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authorPicca Frédéric-Emmanuel <picca@synchrotron-soleil.fr>2018-07-31 16:22:25 +0200
committerPicca Frédéric-Emmanuel <picca@synchrotron-soleil.fr>2018-07-31 16:22:25 +0200
commit159ef14fb9e198bb0066ea14e6b980f065de63dd (patch)
treebc37c7d4ba09ee59deb708897fa0571709aec293 /silx/io
parent270d5ddc31c26b62379e3caa9044dd75ccc71847 (diff)
New upstream version 0.8.0+dfsg
Diffstat (limited to 'silx/io')
-rw-r--r--silx/io/__init__.py9
-rw-r--r--silx/io/commonh5.py103
-rw-r--r--silx/io/convert.py27
-rw-r--r--silx/io/fabioh5.py81
-rw-r--r--silx/io/nxdata/__init__.py64
-rw-r--r--silx/io/nxdata/_utils.py183
-rw-r--r--silx/io/nxdata/parse.py (renamed from silx/io/nxdata.py)795
-rw-r--r--silx/io/nxdata/write.py202
-rw-r--r--silx/io/setup.py7
-rw-r--r--silx/io/specfile.c32121
-rw-r--r--silx/io/specfile.pyx50
-rw-r--r--silx/io/spech5.py2
-rw-r--r--silx/io/test/test_fabioh5.py26
-rw-r--r--silx/io/test/test_nxdata.py16
-rw-r--r--silx/io/utils.py6
15 files changed, 25788 insertions, 7904 deletions
diff --git a/silx/io/__init__.py b/silx/io/__init__.py
index 5e736b5..b43d290 100644
--- a/silx/io/__init__.py
+++ b/silx/io/__init__.py
@@ -1,7 +1,7 @@
# coding: utf-8
# /*##########################################################################
#
-# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
+# Copyright (c) 2016-2018 European Synchrotron Radiation Facility
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
@@ -22,7 +22,12 @@
# THE SOFTWARE.
#
# ###########################################################################*/
-"""I/O modules"""
+"""This package provides functionalities to read and write data files.
+
+It is geared towards support of and conversion to HDF5/NeXus.
+
+See silx documentation: http://www.silx.org/doc/silx/latest/
+"""
__authors__ = ["P. Knobel"]
__license__ = "MIT"
diff --git a/silx/io/commonh5.py b/silx/io/commonh5.py
index 4fbcd08..4b2d8c3 100644
--- a/silx/io/commonh5.py
+++ b/silx/io/commonh5.py
@@ -34,11 +34,11 @@ import numpy
from silx.third_party import six
import weakref
-from .utils import is_dataset
+from . import utils
__authors__ = ["V. Valls", "P. Knobel"]
__license__ = "MIT"
-__date__ = "11/10/2017"
+__date__ = "02/07/2018"
class _MappingProxyType(collections.MutableMapping):
@@ -101,12 +101,31 @@ class Node(object):
self.__basename = name
@property
+ def h5_class(self):
+ """Returns the HDF5 class which is mimicked by this class.
+
+ :rtype: H5Type
+ """
+ raise NotImplementedError()
+
+ @property
def h5py_class(self):
"""Returns the h5py classes which is mimicked by this class. It can be
one of `h5py.File, h5py.Group` or `h5py.Dataset`
+ This should not be used anymore. Prefer using `h5_class`
+
:rtype: Class
"""
+ h5_class = self.h5_class
+ if h5_class == utils.H5Type.FILE:
+ return h5py.File
+ elif h5_class == utils.H5Type.GROUP:
+ return h5py.Group
+ elif h5_class == utils.H5Type.DATASET:
+ return h5py.Dataset
+ elif h5_class == utils.H5Type.SOFT_LINK:
+ return h5py.SoftLink
raise NotImplementedError()
@property
@@ -244,13 +263,12 @@ class Dataset(Node):
return self.__data
@property
- def h5py_class(self):
- """Returns the h5py classes which is mimicked by this class. It can be
- one of `h5py.File, h5py.Group` or `h5py.Dataset`
+ def h5_class(self):
+ """Returns the HDF5 class which is mimicked by this class.
- :rtype: Class
+ :rtype: H5Type
"""
- return h5py.Dataset
+ return utils.H5Type.DATASET
@property
def dtype(self):
@@ -369,7 +387,7 @@ class Dataset(Node):
# make comparisons and operations on the data
def __eq__(self, other):
"""When comparing datasets, compare the actual data."""
- if is_dataset(other):
+ if utils.is_dataset(other):
return self[()] == other[()]
return self[()] == other
@@ -425,31 +443,31 @@ class Dataset(Node):
return self.__bool__()
def __ne__(self, other):
- if is_dataset(other):
+ if utils.is_dataset(other):
return self[()] != other[()]
else:
return self[()] != other
def __lt__(self, other):
- if is_dataset(other):
+ if utils.is_dataset(other):
return self[()] < other[()]
else:
return self[()] < other
def __le__(self, other):
- if is_dataset(other):
+ if utils.is_dataset(other):
return self[()] <= other[()]
else:
return self[()] <= other
def __gt__(self, other):
- if is_dataset(other):
+ if utils.is_dataset(other):
return self[()] > other[()]
else:
return self[()] > other
def __ge__(self, other):
- if is_dataset(other):
+ if utils.is_dataset(other):
return self[()] >= other[()]
else:
return self[()] >= other
@@ -464,6 +482,35 @@ class Dataset(Node):
raise AttributeError("Dataset has no attribute %s" % item)
+class DatasetProxy(Dataset):
+ """Virtual dataset providing content of another dataset"""
+
+ def __init__(self, name, target, parent=None):
+ Dataset.__init__(self, name, data=None, parent=parent)
+ if not utils.is_dataset(target):
+ raise TypeError("A Dataset is expected but %s found", target.__class__)
+ self.__target = target
+
+ @property
+ def shape(self):
+ return self.__target.shape
+
+ @property
+ def size(self):
+ return self.__target.size
+
+ @property
+ def dtype(self):
+ return self.__target.dtype
+
+ def _get_data(self):
+ return self.__target[...]
+
+ @property
+ def attrs(self):
+ return self.__target.attrs
+
+
class _LinkToDataset(Dataset):
"""Virtual dataset providing link to another dataset"""
@@ -532,13 +579,12 @@ class SoftLink(Node):
self.target = str(path)
@property
- def h5py_class(self):
- """Returns the h5py class which is mimicked by this class
- (:class:`h5py.SoftLink`).
+ def h5_class(self):
+ """Returns the HDF5 class which is mimicked by this class.
- :rtype: Class
+ :rtype: H5Type
"""
- return h5py.SoftLink
+ return utils.H5Type.SOFT_LINK
@property
def path(self):
@@ -569,14 +615,12 @@ class Group(Node):
node._set_parent(self)
@property
- def h5py_class(self):
- """Returns the h5py classes which is mimicked by this class.
+ def h5_class(self):
+ """Returns the HDF5 class which is mimicked by this class.
- It returns `h5py.Group`
-
- :rtype: Class
+ :rtype: H5Type
"""
- return h5py.Group
+ return utils.H5Type.GROUP
def _get(self, name, getlink):
"""If getlink is True and name points to an existing SoftLink, this
@@ -654,9 +698,8 @@ class Group(Node):
node = h5py.HardLink()
if getclass:
- if hasattr(node, "h5py_class"):
- obj = node.h5py_class
- else:
+ obj = utils.get_h5py_class(node)
+ if obj is None:
obj = node.__class__
else:
obj = node
@@ -754,7 +797,7 @@ class Group(Node):
if node is None:
# broken link
return False
- if node.h5py_class == h5py.Dataset:
+ if utils.is_dataset(node):
return False
continue
if basename not in node._get_items():
@@ -1000,9 +1043,9 @@ class File(Group):
return self._mode
@property
- def h5py_class(self):
+ def h5_class(self):
"""Returns the :class:`h5py.File` class"""
- return h5py.File
+ return utils.H5Type.FILE
def __enter__(self):
return self
diff --git a/silx/io/convert.py b/silx/io/convert.py
index a2639e6..e9cbd2d 100644
--- a/silx/io/convert.py
+++ b/silx/io/convert.py
@@ -57,6 +57,10 @@ import numpy
import silx.io
from silx.io import is_dataset, is_group, is_softlink
from silx.third_party import six
+try:
+ from silx.io import fabioh5
+except ImportError:
+ fabioh5 = None
__authors__ = ["P. Knobel"]
__license__ = "MIT"
@@ -197,7 +201,6 @@ class Hdf5Writer(object):
def append_member_to_h5(self, h5like_name, obj):
"""Add one group or one dataset to :attr:`h5f`"""
h5_name = self.h5path + h5like_name.lstrip("/")
-
if is_softlink(obj):
# links to be created after all groups and datasets
h5_target = self.h5path + obj.path.lstrip("/")
@@ -213,12 +216,24 @@ class Hdf5Writer(object):
del self._h5f[h5_name]
if self.overwrite_data or not member_initially_exists:
- # fancy arguments don't apply to small dataset
- if obj.size < self.min_size:
- ds = self._h5f.create_dataset(h5_name, data=obj.value)
- else:
- ds = self._h5f.create_dataset(h5_name, data=obj.value,
+ if fabioh5 is not None and \
+ isinstance(obj, fabioh5.FrameData) and \
+ len(obj.shape) > 2:
+ # special case of multiframe data
+ # write frame by frame to save memory usage low
+ ds = self._h5f.create_dataset(h5_name,
+ shape=obj.shape,
+ dtype=obj.dtype,
**self.create_dataset_args)
+ for i, frame in enumerate(obj):
+ ds[i] = frame
+ else:
+ # fancy arguments don't apply to small dataset
+ if obj.size < self.min_size:
+ ds = self._h5f.create_dataset(h5_name, data=obj.value)
+ else:
+ ds = self._h5f.create_dataset(h5_name, data=obj.value,
+ **self.create_dataset_args)
else:
ds = self._h5f[h5_name]
diff --git a/silx/io/fabioh5.py b/silx/io/fabioh5.py
index 95eef23..0811ae0 100644
--- a/silx/io/fabioh5.py
+++ b/silx/io/fabioh5.py
@@ -44,6 +44,7 @@ import numpy
from . import commonh5
from silx.third_party import six
from silx import version as silx_version
+import silx.utils.number
try:
import h5py
@@ -106,11 +107,54 @@ class FrameData(commonh5.LazyLoadableDataset):
attrs = {"interpretation": "image"}
commonh5.LazyLoadableDataset.__init__(self, name, parent, attrs=attrs)
self.__fabio_reader = fabio_reader
-
+ self._shape = None
+ self._dtype = None
def _create_data(self):
return self.__fabio_reader.get_data()
+ def _update_cache(self):
+ if isinstance(self.__fabio_reader.fabio_file(),
+ fabio.file_series.file_series):
+ # Reading all the files is taking too much time
+ # Reach the information from the only first frame
+ first_image = self.__fabio_reader.fabio_file().first_image()
+ self._dtype = first_image.data.dtype
+ shape0 = self.__fabio_reader.frame_count()
+ shape1, shape2 = first_image.data.shape
+ self._shape = shape0, shape1, shape2
+ else:
+ self._dtype = super(commonh5.LazyLoadableDataset, self).dtype
+ self._shape = super(commonh5.LazyLoadableDataset, self).shape
+
+ @property
+ def dtype(self):
+ if self._dtype is None:
+ self._update_cache()
+ return self._dtype
+
+ @property
+ def shape(self):
+ if self._shape is None:
+ self._update_cache()
+ return self._shape
+
+ def __iter__(self):
+ for frame in self.__fabio_reader.iter_frames():
+ yield frame.data
+
+ def __getitem__(self, item):
+ # optimization for fetching a single frame if data not already loaded
+ if not self._is_initialized:
+ if isinstance(item, six.integer_types) and \
+ isinstance(self.__fabio_reader.fabio_file(),
+ fabio.file_series.file_series):
+ if item < 0:
+ # negative indexing
+ item += len(self)
+ return self.__fabio_reader.fabio_file().jump_image(item).data
+ return super(FrameData, self).__getitem__(item)
+
class RawHeaderData(commonh5.LazyLoadableDataset):
"""Lazy loadable raw header"""
@@ -638,30 +682,11 @@ class FabioReader(object):
If it is not possible it returns a numpy string.
"""
try:
- value = int(value)
- dtype = numpy.min_scalar_type(value)
- assert dtype.kind != "O"
- return dtype.type(value)
+ numpy_type = silx.utils.number.min_numerical_convertible_type(value)
+ converted = numpy_type(value)
except ValueError:
- try:
- # numpy.min_scalar_type is not able to do very well the job
- # when there is a lot of digit after the dot
- # https://github.com/numpy/numpy/issues/8207
- # Let's count the digit of the string
- digits = len(value) - 1 # minus the dot
- if digits <= 7:
- # A float32 is accurate with about 7 digits
- return numpy.float32(value)
- elif digits <= 16:
- # A float64 is accurate with about 16 digits
- return numpy.float64(value)
- else:
- if hasattr(numpy, "float128"):
- return numpy.float128(value)
- else:
- return numpy.float64(value)
- except ValueError:
- return numpy.string_(value)
+ converted = numpy.string_(value)
+ return converted
def _convert_list(self, value):
"""Convert a string into a typed numpy array.
@@ -951,7 +976,13 @@ class File(commonh5.File):
if first_file_name is not None:
_, ext = os.path.splitext(first_file_name)
ext = ext[1:]
- use_edf_reader = ext in fabio.edfimage.EdfImage.DEFAULT_EXTENSIONS
+ edfimage = fabio.edfimage.EdfImage
+ if hasattr(edfimage, "DEFAULT_EXTENTIONS"):
+ # Typo on fabio 0.5
+ edf_extensions = edfimage.DEFAULT_EXTENTIONS
+ else:
+ edf_extensions = edfimage.DEFAULT_EXTENSIONS
+ use_edf_reader = ext in edf_extensions
elif first_image is not None:
use_edf_reader = isinstance(first_image, fabio.edfimage.EdfImage)
else:
diff --git a/silx/io/nxdata/__init__.py b/silx/io/nxdata/__init__.py
new file mode 100644
index 0000000..796810f
--- /dev/null
+++ b/silx/io/nxdata/__init__.py
@@ -0,0 +1,64 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2018 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+"""
+:mod:`nxdata`: NXdata parsing and validation
+--------------------------------------------
+
+To parse an existing NXdata group, use :class:`NXdata`.
+
+Following functions help you check the validity of a existing NXdata group:
+ - :func:`is_valid_nxdata`
+ - :func:`is_NXentry_with_default_NXdata`
+ - :func:`is_NXroot_with_default_NXdata`
+
+To help you write a NXdata group, you can use :func:`save_NXdata`.
+
+.. currentmodule:: silx.io.nxdata
+
+Classes
++++++++
+
+.. autoclass:: NXdata
+ :members:
+
+
+Functions
++++++++++
+
+.. autofunction:: get_default
+
+.. autofunction:: is_valid_nxdata
+
+.. autofunction:: is_NXentry_with_default_NXdata
+
+.. autofunction:: is_NXroot_with_default_NXdata
+
+.. autofunction:: save_NXdata
+
+"""
+from .parse import NXdata, get_default, is_valid_nxdata, InvalidNXdataError, \
+ is_NXentry_with_default_NXdata, is_NXroot_with_default_NXdata
+from ._utils import get_attr_as_unicode, get_attr_as_string, nxdata_logger
+from .write import save_NXdata
diff --git a/silx/io/nxdata/_utils.py b/silx/io/nxdata/_utils.py
new file mode 100644
index 0000000..077f01d
--- /dev/null
+++ b/silx/io/nxdata/_utils.py
@@ -0,0 +1,183 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2017-2018 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+"""Utility functions used by NXdata validation and parsing."""
+
+import copy
+import numpy
+import logging
+
+from silx.io import is_dataset
+from silx.utils.deprecation import deprecated
+from silx.third_party import six
+
+
+__authors__ = ["P. Knobel"]
+__license__ = "MIT"
+__date__ = "17/04/2018"
+
+
+nxdata_logger = logging.getLogger("silx.io.nxdata")
+
+
+INTERPDIM = {"scalar": 0,
+ "spectrum": 1,
+ "image": 2,
+ "rgba-image": 3, # "hsla-image": 3, "cmyk-image": 3, # TODO
+ "vertex": 1} # 3D scatter: 1D signal + 3 axes (x, y, z) of same legth
+"""Number of signal dimensions associated to each possible @interpretation
+attribute.
+"""
+
+
+@deprecated(since_version="0.8.0", replacement="get_attr_as_unicode")
+def get_attr_as_string(*args, **kwargs):
+ return get_attr_as_unicode(*args, **kwargs)
+
+
+def get_attr_as_unicode(item, attr_name, default=None):
+ """Return item.attrs[attr_name] as unicode or as a
+ list of unicode.
+
+ Numpy arrays of strings or bytes returned by h5py are converted to
+ lists of unicode.
+
+ :param item: Group or dataset
+ :param attr_name: Attribute name
+ :param default: Value to be returned if attribute is not found.
+ :return: item.attrs[attr_name]
+ """
+ attr = item.attrs.get(attr_name, default)
+
+ if isinstance(attr, six.binary_type):
+ # byte-string
+ return attr.decode("utf-8")
+ elif isinstance(attr, numpy.ndarray) and not attr.shape:
+ if isinstance(attr[()], six.binary_type):
+ # byte string as ndarray scalar
+ return attr[()].decode("utf-8")
+ else:
+ # other scalar, possibly unicode
+ return attr[()]
+ elif isinstance(attr, numpy.ndarray) and len(attr.shape):
+ if hasattr(attr[0], "decode"):
+ # array of byte-strings
+ return [element.decode("utf-8") for element in attr]
+ else:
+ # other array, most likely unicode objects
+ return [element for element in attr]
+ else:
+ return copy.deepcopy(attr)
+
+
+def get_uncertainties_names(group, signal_name):
+ # Test consistency of @uncertainties
+ uncertainties_names = get_attr_as_unicode(group, "uncertainties")
+ if uncertainties_names is None:
+ uncertainties_names = get_attr_as_unicode(group[signal_name], "uncertainties")
+ if isinstance(uncertainties_names, six.text_type):
+ uncertainties_names = [uncertainties_names]
+ return uncertainties_names
+
+
+def get_signal_name(group):
+ """Return the name of the (main) signal in a NXdata group.
+ Return None if this info is missing (invalid NXdata).
+
+ """
+ signal_name = get_attr_as_unicode(group, "signal", default=None)
+ if signal_name is None:
+ nxdata_logger.info("NXdata group %s does not define a signal attr. "
+ "Testing legacy specification.", group.name)
+ for key in group:
+ if "signal" in group[key].attrs:
+ signal_name = key
+ signal_attr = group[key].attrs["signal"]
+ if signal_attr in [1, b"1", u"1"]:
+ # This is the main (default) signal
+ break
+ return signal_name
+
+
+def get_auxiliary_signals_names(group):
+ """Return list of auxiliary signals names"""
+ auxiliary_signals_names = get_attr_as_unicode(group, "auxiliary_signals",
+ default=[])
+ if isinstance(auxiliary_signals_names, (six.text_type, six.binary_type)):
+ auxiliary_signals_names = [auxiliary_signals_names]
+ return auxiliary_signals_names
+
+
+def validate_auxiliary_signals(group, signal_name, auxiliary_signals_names):
+ """Check data dimensionality and size. Return False if invalid."""
