diff options
| -rw-r--r-- | debian/README.source | 7 | ||||
| -rw-r--r-- | debian/TODO | 17 | ||||
| -rw-r--r-- | debian/changelog | 254 | ||||
| -rw-r--r-- | debian/compat | 1 | ||||
| -rw-r--r-- | debian/control | 238 | ||||
| -rw-r--r-- | debian/copyright | 318 | ||||
| -rw-r--r-- | debian/docs | 1 | ||||
| -rw-r--r-- | debian/pymca-doc.doc-base | 11 | ||||
| -rwxr-xr-x | debian/rules | 77 | ||||
| -rw-r--r-- | debian/source/format | 1 | ||||
| -rw-r--r-- | debian/tests/control | 11 | ||||
| -rwxr-xr-x | debian/tests/python2 | 8 | ||||
| -rwxr-xr-x | debian/tests/python2-dbg | 8 | ||||
| -rwxr-xr-x | debian/tests/python3 | 8 | ||||
| -rwxr-xr-x | debian/tests/python3-dbg | 8 | ||||
| -rw-r--r-- | debian/watch | 5 |
16 files changed, 973 insertions, 0 deletions
diff --git a/debian/README.source b/debian/README.source new file mode 100644 index 0000000..27e433c --- /dev/null +++ b/debian/README.source @@ -0,0 +1,7 @@ +pymca source package infomation + +The PyMca.sift module was removed. This module contain algorithms that +may be patented in some countries or have some other limitations on +the use. + +The third-party qhull library was removed for the system one.
\ No newline at end of file diff --git a/debian/TODO b/debian/TODO new file mode 100644 index 0000000..d627c91 --- /dev/null +++ b/debian/TODO @@ -0,0 +1,17 @@ +embeded library +- qhull + +copyright +- check compatibility with GPL of the qhull +- add header + * PyMca/PhysicalMemory.py + * PyMca/PyMcaPlugins/MotorInfoPlugin.py + * PyMca/PyMcaPlugins/MotorInfoWindow.py + * PyMca/PyMcaPlugins/StackScanWindowPlugin.py + * PyMca/PyMcaPlugins/XMCDPlugin.py + * PyMca/XMCDWindow.py + * PyMca/XRFMC/XMSOParser.py + * PyMca/XRFMC/XRFMCHelper.py + * PyMca/XRFMC/XRFMCPyMca.py + * PyMca/XRFMC/XRFMCPyMca.py + * PyMca/XRFMC/__init__.py
\ No newline at end of file diff --git a/debian/changelog b/debian/changelog new file mode 100644 index 0000000..69a96d0 --- /dev/null +++ b/debian/changelog @@ -0,0 +1,254 @@ +pymca (5.3.0+dfsg-1) UNRELEASED; urgency=medium + + [ Teemu Ikonen ] + * Remove myself from Uploaders. + + [ Picca Frédéric-Emmanuel ] + * New upstream version 5.3.0+dfsg + * Bump Standars-Version to (4.1.3) (nothing to do) + * d/control + - Updated VCS-x for salsa migration. + - Build-Depends: + + python[3]-fisx[-dbg] (Added) + * d/patches + - 0001-xlocale.h-not-available-under-glibc-2.26.patch (obsolete) + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sun, 15 Apr 2018 11:41:00 +0200 + +pymca (5.2.2+dfsg-2) unstable; urgency=medium + + * fix FTBFS with glibc2.26 (Closes: #887749) + * d/patches/ + - 0001-xlocale.h-not-available-under-glibc-2.26.patch (Added) + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sat, 20 Jan 2018 15:26:30 +0100 + +pymca (5.2.2+dfsg-1) unstable; urgency=medium + + * New upstream version 5.2.2+dfsg + * Bump Standars-Version to (4.1.1) (extra -> optional) + * d/watch use the pypi redirector + * d/control + - Build-Depends: fisx (>= 1.1.4-1~) + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sat, 21 Oct 2017 12:26:49 +0200 + +pymca (5.1.3+dfsg-1) unstable; urgency=medium + + * New upstream version 5.1.3+dfsg + * Depends fisx >= 1.1.2 + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sun, 27 Nov 2016 12:17:50 +0100 + +pymca (5.1.2+dfsg-2) unstable; urgency=medium + + * Added Breaks and Replace to fix the jessie -> strech upgrade (Closes: + #836850) + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sun, 11 Sep 2016 09:24:04 +0200 + +pymca (5.1.2+dfsg-1) unstable; urgency=medium + + * Imported Upstream version 5.1.2+dfsg + * switch to compat level 9 + * Add the autopkgtest suite + * Use cython to regenerate the extensions + * debian/control + + Homepage: https://github.com/vasole/pymca + + new binary packages: + - python-pymca5, python-pymca5-dbg + - python3-pymca5, python3-pymca5-dbg + - pymca-doc + + Update Vcs-git + + bump Standards-Version 3.9.8 (nothing to do) + + Build-Depends Added: + - cython, cython3 + - python-setuptools, python3-setuptools + * debian/copyright + + Use Files-Excluded to remove dfsg-nonfree files + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sat, 20 Aug 2016 12:42:18 +0200 + +pymca (4.7.4+dfsg-1) unstable; urgency=medium + + * Imported Upstream version 4.7.4+dfsg + * debian/patches + - 0003-forwaded-upstream-allow-to-build-with-the-system-qhu.patch + (an equivalent patch was applyed by upstream) + + -- Picca