1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
|
#/*##########################################################################
# Copyright (C) 2004-2016 V.A. Sole, European Synchrotron Radiation Facility
#
# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
# the ESRF by the Software group.
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
#
#############################################################################*/
"""
This plugin opens a scan window displaying a number of spectra.
The user can choose to display 10, 100, 1000 or all spectra.
"""
__author__ = "V.A. Sole - ESRF Data Analysis"
__contact__ = "sole@esrf.fr"
__license__ = "MIT"
__copyright__ = "European Synchrotron Radiation Facility, Grenoble, France"
from PyMca5 import StackPluginBase
from PyMca5.PyMca import ScanWindow
import numpy
DEBUG = 0
class ShowSpectra(StackPluginBase.StackPluginBase):
def __init__(self, stackWindow, **kw):
StackPluginBase.DEBUG = DEBUG
StackPluginBase.StackPluginBase.__init__(self, stackWindow, **kw)
self.methodDict = {}
function = self.showSpectra
info = "Show 1D Plot with all spectra"
icon = None
self.methodDict["Show_All"] =[function,
info,
icon]
function = self.showOneOver10
info = "Show 1/10th of all spectra"
icon = None
self.methodDict["Show_10"] =[function,
info,
icon]
function = self.showOneOver100
info = "Show 1/100 th of all spectra"
icon = None
self.methodDict["Show_100"] =[function,
info,
icon]
function = self.showOneOver1000
info = "Show 1/1000 th of all spectra"
icon = None
self.methodDict["Show_1000"] =[function,
info,
icon]
self.widget = None
def stackUpdated(self):
if self.widget is not None:
self.widget.close()
self.widget = None
def getMethods(self, plottype=None):
keys = list(self.methodDict.keys())
keys.sort()
return keys
def getMethodToolTip(self, methodName):
return self.methodDict[methodName][1]
def applyMethod(self, methodName):
delta = methodName.split("_")[1]
if delta == "All":
self.showSpectra()
else:
self.showSpectra(step=int(delta))
def showOneOver10(self):
return self.showSpectra(step=10)
def showOneOver100(self):
return self.showSpectra(step=100)
def showOneOver1000(self):
return self.showSpectra(step=1000)
def showSpectra(self, step=1):
stack = self.getStackDataObject()
if not isinstance(stack.data, numpy.ndarray):
text = "This method does not work with dynamically loaded stacks"
raise TypeError(text)
activeCurve = self.getActiveCurve()
if activeCurve in [None, []]:
return
x, spectrum, legend, info = activeCurve
if self.widget is None:
self.widget = ScanWindow.ScanWindow()
data = stack.data
replot = False
if step in [None, 1]:
for i in range(data.shape[0]):
for j in range(data.shape[1]):
if (i==0) and (j==0):
replace = True
else:
replace = False
self.widget.addCurve(x, data[i, j], legend="Row %03d Col %03d" % (i, j), replace=replace, replot=replot)
else:
counter = 0
for i in range(data.shape[0]):
for j in range(data.shape[1]):
if not counter % step:
if (i==0) and (j==0):
replace = True
else:
replace = False
self.widget.addCurve(x, data[i, j],
legend="Row %03d Col %03d" % (i, j),
replace=replace, replot=replot)
counter += 1
self.widget.resetZoom()
self.widget.show()
self.widget.raise_()
MENU_TEXT="Show Spectra"
def getStackPluginInstance(plotWindow, **kw):
ob = ShowSpectra(plotWindow)
return ob
|