+ issues = []
+ for asn in auxiliary_signals_names:
+ if asn not in group or not is_dataset(group[asn]):
+ issues.append(
+ "Cannot find auxiliary signal dataset '%s'" % asn)
+ elif group[signal_name].shape != group[asn].shape:
+ issues.append("Auxiliary signal dataset '%s' does not" % asn +
+ " have the same shape as the main signal.")
+ return issues
+
+
+def validate_number_of_axes(group, signal_name, num_axes):
+ issues = []
+ ndims = len(group[signal_name].shape)
+ if 1 < ndims < num_axes:
+ # ndim = 1 with several axes could be a scatter
+ issues.append(
+ "More @axes defined than there are " +
+ "signal dimensions: " +
+ "%d axes, %d dimensions." % (num_axes, ndims))
+
+ # case of less axes than dimensions: number of axes must match
+ # dimensionality defined by @interpretation
+ elif ndims > num_axes:
+ interpretation = get_attr_as_unicode(group[signal_name], "interpretation")
+ if interpretation is None:
+ interpretation = get_attr_as_unicode(group, "interpretation")
+ if interpretation is None:
+ issues.append("No @interpretation and not enough" +
+ " @axes defined.")
+
+ elif interpretation not in INTERPDIM:
+ issues.append("Unrecognized @interpretation=" + interpretation +
+ " for data with wrong number of defined @axes.")
+ elif interpretation == "rgba-image":
+ if ndims != 3 or group[signal_name].shape[-1] not in [3, 4]:
+ issues.append(
+ "Inconsistent RGBA Image. Expected 3 dimensions with " +
+ "last one of length 3 or 4. Got ndim=%d " % ndims +
+ "with last dimension of length %d." % group[signal_name].shape[-1])
+ if num_axes != 2:
+ issues.append(
+ "Inconsistent number of axes for RGBA Image. Expected "
+ "3, but got %d." % ndims)
+
+ elif num_axes != INTERPDIM[interpretation]:
+ issues.append(
+ "%d-D signal with @interpretation=%s " % (ndims, interpretation) +
+ "must define %d or %d axes." % (ndims, INTERPDIM[interpretation]))
+ return issues
diff --git a/silx/io/nxdata.py b/silx/io/nxdata/parse.py
index cc153b0..daf1b2e 100644
--- a/silx/io/nxdata.py
+++ b/silx/io/nxdata/parse.py
@@ -22,351 +22,237 @@
# THE SOFTWARE.
#
# ###########################################################################*/
-"""This module provides a collection of functions to work with h5py-like
+"""This package provides a collection of functions to work with h5py-like
groups following the NeXus *NXdata* specification.
See http://download.nexusformat.org/sphinx/classes/base_classes/NXdata.html
-"""
-import logging
-import os
-import os.path
-import numpy
-from .utils import is_dataset, is_group, is_file
-from silx.third_party import six
+The main class is :class:`NXdata`.
+You can also fetch the default NXdata in a NXroot or a NXentry with function
+:func:`get_default`.
-try:
- import h5py
-except ImportError:
- h5py = None
-__authors__ = ["P. Knobel"]
-__license__ = "MIT"
-__date__ = "12/02/2018"
+Other public functions:
-_logger = logging.getLogger(__name__)
+ - :func:`is_valid_nxdata`
+ - :func:`is_NXroot_with_default_NXdata`
+ - :func:`is_NXentry_with_default_NXdata`
-
-_INTERPDIM = {"scalar": 0,
- "spectrum": 1,
- "image": 2,
- "rgba-image": 3, # "hsla-image": 3, "cmyk-image": 3, # TODO
- "vertex": 1} # 3D scatter: 1D signal + 3 axes (x, y, z) of same legth
-"""Number of signal dimensions associated to each possible @interpretation
-attribute.
"""
+import numpy
+from silx.io.utils import is_group, is_file, is_dataset
-def _nxdata_warning(msg, group_name=""):
- """Log a warning message prefixed with
- *"NXdata warning: "*
-
- :param str msg: Warning message
- :param str group_name: Name of NXdata group this warning relates to
- """
- warning_prefix = "NXdata warning"
- if group_name:
- warning_prefix += " (group %s): " % group_name
- else:
- warning_prefix += ": "
- _logger.warning(warning_prefix + msg)
+from ._utils import get_attr_as_unicode, INTERPDIM, nxdata_logger, \
+ get_uncertainties_names, get_signal_name, \
+ get_auxiliary_signals_names, validate_auxiliary_signals, validate_number_of_axes
+from silx.third_party import six
-def get_attr_as_string(item, attr_name, default=None):
- """Return item.attrs[attr_name]. If it is a byte-string or an array of
- byte-strings, return it as a default python string.
+__authors__ = ["P. Knobel"]
+__license__ = "MIT"
+__date__ = "17/04/2018"
- For Python 3, this involves a coercion from bytes into unicode.
- For Python 2, there is nothing special to do, as strings are bytes.
- :param item: Group or dataset
- :param attr_name: Attribute name
- :param default: Value to be returned if attribute is not found.
- :return: item.attrs[attr_name]
- """
- attr = item.attrs.get(attr_name, default)
- if six.PY2:
- if isinstance(attr, six.text_type):
- # unicode
- return attr.encode("utf-8")
- else:
- return attr
- if six.PY3:
- if hasattr(attr, "decode"):
- # byte-string
- return attr.decode("utf-8")
- elif isinstance(attr, numpy.ndarray) and not attr.shape and\
- hasattr(attr[()], "decode"):
- # byte string as ndarray scalar
- return attr[()].decode("utf-8")
- elif isinstance(attr, numpy.ndarray) and len(attr.shape) and\
- hasattr(attr[0], "decode"):
- # array of byte-strings
- return [element.decode("utf-8") for element in attr]
- else:
- # attr is not a byte-string
- return attr
+class InvalidNXdataError(Exception):
+ pass
-def is_valid_nxdata(group): # noqa
- """Check if a h5py group is a **valid** NX_data group.
+class NXdata(object):
+ """NXdata parser.
- If the group does not have attribute *@NX_class=NXdata*, this function
- simply returns *False*.
+ .. note::
- Else, warning messages are logged to troubleshoot malformed NXdata groups
- prior to returning *False*.
+ Before attempting to access any attribute or property,
+ you should check that :attr:`is_valid` is *True*.
- :param group: h5py-like group
- :return: True if this NXdata group is valid.
- :raise TypeError: if group is not a h5py group, a spech5 group,
- or a fabioh5 group
+ :param group: h5py-like group following the NeXus *NXdata* specification.
+ :param boolean validate: Set this parameter to *False* to skip the initial
+ validation. This option is provided for optimisation purposes, for cases
+ where :meth:`silx.io.nxdata.is_valid_nxdata` has already been called
+ prior to instantiating this :class:`NXdata`.
"""
- if not is_group(group):
- raise TypeError("group must be a h5py-like group")
- if get_attr_as_string(group, "NX_class") != "NXdata":
- return False
- if "signal" not in group.attrs:
- _logger.info("NXdata group %s does not define a signal attr. "
- "Testing legacy specification.", group.name)
- signal_name = None
- for key in group:
- if "signal" in group[key].attrs:
- signal_name = key
- signal_attr = group[key].attrs["signal"]
- if signal_attr in [1, b"1", u"1"]:
- # This is the main (default) signal
- break
- if signal_name is None:
- _nxdata_warning("No @signal attribute on the NXdata group, "
- "and no dataset with a @signal=1 attr found",
- group.name)
- return False
- else:
- signal_name = get_attr_as_string(group, "signal")
-
- if signal_name not in group or not is_dataset(group[signal_name]):
- _nxdata_warning(
- "Cannot find signal dataset '%s'" % signal_name,
- group.name)
- return False
-
- auxiliary_signals_names = get_attr_as_string(group, "auxiliary_signals",
- default=[])
- if isinstance(auxiliary_signals_names, (six.text_type, six.binary_type)):
- auxiliary_signals_names = [auxiliary_signals_names]
- for asn in auxiliary_signals_names:
- if asn not in group or not is_dataset(group[asn]):
- _nxdata_warning(
- "Cannot find auxiliary signal dataset '%s'" % asn,
- group.name)
- return False
- if group[signal_name].shape != group[asn].shape:
- _nxdata_warning("Auxiliary signal dataset '%s' does not" % asn +
- " have the same shape as the main signal.",
- group.name)
- return False
-
- ndim = len(group[signal_name].shape)
-
- if "axes" in group.attrs:
- axes_names = get_attr_as_string(group, "axes")
- if isinstance(axes_names, (six.text_type, six.binary_type)):
- axes_names = [axes_names]
-
- if 1 < ndim < len(axes_names):
- # ndim = 1 with several axes could be a scatter
- _nxdata_warning(
- "More @axes defined than there are " +
- "signal dimensions: " +
- "%d axes, %d dimensions." % (len(axes_names), ndim),
- group.name)
- return False
-
- # case of less axes than dimensions: number of axes must match
- # dimensionality defined by @interpretation
- if ndim > len(axes_names):
- interpretation = get_attr_as_string(group[signal_name], "interpretation")
- if interpretation is None:
- interpretation = get_attr_as_string(group, "interpretation")
- if interpretation is None:
- _nxdata_warning("No @interpretation and not enough" +
- " @axes defined.", group.name)
- return False
-
- if interpretation not in _INTERPDIM:
- _nxdata_warning("Unrecognized @interpretation=" + interpretation +
- " for data with wrong number of defined @axes.",
- group.name)
- return False
- if interpretation == "rgba-image":
- if ndim != 3 or group[signal_name].shape[-1] not in [3, 4]:
- _nxdata_warning(
- "Inconsistent RGBA Image. Expected 3 dimensions with " +
- "last one of length 3 or 4. Got ndim=%d " % ndim +
- "with last dimension of length %d." % group[signal_name].shape[-1],
- group.name)
- return False
- if len(axes_names) != 2:
- _nxdata_warning(
- "Inconsistent number of axes for RGBA Image. Expected "
- "3, but got %d." % ndim, group.name)
- return False
-
- elif len(axes_names) != _INTERPDIM[interpretation]:
- _nxdata_warning(
- "%d-D signal with @interpretation=%s " % (ndim, interpretation) +
- "must define %d or %d axes." % (ndim, _INTERPDIM[interpretation]),
- group.name)
- return False
-
- # Test consistency of @uncertainties
- uncertainties_names = get_attr_as_string(group, "uncertainties")
- if uncertainties_names is None:
- uncertainties_names = get_attr_as_string(group[signal_name], "uncertainties")
- if isinstance(uncertainties_names, str):
- uncertainties_names = [uncertainties_names]
- if uncertainties_names is not None:
- if len(uncertainties_names) != len(axes_names):
- _nxdata_warning("@uncertainties does not define the same " +
- "number of fields than @axes", group.name)
- return False
-
- # Test individual axes
- is_scatter = True # true if all axes have the same size as the signal
- signal_size = 1
- for dim in group[signal_name].shape:
- signal_size *= dim
- polynomial_axes_names = []
- for i, axis_name in enumerate(axes_names):
-
- if axis_name == ".":
- continue
- if axis_name not in group or not is_dataset(group[axis_name]):
- _nxdata_warning("Could not find axis dataset '%s'" % axis_name,
- group.name)
- return False
-
- axis_size = 1
- for dim in group[axis_name].shape:
- axis_size *= dim
-
- if len(group[axis_name].shape) != 1:
- # too me, it makes only sense to have a n-D axis if it's total
- # size is exactly the signal's size (weird n-d scatter)
- if axis_size != signal_size:
- _nxdata_warning("Axis %s is not a 1D dataset" % axis_name +
- " and its shape does not match the signal's shape",
- group.name)
- return False
- axis_len = axis_size
- else:
- # for a 1-d axis,
- fg_idx = group[axis_name].attrs.get("first_good", 0)
- lg_idx = group[axis_name].attrs.get("last_good", len(group[axis_name]) - 1)
- axis_len = lg_idx + 1 - fg_idx
-
- if axis_len != signal_size:
- if axis_len not in group[signal_name].shape + (1, 2):
- _nxdata_warning(
- "Axis %s number of elements does not " % axis_name +
- "correspond to the length of any signal dimension,"
- " it does not appear to be a constant or a linear calibration," +
- " and this does not seem to be a scatter plot.", group.name)
- return False
- elif axis_len in (1, 2):
- polynomial_axes_names.append(axis_name)
- is_scatter = False
- else:
- if not is_scatter:
- _nxdata_warning(
- "Axis %s number of elements is equal " % axis_name +
- "to the length of the signal, but this does not seem" +
- " to be a scatter (other axes have different sizes)",
- group.name)
- return False
-
- # Test individual uncertainties
- errors_name = axis_name + "_errors"
- if errors_name not in group and uncertainties_names is not None:
- errors_name = uncertainties_names[i]
- if errors_name in group and axis_name not in polynomial_axes_names:
- if group[errors_name].shape != group[axis_name].shape:
- _nxdata_warning(
- "Errors '%s' does not have the same " % errors_name +
- "dimensions as axis '%s'." % axis_name, group.name)
- return False
-
- # test dimensions of errors associated with signal
- if "errors" in group and is_dataset(group["errors"]):
- if group["errors"].shape != group[signal_name].shape:
- _nxdata_warning("Dataset containing standard deviations must " +
- "have the same dimensions as the signal.",
- group.name)
- return False
- return True
+ def __init__(self, group, validate=True):
+ super(NXdata, self).__init__()
+ self.group = group
+ """h5py-like group object with @NX_class=NXdata.
+ """
-class NXdata(object):
- """
+ self.issues = []
+ """List of error messages for malformed NXdata."""
- :param group: h5py-like group following the NeXus *NXdata* specification.
- """
- def __init__(self, group):
- if not is_valid_nxdata(group):
- raise TypeError("group is not a valid NXdata class")
- super(NXdata, self).__init__()
+ if validate:
+ self._validate()
+ self.is_valid = not self.issues
+ """Validity status for this NXdata.
+ If False, all properties and attributes will be None.
+ """
self._is_scatter = None
self._axes = None
- self.group = group
- """h5py-like group object compliant with NeXus NXdata specification.
- """
-
- self.signal = self.group[self.signal_dataset_name]
+ self.signal = None
"""Main signal dataset in this NXdata group.
-
In case more than one signal is present in this group,
the other ones can be found in :attr:`auxiliary_signals`.
"""
- self.signal_name = get_attr_as_string(self.signal, "long_name")
+ self.signal_name = None
"""Signal long name, as specified in the @long_name attribute of the
signal dataset. If not specified, the dataset name is used."""
- if self.signal_name is None:
- self.signal_name = self.signal_dataset_name
-
- # ndim will be available in very recent h5py versions only
- self.signal_ndim = getattr(self.signal, "ndim",
- len(self.signal.shape))
- self.signal_is_0d = self.signal_ndim == 0
- self.signal_is_1d = self.signal_ndim == 1
- self.signal_is_2d = self.signal_ndim == 2
- self.signal_is_3d = self.signal_ndim == 3
+ self.signal_ndim = None
+ self.signal_is_0d = None
+ self.signal_is_1d = None
+ self.signal_is_2d = None
+ self.signal_is_3d = None
- self.axes_names = []
+ self.axes_names = None
"""List of axes names in a NXdata group.
This attribute is similar to :attr:`axes_dataset_names` except that
if an axis dataset has a "@long_name" attribute, it will be used
instead of the dataset name.
"""
- # check if axis dataset defines @long_name
- for i, dsname in enumerate(self.axes_dataset_names):
- if dsname is not None and "long_name" in self.group[dsname].attrs:
- self.axes_names.append(get_attr_as_string(self.group[dsname], "long_name"))
- else:
- self.axes_names.append(dsname)
- # excludes scatters
- self.signal_is_1d = self.signal_is_1d and len(self.axes) <= 1 # excludes n-D scatters
+ if not self.is_valid:
+ nxdata_logger.debug("%s", self.issues)
+ else:
+ self.signal = self.group[self.signal_dataset_name]
+ self.signal_name = get_attr_as_unicode(self.signal, "long_name")
+
+ if self.signal_name is None:
+ self.signal_name = self.signal_dataset_name
+
+ # ndim will be available in very recent h5py versions only
+ self.signal_ndim = getattr(self.signal, "ndim",
+ len(self.signal.shape))
+
+ self.signal_is_0d = self.signal_ndim == 0
+ self.signal_is_1d = self.signal_ndim == 1
+ self.signal_is_2d = self.signal_ndim == 2
+ self.signal_is_3d = self.signal_ndim == 3
+
+ self.axes_names = []
+ # check if axis dataset defines @long_name
+ for i, dsname in enumerate(self.axes_dataset_names):
+ if dsname is not None and "long_name" in self.group[dsname].attrs:
+ self.axes_names.append(get_attr_as_unicode(self.group[dsname], "long_name"))
+ else:
+ self.axes_names.append(dsname)
+
+ # excludes scatters
+ self.signal_is_1d = self.signal_is_1d and len(self.axes) <= 1 # excludes n-D scatters
+
+ def _validate(self):
+ """Fill :attr:`issues` with error messages for each error found."""
+ if not is_group(self.group):
+ raise TypeError("group must be a h5py-like group")
+ if get_attr_as_unicode(self.group, "NX_class") != "NXdata":
+ self.issues.append("Group has no attribute @NX_class='NXdata'")
+
+ signal_name = get_signal_name(self.group)
+ if signal_name is None:
+ self.issues.append("No @signal attribute on the NXdata group, "
+ "and no dataset with a @signal=1 attr found")
+ # very difficult to do more consistency tests without signal
+ return
+
+ elif signal_name not in self.group or not is_dataset(self.group[signal_name]):
+ self.issues.append("Cannot find signal dataset '%s'" % signal_name)
+ return
+
+ auxiliary_signals_names = get_auxiliary_signals_names(self.group)
+ self.issues += validate_auxiliary_signals(self.group,
+ signal_name,
+ auxiliary_signals_names)
+
+ if "axes" in self.group.attrs:
+ axes_names = get_attr_as_unicode(self.group, "axes")
+ if isinstance(axes_names, (six.text_type, six.binary_type)):
+ axes_names = [axes_names]
+
+ self.issues += validate_number_of_axes(self.group, signal_name,
+ num_axes=len(axes_names))
+
+ # Test consistency of @uncertainties
+ uncertainties_names = get_uncertainties_names(self.group, signal_name)
+ if uncertainties_names is not None:
+ if len(uncertainties_names) != len(axes_names):
+ self.issues.append("@uncertainties does not define the same " +
+ "number of fields than @axes")
+
+ # Test individual axes
+ is_scatter = True # true if all axes have the same size as the signal
+ signal_size = 1
+ for dim in self.group[signal_name].shape:
+ signal_size *= dim
+ polynomial_axes_names = []
+ for i, axis_name in enumerate(axes_names):
+
+ if axis_name == ".":
+ continue
+ if axis_name not in self.group or not is_dataset(self.group[axis_name]):
+ self.issues.append("Could not find axis dataset '%s'" % axis_name)
+ continue
+
+ axis_size = 1
+ for dim in self.group[axis_name].shape:
+ axis_size *= dim
+
+ if len(self.group[axis_name].shape) != 1:
+ # I don't know how to interpret n-D axes
+ self.issues.append("Axis %s is not 1D" % axis_name)
+ continue
+ else:
+ # for a 1-d axis,
+ fg_idx = self.group[axis_name].attrs.get("first_good", 0)
+ lg_idx = self.group[axis_name].attrs.get("last_good", len(self.group[axis_name]) - 1)
+ axis_len = lg_idx + 1 - fg_idx
+
+ if axis_len != signal_size:
+ if axis_len not in self.group[signal_name].shape + (1, 2):
+ self.issues.append(
+ "Axis %s number of elements does not " % axis_name +
+ "correspond to the length of any signal dimension,"
+ " it does not appear to be a constant or a linear calibration," +
+ " and this does not seem to be a scatter plot.")