Frédéric-Emmanuel <picca@debian.org> Wed, 01 Oct 2014 21:38:53 +0200 + +pymca (4.7.1+dfsg-2) unstable; urgency=medium + + * debian/control + update the description: pymca support also hdf5 files + * debian/patches + - 0002-debian-fix-header-for-system-qhull.patch + do not apply to fix the FTBFS (Closes: #738752) + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sun, 16 Feb 2014 11:54:36 +0100 + +pymca (4.7.1+dfsg-1) unstable; urgency=medium + + * Imported Upstream version 4.7.1+dfsg + * Repack to remove the embeded qhull library + * debian/control + - Build-Depends: add libqhull-dev + * debian/patches + + 0002-debian-fix-header-for-system-qhull.patch + + 0003-forwaded-upstream-allow-to-build-with-the-system-qhu.patch + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sat, 14 Dec 2013 12:40:37 +0100 + +pymca (4.7.0+dfsg-1) unstable; urgency=medium + + * Imported Upstream version 4.7.0+dfsg + * Repack to remove the PyMca.sift module + * Bump Standars-Version to (3.9.5) nothing to do + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sat, 07 Dec 2013 10:13:57 +0100 + +pymca (4.6.2-1) unstable; urgency=low + + * Imported Upstream version 4.6.2 + * Bump Standars-Version to (3.9.4) nothing to do + * debian/control + - unversionne python-all-dev (cme fix) + * debian/copyright updated + * debian/patches + - 0002-fix-from-upstream-hurd-FTBFS.patch (deleted) + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sat, 01 Jun 2013 14:41:59 +0200 + +pymca (4.6.0-2) unstable; urgency=low + + * debian/patches + - 0002-fix-from-upstream-hurd-FTBFS.patch (new) + + -- Picca Frédéric-Emmanuel <picca@debian.org> Tue, 19 Jun 2012 18:10:01 +0200 + +pymca (4.6.0-1) unstable; urgency=low + + * Imported Upstream version 4.6.0 + * debian/patches + - 0001-Hardcode-correct-Debian-paths-to-executable-scripts.patch (renamed) + 0001-install-the-data-at-the-right-place.patch + - 0002-Various-build-system-fixes.patch (deleted) + - 0003-feature-forwarded-missing-EADL97_KShellConstants.dat.patch (deleted) + * debian/rules + - execute the unit tests just for information now. + + -- Picca Frédéric-Emmanuel <picca@debian.org> Mon, 18 Jun 2012 21:18:07 +0200 + +pymca (4.5.0-4) unstable; urgency=low + + * debian/rules + - fix the permission to avoid FTBFS + sbuild and pbuilder do not failed the same way. + - remove the PyMca/HTML from python modules (documentation) + * debian/patches + - 0003-feature-forwarded-missing-EADL97_KShellConstants.dat.patch (new) + + -- Picca Frédéric-Emmanuel <picca@debian.org> Mon, 19 Mar 2012 09:24:06 +0100 + +pymca (4.5.0-3) unstable; urgency=low + + * fix permission to avoid FTBFS + + -- Picca Frédéric-Emmanuel <picca@debian.org> Mon, 19 Mar 2012 08:06:44 +0100 + +pymca (4.5.0-2) unstable; urgency=low + + * oups FTBFS everywhere + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sun, 18 Mar 2012 23:13:46 +0100 + +pymca (4.5.0-1) unstable; urgency=low + + * Imported Upstream version 4.5.0 (Closes: #656198) + * debian/control + - Upgrade to standards-version 3.9.3 (nothing to do) + - Remove python-support + - Add myself as Uploaders + * debian/copyright + - Updated + * debian/patches + - Unapply patches from source + - Refresh the series using gbp-pq + * debian/rules + - switch to dh_python2 + + -- Picca Frédéric-Emmanuel <picca@debian.org> Sat, 17 Mar 2012 21:48:02 +0100 + +pymca (4.4.1p1-2) unstable; urgency=low + + * control: + - Move python-matplotlib to Recommends + - Add python-qt4-gl, python-opengl, python-mdp and python-h5py to + Recommends (closes: #623757). + * Perpeatuate the hack of manually deleting files installed to the + pymca-data package from the pythonX.X installation directories. + Support the versions of Python in unstable (2.6 and 2.7) and drop + the support for python2.5. This means that this revision of pymca + does not build any more in squeeze. Upstream has promised to tweak + the setup.py to better support splitting of data files in the next + release (closes: #625171). + + -- Teemu Ikonen <tpikonen@gmail.com> Mon, 23 May 2011 16:15:48 +0200 + +pymca (4.4.1p1-1) unstable; urgency=low + + * New upstream version. + - Fixes setting PYTHONPATH in scripts (closes: #605160). + - Includes the specfile module locale fixes, so removing patch + 03_specfile-locale. + - Does not include .pyc files in the orig.tar, so removing code + in 'debian/rules' for preserving them during the build. + * Patch 03_postbatch: Remove starting