diff options
| author | Nilesh Patra <nilesh@debian.org> | 2021-11-03 07:06:53 +0000 |
|---|---|---|
| committer | Nilesh Patra <nilesh@debian.org> | 2021-11-03 12:38:48 +0530 |
| commit | 0a49bbc1c524bd6b79a895847ad477ce9b85e6b6 (patch) | |
| tree | 103d04e87b4ca740c8e805a78092e0f1ebd60faf | |
| parent | 1f8f65fed336d4ffe9734e272c8d41bc732fd537 (diff) | |
[skip ci] Add patch to fix tests
| -rw-r--r-- | debian/changelog | 3 | ||||
| -rw-r--r-- | debian/patches/fix_dtype.patch | 15 | ||||
| -rw-r--r-- | debian/patches/series | 1 |
3 files changed, 18 insertions, 1 deletions
diff --git a/debian/changelog b/debian/changelog index 87b5e78..4b98ee8 100644 --- a/debian/changelog +++ b/debian/changelog @@ -6,8 +6,9 @@ pyranges (0.0.111+ds-1) UNRELEASED; urgency=medium [ Nilesh Patra ] * New upstream version 0.0.111+ds * Run cme + * Add patch to fix tests - -- Nilesh Patra <nilesh@debian.org> Tue, 02 Nov 2021 23:28:55 +0530 + -- Nilesh Patra <nilesh@debian.org> Wed, 03 Nov 2021 07:06:31 +0000 pyranges (0.0.85+ds-1) unstable; urgency=medium diff --git a/debian/patches/fix_dtype.patch b/debian/patches/fix_dtype.patch new file mode 100644 index 0000000..1e61381 --- /dev/null +++ b/debian/patches/fix_dtype.patch @@ -0,0 +1,15 @@ +Description: Explicitly case variable to category dtype +Author: Nilesh Patra <nilesh@debian.org> +Last-Update: 2021-11-03 +--- a/pyranges/methods/concat.py ++++ b/pyranges/methods/concat.py +@@ -43,7 +43,8 @@ + if any(strand_info) and not all(strand_info): + new_res = {} + for k, v in res.items(): +- v.loc[:, "Strand"] = v.Strand.cat.add_categories(["."]) ++ type_v = v.Strand.astype('category') ++ v.loc[:, "Strand"] = type_v.cat.add_categories(["."]) + new_res[k] = v.assign(Strand=v.Strand.fillna(".")) + res = pr.PyRanges(new_res) + res.Strand = res.Strand diff --git a/debian/patches/series b/debian/patches/series new file mode 100644 index 0000000..fb85c46 --- /dev/null +++ b/debian/patches/series @@ -0,0 +1 @@ +fix_dtype.patch |