+ continue
+ elif axis_len in (1, 2):
+ polynomial_axes_names.append(axis_name)
+ is_scatter = False
+ else:
+ if not is_scatter:
+ self.issues.append(
+ "Axis %s number of elements is equal " % axis_name +
+ "to the length of the signal, but this does not seem" +
+ " to be a scatter (other axes have different sizes)")
+ continue
+
+ # Test individual uncertainties
+ errors_name = axis_name + "_errors"
+ if errors_name not in self.group and uncertainties_names is not None:
+ errors_name = uncertainties_names[i]
+ if errors_name in self.group and axis_name not in polynomial_axes_names:
+ if self.group[errors_name].shape != self.group[axis_name].shape:
+ self.issues.append(
+ "Errors '%s' does not have the same " % errors_name +
+ "dimensions as axis '%s'." % axis_name)
+
+ # test dimensions of errors associated with signal
+ if "errors" in self.group and is_dataset(self.group["errors"]):
+ if self.group["errors"].shape != self.group[signal_name].shape:
+ self.issues.append(
+ "Dataset containing standard deviations must " +
+ "have the same dimensions as the signal.")
@property
def signal_dataset_name(self):
"""Name of the main signal dataset."""
- signal_dataset_name = get_attr_as_string(self.group, "signal")
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+ signal_dataset_name = get_attr_as_unicode(self.group, "signal")
if signal_dataset_name is None:
# find a dataset with @signal == 1
for dsname in self.group:
@@ -389,9 +275,11 @@ class NXdata(object):
but has a dataset with an attribute *@signal=1*,
we look for datasets with attributes *@signal=2, @signal=3...*
(deprecated NXdata specification)."""
- signal_dataset_name = get_attr_as_string(self.group, "signal")
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+ signal_dataset_name = get_attr_as_unicode(self.group, "signal")
if signal_dataset_name is not None:
- auxiliary_signals_names = get_attr_as_string(self.group, "auxiliary_signals")
+ auxiliary_signals_names = get_attr_as_unicode(self.group, "auxiliary_signals")
if auxiliary_signals_names is not None:
if not isinstance(auxiliary_signals_names,
(tuple, list, numpy.ndarray)):
@@ -409,16 +297,16 @@ class NXdata(object):
ds = self.group[dsname]
signal_attr = ds.attrs.get("signal")
if signal_attr is not None and not is_dataset(ds):
- _logger.warning("Item %s with @signal=%s is not a dataset (%s)",
- dsname, signal_attr, type(ds))
+ nxdata_logger.warning("Item %s with @signal=%s is not a dataset (%s)",
+ dsname, signal_attr, type(ds))
continue
if signal_attr is not None:
try:
signal_number = int(signal_attr)
except (ValueError, TypeError):
- _logger.warning("Could not parse attr @signal=%s on "
- "dataset %s as an int",
- signal_attr, dsname)
+ nxdata_logger.warning("Could not parse attr @signal=%s on "
+ "dataset %s as an int",
+ signal_attr, dsname)
continue
numbered_names.append((signal_number, dsname))
return [a[1] for a in sorted(numbered_names)]
@@ -430,6 +318,9 @@ class NXdata(object):
Similar to :attr:`auxiliary_signals_dataset_names`, but the @long_name
is used when this attribute is present, instead of the dataset name.
"""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
signal_names = []
for asdn in self.auxiliary_signals_dataset_names:
if "long_name" in self.group[asdn].attrs:
@@ -441,6 +332,9 @@ class NXdata(object):
@property
def auxiliary_signals(self):
"""List of all auxiliary signal datasets."""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
return [self.group[dsname] for dsname in self.auxiliary_signals_dataset_names]
@property
@@ -467,17 +361,20 @@ class NXdata(object):
of the allowed values, but no error is raised and the unknown
interpretation is returned anyway.
"""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
allowed_interpretations = [None, "scalar", "spectrum", "image",
"rgba-image", # "hsla-image", "cmyk-image"
"vertex"]
- interpretation = get_attr_as_string(self.signal, "interpretation")
+ interpretation = get_attr_as_unicode(self.signal, "interpretation")
if interpretation is None:
- interpretation = get_attr_as_string(self.group, "interpretation")
+ interpretation = get_attr_as_unicode(self.group, "interpretation")
if interpretation not in allowed_interpretations:
- _logger.warning("Interpretation %s is not valid." % interpretation +
- " Valid values: " + ", ".join(allowed_interpretations))
+ nxdata_logger.warning("Interpretation %s is not valid." % interpretation +
+ " Valid values: " + ", ".join(allowed_interpretations))
return interpretation
@property
@@ -510,6 +407,9 @@ class NXdata(object):
:rtype: List[Dataset or 1D array or None]
"""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
if self._axes is not None:
# use cache
return self._axes
@@ -544,11 +444,14 @@ class NXdata(object):
"." in that position in the *@axes* array), `None` is inserted in the
output list in its position.
"""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
numbered_names = [] # used in case of @axis=0 (old spec)
- axes_dataset_names = get_attr_as_string(self.group, "axes")
+ axes_dataset_names = get_attr_as_unicode(self.group, "axes")
if axes_dataset_names is None:
# try @axes on signal dataset (older NXdata specification)
- axes_dataset_names = get_attr_as_string(self.signal, "axes")
+ axes_dataset_names = get_attr_as_unicode(self.signal, "axes")
if axes_dataset_names is not None:
# we expect a comma separated string
if hasattr(axes_dataset_names, "split"):
@@ -563,8 +466,8 @@ class NXdata(object):
try:
axis_num = int(axis_attr)
except (ValueError, TypeError):
- _logger.warning("Could not interpret attr @axis as"
- "int on dataset %s", dsname)
+ nxdata_logger.warning("Could not interpret attr @axis as"
+ "int on dataset %s", dsname)
continue
numbered_names.append((axis_num, dsname))
@@ -599,8 +502,8 @@ class NXdata(object):
if self.interpretation != "rgba-image":
# @axes may only define 1 or 2 axes if @interpretation=spectrum/image.
# Use the existing names for the last few dims, and prepend with Nones.
- assert len(axes_dataset_names) == _INTERPDIM[self.interpretation]
- all_dimensions_names = [None] * (ndims - _INTERPDIM[self.interpretation])
+ assert len(axes_dataset_names) == INTERPDIM[self.interpretation]
+ all_dimensions_names = [None] * (ndims - INTERPDIM[self.interpretation])
for axis_name in axes_dataset_names:
all_dimensions_names.append(axis_name)
else:
@@ -625,6 +528,9 @@ class NXdata(object):
dataset or an axis dataset happened to be called "title", we also
support providing the title as an attribute of the NXdata group.
"""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
title = self.group.get("title")
data_dataset_names = [self.signal_name] + self.axes_dataset_names
if (title is not None and is_dataset(title) and
@@ -647,13 +553,16 @@ class NXdata(object):
:return: Dataset with axis errors, or None
:raise KeyError: if this group does not contain a dataset named axis_name
"""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
# ensure axis_name is decoded, before comparing it with decoded attributes
if hasattr(axis_name, "decode"):
axis_name = axis_name.decode("utf-8")
if axis_name not in self.group:
# tolerate axis_name given as @long_name
for item in self.group:
- long_name = get_attr_as_string(self.group[item], "long_name")
+ long_name = get_attr_as_unicode(self.group[item], "long_name")
if long_name is not None and long_name == axis_name:
axis_name = item
break
@@ -674,17 +583,17 @@ class NXdata(object):
else:
return self.group[errors_name]
# case of uncertainties dataset name provided in @uncertainties
- uncertainties_names = get_attr_as_string(self.group, "uncertainties")
+ uncertainties_names = get_attr_as_unicode(self.group, "uncertainties")
if uncertainties_names is None:
- uncertainties_names = get_attr_as_string(self.signal, "uncertainties")
- if isinstance(uncertainties_names, str):
+ uncertainties_names = get_attr_as_unicode(self.signal, "uncertainties")
+ if isinstance(uncertainties_names, six.text_type):
uncertainties_names = [uncertainties_names]
if uncertainties_names is not None:
# take the uncertainty with the same index as the axis in @axes
- axes_ds_names = get_attr_as_string(self.group, "axes")
+ axes_ds_names = get_attr_as_unicode(self.group, "axes")
if axes_ds_names is None:
- axes_ds_names = get_attr_as_string(self.signal, "axes")
- if isinstance(axes_ds_names, str):
+ axes_ds_names = get_attr_as_unicode(self.signal, "axes")
+ if isinstance(axes_ds_names, six.text_type):
axes_ds_names = [axes_ds_names]
elif isinstance(axes_ds_names, numpy.ndarray):
# transform numpy.ndarray into list
@@ -708,6 +617,9 @@ class NXdata(object):
:return: Dataset with errors, or None
"""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
if "errors" not in self.group:
return None
return self.group["errors"]
@@ -716,6 +628,9 @@ class NXdata(object):
def is_scatter(self):
"""True if the signal is 1D and all the axes have the
same size as the signal."""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
if self._is_scatter is not None:
return self._is_scatter
if not self.signal_is_1d:
@@ -737,12 +652,18 @@ class NXdata(object):
@property
def is_x_y_value_scatter(self):
"""True if this is a scatter with a signal and two axes."""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
return self.is_scatter and len(self.axes) == 2
# we currently have no widget capable of plotting 4D data
@property
def is_unsupported_scatter(self):
"""True if this is a scatter with a signal and more than 2 axes."""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
return self.is_scatter and len(self.axes) > 2
@property
@@ -750,6 +671,9 @@ class NXdata(object):
"""This property is True if the signal is 1D or :attr:`interpretation` is
*"spectrum"*, and there is at most one axis with a consistent length.
"""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
if self.signal_is_0d or self.interpretation not in [None, "spectrum"]:
return False
# the axis, if any, must be of the same length as the last dimension
@@ -770,12 +694,15 @@ class NXdata(object):
and interpretation *rgba-image*, or >2D with interpretation *image*.
The axes (if any) length must also be consistent with the signal shape.
"""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
if self.interpretation in ["scalar", "spectrum", "scaler"]:
return False
if self.signal_is_0d or self.signal_is_1d:
return False
if not self.signal_is_2d and \
- self.interpretation not in ["image", "rgba-image"]:
+ self.interpretation not in ["image", "rgba-image"]:
return False
if self.signal_is_3d and self.interpretation == "rgba-image":
if self.signal.shape[-1] not in [3, 4]:
@@ -798,6 +725,9 @@ class NXdata(object):
The axes length must also be consistent with the last 3 dimensions
of the signal.
"""
+ if not self.is_valid:
+ raise InvalidNXdataError("Unable to parse invalid NXdata")
+
if self.signal_ndim < 3 or self.interpretation in [
"scalar", "scaler", "spectrum", "image", "rgba-image"]:
return False
@@ -808,13 +738,30 @@ class NXdata(object):
return True
-def is_NXentry_with_default_NXdata(group):
+def is_valid_nxdata(group): # noqa
+ """Check if a h5py group is a **valid** NX_data group.
+
+ :param group: h5py-like group
+ :return: True if this NXdata group is valid.
+ :raise TypeError: if group is not a h5py group, a spech5 group,
+ or a fabioh5 group
+ """
+ nxd = NXdata(group)
+ return nxd.is_valid
+
+
+def is_NXentry_with_default_NXdata(group, validate=True):
"""Return True if group is a valid NXentry defining a valid default
- NXdata."""
+ NXdata.
+
+ :param group: h5py-like object.
+ :param bool validate: Set this to False if you are sure that the target group
+ is valid NXdata (i.e. :func:`silx.io.nxdata.is_valid_nxdata(target_group)`
+ returns True). Parameter provided for optimisation purposes."""
if not is_group(group):
return False
- if get_attr_as_string(group, "NX_class") != "NXentry":
+ if get_attr_as_unicode(group, "NX_class") != "NXentry":
return False
default_nxdata_name = group.attrs.get("default")
@@ -826,12 +773,21 @@ def is_NXentry_with_default_NXdata(group):
if not is_group(default_nxdata_group):
return False
- return is_valid_nxdata(default_nxdata_group)
+ if not validate:
+ return True
+ else:
+ return is_valid_nxdata(default_nxdata_group)
-def is_NXroot_with_default_NXdata(group):
+def is_NXroot_with_default_NXdata(group, validate=True):
"""Return True if group is a valid NXroot defining a default NXentry
- defining a valid default NXdata."""
+ defining a valid default NXdata.
+
+ :param group: h5py-like object.
+ :param bool validate: Set this to False if you are sure that the target group
+ is valid NXdata (i.e. :func:`silx.io.nxdata.is_valid_nxdata(target_group)`
+ returns True). Parameter provided for optimisation purposes.
+ """
if not is_group(group):
return False
@@ -839,7 +795,7 @@ def is_NXroot_with_default_NXdata(group):
# is therefore optional. We accept groups that are not located at the root
# if they have @NX_class=NXroot (use case: several nexus files archived
# in a single HDF5 file)
- if get_attr_as_string(group, "NX_class") != "NXroot" and not is_file(group):
+ if get_attr_as_unicode(group, "NX_class") != "NXroot" and not is_file(group):
return False
default_nxentry_name = group.attrs.get("default")
@@ -847,10 +803,11 @@ def is_NXroot_with_default_NXdata(group):
return False
default_nxentry_group = group.get(default_nxentry_name)
- return is_NXentry_with_default_NXdata(default_nxentry_group)
+ return is_NXentry_with_default_NXdata(default_nxentry_group,
+ validate=validate)
-def get_default(group):
+def get_default(group, validate=True):
"""Return a :class:`NXdata` object corresponding to the default NXdata group
in the group specified as parameter.
@@ -862,185 +819,23 @@ def get_default(group):
:param group: h5py-like group following the Nexus specification
(NXdata, NXentry or NXroot).
+ :param bool validate: Set this to False if you are sure that group
+ is valid NXdata (i.e. :func:`silx.io.nxdata.is_valid_nxdata(group)`
+ returns True). Parameter provided for optimisation purposes.
:return: :class:`NXdata` object or None
:raise TypeError: if group is not a h5py-like group
"""
if not is_group(group):
raise TypeError("Provided parameter is not a h5py-like group")
- if is_NXroot_with_default_NXdata(group):
+ if is_NXroot_with_default_NXdata(group, validate=validate):
default_entry = group[group.attrs["default"]]
default_data = default_entry[default_entry.attrs["default"]]
- elif is_NXentry_with_default_NXdata(group):
+ elif is_NXentry_with_default_NXdata(group, validate=validate):
default_data = group[group.attrs["default"]]
- elif is_valid_nxdata(group):
+ elif not validate or is_valid_nxdata(group):
default_data = group
else:
return None
- return NXdata(default_data)
-
-
-def _str_to_utf8(text):
- return numpy.array(text, dtype=h5py.special_dtype(vlen=six.text_type))
-
-
-def save_NXdata(filename, signal, axes=None,
- signal_name="data", axes_names=None,
- signal_long_name=None, axes_long_names=None,
- signal_errors=None, axes_errors=None,
- title=None, interpretation=None,
- nxentry_name="entry", nxdata_name=None):
- """Write data to an NXdata group.
-
- .. note::
-
- No consistency checks are made regarding the dimensionality of the
- signal and number of axes. The user is responsible for providing
- meaningful data, that can be interpreted by visualization software.
-
- :param str filename: Path to output file. If the file does not
- exists, it is created.
- :param numpy.ndarray signal: Signal array.
- :param List[numpy.ndarray] axes: List of axes arrays.
- :param str signal_name: Name of signal dataset, in output file
- :param List[str] axes_names: List of dataset names for axes, in
- output file
- :param str signal_long_name: *@long_name* attribute for signal, or None.
- :param axes_long_names: None, or list of long names
- for axes
- :type axes_long_names: List[str, None]
- :param numpy.ndarray signal_errors: Array of errors associated with the
- signal
- :param axes_errors: List of arrays of errors
- associated with each axis
- :type axes_errors: List[numpy.ndarray, None]
- :param str title: Graph title (saved as a "title" dataset) or None.
- :param str interpretation: *@interpretation* attribute ("spectrum",
- "image", "rgba-image" or None). This is only needed in cases of
- ambiguous dimensionality, e.g. a 3D array which represents a RGBA
- image rather than a stack.
- :param str nxentry_name: Name of group in which the NXdata group
- is created. By default, "/entry" is used.
-
- .. note::
-
- The Nexus format specification requires for NXdata groups
- be part of a NXentry group.
- The specified group should have attribute *@NX_class=NXentry*, in
- order for the created file to be nexus compliant.
- :param str nxdata_name: Name of NXdata group. If omitted (None), the
- function creates a new group using the first available name ("data0",
- or "data1"...).
- Overwriting an existing group (or dataset) is not supported, you must
- delete it yourself prior to calling this function if this is what you
- want.
- :return: True if save was successful, else False.
- """
- if h5py is None:
- raise ImportError("h5py could not be imported, but is required by "
- "save_NXdata function")
-
- if axes_names is not None:
- assert axes is not None, "Axes names defined, but missing axes arrays"
- assert len(axes) == len(axes_names), \
- "Mismatch between number of axes and axes_names"
-
- if axes is not None and axes_names is None:
- axes_names = []
- for i, axis in enumerate(axes):
- axes_names.append("dim%d" % i if axis is not None else ".")
- if axes is None:
- axes = []
-
- # Open file in
- if os.path.exists(filename):
- errmsg = "Cannot write/append to existing path %s"
- if not os.path.isfile(filename):
- errmsg += " (not a file)"
- _logger.error(errmsg, filename)
- return False
- if not os.access(filename, os.W_OK):
- errmsg += " (no permission to write)"
- _logger.error(errmsg, filename)
- return False
- mode = "r+"
- else:
- mode = "w-"
-
- with h5py.File(filename, mode=mode) as h5f:
- # get or create entry
- if nxentry_name is not None:
- entry = h5f.require_group(nxentry_name)
- if "default" not in h5f.attrs:
- # set this entry as default
- h5f.attrs["default"] = _str_to_utf8(nxentry_name)
- if "NX_class" not in entry.attrs:
- entry.attrs["NX_class"] = u"NXentry"
- else:
- # write NXdata into the root of the file (invalid nexus!)