blank line from pymcapostbatch + script to allow correct distutils #! replacement. + + -- Teemu Ikonen <tpikonen@gmail.com> Tue, 30 Nov 2010 12:32:47 +0100 + +pymca (4.4.0-2) unstable; urgency=low + + * Add patch from upstream to fix reading of specfiles (closes: #602471) + * Add debian/source/format file with contents '3.0 (quilt)' + * Add a README.source file. + * Split changes to upstream sources to patches: + - 01_paths.patch: Hardcode Debian specific documentation and Python paths. + - 02_setup.patch: Misc. changes to setup.py. Do not show license during + build, do not install docs to Python dirs, do not remove old files. + - 03_specfile-locale.patch: Read specfiles with correct 'C' locale. + Define SPECFILE_USE_GNU_SOURCE in setup.py to enable the fix. + * Add debian/metapatches/* (DEP3 header info for patches generated from git). + * copyright: Fix typo, "algoritm" -> "algorithm" + + -- Teemu Ikonen <tpikonen@gmail.com> Thu, 18 Nov 2010 10:58:07 +0100 + +pymca (4.4.0-1) unstable; urgency=low + + * New upstream version. + * Upload to unstable (Closes: #514903) + * setup.py: Use lib-path based on build-time interpreter version + in scripts. + * control: + - Split the data files to arch-independent package pymca-data. Make + pymca depend on it. + - Upgrade to standards-version 3.9.1. + - Upgrade debhelper build-dep to version >= 7.0.50~ because of the + use of overrides in rules. + - Add build-dep to libglu1-mesa-dev | libglu-dev. + * rules: + - Preserve phynx .pyc files during clean. + - Use overrides, delete data files from the pymca package. + * copyright: + - Upgrade format specification to dep5. + - Add copyright information for nnma and phynx. + + -- Teemu Ikonen <tpikonen@gmail.com> Fri, 03 Sep 2010 14:20:02 +0200 + +pymca (4.3.0-1) UNRELEASED; urgency=low + + * Initial release. + + -- Teemu Ikonen <tpikonen@gmail.com> Mon, 16 Feb 2009 15:42:16 +0100 diff --git a/debian/compat b/debian/compat new file mode 100644 index 0000000..ec63514 --- /dev/null +++ b/debian/compat @@ -0,0 +1 @@ +9 diff --git a/debian/control b/debian/control new file mode 100644 index 0000000..dcd51de --- /dev/null +++ b/debian/control @@ -0,0 +1,238 @@ +Source: pymca +Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> +Uploaders: Picca Frédéric-Emmanuel <picca@debian.org> +Section: science +Testsuite: autopkgtest +Priority: optional +Build-Depends: cython, + cython-dbg, + cython3, + cython3-dbg, + debhelper (>= 9), + dh-python, + libglu1-mesa-dev, + libqhull-dev, + python-all-dbg, + python-all-dev, + python-fisx <!nocheck>, + python-fisx-dbg <!nocheck>, + python-h5py <!nocheck> <!nodoc>, + python-h5py-dbg <!nocheck> <!nodoc>, + python-ipython, + python-matplotlib <!nodoc>, + python-matplotlib-dbg <!nodoc>, + python-numpy, + python-numpy-dbg, + python-opengl, + python-pyqt5 <!nodoc>, + python-pyqt5-dbg <!nodoc>, + python-pyqt5.qtopengl <!nodoc>, + python-pyqt5.qtopengl-dbg <!nodoc>, + python-pyqtgraph, + python-qtconsole, + python-setuptools, + python-sphinx, + python-typing, + python3-all-dbg, + python3-all-dev, + python3-fisx <!nocheck>, + python3-fisx-dbg <!nocheck>, + python3-h5py <!nocheck> <!nodoc>, + python3-h5py-dbg <!nocheck> <!nodoc>, + python3-ipython, + python3-matplotlib <!nodoc>, + python3-matplotlib-dbg <!nodoc>, + python3-numpy, + python3-numpy-dbg, + python3-opengl, + python3-pyqt5 <!nodoc>, + python3-pyqt5-dbg <!nodoc>, + python3-pyqt5.qtopengl <!nodoc>, + python3-pyqt5.qtopengl-dbg <!nodoc>, + python3-pyqtgraph, + python3-qtconsole, + python3-setuptools, + python3-sphinx +Standards-Version: 4.1.3 +Vcs-Browser: https://salsa.debian.org/science-team/pymca +Vcs-Git: https://salsa.debian.org/science-team/pymca.git +Homepage: https://github.com/vasole/pymca + +Package: pymca +Architecture: all +Depends: python-pymca5 (>= ${source:Version}), + ${misc:Depends}, + ${python:Depends}, + ${shlibs:Depends} +Description: Applications and toolkit for X-ray fluorescence analysis -- scripts + PyMca is set of applications and Python libraries for analysis of + X-ray fluorescence spectra. + . + The applications included in this package are: + . + * edfviewer - Display and inspection of data files in ESRF Data Format + * elementsinfo - Displays element specific X-ray data + * mca2edf - Converts files from SPEC MCA format to EDF + * peakidentifier - Displays X-ray fluorescence peaks in a given energy range + * pymcabatch - Batch fitting of spectra + * pymcapostbatch - Post-processing of batch fitting results + * pymca - Interactive data-analysis + * pymcaroitool - Region-of-interest (ROI) imaging tool + . + The PyMca toolkit can read data files in SPEC, ESRF data file (EDF), + OMNIC, HDF5, AIFIRA and SupaVisio formats. + . + This are the scripts of the package. + +Package: python-pymca5 +Architecture: any +Section: python +Depends: pymca-data (= ${source:Version}), + python-fisx (>= 1.1.4-1~), + python-matplotlib, + python-opengl, + python-qt4 | python-pyside | python-pyqt5, + python-qt4-gl | python-pyside | python-pyqt5.qtopengl, + ${misc:Depends}, + ${python:Depends}, + ${shlibs:Depends} +Recommends: python-h5py, python-mdp +Description: Applications and toolkit for X-ray fluorescence analysis -- Python 2 + PyMca is set of applications and Python libraries for analysis of + X-ray fluorescence spectra. + . + The applications included in this package are: + . + * edfviewer - Display and inspection of data files in ESRF Data Format + * elementsinfo - Displays element specific X-ray data + * mca2edf - Converts files from SPEC MCA format to EDF + * peakidentifier - Displays X-ray fluorescence peaks in a given energy range + * pymcabatch - Batch fitting of spectra + * pymcapostbatch - Post-processing of batch fitting results + * pymca - Interactive data-analysis + * pymcaroitool - Region-of-interest (ROI) imaging tool + . + The PyMca toolkit can read data files in SPEC, ESRF data file (EDF), + OMNIC, HDF5, AIFIRA and SupaVisio formats. + . + This is the Python 2 version of the package. + +Package: python-pymca5-dbg +Architecture: any +Section: debug +Depends: python-fisx-dbg (>= 1.1.4-1~), + python-matplotlib-dbg, + python-opengl, + python-pymca5 (= ${binary:Version}), + python-qt4-dbg | python-pyqt5-dbg, + python-qt4-gl-dbg | python-pyqt5.qtopengl-dbg, + ${misc:Depends}, + ${python:Depends}, + ${shlibs:Depends} +Recommends: python-dbg, python-h5py-dbg, python-mdp +Description: Applications and toolkit for X-ray fluorescence analysis -- Python 2 debug + PyMca is set of applications and Python libraries for analysis of + X-ray fluorescence spectra. + . + The applications included in this package are: + . + * edfviewer - Display and inspection of data files in ESRF Data Format + * elementsinfo - Displays element specific X-ray data + * mca2edf - Converts files from SPEC MCA format to EDF + * peakidentifier - Displays X-ray fluorescence peaks in a given energy range + * pymcabatch - Batch fitting of spectra + * pymcapostbatch - Post-processing of batch fitting results + * pymca - Interactive data-analysis + * pymcaroitool - Region-of-interest (ROI) imaging tool + . + The PyMca toolkit can read data files in SPEC, ESRF data file (EDF), + OMNIC, HDF5, AIFIRA and SupaVisio formats. + . + This is the Python 2 debug version of the package. + +Package: python3-pymca5 +Architecture: any +Section: python +Depends: pymca-data (= ${source:Version}), + python3-fisx (>= 1.1.4-1~), + python3-matplotlib, + python3-opengl, + python3-pyqt4 | python3-pyside | python3-pyqt5, + python3-pyqt4.qtopengl | python3-pyside | python3-pyqt5.qtopengl, + ${misc:Depends}, + ${python3:Depends}, + ${shlibs:Depends} +Recommends: python3-h5py, python3-mdp +Description: Applications and toolkit for X-ray fluorescence analysis -- Python 3 + PyMca is set of applications and Python libraries for analysis of + X-ray fluorescence spectra. + . + The applications included in this package are: + . + * edfviewer - Display and inspection of data files in ESRF Data Format + * elementsinfo - Displays element specific X-ray data + * mca2edf - Converts files from SPEC MCA format to EDF + * peakidentifier - Displays X-ray fluorescence peaks in a given energy range + * pymcabatch - Batch fitting of spectra + * pymcapostbatch - Post-processing of batch fitting results + * pymca - Interactive data-analysis + * pymcaroitool - Region-of-interest (ROI) imaging tool + . + The PyMca toolkit can read data files in SPEC, ESRF data file (EDF), + OMNIC, HDF5, AIFIRA and SupaVisio formats. + . + This is the Python 3 version of the package. + +Package: python3-pymca5-dbg +Architecture: any +Section: debug +Depends: python3-fisx-dbg (>= 1.1.4-1~), + python3-matplotlib-dbg, + python3-opengl, + python3-pymca5 (= ${binary:Version}), + python3-pyqt4-dbg | python3-pyqt5-dbg, + python3-pyqt4.qtopengl-dbg | python3-pyqt5.qtopengl-dbg, + ${misc:Depends}, + ${python3:Depends}, + ${shlibs:Depends} +Recommends: