ;;; ob-shell.el ends here