- entry = h5f
-
- # Create NXdata group
- if nxdata_name is not None:
- if nxdata_name in entry:
- _logger.error("Cannot assign an NXdata group to an existing"
- " group or dataset")
- return False
- else:
- # no name specified, take one that is available
- nxdata_name = "data0"
- i = 1
- while nxdata_name in entry:
- _logger.info("%s item already exists in NXentry group," +
- " trying %s", nxdata_name, "data%d" % i)
- nxdata_name = "data%d" % i
- i += 1
-
- data_group = entry.create_group(nxdata_name)
- data_group.attrs["NX_class"] = u"NXdata"
- data_group.attrs["signal"] = _str_to_utf8(signal_name)
- if axes:
- data_group.attrs["axes"] = _str_to_utf8(axes_names)
- if title:
- # not in NXdata spec, but implemented by nexpy
- data_group["title"] = title
- # better way imho
- data_group.attrs["title"] = _str_to_utf8(title)
-
- signal_dataset = data_group.create_dataset(signal_name,
- data=signal)
- if signal_long_name:
- signal_dataset.attrs["long_name"] = _str_to_utf8(signal_long_name)
- if interpretation:
- signal_dataset.attrs["interpretation"] = _str_to_utf8(interpretation)
-
- for i, axis_array in enumerate(axes):
- if axis_array is None:
- assert axes_names[i] in [".", None], \
- "Axis name defined for dim %d but no axis array" % i
- continue
- axis_dataset = data_group.create_dataset(axes_names[i],
- data=axis_array)
- if axes_long_names is not None:
- axis_dataset.attrs["long_name"] = _str_to_utf8(axes_long_names[i])
-
- if signal_errors is not None:
- data_group.create_dataset("errors",
- data=signal_errors)
-
- if axes_errors is not None:
- assert isinstance(axes_errors, (list, tuple)), \
- "axes_errors must be a list or a tuple of ndarray or None"
- assert len(axes_errors) == len(axes_names), \
- "Mismatch between number of axes_errors and axes_names"
- for i, axis_errors in enumerate(axes_errors):
- if axis_errors is not None:
- dsname = axes_names[i] + "_errors"
- data_group.create_dataset(dsname,
- data=axis_errors)
- if "default" not in entry.attrs:
- # set this NXdata as default
- entry.attrs["default"] = nxdata_name
-
- return True
+ return NXdata(default_data, validate=False)
diff --git a/silx/io/nxdata/write.py b/silx/io/nxdata/write.py
new file mode 100644
index 0000000..05eef4d
--- /dev/null
+++ b/silx/io/nxdata/write.py
@@ -0,0 +1,202 @@
+# coding: utf-8
+# /*##########################################################################
+#
+# Copyright (c) 2017-2018 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ###########################################################################*/
+
+import h5py
+import os
+import logging
+import numpy
+from silx.third_party import six
+
+__authors__ = ["P. Knobel"]
+__license__ = "MIT"
+__date__ = "17/04/2018"
+
+
+_logger = logging.getLogger(__name__)
+
+
+def _str_to_utf8(text):
+ return numpy.array(text, dtype=h5py.special_dtype(vlen=six.text_type))
+
+
+def save_NXdata(filename, signal, axes=None,
+ signal_name="data", axes_names=None,
+ signal_long_name=None, axes_long_names=None,
+ signal_errors=None, axes_errors=None,
+ title=None, interpretation=None,
+ nxentry_name="entry", nxdata_name=None):
+ """Write data to an NXdata group.
+
+ .. note::
+
+ No consistency checks are made regarding the dimensionality of the
+ signal and number of axes. The user is responsible for providing
+ meaningful data, that can be interpreted by visualization software.
+
+ :param str filename: Path to output file. If the file does not
+ exists, it is created.
+ :param numpy.ndarray signal: Signal array.
+ :param List[numpy.ndarray] axes: List of axes arrays.
+ :param str signal_name: Name of signal dataset, in output file
+ :param List[str] axes_names: List of dataset names for axes, in
+ output file
+ :param str signal_long_name: *@long_name* attribute for signal, or None.
+ :param axes_long_names: None, or list of long names
+ for axes
+ :type axes_long_names: List[str, None]
+ :param numpy.ndarray signal_errors: Array of errors associated with the
+ signal
+ :param axes_errors: List of arrays of errors
+ associated with each axis
+ :type axes_errors: List[numpy.ndarray, None]
+ :param str title: Graph title (saved as a "title" dataset) or None.
+ :param str interpretation: *@interpretation* attribute ("spectrum",
+ "image", "rgba-image" or None). This is only needed in cases of
+ ambiguous dimensionality, e.g. a 3D array which represents a RGBA
+ image rather than a stack.
+ :param str nxentry_name: Name of group in which the NXdata group
+ is created. By default, "/entry" is used.
+
+ .. note::
+
+ The Nexus format specification requires for NXdata groups
+ be part of a NXentry group.
+ The specified group should have attribute *@NX_class=NXentry*, in
+ order for the created file to be nexus compliant.
+ :param str nxdata_name: Name of NXdata group. If omitted (None), the
+ function creates a new group using the first available name ("data0",
+ or "data1"...).
+ Overwriting an existing group (or dataset) is not supported, you must
+ delete it yourself prior to calling this function if this is what you
+ want.
+ :return: True if save was successful, else False.
+ """
+ if h5py is None:
+ raise ImportError("h5py could not be imported, but is required by "
+ "save_NXdata function")
+
+ if axes_names is not None:
+ assert axes is not None, "Axes names defined, but missing axes arrays"
+ assert len(axes) == len(axes_names), \
+ "Mismatch between number of axes and axes_names"
+
+ if axes is not None and axes_names is None:
+ axes_names = []
+ for i, axis in enumerate(axes):
+ axes_names.append("dim%d" % i if axis is not None else ".")
+ if axes is None:
+ axes = []
+
+ # Open file in
+ if os.path.exists(filename):
+ errmsg = "Cannot write/append to existing path %s"
+ if not os.path.isfile(filename):
+ errmsg += " (not a file)"
+ _logger.error(errmsg, filename)
+ return False
+ if not os.access(filename, os.W_OK):
+ errmsg += " (no permission to write)"
+ _logger.error(errmsg, filename)
+ return False
+ mode = "r+"
+ else:
+ mode = "w-"
+
+ with h5py.File(filename, mode=mode) as h5f:
+ # get or create entry
+ if nxentry_name is not None:
+ entry = h5f.require_group(nxentry_name)
+ if "default" not in h5f.attrs:
+ # set this entry as default
+ h5f.attrs["default"] = _str_to_utf8(nxentry_name)
+ if "NX_class" not in entry.attrs:
+ entry.attrs["NX_class"] = u"NXentry"
+ else:
+ # write NXdata into the root of the file (invalid nexus!)
+ entry = h5f
+
+ # Create NXdata group
+ if nxdata_name is not None:
+ if nxdata_name in entry:
+ _logger.error("Cannot assign an NXdata group to an existing"
+ " group or dataset")
+ return False
+ else:
+ # no name specified, take one that is available
+ nxdata_name = "data0"
+ i = 1
+ while nxdata_name in entry:
+ _logger.info("%s item already exists in NXentry group," +
+ " trying %s", nxdata_name, "data%d" % i)
+ nxdata_name = "data%d" % i
+ i += 1
+
+ data_group = entry.create_group(nxdata_name)
+ data_group.attrs["NX_class"] = u"NXdata"
+ data_group.attrs["signal"] = _str_to_utf8(signal_name)
+ if axes:
+ data_group.attrs["axes"] = _str_to_utf8(axes_names)
+ if title:
+ # not in NXdata spec, but implemented by nexpy
+ data_group["title"] = title
+ # better way imho
+ data_group.attrs["title"] = _str_to_utf8(title)
+
+ signal_dataset = data_group.create_dataset(signal_name,
+ data=signal)
+ if signal_long_name:
+ signal_dataset.attrs["long_name"] = _str_to_utf8(signal_long_name)
+ if interpretation:
+ signal_dataset.attrs["interpretation"] = _str_to_utf8(interpretation)
+
+ for i, axis_array in enumerate(axes):
+ if axis_array is None:
+ assert axes_names[i] in [".", None], \
+ "Axis name defined for dim %d but no axis array" % i
+ continue
+ axis_dataset = data_group.create_dataset(axes_names[i],
+ data=axis_array)
+ if axes_long_names is not None:
+ axis_dataset.attrs["long_name"] = _str_to_utf8(axes_long_names[i])
+
+ if signal_errors is not None:
+ data_group.create_dataset("errors",
+ data=signal_errors)
+
+ if axes_errors is not None:
+ assert isinstance(axes_errors, (list, tuple)), \
+ "axes_errors must be a list or a tuple of ndarray or None"
+ assert len(axes_errors) == len(axes_names), \
+ "Mismatch between number of axes_errors and axes_names"
+ for i, axis_errors in enumerate(axes_errors):
+ if axis_errors is not None:
+ dsname = axes_names[i] + "_errors"
+ data_group.create_dataset(dsname,
+ data=axis_errors)
+ if "default" not in entry.attrs:
+ # set this NXdata as default
+ entry.attrs["default"] = nxdata_name
+
+ return True
diff --git a/silx/io/setup.py b/silx/io/setup.py
index 971d358..4aaf324 100644
--- a/silx/io/setup.py
+++ b/silx/io/setup.py
@@ -4,7 +4,7 @@
#
# /*##########################################################################
#
-# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
+# Copyright (c) 2016-2018 European Synchrotron Radiation Facility
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
@@ -33,7 +33,6 @@ __date__ = "03/10/2016"
import os
import sys
-import numpy
from numpy.distutils.misc_util import Configuration
@@ -67,6 +66,7 @@ else:
def configuration(parent_package='', top_path=None):
config = Configuration('io', parent_package, top_path)
config.add_subpackage('test')
+ config.add_subpackage('nxdata')
srcfiles = ['sfheader', 'sfinit', 'sflists', 'sfdata', 'sfindex',
'sflabel', 'sfmca', 'sftools', 'locale_management']
@@ -76,8 +76,7 @@ def configuration(parent_package='', top_path=None):
config.add_extension('specfile',
sources=sources,
define_macros=define_macros,
- include_dirs=[os.path.join('specfile', 'include'),
- numpy.get_include()],
+ include_dirs=[os.path.join('specfile', 'include')],
language='c')
return config
diff --git a/silx/io/specfile.c b/silx/io/specfile.c
index a95282a..ca67473 100644
--- a/silx/io/specfile.c
+++ b/silx/io/specfile.c
@@ -1,28 +1,51 @@
-/* Generated by Cython 0.21.1 */
+/* Generated by Cython 0.28.3 */
+
+/* BEGIN: Cython Metadata
+{
+ "distutils": {
+ "define_macros": [
+ [
+ "SPECFILE_POSIX",
+ null
+ ]
+ ],
+ "depends": [
+ "silx/io/specfile/include/SpecFileCython.h"
+ ],
+ "include_dirs": [
+ "silx/io/specfile/include"
+ ],
+ "language": "c",
+ "name": "silx.io.specfile",
+ "sources": [
+ "silx/io/specfile.pyx",
+ "silx/io/specfile/src/sfheader.c",
+ "silx/io/specfile/src/sfinit.c",
+ "silx/io/specfile/src/sflists.c",
+ "silx/io/specfile/src/sfdata.c",
+ "silx/io/specfile/src/sfindex.c",
+ "silx/io/specfile/src/sflabel.c",
+ "silx/io/specfile/src/sfmca.c",
+ "silx/io/specfile/src/sftools.c",
+ "silx/io/specfile/src/locale_management.c"
+ ]
+ },
+ "module_name": "silx.io.specfile"
+}
+END: Cython Metadata */
#define PY_SSIZE_T_CLEAN
-#ifndef CYTHON_USE_PYLONG_INTERNALS
-#ifdef PYLONG_BITS_IN_DIGIT
-#define CYTHON_USE_PYLONG_INTERNALS 0
-#else
-#include "pyconfig.h"
-#ifdef PYLONG_BITS_IN_DIGIT
-#define CYTHON_USE_PYLONG_INTERNALS 1
-#else
-#define CYTHON_USE_PYLONG_INTERNALS 0
-#endif
-#endif
-#endif
#include "Python.h"
#ifndef Py_PYTHON_H
#error Python headers needed to compile C extensions, please install development version of Python.
-#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000)
- #error Cython requires Python 2.6+ or Python 3.2+.
+#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000)
+ #error Cython requires Python 2.6+ or Python 3.3+.
#else
-#define CYTHON_ABI "0_21_1"
+#define CYTHON_ABI "0_28_3"
+#define CYTHON_FUTURE_DIVISION 0
#include <stddef.h>
#ifndef offsetof
-#define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
+ #define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
#endif
#if !defined(WIN32) && !defined(MS_WINDOWS)
#ifndef __stdcall
@@ -41,6 +64,12 @@
#ifndef DL_EXPORT
#define DL_EXPORT(t) t
#endif
+#define __PYX_COMMA ,
+#ifndef HAVE_LONG_LONG
+ #if PY_VERSION_HEX >= 0x02070000
+ #define HAVE_LONG_LONG
+ #endif
+#endif
#ifndef PY_LONG_LONG
#define PY_LONG_LONG LONG_LONG
#endif
@@ -48,63 +77,399 @@
#define Py_HUGE_VAL HUGE_VAL
#endif
#ifdef PYPY_VERSION
-#define CYTHON_COMPILING_IN_PYPY 1
-#define CYTHON_COMPILING_IN_CPYTHON 0
+ #define CYTHON_COMPILING_IN_PYPY 1
+ #define CYTHON_COMPILING_IN_PYSTON 0
+ #define CYTHON_COMPILING_IN_CPYTHON 0
+ #undef CYTHON_USE_TYPE_SLOTS
+ #define CYTHON_USE_TYPE_SLOTS 0
+ #undef CYTHON_USE_PYTYPE_LOOKUP
+ #define CYTHON_USE_PYTYPE_LOOKUP 0
+ #if PY_VERSION_HEX < 0x03050000
+ #undef CYTHON_USE_ASYNC_SLOTS
+ #define CYTHON_USE_ASYNC_SLOTS 0
+ #elif !defined(CYTHON_USE_ASYNC_SLOTS)
+ #define CYTHON_USE_ASYNC_SLOTS 1
+ #endif
+ #undef CYTHON_USE_PYLIST_INTERNALS
+ #define CYTHON_USE_PYLIST_INTERNALS 0
+ #undef CYTHON_USE_UNICODE_INTERNALS
+ #define CYTHON_USE_UNICODE_INTERNALS 0
+ #undef CYTHON_USE_UNICODE_WRITER
+ #define CYTHON_USE_UNICODE_WRITER 0
+ #undef CYTHON_USE_PYLONG_INTERNALS
+ #define CYTHON_USE_PYLONG_INTERNALS 0
+ #undef CYTHON_AVOID_BORROWED_REFS
+ #define CYTHON_AVOID_BORROWED_REFS 1
+ #undef CYTHON_ASSUME_SAFE_MACROS
+ #define CYTHON_ASSUME_SAFE_MACROS 0
+ #undef CYTHON_UNPACK_METHODS
+ #define CYTHON_UNPACK_METHODS 0
+ #undef CYTHON_FAST_THREAD_STATE
+ #define CYTHON_FAST_THREAD_STATE 0
+ #undef CYTHON_FAST_PYCALL
+ #define CYTHON_FAST_PYCALL 0
+ #undef CYTHON_PEP489_MULTI_PHASE_INIT
+ #define CYTHON_PEP489_MULTI_PHASE_INIT 0
+ #undef CYTHON_USE_TP_FINALIZE
+ #define CYTHON_USE_TP_FINALIZE 0
+#elif defined(PYSTON_VERSION)
+ #define CYTHON_COMPILING_IN_PYPY 0
+ #define CYTHON_COMPILING_IN_PYSTON 1
+ #define CYTHON_COMPILING_IN_CPYTHON 0
+ #ifndef CYTHON_USE_TYPE_SLOTS
+ #define CYTHON_USE_TYPE_SLOTS 1
+ #endif
+ #undef CYTHON_USE_PYTYPE_LOOKUP
+ #define CYTHON_USE_PYTYPE_LOOKUP 0
+ #undef CYTHON_USE_ASYNC_SLOTS
+ #define CYTHON_USE_ASYNC_SLOTS 0
+ #undef CYTHON_USE_PYLIST_INTERNALS
+ #define CYTHON_USE_PYLIST_INTERNALS 0
+ #ifndef CYTHON_USE_UNICODE_INTERNALS
+ #define CYTHON_USE_UNICODE_INTERNALS 1
+ #endif
+ #undef CYTHON_USE_UNICODE_WRITER
+ #define CYTHON_USE_UNICODE_WRITER 0
+ #undef CYTHON_USE_PYLONG_INTERNALS
+ #define CYTHON_USE_PYLONG_INTERNALS 0
+ #ifndef CYTHON_AVOID_BORROWED_REFS
+ #define CYTHON_AVOID_BORROWED_REFS 0
+ #endif
+ #ifndef CYTHON_ASSUME_SAFE_MACROS
+ #define CYTHON_ASSUME_SAFE_MACROS 1
+ #endif
+ #ifndef CYTHON_UNPACK_METHODS
+ #define CYTHON_UNPACK_METHODS 1
+ #endif
+ #undef CYTHON_FAST_THREAD_STATE
+ #define CYTHON_FAST_THREAD_STATE 0
+ #undef CYTHON_FAST_PYCALL
+ #define CYTHON_FAST_PYCALL 0
+ #undef CYTHON_PEP489_MULTI_PHASE_INIT
+ #define CYTHON_PEP489_MULTI_PHASE_INIT 0
+ #undef CYTHON_USE_TP_FINALIZE
+ #define CYTHON_USE_TP_FINALIZE 0
#else
-#define CYTHON_COMPILING_IN_PYPY 0
-#define CYTHON_COMPILING_IN_CPYTHON 1
+ #define CYTHON_COMPILING_IN_PYPY 0
+ #define CYTHON_COMPILING_IN_PYSTON 0
+ #define CYTHON_COMPILING_IN_CPYTHON 1
+ #ifndef CYTHON_USE_TYPE_SLOTS
+ #define CYTHON_USE_TYPE_SLOTS 1
+ #endif
+ #if PY_VERSION_HEX < 0x02070000
+ #undef CYTHON_USE_PYTYPE_LOOKUP
+ #define CYTHON_USE_PYTYPE_LOOKUP 0
+ #elif !defined(CYTHON_USE_PYTYPE_LOOKUP)
+ #define CYTHON_USE_PYTYPE_LOOKUP 1
+ #endif
+ #if PY_MAJOR_VERSION < 3
+ #undef CYTHON_USE_ASYNC_SLOTS
+ #define CYTHON_USE_ASYNC_SLOTS 0
+ #elif !defined(CYTHON_USE_ASYNC_SLOTS)
+ #define CYTHON_USE_ASYNC_SLOTS 1
+ #endif
+ #if PY_VERSION_HEX < 0x02070000
+ #undef CYTHON_USE_PYLONG_INTERNALS
+ #define CYTHON_USE_PYLONG_INTERNALS 0
+ #elif !defined(CYTHON_USE_PYLONG_INTERNALS)
+ #define CYTHON_USE_PYLONG_INTERNALS 1
+ #endif
+ #ifndef CYTHON_USE_PYLIST_INTERNALS
+ #define CYTHON_USE_PYLIST_INTERNALS 1
+ #endif
+ #ifndef CYTHON_USE_UNICODE_INTERNALS
+ #define CYTHON_USE_UNICODE_INTERNALS 1
+ #endif
+ #if PY_VERSION_HEX < 0x030300F0
+ #undef CYTHON_USE_UNICODE_WRITER
+ #define CYTHON_USE_UNICODE_WRITER 0
+ #elif !defined(CYTHON_USE_UNICODE_WRITER)
+ #define CYTHON_USE_UNICODE_WRITER 1
+ #endif
+ #ifndef CYTHON_AVOID_BORROWED_REFS
+ #define CYTHON_AVOID_BORROWED_REFS 0
+ #endif
+ #ifndef CYTHON_ASSUME_SAFE_MACROS
+ #define CYTHON_ASSUME_SAFE_MACROS 1
+ #endif
+ #ifndef CYTHON_UNPACK_METHODS
+ #define CYTHON_UNPACK_METHODS 1
+ #endif
+ #ifndef CYTHON_FAST_THREAD_STATE
+ #define CYTHON_FAST_THREAD_STATE 1
+ #endif
+ #ifndef CYTHON_FAST_PYCALL
+ #define CYTHON_FAST_PYCALL 1
+ #endif
+ #ifndef CYTHON_PEP489_MULTI_PHASE_INIT
+ #define CYTHON_PEP489_MULTI_PHASE_INIT (0 && PY_VERSION_HEX >= 0x03050000)
+ #endif
+ #ifndef CYTHON_USE_TP_FINALIZE
+ #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1)
+ #endif
#endif
-#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600
-#define Py_OptimizeFlag 0
+#if !defined(CYTHON_FAST_PYCCALL)
+#define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1)
+#endif
+#if CYTHON_USE_PYLONG_INTERNALS
+ #include "longintrepr.h"
+ #undef SHIFT
+ #undef BASE
+ #undef MASK
+#endif
+#ifndef __has_attribute
+ #define __has_attribute(x) 0
+#endif
+#ifndef __has_cpp_attribute
+ #define __has_cpp_attribute(x) 0
+#endif
+#ifndef CYTHON_RESTRICT
+ #if defined(__GNUC__)
+ #define CYTHON_RESTRICT __restrict__
+ #elif defined(_MSC_VER) && _MSC_VER >= 1400
+ #define CYTHON_RESTRICT __restrict
+ #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
+ #define CYTHON_RESTRICT restrict
+ #else
+ #define CYTHON_RESTRICT
+ #endif
+#endif
+#ifndef CYTHON_UNUSED
+# if defined(__GNUC__)
+# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
+# define CYTHON_UNUSED __attribute__ ((__unused__))
+# else
+# define CYTHON_UNUSED
+# endif
+# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
+# define CYTHON_UNUSED __attribute__ ((__unused__))
+# else
+# define CYTHON_UNUSED
+# endif
+#endif
+#ifndef CYTHON_MAYBE_UNUSED_VAR
+# if defined(__cplusplus)
+ template<class T> void CYTHON_MAYBE_UNUSED_VAR( const T& ) { }
+# else
+# define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x)
+# endif
+#endif
+#ifndef CYTHON_NCP_UNUSED
+# if CYTHON_COMPILING_IN_CPYTHON
+# define CYTHON_NCP_UNUSED
+# else
+# define CYTHON_NCP_UNUSED CYTHON_UNUSED
+# endif
+#endif
+#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None)
+#ifdef _MSC_VER
+ #ifndef _MSC_STDINT_H_
+ #if _MSC_VER < 1300
+ typedef unsigned char uint8_t;
+ typedef unsigned int uint32_t;
+ #else
+ typedef unsigned __int8 uint8_t;
+ typedef unsigned __int32 uint32_t;
+ #endif
+ #endif
+#else
+ #include <stdint.h>
+#endif
+#ifndef CYTHON_FALLTHROUGH
+ #if defined(__cplusplus) && __cplusplus >= 201103L
+ #if __has_cpp_attribute(fallthrough)
+ #define CYTHON_FALLTHROUGH [[fallthrough]]
+ #elif __has_cpp_attribute(clang::fallthrough)
+ #define CYTHON_FALLTHROUGH [[clang::fallthrough]]
+ #elif __has_cpp_attribute(gnu::fallthrough)
+ #define CYTHON_FALLTHROUGH [[gnu::fallthrough]]
+ #endif
+ #endif
+ #ifndef CYTHON_FALLTHROUGH
+ #if __has_attribute(fallthrough)
+ #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
+ #else
+ #define CYTHON_FALLTHROUGH
+ #endif
+ #endif
+ #if defined(__clang__ ) && defined(__apple_build_version__)
+ #if __apple_build_version__ < 7000000
+ #undef CYTHON_FALLTHROUGH
+ #define CYTHON_FALLTHROUGH
+ #endif
+ #endif
+#endif
+
+#ifndef CYTHON_INLINE
+ #if defined(__clang__)
+ #define CYTHON_INLINE __inline__ __attribute__ ((__unused__))
+ #elif defined(__GNUC__)
+ #define CYTHON_INLINE __inline__