python3-dbg, python3-h5py-dbg, python3-mdp +Description: Applications and toolkit for X-ray fluorescence analysis -- Python 3 debug + PyMca is set of applications and Python libraries for analysis of + X-ray fluorescence spectra. + . + The applications included in this package are: + . + * edfviewer - Display and inspection of data files in ESRF Data Format + * elementsinfo - Displays element specific X-ray data + * mca2edf - Converts files from SPEC MCA format to EDF + * peakidentifier - Displays X-ray fluorescence peaks in a given energy range + * pymcabatch - Batch fitting of spectra + * pymcapostbatch - Post-processing of batch fitting results + * pymca - Interactive data-analysis + * pymcaroitool - Region-of-interest (ROI) imaging tool + . + The PyMca toolkit can read data files in SPEC, ESRF data file (EDF), + OMNIC, HDF5, AIFIRA and SupaVisio formats. + . + This is the Python 3 debug version of the package. + +Package: pymca-data +Architecture: all +Depends: ${misc:Depends} +Description: Architecture independent data files for PyMca + PyMca is set of applications and Python libraries for analysis of + X-ray fluorescence spectra. + . + This package contains the architecture independent data files for PyMca. + +Package: pymca-doc +Architecture: all +Section: doc +Depends: ${misc:Depends}, ${sphinxdoc:Depends} +Breaks: pymca (<< 5.1.2+dfsg) +Replaces: pymca (<< 5.1.2+dfsg) +Description: Documentation files for PyMca + PyMca is set of applications and Python libraries for analysis of + X-ray fluorescence spectra. + . + This package contains the documentation files for PyMca. diff --git a/debian/copyright b/debian/copyright new file mode 100644 index 0000000..b441644 --- /dev/null +++ b/debian/copyright @@ -0,0 +1,318 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: PyMCA +Upstream-Contact: V. Armando Sole <sole@esrf.fr> +Files-Excluded: PyMca5/PyMcaMath/sift third-party/qhull third-party/fisx + third-party/khronos_headers + +Files: * +Copyright: 2004-2017, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/* +Copyright: 1995-2017, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/Object3D/* +Copyright: 2004-2017, V.A. Sole, European Synchrotron Radiation Facility +License: LGPL-2+ + +Files: PyMca5/Object3D/Object3DCTools/* +Copyright: 2004-2015, Cory Bloyd (corysama@yahoo.com) +License: Expat + +Files: PyMca5/Object3D/Object3DCTools/Object3DCTools.c + PyMca5/Object3D/Object3DCTools/setup.py +Copyright: 2004-2017, V.A. Sole, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/Object3D/Object3DQhull/* +Copyright: 1995-2017, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/Object3D/Object3DQhull/Object3DQhull.c +Copyright: 2004-2017, V.A. Sole, European Synchrotron Radiation Facility +License: LGPL-2+ + +Files: PyMca5/Object3D/Object3DQhull/_qhull/* +Copyright: 2004-2014, European Synchrotron Radiation Facility (ESRF) +License: Expat + +Files: PyMca5/Object3D/qtconffile +Copyright: 2004-2013, European Synchrotron Radiation Facility +License: LGPL-2+ + +Files: PyMca5/Object3D/scripts/* +Copyright: 2002, 2004-2015, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/Object3D/scripts/object3d_win_post_install.py +Copyright: 1995-2017, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMca/* +Copyright: 2004-2017, V.A. Sole, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaCore/XiaCorrect.py +Copyright: 2004-2015, E. Papillon, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaData/* +Copyright: 2004-2014, European Synchrotron Radiation Facility (ESRF) +License: Expat + +Files: PyMca5/PyMcaGraph/ctools/_ctools/cython/_ctools.c +Copyright: 2002, 2004-2015, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaGraph/ctools/_ctools/include/InsidePolygonWithBounds.h +Copyright: Paul Bourke +License: Expat + +Files: PyMca5/PyMcaGraph/ctools/_ctools/src/InsidePolygonWithBounds.c +Copyright: Paul Bourke +License: Expat + +Files: PyMca5/PyMcaGui/* +Copyright: 2004-2017, V.A. Sole, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaGui/io/QEdfFileWidget.py + PyMca5/PyMcaGui/io/QSpecFileWidget.py + PyMca5/PyMcaGui/io/QSpsWidget.py + PyMca5/PyMcaGui/io/SpecFileCntTable.py + PyMca5/PyMcaGui/io/SpecFileMcaTable.py +Copyright: 2004-2017, E. Papillon, V.A. Sole, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaGui/io/hdf5/HDF5Widget.py +Copyright: 2004-2017, V.A. Sole, ESRF - D. Dale CHESS +License: Expat + +Files: PyMca5/PyMcaGui/math/fitting/RateLawWindow.py +Copyright: 1995-2017, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaGui/misc/TableWidget.py +Copyright: 1995-2017, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaGui/physics/* +Copyright: 1995-2017, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaGui/plotting/ImageView.py + PyMca5/PyMcaGui/plotting/Toolbars.py + PyMca5/PyMcaGui/plotting/_ImageProfile.py +Copyright: 1995-2017, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaGui/pymca/PyMca_help.py +Copyright: 2004-2017, E. Papillon, V.A. Sole, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaGui/pymca/StackROIBatchWindow.py + PyMca5/PyMcaGui/pymca/StackXASBatchWindow.py +Copyright: 1995-2017, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaGui/pymca/SumRulesTool.py + PyMca5/PyMcaGui/pymca/XMCDWindow.py +Copyright: 2004-2017, T. Rueter, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaGui/pymca/XiaCorrectWizard.py +Copyright: 2004-2015, E. Papillon, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaIO/MEDFile.py +Copyright: 2010, Matthew Newville, The University of Chicago +License: Expat + +Files: PyMca5/PyMcaIO/NumpyStack.py +Copyright: 2016, Diamond Light Source +License: Expat + +Files: PyMca5/PyMcaIO/PyMcaIOHelper/* +Copyright: 2004-2017, V.A. Sole, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaIO/specfile/MANIFEST.in +Copyright: 2004-2013, European Synchrotron Radiation Facility +License: LGPL-2+ + +Files: PyMca5/PyMcaIO/specfile/src/specfile_py.c + PyMca5/PyMcaIO/specfile/src/specfile_py3.c +Copyright: 2004-2015, European Synchrotron Radiation Facility +License: LGPL-2+ + +Files: PyMca5/PyMcaIO/sps/Include/* +Copyright: 1998-2017, European Synchrotron Radiation Facility (ESRF) +License: Expat + +Files: PyMca5/PyMcaIO/sps/Include/spec_shm.h +Copyright: 1995-2010, Certified Scientific Software +License: Expat + +Files: PyMca5/PyMcaIO/sps/Include/sps.h +Copyright: 1998-2013, Certified Scientific Software (CSS) + 1998-2010, European Synchrotron Radiation Facility (ESRF) +License: Expat + +Files: PyMca5/PyMcaIO/sps/Include/sps_lut.h +Copyright: 2004-2009, European Synchrotron Radiation Facility +License: GPL-2+ + +Files: PyMca5/PyMcaIO/sps/MANIFEST.in +Copyright: 2002, 2004-2015, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaIO/sps/Src/sps.c +Copyright: 1998-2016, European Synchrotron Radiation Facility (ESRF) + 1998-2016, Certified Scientific Software (CSS) +License: Expat + +Files: PyMca5/PyMcaIO/sps/Src/sps_py.c +Copyright: 1998-2017, European Synchrotron Radiation Facility (ESRF) +License: Expat + +Files: PyMca5/PyMcaMath/PyMcaSciPy/* +Copyright: 2005, Travis Oliphant + 2003-2009, SciPy Developers. + 2001, 2002, Enthought, Inc. +License: BSD-3-clause + +Files: PyMca5/PyMcaMath/PyMcaSciPy/signal/__init__.py + PyMca5/PyMcaMath/PyMcaSciPy/signal/median.py +Copyright: 1995-2017, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaMath/SGModule.py +Copyright: 2008, Uwe Schmitt +License: Expat + +Files: PyMca5/PyMcaMath/mva/NNMAModule.py +Copyright: 2008, 2009, Uwe Schmitt, uschmitt@mineway.de +License: BSD-3-clause + +Files: PyMca5/PyMcaMath/mva/py_nnma/* +Copyright: 2008, 2009, Uwe Schmitt, uschmitt@mineway.de +License: BSD-3-clause + +Files: PyMca5/PyMcaPhysics/xas/_xas/cython/* +Copyright: 2002, 2004-2015, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaPhysics/xas/_xas/cython/_xas.pyx +Copyright: 1995-2017, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaPlugins/* +Copyright: 2004-2017, V.A. Sole, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaPlugins/AdvancedAlignmentScanPlugin.py +Copyright: 2004-2015, T. Rueter, V.A. Sole, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaPlugins/MedianFilterScanDeglitchPlugin.py +Copyright: 2004-2015, T.Rueter, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaPlugins/MotorInfoPlugin.py + PyMca5/PyMcaPlugins/MotorInfoWindow.py + PyMca5/PyMcaPlugins/XMCDPlugin.py +Copyright: 2004-2017, T. Rueter, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaPlugins/MultipleScanToMeshPlugin.py +Copyright: 2004-2016, M. Rovezzi, V.A. Sole European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaPlugins/optional/* +Copyright: 2004-2015, V.A. Sole, T. Coutinho, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/PyMcaPlugins/optional/JsonRpc1DPlugin.py +Copyright: 1995-2017, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/__init__.py +Copyright: 2004-2017, V.A. Sole, European Synchrotron Radiation Facility +License: Expat + +Files: PyMca5/scripts/* +Copyright: 2002, 2004-2015, European Synchrotron Radiation Facility +License: Expat + +Files: build-deb.sh +Copyright: 2015-2017, European Synchrotron Radiation Facility, Grenoble, France +License: Expat + +Files: debian/* +Copyright: 2010-2015, Picca Frederic-Emmanuel <picca@debian.org> + 2009, 2010, Teemu Ikonen <tpikonen@gmail.com> +License: Expat + +Files: scripts/* +Copyright: 2004-2013, V. Armando Sole - ESRF +License: Expat + +Files: version.py +Copyright: 1995-2017, European Synchrotron Radiation Facility +License: Expat + +License: BSD-3-clause + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions are met: + . + a. Redistributions of source code must retain the above copyright notice, + this list of conditions and the following disclaimer. + b. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + c. Neither the name of Enthought nor the names of the SciPy Developers + may be used to endorse or promote products derived from this software + without specific prior written permission. + . + . + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIEED TO, THE + IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE FOR + ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL + DAMAGES (INCLUDING, BUT NOT LIEED TO, PROCUREMENT OF SUBSTITUTE GOODS OR + SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER + CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT + LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY + OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH + DAMAGE. + +License: Expat + Permission is hereby granted, free of charge, to any person obtaining + a copy of the software in these files (the "Software"), to deal in + the Software without restriction, including without limitation the + rights to use, copy, modify, merge, publish, distribute, sublicense, + and/or sell copies of the Software, and to permit persons to whom the + Software is furnished to do so, subject to the following conditions: + . + The above copyright notice and this permission notice shall be + included in all copies or substantial portions of the Software. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, + EXPRESS OR IMPLIED, INCLUDING BUT NOT LIExpatED TO THE WARRANTIES OF + MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND + NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS + BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN + ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN + CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE + SOFTWARE. + +License: LGPL-2+ + This toolkit is free software; you can redistribute + it and/or modify it under the terms of the GNU Lesser General Public + License as published by the Free Software Foundation; either version + 2 of the License, or (at your option) any later version. + . + In Debian systems, the GNU General Public License version 2 can be + found at /usr/share/common-licenses/LGPL-2 diff --git a/debian/docs b/debian/docs new file mode 100644 index 0000000..e845566 --- /dev/null +++ b/debian/docs @@ -0,0 +1 @@ +README diff --git a/debian/pymca-doc.doc-base b/debian/pymca-doc.doc-base new file mode 100644 index 0000000..dc74e81 --- /dev/null +++ b/debian/pymca-doc.doc-base @@ -0,0 +1,11 @@ +Document: pymca +Title: PyMCA – X-Ray Spectrum Analysis in Python +Author: V. A. Solé and E. Papillon +Abstract: Introduction to PyMCA X-Ray Spectrum Analysis software +Section: Science/Data Analysis + +Format: HTML +Index: /usr/share/doc/pymca-doc/html/index.html +Files: /usr/share/doc/pymca-doc/html/*.html + + diff --git a/debian/rules b/debian/rules new file mode 100755 index 0000000..c345cca --- /dev/null +++ b/debian/rules @@ -0,0 +1,77 @@ +#!