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Upstream provides binary files without sources for:
* tests/test_data/test_sorted.bam.bai
* tests/test_data/test_sorted.bam
* pyranges/example_data/control.bam.bai
* pyranges/example_data/control.bam
These have been converted to corresponding text (.sam) files with the commands:
* samtools view -h -o test_sorted.sam test_sorted.bam
* samtools view -h -o control.sam control.bam
And the corresponding *.sam files are added to: debian/missing-sources
They can be generated back with the following commands:
* cat debian/missing-sources/test_sorted.sam| samtools view -Sb - > tests/test_data/test_sorted.bam
* cat debian/missing-sources/control.sam| samtools view -Sb - > pyranges/example_data/control.bam
* samtools index tests/test_data/test_sorted.bam tests/test_data/test_sorted.bam.bai
* samtools index pyranges/example_data/control.bam pyranges/example_data/control.bam.bai
These commands are also being run in debian/rules since these binaries are needed for testing.
-- Nilesh Patra <npatra974@gmail.com> Sun, 21 Jun 2020 20:13:10 +0530
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