+ #elif defined(_MSC_VER)
+ #define CYTHON_INLINE __inline
+ #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
+ #define CYTHON_INLINE inline
+ #else
+ #define CYTHON_INLINE
+ #endif
+#endif
+
+#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag)
+ #define Py_OptimizeFlag 0
#endif
#define __PYX_BUILD_PY_SSIZE_T "n"
#define CYTHON_FORMAT_SSIZE_T "z"
#if PY_MAJOR_VERSION < 3
#define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
- #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \
+ #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
#define __Pyx_DefaultClassType PyClass_Type
#else
#define __Pyx_BUILTIN_MODULE_NAME "builtins"
- #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \
+ #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
#define __Pyx_DefaultClassType PyType_Type
#endif
-#if PY_MAJOR_VERSION >= 3
+#ifndef Py_TPFLAGS_CHECKTYPES
#define Py_TPFLAGS_CHECKTYPES 0
+#endif
+#ifndef Py_TPFLAGS_HAVE_INDEX
#define Py_TPFLAGS_HAVE_INDEX 0
+#endif
+#ifndef Py_TPFLAGS_HAVE_NEWBUFFER
#define Py_TPFLAGS_HAVE_NEWBUFFER 0
#endif
-#if PY_VERSION_HEX < 0x030400a1 && !defined(Py_TPFLAGS_HAVE_FINALIZE)
+#ifndef Py_TPFLAGS_HAVE_FINALIZE
#define Py_TPFLAGS_HAVE_FINALIZE 0
#endif
+#if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL)
+ #ifndef METH_FASTCALL
+ #define METH_FASTCALL 0x80
+ #endif
+ typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs);
+ typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args,
+ Py_ssize_t nargs, PyObject *kwnames);
+#else
+ #define __Pyx_PyCFunctionFast _PyCFunctionFast
+ #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords
+#endif
+#if CYTHON_FAST_PYCCALL
+#define __Pyx_PyFastCFunction_Check(func)\
+ ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS)))))
+#else
+#define __Pyx_PyFastCFunction_Check(func) 0
+#endif
+#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc)
+ #define PyObject_Malloc(s) PyMem_Malloc(s)
+ #define PyObject_Free(p) PyMem_Free(p)
+ #define PyObject_Realloc(p) PyMem_Realloc(p)
+#endif
+#if CYTHON_COMPILING_IN_PYSTON
+ #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co)
+ #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno)
+#else
+ #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0)
+ #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno)
+#endif
+#if !CYTHON_FAST_THREAD_STATE || PY_VERSION_HEX < 0x02070000
+ #define __Pyx_PyThreadState_Current PyThreadState_GET()
+#elif PY_VERSION_HEX >= 0x03060000
+ #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet()
+#elif PY_VERSION_HEX >= 0x03000000
+ #define __Pyx_PyThreadState_Current PyThreadState_GET()
+#else
+ #define __Pyx_PyThreadState_Current _PyThreadState_Current
+#endif
+#if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT)
+#include "pythread.h"
+#define Py_tss_NEEDS_INIT 0
+typedef int Py_tss_t;
+static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) {
+ *key = PyThread_create_key();
+ return 0; // PyThread_create_key reports success always
+}
+static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) {
+ Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t));
+ *key = Py_tss_NEEDS_INIT;
+ return key;
+}
+static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) {
+ PyObject_Free(key);
+}
+static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) {
+ return *key != Py_tss_NEEDS_INIT;
+}
+static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) {
+ PyThread_delete_key(*key);
+ *key = Py_tss_NEEDS_INIT;
+}
+static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) {
+ return PyThread_set_key_value(*key, value);
+}
+static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
+ return PyThread_get_key_value(*key);
+}
+#endif // TSS (Thread Specific Storage) API
+#if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized)
+#define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n))
+#else
+#define __Pyx_PyDict_NewPresized(n) PyDict_New()
+#endif
+#if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION
+ #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y)
+ #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y)
+#else
+ #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
+ #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
+#endif
+#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && CYTHON_USE_UNICODE_INTERNALS
+#define __Pyx_PyDict_GetItemStr(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash)
+#else
+#define __Pyx_PyDict_GetItemStr(dict, name) PyDict_GetItem(dict, name)
+#endif
#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
#define CYTHON_PEP393_ENABLED 1
- #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ? \
+ #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\
0 : _PyUnicode_Ready((PyObject *)(op)))
#define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u)
#define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
+ #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u)
#define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u)
#define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u)
#define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i)
+ #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch)
+ #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u)))
#else
#define CYTHON_PEP393_ENABLED 0
+ #define PyUnicode_1BYTE_KIND 1
+ #define PyUnicode_2BYTE_KIND 2
+ #define PyUnicode_4BYTE_KIND 4
#define __Pyx_PyUnicode_READY(op) (0)
#define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u)
#define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
+ #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111)
#define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE))
#define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u))
#define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
+ #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch)
+ #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u))
#endif
#if CYTHON_COMPILING_IN_PYPY
#define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b)
#define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b)
- #define __Pyx_PyFrozenSet_Size(s) PyObject_Size(s)
#else
#define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b)
- #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ? \
+ #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\
PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b))
- #define __Pyx_PyFrozenSet_Size(s) PySet_Size(s)
+#endif
+#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains)
+ #define PyUnicode_Contains(u, s) PySequence_Contains(u, s)
+#endif
+#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check)
+ #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type)
+#endif
+#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format)
+ #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt)
#endif
#define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b))
#define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b))
@@ -113,12 +478,16 @@
#else
#define __Pyx_PyString_Format(a, b) PyString_Format(a, b)
#endif
+#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII)
+ #define PyObject_ASCII(o) PyObject_Repr(o)
+#endif
#if PY_MAJOR_VERSION >= 3
#define PyBaseString_Type PyUnicode_Type
#define PyStringObject PyUnicodeObject
#define PyString_Type PyUnicode_Type
#define PyString_Check PyUnicode_Check
#define PyString_CheckExact PyUnicode_CheckExact
+ #define PyObject_Unicode PyObject_Str
#endif
#if PY_MAJOR_VERSION >= 3
#define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
@@ -130,7 +499,11 @@
#ifndef PySet_CheckExact
#define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type)
#endif
-#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
+#if CYTHON_ASSUME_SAFE_MACROS
+ #define __Pyx_PySequence_SIZE(seq) Py_SIZE(seq)
+#else
+ #define __Pyx_PySequence_SIZE(seq) PySequence_Size(seq)
+#endif
#if PY_MAJOR_VERSION >= 3
#define PyIntObject PyLongObject
#define PyInt_Type PyLong_Type
@@ -165,59 +538,52 @@
#define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t
#endif
#if PY_MAJOR_VERSION >= 3
- #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func))
+ #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : (Py_INCREF(func), func))
#else
#define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass)
#endif
-#ifndef CYTHON_INLINE
- #if defined(__GNUC__)
- #define CYTHON_INLINE __inline__
- #elif defined(_MSC_VER)
- #define CYTHON_INLINE __inline
- #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
- #define CYTHON_INLINE inline
+#if CYTHON_USE_ASYNC_SLOTS
+ #if PY_VERSION_HEX >= 0x030500B1
+ #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods
+ #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async)
#else
- #define CYTHON_INLINE
+ #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved))
#endif
+#else
+ #define __Pyx_PyType_AsAsync(obj) NULL
#endif
-#ifndef CYTHON_RESTRICT
- #if defined(__GNUC__)
- #define CYTHON_RESTRICT __restrict__
- #elif defined(_MSC_VER) && _MSC_VER >= 1400
- #define CYTHON_RESTRICT __restrict
- #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
- #define CYTHON_RESTRICT restrict
- #else
- #define CYTHON_RESTRICT
- #endif
+#ifndef __Pyx_PyAsyncMethodsStruct
+ typedef struct {
+ unaryfunc am_await;
+ unaryfunc am_aiter;
+ unaryfunc am_anext;
+ } __Pyx_PyAsyncMethodsStruct;
#endif
+
+#if defined(WIN32) || defined(MS_WINDOWS)
+ #define _USE_MATH_DEFINES
+#endif
+#include <math.h>
#ifdef NAN
#define __PYX_NAN() ((float) NAN)
#else
static CYTHON_INLINE float __PYX_NAN() {
- /* Initialize NaN. The sign is irrelevant, an exponent with all bits 1 and
- a nonzero mantissa means NaN. If the first bit in the mantissa is 1, it is
- a quiet NaN. */
float value;
memset(&value, 0xFF, sizeof(value));
return value;
}
#endif
-#ifdef __cplusplus
-template<typename T>
-void __Pyx_call_destructor(T* x) {
- x->~T();
-}
+#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL)
+#define __Pyx_truncl trunc
+#else
+#define __Pyx_truncl truncl
#endif
-#if PY_MAJOR_VERSION >= 3
- #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y)
- #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y)
-#else
- #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
- #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
-#endif
+#define __PYX_ERR(f_index, lineno, Ln_error) \
+{ \
+ __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \
+}
#ifndef __PYX_EXTERN_C
#ifdef __cplusplus
@@ -227,40 +593,24 @@ void __Pyx_call_destructor(T* x) {
#endif
#endif
-#if defined(WIN32) || defined(MS_WINDOWS)
-#define _USE_MATH_DEFINES
-#endif
-#include <math.h>
#define __PYX_HAVE__silx__io__specfile
#define __PYX_HAVE_API__silx__io__specfile
-#include "string.h"
-#include "stdio.h"
-#include "stdlib.h"
-#include "numpy/arrayobject.h"
-#include "numpy/ufuncobject.h"
+/* Early includes */
+#include <string.h>
+#include <stdlib.h>
#include "SpecFileCython.h"
+#include "pythread.h"
+#include <stdio.h>
+#include "pystate.h"
#ifdef _OPENMP
#include <omp.h>
#endif /* _OPENMP */
-#ifdef PYREX_WITHOUT_ASSERTIONS
+#if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS)
#define CYTHON_WITHOUT_ASSERTIONS
#endif
-#ifndef CYTHON_UNUSED
-# if defined(__GNUC__)
-# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
-# define CYTHON_UNUSED __attribute__ ((__unused__))
-# else
-# define CYTHON_UNUSED
-# endif
-# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
-# define CYTHON_UNUSED __attribute__ ((__unused__))
-# else
-# define CYTHON_UNUSED
-# endif
-#endif
-typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding;
+typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding;
const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;
#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
@@ -268,18 +618,36 @@ typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding;
#define __PYX_DEFAULT_STRING_ENCODING ""
#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString
#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
-#define __Pyx_fits_Py_ssize_t(v, type, is_signed) ( \
- (sizeof(type) < sizeof(Py_ssize_t)) || \
- (sizeof(type) > sizeof(Py_ssize_t) && \
- likely(v < (type)PY_SSIZE_T_MAX || \
- v == (type)PY_SSIZE_T_MAX) && \
- (!is_signed || likely(v > (type)PY_SSIZE_T_MIN || \
- v == (type)PY_SSIZE_T_MIN))) || \
- (sizeof(type) == sizeof(Py_ssize_t) && \
- (is_signed || likely(v < (type)PY_SSIZE_T_MAX || \
+#define __Pyx_uchar_cast(c) ((unsigned char)c)
+#define __Pyx_long_cast(x) ((long)x)
+#define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\
+ (sizeof(type) < sizeof(Py_ssize_t)) ||\
+ (sizeof(type) > sizeof(Py_ssize_t) &&\
+ likely(v < (type)PY_SSIZE_T_MAX ||\
+ v == (type)PY_SSIZE_T_MAX) &&\
+ (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
+ v == (type)PY_SSIZE_T_MIN))) ||\
+ (sizeof(type) == sizeof(Py_ssize_t) &&\
+ (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
v == (type)PY_SSIZE_T_MAX))) )
-static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*);
-static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
+#if defined (__cplusplus) && __cplusplus >= 201103L
+ #include <cstdlib>
+ #define __Pyx_sst_abs(value) std::abs(value)
+#elif SIZEOF_INT >= SIZEOF_SIZE_T
+ #define __Pyx_sst_abs(value) abs(value)
+#elif SIZEOF_LONG >= SIZEOF_SIZE_T
+ #define __Pyx_sst_abs(value) labs(value)
+#elif defined (_MSC_VER)
+ #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value))
+#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
+ #define __Pyx_sst_abs(value) llabs(value)
+#elif defined (__GNUC__)
+ #define __Pyx_sst_abs(value) __builtin_llabs(value)
+#else
+ #define __Pyx_sst_abs(value) ((value<0) ? -value : value)
+#endif
+static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*);
+static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s))
#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
#define __Pyx_PyBytes_FromString PyBytes_FromString
@@ -292,38 +660,51 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
#define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString
#define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
#endif
-#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s))
-#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s))
-#define __Pyx_PyObject_FromUString(s) __Pyx_PyObject_FromString((const char*)s)
-#define __Pyx_PyBytes_FromUString(s) __Pyx_PyBytes_FromString((const char*)s)
-#define __Pyx_PyByteArray_FromUString(s) __Pyx_PyByteArray_FromString((const char*)s)
-#define __Pyx_PyStr_FromUString(s) __Pyx_PyStr_FromString((const char*)s)
-#define __Pyx_PyUnicode_FromUString(s) __Pyx_PyUnicode_FromString((const char*)s)
-#if PY_MAJOR_VERSION < 3
-static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
-{
+#define __Pyx_PyBytes_AsWritableString(s) ((char*) PyBytes_AS_STRING(s))
+#define __Pyx_PyBytes_AsWritableSString(s) ((signed char*) PyBytes_AS_STRING(s))
+#define __Pyx_PyBytes_AsWritableUString(s) ((unsigned char*) PyBytes_AS_STRING(s))
+#define __Pyx_PyBytes_AsString(s) ((const char*) PyBytes_AS_STRING(s))
+#define __Pyx_PyBytes_AsSString(s) ((const signed char*) PyBytes_AS_STRING(s))
+#define __Pyx_PyBytes_AsUString(s) ((const unsigned char*) PyBytes_AS_STRING(s))
+#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s))
+#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s))
+#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s))
+#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s))
+#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s))
+#define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s)
+#define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s)
+#define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s)
+#define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s)
+#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
+static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) {
const Py_UNICODE *u_end = u;
while (*u_end++) ;
return (size_t)(u_end - u - 1);
}
-#else
-#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen
-#endif
#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
#define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode
-#define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None)
-#define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False))
+#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
+#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
+static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b);
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
-static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x);
+static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x);
+#define __Pyx_PySequence_Tuple(obj)\
+ (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj))
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
-#if CYTHON_COMPILING_IN_CPYTHON
+#if CYTHON_ASSUME_SAFE_MACROS
#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
#else
#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
#endif
#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
+#if PY_MAJOR_VERSION >= 3
+#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x))
+#else
+#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x))
+#endif
+#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x))
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
static int __Pyx_sys_getdefaultencoding_not_ascii;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
@@ -334,7 +715,7 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) {
const char* default_encoding_c;
sys = PyImport_ImportModule("sys");
if (!sys) goto bad;
- default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
+ default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
Py_DECREF(sys);
if (!default_encoding) goto bad;
default_encoding_c = PyBytes_AsString(default_encoding);
@@ -408,294 +789,142 @@ bad:
#define likely(x) (x)
#define unlikely(x) (x)
#endif /* __GNUC__ */
+static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; }
-static PyObject *__pyx_m;
+static PyObject *__pyx_m = NULL;
static PyObject *__pyx_d;
static PyObject *__pyx_b;
+static PyObject *__pyx_cython_runtime = NULL;
static PyObject *__pyx_empty_tuple;
static PyObject *__pyx_empty_bytes;
+static PyObject *__pyx_empty_unicode;
static int __pyx_lineno;
static int __pyx_clineno = 0;
static const char * __pyx_cfilenm= __FILE__;
static const char *__pyx_filename;
-#if !defined(CYTHON_CCOMPLEX)
- #if defined(__cplusplus)
- #define CYTHON_CCOMPLEX 1
- #elif defined(_Complex_I)
- #define CYTHON_CCOMPLEX 1
- #else
- #define CYTHON_CCOMPLEX 0
- #endif
-#endif
-#if CYTHON_CCOMPLEX
- #ifdef __cplusplus
- #include <complex>
- #else
- #include <complex.h>
- #endif
-#endif
-#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__)
- #undef _Complex_I
- #define _Complex_I 1.0fj
-#endif
-
static const char *__pyx_f[] = {
"silx/io/specfile.pyx",
- "__init__.pxd",
- "type.pxd",
+ "stringsource",
};
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":723
- * # in Cython to enable them only on the right systems.