/usr/bin/make -f + +export DH_VERBOSE=1 +export HOME=/tmp +export SPECFILE_USE_GNU_SOURCE=1 +export WITH_CYTHON=1 +export QHULL_CFLAGS=-I/usr/include/qhull +export QHULL_LIBS=-lqhull +export PYMCA_DATA_DIR=/usr/share/pymca +export PYMCA_DOC_DIR=$(PYMCA_DATA_DIR)/doc + +export PYMCA_DATA_DIR_TEST=$(CURDIR)/PyMca5/PyMcaData/ +export PYMCA_DOC_DIR_TEST=$(PYMCA_DATA_DIR_TEST)/doc + +export PYBUILD_NAME=pymca5 +export PYBUILD_AFTER_INSTALL=rm -rf {destdir}/usr/bin/ {destdir}/usr/share/man {destdir}$(PYMCA_DATA_DIR) + +# Make does not offer a recursive wildcard function, so here's one: +rwildcard=$(wildcard $1$2) $(foreach d,$(wildcard $1*),$(call rwildcard,$d/,$2)) + +# How to recursively find all files with the same name in a given folder +ALL_PYX := $(call rwildcard,PyMca5/,*.pyx) +#NOTA: No space before * + +%: + dh $@ --with python2,python3,sphinxdoc --buildsystem=pybuild + +override_dh_clean: + dh_clean + # remove the cython generated file to force rebuild + rm -f $(patsubst %.pyx,%.cpp,${ALL_PYX}) + rm -f $(patsubst %.pyx,%.c,${ALL_PYX}) + rm -f $(patsubst %.pyx,%.html,${ALL_PYX}) + rm -rf *.egg-info + # remove the built documentation + rm -rf doc/build + +override_dh_installchangelogs: + dh_installchangelogs changelog.txt + +override_dh_install: + dh_install -O--buildsystem=pybuild + + # pymca + python setup.py install_scripts -d debian/pymca/usr/bin + python setup.py install_man -d debian/pymca/usr/share/man + + dh_install -p pymca package/desktop/edfviewer.desktop usr/share/applications + dh_install -p pymca package/desktop/elementsinfo.desktop usr/share/applications + dh_install -p pymca package/desktop/peakidentifier.desktop usr/share/applications + dh_install -p pymca package/desktop/pymca.desktop usr/share/applications + dh_install -p pymca package/desktop/pymca.xpm usr/share/pixmaps + dh_install -p pymca package/desktop/pymcaroitool.desktop usr/share/applications + + # pymca-data + python setup.py install_data --root debian/pymca-data/ + rm -f debian/pymca-data/usr/share/pymca/EPDL97/LICENSE + rm -f debian/pymca-data/usr/share/pymca/LICENSE + rm -f debian/pymca-data/usr/share/pymca/LICENSE.GPL + rm -f debian/pymca-data/usr/share/pymca/LICENSE.LGPL + rm -f debian/pymca-data/usr/share/pymca/LICENSE.MIT + rm -rf debian/pymca-data/usr/share/pymca/doc/HTML/PyMCA_files/ + + dh_numpy + dh_numpy3 + +override_dh_auto_test: + PYBUILD_SYSTEM=custom \ + PYBUILD_TEST_ARGS="cd {build_dir} && PYMCA_DATA_DIR=$(PYMCA_DATA_DIR_TEST) {interpreter} PyMca5/tests/TestAll.py" dh_auto_test + +override_dh_sphinxdoc: +ifeq (,$(findstring nodocs, $(DEB_BUILD_OPTIONS))) + PYBUILD_SYSTEM=custom \ + PYBUILD_BUILD_ARGS="cd doc && PYTHONPATH={build_dir} PYMCA_DATA_DIR=$(PYMCA_DATA_DIR_TEST) http_proxy='127.0.0.1:9' {interpreter} -m sphinx -N -bhtml source build/html" dh_auto_build # HTML generator + dh_installdocs "doc/build/html" -p pymca-doc + dh_sphinxdoc -O--buildsystem=pybuild +endif diff --git a/debian/source/format b/debian/source/format new file mode 100644 index 0000000..163aaf8 --- /dev/null +++ b/debian/source/format @@ -0,0 +1 @@ +3.0 (quilt) diff --git a/debian/tests/control b/debian/tests/control new file mode 100644 index 0000000..45f948b --- /dev/null +++ b/debian/tests/control @@ -0,0 +1,11 @@ +Tests: python2 +Depends: python-pymca5, python-all + +Tests: python3 +Depends: python3-pymca5, python3-all + +Tests: python2-dbg +Depends: python-pymca5-dbg, python-all-dbg + +Tests: python3-dbg +Depends: python3-pymca5-dbg, python3-all-dbg diff --git a/debian/tests/python2 b/debian/tests/python2 new file mode 100755 index 0000000..1b84e52 --- /dev/null +++ b/debian/tests/python2 @@ -0,0 +1,8 @@ +#!/bin/sh +set -e -u +cd "$ADTTMP" + +for python in $(pyversions -i); do + PYTHONWARNINGS=d $python -m PyMca5.tests.TestAll 2>&1 +done + diff --git a/debian/tests/python2-dbg b/debian/tests/python2-dbg new file mode 100755 index 0000000..43d1a2e --- /dev/null +++ b/debian/tests/python2-dbg @@ -0,0 +1,8 @@ +#!/bin/sh +set -e -u +cd "$ADTTMP" + +for python in $(pyversions -i); do + PYTHONWARNINGS=d $python-dbg -m PyMca5.tests.TestAll 2>&1 +done + diff --git a/debian/tests/python3 b/debian/tests/python3 new file mode 100755 index 0000000..132b0c4 --- /dev/null +++ b/debian/tests/python3 @@ -0,0 +1,8 @@ +#!/bin/sh +set -e -u +cd "$ADTTMP" + +for python in $(py3versions -i); do + PYTHONWARNINGS=d $python -m PyMca5.tests.TestAll 2>&1 +done + diff --git a/debian/tests/python3-dbg b/debian/tests/python3-dbg new file mode 100755 index 0000000..e4f5fa4 --- /dev/null +++ b/debian/tests/python3-dbg @@ -0,0 +1,8 @@ +#!/bin/sh +set -e -u +cd "$ADTTMP" + +for python in $(py3versions -i); do + PYTHONWARNINGS=d $python-dbg -m PyMca5.tests.TestAll 2>&1 +done + diff --git a/debian/watch b/debian/watch new file mode 100644 index 0000000..a59271d --- /dev/null +++ b/debian/watch @@ -0,0 +1,5 @@ +version=4 +opts=repacksuffix=+dfsg,\ +dversionmangle=s/.dfsg//, \ +https://pypi.python.org/packages/source/p/PyMca5/ \ + PyMca5@ANY_VERSION@@ARCHIVE_EXT@ debian uupdate |