- *
- * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<<
- * ctypedef npy_int16 int16_t
- * ctypedef npy_int32 int32_t
- */
-typedef npy_int8 __pyx_t_5numpy_int8_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":724
- *
- * ctypedef npy_int8 int8_t
- * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<<
- * ctypedef npy_int32 int32_t
- * ctypedef npy_int64 int64_t
- */
-typedef npy_int16 __pyx_t_5numpy_int16_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":725
- * ctypedef npy_int8 int8_t
- * ctypedef npy_int16 int16_t
- * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<<
- * ctypedef npy_int64 int64_t
- * #ctypedef npy_int96 int96_t
- */
-typedef npy_int32 __pyx_t_5numpy_int32_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":726
- * ctypedef npy_int16 int16_t
- * ctypedef npy_int32 int32_t
- * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<<
- * #ctypedef npy_int96 int96_t
- * #ctypedef npy_int128 int128_t
- */
-typedef npy_int64 __pyx_t_5numpy_int64_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":730
- * #ctypedef npy_int128 int128_t
- *
- * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<<
- * ctypedef npy_uint16 uint16_t
- * ctypedef npy_uint32 uint32_t
- */
-typedef npy_uint8 __pyx_t_5numpy_uint8_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":731
- *
- * ctypedef npy_uint8 uint8_t
- * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<<
- * ctypedef npy_uint32 uint32_t
- * ctypedef npy_uint64 uint64_t
- */
-typedef npy_uint16 __pyx_t_5numpy_uint16_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":732
- * ctypedef npy_uint8 uint8_t
- * ctypedef npy_uint16 uint16_t
- * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<<
- * ctypedef npy_uint64 uint64_t
- * #ctypedef npy_uint96 uint96_t
- */
-typedef npy_uint32 __pyx_t_5numpy_uint32_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":733
- * ctypedef npy_uint16 uint16_t
- * ctypedef npy_uint32 uint32_t
- * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<<
- * #ctypedef npy_uint96 uint96_t
- * #ctypedef npy_uint128 uint128_t
- */
-typedef npy_uint64 __pyx_t_5numpy_uint64_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":737
- * #ctypedef npy_uint128 uint128_t
- *
- * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<<
- * ctypedef npy_float64 float64_t
- * #ctypedef npy_float80 float80_t
- */
-typedef npy_float32 __pyx_t_5numpy_float32_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":738
- *
- * ctypedef npy_float32 float32_t
- * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<<
- * #ctypedef npy_float80 float80_t
- * #ctypedef npy_float128 float128_t
- */
-typedef npy_float64 __pyx_t_5numpy_float64_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":747
- * # The int types are mapped a bit surprising --
- * # numpy.int corresponds to 'l' and numpy.long to 'q'
- * ctypedef npy_long int_t # <<<<<<<<<<<<<<
- * ctypedef npy_longlong long_t
- * ctypedef npy_longlong longlong_t
- */
-typedef npy_long __pyx_t_5numpy_int_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":748
- * # numpy.int corresponds to 'l' and numpy.long to 'q'
- * ctypedef npy_long int_t
- * ctypedef npy_longlong long_t # <<<<<<<<<<<<<<
- * ctypedef npy_longlong longlong_t
- *
- */
-typedef npy_longlong __pyx_t_5numpy_long_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":749
- * ctypedef npy_long int_t
- * ctypedef npy_longlong long_t
- * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<<
- *
- * ctypedef npy_ulong uint_t
- */
-typedef npy_longlong __pyx_t_5numpy_longlong_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":751
- * ctypedef npy_longlong longlong_t
- *
- * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<<
- * ctypedef npy_ulonglong ulong_t
- * ctypedef npy_ulonglong ulonglong_t
- */
-typedef npy_ulong __pyx_t_5numpy_uint_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":752
- *
- * ctypedef npy_ulong uint_t
- * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<<
- * ctypedef npy_ulonglong ulonglong_t
- *
- */
-typedef npy_ulonglong __pyx_t_5numpy_ulong_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":753
- * ctypedef npy_ulong uint_t
- * ctypedef npy_ulonglong ulong_t
- * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<<
- *
- * ctypedef npy_intp intp_t
- */
-typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":755
- * ctypedef npy_ulonglong ulonglong_t
- *
- * ctypedef npy_intp intp_t # <<<<<<<<<<<<<<
- * ctypedef npy_uintp uintp_t
- *
- */
-typedef npy_intp __pyx_t_5numpy_intp_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":756
- *
- * ctypedef npy_intp intp_t
- * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<<
- *
- * ctypedef npy_double float_t
- */
-typedef npy_uintp __pyx_t_5numpy_uintp_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":758
- * ctypedef npy_uintp uintp_t
- *
- * ctypedef npy_double float_t # <<<<<<<<<<<<<<
- * ctypedef npy_double double_t
- * ctypedef npy_longdouble longdouble_t
- */
-typedef npy_double __pyx_t_5numpy_float_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":759
- *
- * ctypedef npy_double float_t
- * ctypedef npy_double double_t # <<<<<<<<<<<<<<
- * ctypedef npy_longdouble longdouble_t
- *
- */
-typedef npy_double __pyx_t_5numpy_double_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":760
- * ctypedef npy_double float_t
- * ctypedef npy_double double_t
- * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
- *
- * ctypedef npy_cfloat cfloat_t
- */
-typedef npy_longdouble __pyx_t_5numpy_longdouble_t;
-#if CYTHON_CCOMPLEX
- #ifdef __cplusplus
- typedef ::std::complex< float > __pyx_t_float_complex;
- #else
- typedef float _Complex __pyx_t_float_complex;
- #endif
+/* MemviewSliceStruct.proto */
+struct __pyx_memoryview_obj;
+typedef struct {
+ struct __pyx_memoryview_obj *memview;
+ char *data;
+ Py_ssize_t shape[8];
+ Py_ssize_t strides[8];
+ Py_ssize_t suboffsets[8];
+} __Pyx_memviewslice;
+#define __Pyx_MemoryView_Len(m) (m.shape[0])
+
+/* Atomics.proto */
+#include <pythread.h>
+#ifndef CYTHON_ATOMICS
+ #define CYTHON_ATOMICS 1
+#endif
+#define __pyx_atomic_int_type int
+#if CYTHON_ATOMICS && __GNUC__ >= 4 && (__GNUC_MINOR__ > 1 ||\
+ (__GNUC_MINOR__ == 1 && __GNUC_PATCHLEVEL >= 2)) &&\
+ !defined(__i386__)
+ #define __pyx_atomic_incr_aligned(value, lock) __sync_fetch_and_add(value, 1)
+ #define __pyx_atomic_decr_aligned(value, lock) __sync_fetch_and_sub(value, 1)
+ #ifdef __PYX_DEBUG_ATOMICS
+ #warning "Using GNU atomics"
+ #endif
+#elif CYTHON_ATOMICS && defined(_MSC_VER) && 0
+ #include <Windows.h>
+ #undef __pyx_atomic_int_type
+ #define __pyx_atomic_int_type LONG
+ #define __pyx_atomic_incr_aligned(value, lock) InterlockedIncrement(value)
+ #define __pyx_atomic_decr_aligned(value, lock) InterlockedDecrement(value)
+ #ifdef __PYX_DEBUG_ATOMICS
+ #pragma message ("Using MSVC atomics")
+ #endif
+#elif CYTHON_ATOMICS && (defined(__ICC) || defined(__INTEL_COMPILER)) && 0
+ #define __pyx_atomic_incr_aligned(value, lock) _InterlockedIncrement(value)
+ #define __pyx_atomic_decr_aligned(value, lock) _InterlockedDecrement(value)
+ #ifdef __PYX_DEBUG_ATOMICS
+ #warning "Using Intel atomics"
+ #endif
#else
- typedef struct { float real, imag; } __pyx_t_float_complex;
+ #undef CYTHON_ATOMICS
+ #define CYTHON_ATOMICS 0
+ #ifdef __PYX_DEBUG_ATOMICS
+ #warning "Not using atomics"
+ #endif
#endif
-
-#if CYTHON_CCOMPLEX
- #ifdef __cplusplus
- typedef ::std::complex< double > __pyx_t_double_complex;
- #else
- typedef double _Complex __pyx_t_double_complex;
- #endif
+typedef volatile __pyx_atomic_int_type __pyx_atomic_int;
+#if CYTHON_ATOMICS
+ #define __pyx_add_acquisition_count(memview)\
+ __pyx_atomic_incr_aligned(__pyx_get_slice_count_pointer(memview), memview->lock)
+ #define __pyx_sub_acquisition_count(memview)\
+ __pyx_atomic_decr_aligned(__pyx_get_slice_count_pointer(memview), memview->lock)
#else
- typedef struct { double real, imag; } __pyx_t_double_complex;
+ #define __pyx_add_acquisition_count(memview)\
+ __pyx_add_acquisition_count_locked(__pyx_get_slice_count_pointer(memview), memview->lock)
+ #define __pyx_sub_acquisition_count(memview)\
+ __pyx_sub_acquisition_count_locked(__pyx_get_slice_count_pointer(memview), memview->lock)
+#endif
+
+/* ForceInitThreads.proto */
+#ifndef __PYX_FORCE_INIT_THREADS
+ #define __PYX_FORCE_INIT_THREADS 0
#endif
+/* NoFastGil.proto */
+#define __Pyx_PyGILState_Ensure PyGILState_Ensure
+#define __Pyx_PyGILState_Release PyGILState_Release
+#define __Pyx_FastGIL_Remember()
+#define __Pyx_FastGIL_Forget()
+#define __Pyx_FastGilFuncInit()
+
+/* BufferFormatStructs.proto */
+#define IS_UNSIGNED(type) (((type) -1) > 0)
+struct __Pyx_StructField_;
+#define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0)
+typedef struct {
+ const char* name;
+ struct __Pyx_StructField_* fields;
+ size_t size;
+ size_t arraysize[8];
+ int ndim;
+ char typegroup;
+ char is_unsigned;
+ int flags;
+} __Pyx_TypeInfo;
+typedef struct __Pyx_StructField_ {
+ __Pyx_TypeInfo* type;
+ const char* name;
+ size_t offset;
+} __Pyx_StructField;
+typedef struct {
+ __Pyx_StructField* field;
+ size_t parent_offset;
+} __Pyx_BufFmt_StackElem;
+typedef struct {
+ __Pyx_StructField root;
+ __Pyx_BufFmt_StackElem* head;
+ size_t fmt_offset;
+ size_t new_count, enc_count;
+ size_t struct_alignment;
+ int is_complex;
+ char enc_type;
+ char new_packmode;
+ char enc_packmode;
+ char is_valid_array;
+} __Pyx_BufFmt_Context;
+
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struct __pyx_obj_4silx_2io_8specfile_SpecFile;
struct __pyx_obj_4silx_2io_8specfile___pyx_scope_struct____iter__;
struct __pyx_obj_4silx_2io_8specfile___pyx_scope_struct_1___iter__;
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- * ctypedef npy_longdouble longdouble_t
- *
- * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<<
- * ctypedef npy_cdouble cdouble_t
- * ctypedef npy_clongdouble clongdouble_t
- */
-typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":763
- *
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- * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<<
- * ctypedef npy_clongdouble clongdouble_t
- *
- */
-typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":764
- * ctypedef npy_cfloat cfloat_t
- * ctypedef npy_cdouble cdouble_t
- * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<<
- *
- * ctypedef npy_cdouble complex_t
- */
-typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;
-
-/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":766
- * ctypedef npy_clongdouble clongdouble_t
- *
- * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<<
- *
- * cdef inline object PyArray_MultiIterNew1(a):
- */
-typedef npy_cdouble __pyx_t_5numpy_complex_t;
+struct __pyx_array_obj;
+struct __pyx_MemviewEnum_obj;
+struct __pyx_memoryview_obj;
+struct __pyx_memoryviewslice_obj;
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typedef struct _SpecFile __pyx_t_4silx_2io_16specfile_wrapper_SpecFileHandle;
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*
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PyObject *__pyx_v_self;
Py_ssize_t __pyx_t_0;
Py_ssize_t __pyx_t_1;
+ Py_ssize_t __pyx_t_2;
};
-/* "silx/io/specfile.pyx":698
+/* "silx/io/specfile.pyx":684
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*
* def __iter__(self): # <<<<<<<<<<<<<<
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struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self;
Py_ssize_t __pyx_t_0;
Py_ssize_t __pyx_t_1;
+ Py_ssize_t __pyx_t_2;
+};
+
+
+/* "View.MemoryView":104
+ *
+ * @cname("__pyx_array")
+ * cdef class array: # <<<<<<<<<<<<<<
+ *
+ * cdef:
+ */
+struct __pyx_array_obj {
+ PyObject_HEAD
+ struct __pyx_vtabstruct_array *__pyx_vtab;
+ char *data;
+ Py_ssize_t len;
+ char *format;
+ int ndim;
+ Py_ssize_t *_shape;
+ Py_ssize_t *_strides;
+ Py_ssize_t itemsize;
+ PyObject *mode;
+ PyObject *_format;
+ void (*callback_free_data)(void *);
+ int free_data;
+ int dtype_is_object;
+};
+
+
+/* "View.MemoryView":278
+ *
+ * @cname('__pyx_MemviewEnum')
+ * cdef class Enum(object): # <<<<<<<<<<<<<<
+ * cdef object name
+ * def __init__(self, name):
+ */
+struct __pyx_MemviewEnum_obj {
+ PyObject_HEAD
+ PyObject *name;
+};
+
+
+/* "View.MemoryView":329
+ *
+ * @cname('__pyx_memoryview')
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+struct __pyx_memoryview_obj {
+ PyObject_HEAD
+ struct __pyx_vtabstruct_memoryview *__pyx_vtab;
+ PyObject *obj;
+ PyObject *_size;
+ PyObject *_array_interface;
+ PyThread_type_lock lock;
+ __pyx_atomic_int acquisition_count[2];
+ __pyx_atomic_int *acquisition_count_aligned_p;
+ Py_buffer view;
+ int flags;
+ int dtype_is_object;
+ __Pyx_TypeInfo *typeinfo;
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+
+/* "View.MemoryView":960
+ *
+ * @cname('__pyx_memoryviewslice')
+ * cdef class _memoryviewslice(memoryview): # <<<<<<<<<<<<<<
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+ *
+ */
+struct __pyx_memoryviewslice_obj {
+ struct __pyx_memoryview_obj __pyx_base;
+ __Pyx_memviewslice from_slice;
+ PyObject *from_object;
+ PyObject *(*to_object_func)(char *);
+ int (*to_dtype_func)(char *, PyObject *);
+};
+
+
+
+/* "View.MemoryView":104
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+ * @cname("__pyx_array")
+ * cdef class array: # <<<<<<<<<<<<<<
+ *
+ * cdef:
+ */
+
+struct __pyx_vtabstruct_array {
+ PyObject *(*get_memview)(struct __pyx_array_obj *);
+};
+static struct __pyx_vtabstruct_array *__pyx_vtabptr_array;
+
+
+/* "View.MemoryView":329
+ *
+ * @cname('__pyx_memoryview')
+ * cdef class memoryview(object): # <<<<<<<<<<<<<<
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+ * cdef object obj
+ */
+
+struct __pyx_vtabstruct_memoryview {
+ char *(*get_item_pointer)(struct __pyx_memoryview_obj *, PyObject *);
+ PyObject *(*is_slice)(struct __pyx_memoryview_obj *, PyObject *);
+ PyObject *(*setitem_slice_assignment)(struct __pyx_memoryview_obj *, PyObject *, PyObject *);
+ PyObject *(*setitem_slice_assign_scalar)(struct __pyx_memoryview_obj *, struct __pyx_memoryview_obj *, PyObject *);
+ PyObject *(*setitem_indexed)(struct __pyx_memoryview_obj *, PyObject *, PyObject *);
+ PyObject *(*convert_item_to_object)(struct __pyx_memoryview_obj *, char *);
+ PyObject *(*assign_item_from_object)(struct __pyx_memoryview_obj *, char *, PyObject *);
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+
+/* "View.MemoryView":960
+ *
+ * @cname('__pyx_memoryviewslice')
+ * cdef class _memoryviewslice(memoryview): # <<<<<<<<<<<<<<
+ * "Internal class for passing memoryview slices to Python"
+ *
+ */
+
+struct __pyx_vtabstruct__memoryviewslice {
+ struct __pyx_vtabstruct_memoryview __pyx_base;
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+static struct __pyx_vtabstruct__memoryviewslice *__pyx_vtabptr__memoryviewslice;
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-#define __Pyx_XDECREF_SET(r, v) do { \
- PyObject *tmp = (PyObject *) r; \
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+#define __Pyx_XDECREF_SET(r, v) do {\
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-#define __Pyx_DECREF_SET(r, v) do { \
- PyObject *tmp = (PyObject *) r; \
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+#define __Pyx_DECREF_SET(r, v) do {\
+ PyObject *tmp = (PyObject *) r;\
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#define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0)
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- if (likely(tp->tp_getattr))
- return tp->tp_getattr(obj, PyString_AS_STRING(attr_name));
-#endif
- return PyObject_GetAttr(obj, attr_name);
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+static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name);
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#define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n)
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+/* GetBuiltinName.proto */
static PyObject *__Pyx_GetBuiltinName(PyObject *name);
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static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
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static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name);
-static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[], \
- PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, \
+/* ParseKeywords.proto */
+static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\
+ PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\
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-#if CYTHON_COMPILING_IN_CPYTHON
-#define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o,n,NULL)
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- if (likely(tp->tp_setattr))
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-#endif
- return PyObject_SetAttr(obj, attr_name, value);
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+/* PyObjectSetAttrStr.proto */
+#if CYTHON_USE_TYPE_SLOTS
+#define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o, n, NULL)
+static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value);
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#define __Pyx_PyObject_DelAttrStr(o,n) PyObject_DelAttr(o,n)
#define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v)
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+/* PyCFunctionFastCall.proto */
+#if CYTHON_FAST_PYCCALL
+static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs);
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+#define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL)
+#endif
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+/* PyFunctionFastCall.proto */
+#if CYTHON_FAST_PYCALL
+#define __Pyx_PyFunction_FastCall(func, args, nargs)\
+ __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL)
+#if 1 || PY_VERSION_HEX < 0x030600B1
+static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs);
+#else
+#define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs)
+#endif
+#endif
+
+/* PyObjectCall.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw);
#else
#define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw)
#endif
+/* PyObjectCallMethO.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg);
#endif
+/* PyObjectCallOneArg.proto */
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg);
+/* PyObjectCallNoArg.proto */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func);
#else
#define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL)
#endif
-static CYTHON_INLINE int __Pyx_PySequence_Contains(PyObject* item, PyObject* seq, int eq) {
+/* PySequenceContains.proto */
+static CYTHON_INLINE int __Pyx_PySequence_ContainsTF(PyObject* item, PyObject* seq, int eq) {
int result = PySequence_Contains(seq, item);
return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
}
-#if CYTHON_COMPILING_IN_CPYTHON
+/* DictGetItem.proto */
+#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
+static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key);
+#define __Pyx_PyObject_Dict_GetItem(obj, name)\
+ (likely(PyDict_CheckExact(obj)) ?\
+ __Pyx_PyDict_GetItem(obj, name) : PyObject_GetItem(obj, name))
+#else
+#define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key)
+#define __Pyx_PyObject_Dict_GetItem(obj, name) PyObject_GetItem(obj, name)
+#endif
+
+/* ListCompAppend.proto */
+#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) {
PyListObject* L = (PyListObject*) list;
Py_ssize_t len = Py_SIZE(list);
@@ -895,15 +1277,20 @@ static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) {
#define __Pyx_ListComp_Append(L,x) PyList_Append(L,x)
#endif
+/* RaiseTooManyValuesToUnpack.proto */
static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
+/* RaiseNeedMoreValuesToUnpack.proto */
static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
+/* IterFinish.proto */
static CYTHON_INLINE int __Pyx_IterFinish(void);
+/* UnpackItemEndCheck.proto */
static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected);
-#if CYTHON_COMPILING_IN_CPYTHON
+/* ListAppend.proto */
+#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) {
PyListObject* L = (PyListObject*) list;
Py_ssize_t len = Py_SIZE(list);
@@ -919,44 +1306,142 @@ static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) {
#define __Pyx_PyList_Append(L,x) PyList_Append(L,x)
#endif
+/* PyObjectCallMethod1.proto */
static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg);
+static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg);
+/* append.proto */
static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x);
-#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \
- (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \
- __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) : \
- (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) : \
+/* PyIntBinop.proto */
+#if !CYTHON_COMPILING_IN_PYPY
+static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace);
+#else
+#define __Pyx_PyInt_AddObjC(op1, op2, intval, inplace)\
+ (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2))
+#endif
+
+/* GetItemInt.proto */
+#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
+ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
+ __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\
+ (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\
__Pyx_GetItemInt_Generic(o, to_py_func(i))))
-#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \
- (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \
- __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \
+#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
+ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
+ __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
(PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL))
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
int wraparound, int boundscheck);
-#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \
- (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \
- __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \
+#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
+ (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
+ __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
(PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL))
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
int wraparound, int boundscheck);
-static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j);
+static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j);
static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i,
int is_list, int wraparound, int boundscheck);
-static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb);
-static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb);
+/* PyIntBinop.proto */
+#if !CYTHON_COMPILING_IN_PYPY
+static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace);
+#else
+#define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace)\
+ (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2))
+#endif
+/* PyThreadStateGet.proto */
+#if CYTHON_FAST_THREAD_STATE
+#define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
+#define __Pyx_PyThreadState_assign __pyx_tstate = __Pyx_PyThreadState_Current;
+#define __Pyx_PyErr_Occurred() __pyx_tstate->curexc_type
+#else
+#define __Pyx_PyThreadState_declare
+#define __Pyx_PyThreadState_assign
+#define __Pyx_PyErr_Occurred() PyErr_Occurred()
+#endif
+
+/* PyErrFetchRestore.proto */
+#if CYTHON_FAST_THREAD_STATE
+#define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL)
+#define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb)
+#define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb)
+#define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb)
+#define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb)
+static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
+static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
+#if CYTHON_COMPILING_IN_CPYTHON
+#define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL))
+#else
+#define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc)
+#endif
+#else
+#define __Pyx_PyErr_Clear() PyErr_Clear()
+#define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc)
+#define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb)
+#define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb)
+#define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb)
+#define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb)
+#define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb)
+#define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb)
+#endif
+
+/* RaiseException.proto */
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause);
-static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb);
-static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb);
+/* ObjectGetItem.proto */
+#if CYTHON_USE_TYPE_SLOTS
+static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key);
+#else
+#define __Pyx_PyObject_GetItem(obj, key) PyObject_GetItem(obj, key)
+#endif
+
+/* SaveResetException.proto */
+#if CYTHON_FAST_THREAD_STATE
+#define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb)
+static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
+#define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb)
+static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
+#else
+#define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb)
+#define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb)
+#endif
+
+/* PyErrExceptionMatches.proto */
+#if CYTHON_FAST_THREAD_STATE
+#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err)
+static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err);
+#else
+#define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err)
+#endif
+/* GetException.proto */
+#if CYTHON_FAST_THREAD_STATE
+#define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb)
+static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
+#else
static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb);
+#endif
+/* GetModuleGlobalName.proto */
static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name);
-#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x02070000
+/* FastTypeChecks.proto */
+#if CYTHON_COMPILING_IN_CPYTHON
+#define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type)
+static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b);
+static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type);
+static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2);
+#else
+#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
+#define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type)
+#define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2))
+#endif
+#define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception)
+
+/* PyObjectLookupSpecial.proto */
+#if CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS
static CYTHON_INLINE PyObject* __Pyx_PyObject_LookupSpecial(PyObject* obj, PyObject* attr_name) {
PyObject *res;
PyTypeObject *tp = Py_TYPE(obj);
@@ -981,12 +1466,15 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_LookupSpecial(PyObject* obj, PyObj
#define __Pyx_PyObject_LookupSpecial(o,n) __Pyx_PyObject_GetAttrStr(o,n)
#endif
+/* None.proto */
static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname);
+/* WriteUnraisableException.proto */
static void __Pyx_WriteUnraisable(const char *name, int clineno,
int lineno, const char *filename,
- int full_traceback);
+ int full_traceback, int nogil);
+/* StringJoin.proto */
#if PY_MAJOR_VERSION < 3
#define __Pyx_PyString_Join __Pyx_PyBytes_Join
#define __Pyx_PyBaseString_Join(s, v) (PyUnicode_CheckExact(s) ? PyUnicode_Join(s, v) : __Pyx_PyBytes_Join(s, v))
@@ -1004,36 +1492,47 @@ static void __Pyx_WriteUnraisable(const char *name, int clineno,
static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values);
#endif
-static CYTHON_INLINE int __Pyx_PyDict_Contains(PyObject* item, PyObject* dict, int eq) {
+/* PyDictContains.proto */
+static CYTHON_INLINE int __Pyx_PyDict_ContainsTF(PyObject* item, PyObject* dict, int eq) {
int result = PyDict_Contains(dict, item);
return unlikely(result < 0) ? result : (result == (eq == Py_EQ));
}
-#if PY_MAJOR_VERSION >= 3
-static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) {
- PyObject *value;
- value = PyDict_GetItemWithError(d, key);
- if (unlikely(!value)) {
- if (!PyErr_Occurred()) {
- PyObject* args = PyTuple_Pack(1, key);
- if (likely(args))
- PyErr_SetObject(PyExc_KeyError, args);
- Py_XDECREF(args);
- }
- return NULL;
- }
- Py_INCREF(value);
- return value;
-}
+/* PyObjectFormat.proto */
+#if CYTHON_USE_UNICODE_WRITER
+static PyObject* __Pyx_PyObject_Format(PyObject* s, PyObject* f);
#else
- #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key)
+#define __Pyx_PyObject_Format(s, f) PyObject_Format(s, f)
#endif
+/* IncludeStringH.proto */
+#include <string.h>
+
+/* JoinPyUnicode.proto */
+static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_count, Py_ssize_t result_ulength,
+ Py_UCS4 max_char);
+
+/* decode_c_string_utf16.proto */
+static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16(const char *s, Py_ssize_t size, const char *errors) {
+ int byteorder = 0;
+ return PyUnicode_DecodeUTF16(s, size, errors, &byteorder);
+}
+static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16LE(const char *s, Py_ssize_t size, const char *errors) {
+ int byteorder = -1;
+ return PyUnicode_DecodeUTF16(s, size, errors, &byteorder);
+}
+static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16BE(const char *s, Py_ssize_t size, const char *errors) {
+ int byteorder = 1;
+ return PyUnicode_DecodeUTF16(s, size, errors, &byteorder);
+}
+
+/* decode_c_bytes.proto */
static CYTHON_INLINE PyObject* __Pyx_decode_c_bytes(
const char* cstring, Py_ssize_t length, Py_ssize_t start, Py_ssize_t stop,
const char* encoding, const char* errors,
PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors));
+/* decode_bytes.proto */
static CYTHON_INLINE PyObject* __Pyx_decode_bytes(
PyObject* string, Py_ssize_t start, Py_ssize_t stop,
const char* encoding, const char* errors,
@@ -1043,47 +1542,167 @@ static CYTHON_INLINE PyObject* __Pyx_decode_bytes(
start, stop, encoding, errors, decode_func);
}
-static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type);
-
-#define __Pyx_SetItemInt(o, i, v, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \
- (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \
- __Pyx_SetItemInt_Fast(o, (Py_ssize_t)i, v, is_list, wraparound, boundscheck) : \
- (is_list ? (PyErr_SetString(PyExc_IndexError, "list assignment index out of range"), -1) : \
- __Pyx_SetItemInt_Generic(o, to_py_func(i), v)))
-static CYTHON_INLINE int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v);
-static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v,
- int is_list, int wraparound, int boundscheck);
-
-#include <string.h>
+/* PyIntBinop.proto */
+#if !CYTHON_COMPILING_IN_PYPY
+static PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, long intval, int inplace);
+#else
+#define __Pyx_PyInt_EqObjC(op1, op2, intval, inplace)\
+ PyObject_RichCompare(op1, op2, Py_EQ)
+ #endif
+/* BufferIndexError.proto */
+static void __Pyx_RaiseBufferIndexError(int axis);
+
+/* MemviewSliceInit.proto */
+#define __Pyx_BUF_MAX_NDIMS %(BUF_MAX_NDIMS)d
+#define __Pyx_MEMVIEW_DIRECT 1
+#define __Pyx_MEMVIEW_PTR 2
+#define __Pyx_MEMVIEW_FULL 4
+#define __Pyx_MEMVIEW_CONTIG 8
+#define __Pyx_MEMVIEW_STRIDED 16
+#define __Pyx_MEMVIEW_FOLLOW 32
+#define __Pyx_IS_C_CONTIG 1
+#define __Pyx_IS_F_CONTIG 2
+static int __Pyx_init_memviewslice(
+ struct __pyx_memoryview_obj *memview,
+ int ndim,
+ __Pyx_memviewslice *memviewslice,
+ int memview_is_new_reference);
+static CYTHON_INLINE int __pyx_add_acquisition_count_locked(
+ __pyx_atomic_int *acquisition_count, PyThread_type_lock lock);
+static CYTHON_INLINE int __pyx_sub_acquisition_count_locked(
+ __pyx_atomic_int *acquisition_count, PyThread_type_lock lock);
+#define __pyx_get_slice_count_pointer(memview) (memview->acquisition_count_aligned_p)
+#define __pyx_get_slice_count(memview) (*__pyx_get_slice_count_pointer(memview))
+#define __PYX_INC_MEMVIEW(slice, have_gil) __Pyx_INC_MEMVIEW(slice, have_gil, __LINE__)
+#define __PYX_XDEC_MEMVIEW(slice, have_gil) __Pyx_XDEC_MEMVIEW(slice, have_gil, __LINE__)
+static CYTHON_INLINE void __Pyx_INC_MEMVIEW(__Pyx_memviewslice *, int, int);
+static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *, int, int);
+
+/* decode_c_string.proto */
static CYTHON_INLINE PyObject* __Pyx_decode_c_string(
const char* cstring, Py_ssize_t start, Py_ssize_t stop,
const char* encoding, const char* errors,
PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors));
+/* ArgTypeTest.proto */
+#define __Pyx_ArgTypeTest(obj, type, none_allowed, name, exact)\
+ ((likely((Py_TYPE(obj) == type) | (none_allowed && (obj == Py_None)))) ? 1 :\
+ __Pyx__ArgTypeTest(obj, type, name, exact))
+static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact);
+
+/* BytesEquals.proto */
+static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals);
+
+/* UnicodeEquals.proto */
+static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals);
+
+/* StrEquals.proto */
+#if PY_MAJOR_VERSION >= 3
+#define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals
+#else
+#define __Pyx_PyString_Equals __Pyx_PyBytes_Equals
+#endif
+
+/* None.proto */
+static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t, Py_ssize_t);
+
+/* UnaryNegOverflows.proto */
+#define UNARY_NEG_WOULD_OVERFLOW(x)\
+ (((x) < 0) & ((unsigned long)(x) == 0-(unsigned long)(x)))
+
+static CYTHON_UNUSED int __pyx_array_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
+static PyObject *__pyx_array_get_memview(struct __pyx_array_obj *); /*proto*/
+/* GetAttr.proto */
+static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *);
+
+/* GetAttr3.proto */
+static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *, PyObject *, PyObject *);
+
+/* RaiseNoneIterError.proto */
static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void);
+/* ExtTypeTest.proto */
+static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type);
+
+/* SwapException.proto */
+#if CYTHON_FAST_THREAD_STATE
+#define __Pyx_ExceptionSwap(type, value, tb) __Pyx__ExceptionSwap(__pyx_tstate, type, value, tb)
+static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
+#else
+static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb);
+#endif
+
+/* Import.proto */
+static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level);
+
+static CYTHON_UNUSED int __pyx_memoryview_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/
+/* ListExtend.proto */
+static CYTHON_INLINE int __Pyx_PyList_Extend(PyObject* L, PyObject* v) {
+#if CYTHON_COMPILING_IN_CPYTHON
+ PyObject* none = _PyList_Extend((PyListObject*)L, v);
+ if (unlikely(!none))
+ return -1;
+ Py_DECREF(none);
+ return 0;
+#else
+ return PyList_SetSlice(L, PY_SSIZE_T_MAX, PY_SSIZE_T_MAX, v);
+#endif
+}
+
+/* None.proto */
+static CYTHON_INLINE long __Pyx_div_long(long, long);
+
+/* ImportFrom.proto */
+static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name);
+
+/* HasAttr.proto */
+static CYTHON_INLINE int __Pyx_HasAttr(PyObject *, PyObject *);
+
+/* PyObject_GenericGetAttrNoDict.proto */
+#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
+static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name);
+#else
+#define __Pyx_PyObject_GenericGetAttrNoDict PyObject_GenericGetAttr
+#endif
+
+/* PyObject_GenericGetAttr.proto */
+#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
+static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name);
+#else
+#define __Pyx_PyObject_GenericGetAttr PyObject_GenericGetAttr
+#endif
+
+/* SetupReduce.proto */
+static int __Pyx_setup_reduce(PyObject* type_obj);
+
+/* SetVTable.proto */
+static int __Pyx_SetVtable(PyObject *dict, void *vtable);
+
+/* CalculateMetaclass.proto */
static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases);
+/* Py3ClassCreate.proto */
static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name, PyObject *qualname,
PyObject *mkw, PyObject *modname, PyObject *doc);
static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases, PyObject *dict,
PyObject *mkw, int calculate_metaclass, int allow_py2_metaclass);
+/* FetchCommonType.proto */
static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type);
+/* CythonFunction.proto */
#define __Pyx_CyFunction_USED 1
-#include <structmember.h>
#define __Pyx_CYFUNCTION_STATICMETHOD 0x01
#define __Pyx_CYFUNCTION_CLASSMETHOD 0x02
#define __Pyx_CYFUNCTION_CCLASS 0x04
-#define __Pyx_CyFunction_GetClosure(f) \
+#define __Pyx_CyFunction_GetClosure(f)\
(((__pyx_CyFunctionObject *) (f))->func_closure)
-#define __Pyx_CyFunction_GetClassObj(f) \
+#define __Pyx_CyFunction_GetClassObj(f)\
(((__pyx_CyFunctionObject *) (f))->func_classobj)
-#define __Pyx_CyFunction_Defaults(type, f) \
+#define __Pyx_CyFunction_Defaults(type, f)\
((type *)(((__pyx_CyFunctionObject *) (f))->defaults))
-#define __Pyx_CyFunction_SetDefaultsGetter(f, g) \
+#define __Pyx_CyFunction_SetDefaultsGetter(f, g)\
((__pyx_CyFunctionObject *) (f))->defaults_getter = (g)
typedef struct {
PyCFunctionObject func;
@@ -1107,7 +1726,7 @@ typedef struct {
PyObject *func_annotations;
} __pyx_CyFunctionObject;
static PyTypeObject *__pyx_CyFunctionType = 0;
-#define __Pyx_CyFunction_NewEx(ml, flags, qualname, self, module, globals, code) \
+#define __Pyx_CyFunction_NewEx(ml, flags, qualname, self, module, globals, code)\
__Pyx_CyFunction_New(__pyx_CyFunctionType, ml, flags, qualname, self, module, globals, code)
static PyObject *__Pyx_CyFunction_New(PyTypeObject *, PyMethodDef *ml,
int flags, PyObject* qualname,
@@ -1123,11 +1742,30 @@ static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m,
PyObject *dict);
static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m,
PyObject *dict);
-static int __Pyx_CyFunction_init(void);
+static int __pyx_CyFunction_init(void);
+
+/* SetNameInClass.proto */
+#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1
+#define __Pyx_SetNameInClass(ns, name, value)\
+ (likely(PyDict_CheckExact(ns)) ? _PyDict_SetItem_KnownHash(ns, name, value, ((PyASCIIObject *) name)->hash) : PyObject_SetItem(ns, name, value))
+#elif CYTHON_COMPILING_IN_CPYTHON
+#define __Pyx_SetNameInClass(ns, name, value)\
+ (likely(PyDict_CheckExact(ns)) ? PyDict_SetItem(ns, name, value) : PyObject_SetItem(ns, name, value))
+#else
+#define __Pyx_SetNameInClass(ns, name, value) PyObject_SetItem(ns, name, value)
+#endif
+/* CLineInTraceback.proto */
+#ifdef CYTHON_CLINE_IN_TRACEBACK
+#define __Pyx_CLineForTraceback(tstate, c_line) (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0)
+#else
+static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line);
+#endif
+
+/* CodeObjectCache.proto */
typedef struct {
- int code_line;
PyCodeObject* code_object;
+ int code_line;
} __Pyx_CodeObjectCacheEntry;
struct __Pyx_CodeObjectCache {
int count;
@@ -1139,126 +1777,75 @@ static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int co
static PyCodeObject *__pyx_find_code_object(int code_line);
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);
+/* AddTraceback.proto */
static void __Pyx_AddTraceback(const char *funcname, int c_line,
int py_line, const char *filename);
-static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level);
+#if PY_MAJOR_VERSION < 3
+ static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags);
+ static void __Pyx_ReleaseBuffer(Py_buffer *view);
+#else
+ #define __Pyx_GetBuffer PyObject_GetBuffer
+ #define __Pyx_ReleaseBuffer PyBuffer_Release
+#endif
-static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);
-static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);
+/* BufferStructDeclare.proto */
+typedef struct {
+ Py_ssize_t shape, strides, suboffsets;
+} __Pyx_Buf_DimInfo;
+typedef struct {
+ size_t refcount;
+ Py_buffer pybuffer;
+} __Pyx_Buffer;
+typedef struct {
+ __Pyx_Buffer *rcbuffer;
+ char *data;
+ __Pyx_Buf_DimInfo diminfo[8];
+} __Pyx_LocalBuf_ND;
-static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);
+/* MemviewSliceIsContig.proto */
+static int __pyx_memviewslice_is_contig(const __Pyx_memviewslice mvs, char order, int ndim);
-static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);
+/* OverlappingSlices.proto */
+static int __pyx_slices_overlap(__Pyx_memviewslice *slice1,
+ __Pyx_memviewslice *slice2,
+ int ndim, size_t itemsize);
-#if CYTHON_CCOMPLEX
- #ifdef __cplusplus
- #define __Pyx_CREAL(z) ((z).real())
- #define __Pyx_CIMAG(z) ((z).imag())
- #else
- #define __Pyx_CREAL(z) (__real__(z))
- #define __Pyx_CIMAG(z) (__imag__(z))
- #endif
-#else
- #define __Pyx_CREAL(z) ((z).real)
- #define __Pyx_CIMAG(z) ((z).imag)
-#endif
-#if (defined(_WIN32) || defined(__clang__)) && defined(__cplusplus) && CYTHON_CCOMPLEX
- #define __Pyx_SET_CREAL(z,x) ((z).real(x))
- #define __Pyx_SET_CIMAG(z,y) ((z).imag(y))
-#else
- #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x)
- #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y)
-#endif
+/* Capsule.proto */
+static CYTHON_INLINE PyObject *__pyx_capsule_create(void *p, const char *sig);
-static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float);
+/* CIntToPy.proto */
+static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);
-#if CYTHON_CCOMPLEX
- #define __Pyx_c_eqf(a, b) ((a)==(b))
- #define __Pyx_c_sumf(a, b) ((a)+(b))
- #define __Pyx_c_difff(a, b) ((a)-(b))
- #define __Pyx_c_prodf(a, b) ((a)*(b))
- #define __Pyx_c_quotf(a, b) ((a)/(b))
- #define __Pyx_c_negf(a) (-(a))
- #ifdef __cplusplus
- #define __Pyx_c_is_zerof(z) ((z)==(float)0)
- #define __Pyx_c_conjf(z) (::std::conj(z))
- #if 1
- #define __Pyx_c_absf(z) (::std::abs(z))
- #define __Pyx_c_powf(a, b) (::std::pow(a, b))
- #endif
- #else
- #define __Pyx_c_is_zerof(z) ((z)==0)
- #define __Pyx_c_conjf(z) (conjf(z))
- #if 1
- #define __Pyx_c_absf(z) (cabsf(z))
- #define __Pyx_c_powf(a, b) (cpowf(a, b))
- #endif
- #endif
-#else
- static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex, __pyx_t_float_complex);
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex, __pyx_t_float_complex);
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex, __pyx_t_float_complex);
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex, __pyx_t_float_complex);
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex, __pyx_t_float_complex);
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex);
- static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex);
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex);
- #if 1
- static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex);
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex, __pyx_t_float_complex);
- #endif
-#endif
+/* CIntToPy.proto */
+static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);
-static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double);
+/* MemviewDtypeToObject.proto */
+static CYTHON_INLINE PyObject *__pyx_memview_get_double(const char *itemp);
+static CYTHON_INLINE int __pyx_memview_set_double(const char *itemp, PyObject *obj);
-#if CYTHON_CCOMPLEX
- #define __Pyx_c_eq(a, b) ((a)==(b))
- #define __Pyx_c_sum(a, b) ((a)+(b))
- #define __Pyx_c_diff(a, b) ((a)-(b))
- #define __Pyx_c_prod(a, b) ((a)*(b))
- #define __Pyx_c_quot(a, b) ((a)/(b))
- #define __Pyx_c_neg(a) (-(a))
- #ifdef __cplusplus
- #define __Pyx_c_is_zero(z) ((z)==(double)0)
- #define __Pyx_c_conj(z) (::std::conj(z))
- #if 1
- #define __Pyx_c_abs(z) (::std::abs(z))
- #define __Pyx_c_pow(a, b) (::std::pow(a, b))
- #endif
- #else
- #define __Pyx_c_is_zero(z) ((z)==0)
- #define __Pyx_c_conj(z) (conj(z))
- #if 1
- #define __Pyx_c_abs(z) (cabs(z))
- #define __Pyx_c_pow(a, b) (cpow(a, b))
- #endif
- #endif
-#else
- static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex, __pyx_t_double_complex);
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex, __pyx_t_double_complex);
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex, __pyx_t_double_complex);
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex, __pyx_t_double_complex);
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex, __pyx_t_double_complex);
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex);
- static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex);
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex);
- #if 1
- static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex);
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex, __pyx_t_double_complex);
- #endif
-#endif
+/* MemviewSliceCopyTemplate.proto */
+static __Pyx_memviewslice
+__pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs,
+ const char *mode, int ndim,
+ size_t sizeof_dtype, int contig_flag,
+ int dtype_is_object);
-static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb);
+/* CIntFromPy.proto */
+static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);
-#define __Pyx_Generator_USED
-#include <structmember.h>
-#include <frameobject.h>
-typedef PyObject *(*__pyx_generator_body_t)(PyObject *, PyObject *);
+/* CIntFromPy.proto */
+static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);
+
+/* CIntFromPy.proto */
+static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *);
+
+/* CoroutineBase.proto */
+typedef PyObject *(*__pyx_coroutine_body_t)(PyObject *, PyThreadState *, PyObject *);
typedef struct {
PyObject_HEAD
- __pyx_generator_body_t body;
+ __pyx_coroutine_body_t body;
PyObject *closure;
PyObject *exc_type;
PyObject *exc_value;
@@ -1268,64 +1855,107 @@ typedef struct {
PyObject *yieldfrom;
PyObject *gi_name;
PyObject *gi_qualname;
+ PyObject *gi_modulename;
+ PyObject *gi_code;
int resume_label;
char is_running;
-} __pyx_GeneratorObject;
-static __pyx_GeneratorObject *__Pyx_Generator_New(__pyx_generator_body_t body,
- PyObject *closure, PyObject *name, PyObject *qualname);
-static int __pyx_Generator_init(void);
-static int __Pyx_Generator_clear(PyObject* self);
-#if 1 || PY_VERSION_HEX < 0x030300B0
-static int __Pyx_PyGen_FetchStopIterationValue(PyObject **pvalue);
+} __pyx_CoroutineObject;
+static __pyx_CoroutineObject *__Pyx__Coroutine_New(
+ PyTypeObject *type, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure,
+ PyObject *name, PyObject *qualname, PyObject *module_name);
+static __pyx_CoroutineObject *__Pyx__Coroutine_NewInit(
+ __pyx_CoroutineObject *gen, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure,
+ PyObject *name, PyObject *qualname, PyObject *module_name);
+static int __Pyx_Coroutine_clear(PyObject *self);
+static PyObject *__Pyx_Coroutine_Send(PyObject *self, PyObject *value);
+static PyObject *__Pyx_Coroutine_Close(PyObject *self);
+static PyObject *__Pyx_Coroutine_Throw(PyObject *gen, PyObject *args);
+#define __Pyx_Coroutine_SwapException(self) {\
+ __Pyx_ExceptionSwap(&(self)->exc_type, &(self)->exc_value, &(self)->exc_traceback);\
+ __Pyx_Coroutine_ResetFrameBackpointer(self);\
+ }
+#define __Pyx_Coroutine_ResetAndClearException(self) {\
+ __Pyx_ExceptionReset((self)->exc_type, (self)->exc_value, (self)->exc_traceback);\
+ (self)->exc_type = (self)->exc_value = (self)->exc_traceback = NULL;\
+ }
+#if CYTHON_FAST_THREAD_STATE
+#define __Pyx_PyGen_FetchStopIterationValue(pvalue)\
+ __Pyx_PyGen__FetchStopIterationValue(__pyx_tstate, pvalue)
#else
-#define __Pyx_PyGen_FetchStopIterationValue(pvalue) PyGen_FetchStopIterationValue(pvalue)
+#define __Pyx_PyGen_FetchStopIterationValue(pvalue)\
+ __Pyx_PyGen__FetchStopIterationValue(__Pyx_PyThreadState_Current, pvalue)
#endif
+static int __Pyx_PyGen__FetchStopIterationValue(PyThreadState *tstate, PyObject **pvalue);
+static CYTHON_INLINE void __Pyx_Coroutine_ResetFrameBackpointer(__pyx_CoroutineObject *self);
-static int __Pyx_check_binary_version(void);
-
-#if !defined(__Pyx_PyIdentifier_FromString)
-#if PY_MAJOR_VERSION < 3
- #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s)
-#else
- #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s)
-#endif
-#endif
+/* PatchModuleWithCoroutine.proto */
+static PyObject* __Pyx_Coroutine_patch_module(PyObject* module, const char* py_code);
-static PyObject *__Pyx_ImportModule(const char *name);
+/* PatchGeneratorABC.proto */
+static int __Pyx_patch_abc(void);
-static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict);
+/* Generator.proto */
+#define __Pyx_Generator_USED
+static PyTypeObject *__pyx_GeneratorType = 0;
+#define __Pyx_Generator_CheckExact(obj) (Py_TYPE(obj) == __pyx_GeneratorType)
+#define __Pyx_Generator_New(body, code, closure, name, qualname, module_name)\
+ __Pyx__Coroutine_New(__pyx_GeneratorType, body, code, closure, name, qualname, module_name)
+static PyObject *__Pyx_Generator_Next(PyObject *self);
+static int __pyx_Generator_init(void);
-static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);
+/* IsLittleEndian.proto */
+static CYTHON_INLINE int __Pyx_Is_Little_Endian(void);
+/* BufferFormatCheck.proto */
+static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts);
+static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx,
+ __Pyx_BufFmt_StackElem* stack,
+ __Pyx_TypeInfo* type);
-/* Module declarations from 'cpython.buffer' */
+/* TypeInfoCompare.proto */
+static int __pyx_typeinfo_cmp(__Pyx_TypeInfo *a, __Pyx_TypeInfo *b);
-/* Module declarations from 'cpython.ref' */
+/* MemviewSliceValidateAndInit.proto */
+static int __Pyx_ValidateAndInit_memviewslice(
+ int *axes_specs,
+ int c_or_f_flag,
+ int buf_flags,
+ int ndim,
+ __Pyx_TypeInfo *dtype,
+ __Pyx_BufFmt_StackElem stack[],
+ __Pyx_memviewslice *memviewslice,
+ PyObject *original_obj);
-/* Module declarations from 'libc.string' */
+/* ObjectToMemviewSlice.proto */
+static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dsds_double(PyObject *, int writable_flag);
-/* Module declarations from 'libc.stdio' */
+/* ObjectToMemviewSlice.proto */
+static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_ds_double(PyObject *, int writable_flag);
-/* Module declarations from 'cpython.object' */
+/* CheckBinaryVersion.proto */
+static int __Pyx_check_binary_version(void);
-/* Module declarations from '__builtin__' */
+/* InitStrings.proto */
+static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);
-/* Module declarations from 'cpython.type' */
-static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0;
+static PyObject *__pyx_array_get_memview(struct __pyx_array_obj *__pyx_v_self); /* proto*/
+static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index); /* proto*/
+static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj); /* proto*/
+static PyObject *__pyx_memoryview_setitem_slice_assignment(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_dst, PyObject *__pyx_v_src); /* proto*/
+static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memoryview_obj *__pyx_v_self, struct __pyx_memoryview_obj *__pyx_v_dst, PyObject *__pyx_v_value); /* proto*/
+static PyObject *__pyx_memoryview_setitem_indexed(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto*/
+static PyObject *__pyx_memoryview_convert_item_to_object(struct __pyx_memoryview_obj *__pyx_v_self, char *__pyx_v_itemp); /* proto*/
+static PyObject *__pyx_memoryview_assign_item_from_object(struct __pyx_memoryview_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value); /* proto*/
+static PyObject *__pyx_memoryviewslice_convert_item_to_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp); /* proto*/
+static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value); /* proto*/
-/* Module declarations from 'libc.stdlib' */
+/* Module declarations from 'cython.view' */
-/* Module declarations from 'numpy' */
+/* Module declarations from 'cython' */
-/* Module declarations from 'numpy' */
-static PyTypeObject *__pyx_ptype_5numpy_dtype = 0;
-static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0;
-static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0;
-static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0;
-static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0;
-static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/
+/* Module declarations from 'libc.string' */
-/* Module declarations from 'cython' */
+/* Module declarations from 'libc.stdlib' */
/* Module declarations from 'silx.io.specfile_wrapper' */
@@ -1333,11 +1963,56 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, cha
static PyTypeObject *__pyx_ptype_4silx_2io_8specfile_SpecFile = 0;
static PyTypeObject *__pyx_ptype_4silx_2io_8specfile___pyx_scope_struct____iter__ = 0;
static PyTypeObject *__pyx_ptype_4silx_2io_8specfile___pyx_scope_struct_1___iter__ = 0;
+static PyTypeObject *__pyx_array_type = 0;
+static PyTypeObject *__pyx_MemviewEnum_type = 0;
+static PyTypeObject *__pyx_memoryview_type = 0;
+static PyTypeObject *__pyx_memoryviewslice_type = 0;
+static PyObject *generic = 0;
+static PyObject *strided = 0;
+static PyObject *indirect = 0;
+static PyObject *contiguous = 0;
+static PyObject *indirect_contiguous = 0;
+static int __pyx_memoryview_thread_locks_used;
+static PyThread_type_lock __pyx_memoryview_thread_locks[8];
+static struct __pyx_array_obj *__pyx_array_new(PyObject *, Py_ssize_t, char *, char *, char *); /*proto*/
+static void *__pyx_align_pointer(void *, size_t); /*proto*/
+static PyObject *__pyx_memoryview_new(PyObject *, int, int, __Pyx_TypeInfo *); /*proto*/
+static CYTHON_INLINE int __pyx_memoryview_check(PyObject *); /*proto*/
+static PyObject *_unellipsify(PyObject *, int); /*proto*/
+static PyObject *assert_direct_dimensions(Py_ssize_t *, int); /*proto*/
+static struct __pyx_memoryview_obj *__pyx_memview_slice(struct __pyx_memoryview_obj *, PyObject *); /*proto*/
+static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *, Py_ssize_t, Py_ssize_t, Py_ssize_t, int, int, int *, Py_ssize_t, Py_ssize_t, Py_ssize_t, int, int, int, int); /*proto*/
+static char *__pyx_pybuffer_index(Py_buffer *, char *, Py_ssize_t, Py_ssize_t); /*proto*/
+static int __pyx_memslice_transpose(__Pyx_memviewslice *); /*proto*/
+static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice, int, PyObject *(*)(char *), int (*)(char *, PyObject *), int); /*proto*/
+static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __pyx_memoryview_obj *, __Pyx_memviewslice *); /*proto*/
+static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *, __Pyx_memviewslice *); /*proto*/
+static PyObject *__pyx_memoryview_copy_object(struct __pyx_memoryview_obj *); /*proto*/
+static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview_obj *, __Pyx_memviewslice *); /*proto*/
+static Py_ssize_t abs_py_ssize_t(Py_ssize_t); /*proto*/
+static char __pyx_get_best_slice_order(__Pyx_memviewslice *, int); /*proto*/
+static void _copy_strided_to_strided(char *, Py_ssize_t *, char *, Py_ssize_t *, Py_ssize_t *, Py_ssize_t *, int, size_t); /*proto*/
+static void copy_strided_to_strided(__Pyx_memviewslice *, __Pyx_memviewslice *, int, size_t); /*proto*/
+static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *, int); /*proto*/
+static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *, Py_ssize_t *, Py_ssize_t, int, char); /*proto*/
+static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *, __Pyx_memviewslice *, char, int); /*proto*/
+static int __pyx_memoryview_err_extents(int, Py_ssize_t, Py_ssize_t); /*proto*/
+static int __pyx_memoryview_err_dim(PyObject *, char *, int); /*proto*/
+static int __pyx_memoryview_err(PyObject *, char *); /*proto*/
+static int __pyx_memoryview_copy_contents(__Pyx_memviewslice, __Pyx_memviewslice, int, int, int); /*proto*/
+static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *, int, int); /*proto*/
+static void __pyx_memoryview_refcount_copying(__Pyx_memviewslice *, int, int, int); /*proto*/
+static void __pyx_memoryview_refcount_objects_in_slice_with_gil(char *, Py_ssize_t *, Py_ssize_t *, int, int); /*proto*/
+static void __pyx_memoryview_refcount_objects_in_slice(char *, Py_ssize_t *, Py_ssize_t *, int, int); /*proto*/
+static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *, int, size_t, void *, int); /*proto*/
+static void __pyx_memoryview__slice_assign_scalar(char *, Py_ssize_t *, Py_ssize_t *, int, size_t, void *); /*proto*/
+static PyObject *__pyx_unpickle_Enum__set_state(struct __pyx_MemviewEnum_obj *, PyObject *); /*proto*/
+static __Pyx_TypeInfo __Pyx_TypeInfo_double = { "double", NULL, sizeof(double), { 0 }, 0, 'R', 0, 0 };
#define __Pyx_MODULE_NAME "silx.io.specfile"
+extern int __pyx_module_is_main_silx__io__specfile;
int __pyx_module_is_main_silx__io__specfile = 0;
/* Implementation of 'silx.io.specfile' */
-static PyObject *__pyx_builtin_Exception;
static PyObject *__pyx_builtin_MemoryError;
static PyObject *__pyx_builtin_IOError;
static PyObject *__pyx_builtin_KeyError;
@@ -1351,357 +2026,350 @@ static PyObject *__pyx_builtin_open;
static PyObject *__pyx_builtin_enumerate;
static PyObject *__pyx_builtin_ValueError;
static PyObject *__pyx_builtin_AttributeError;
-static PyObject *__pyx_builtin_RuntimeError;
-static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_scan); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_2_parse_channels(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_4_parse_calibration(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_6__len__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_8__getitem__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_10__iter__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile__add_or_concatenate(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dictionary, PyObject *__pyx_v_key, PyObject *__pyx_v_value); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_specfile, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_2index(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_4number(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_6order(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_8header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_10scan_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_12file_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_14scan_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_16mca_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_18file_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_20labels(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_22data(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_24mca(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_26motor_names(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_28motor_positions(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_30record_exists_in_hdr(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_record); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_32data_line(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_line_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_34data_column_by_name(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_label); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_36motor_position_by_name(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_name); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_2_string_to_char_star(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_string_); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_4is_specfile(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_filename); /* proto */
-static int __pyx_pf_4silx_2io_8specfile_8SpecFile___cinit__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_filename); /* proto */
-static int __pyx_pf_4silx_2io_8specfile_8SpecFile_2__init__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_filename); /* proto */
-static void __pyx_pf_4silx_2io_8specfile_8SpecFile_4__dealloc__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_6close(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
-static Py_ssize_t __pyx_pf_4silx_2io_8specfile_8SpecFile_8__len__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_10__iter__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_13__getitem__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_15keys(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
-static int __pyx_pf_4silx_2io_8specfile_8SpecFile_17__contains__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_19_get_error_string(CYTHON_UNUSED struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_error_code); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_21_handle_error(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_error_code); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_23index(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_number, PyObject *__pyx_v_scan_order); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_25number(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_27order(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_29_list(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_31list(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_33data(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_35data_column_by_name(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_label); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_37scan_header(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_39file_header(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_41columns(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_43command(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_45date(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_47labels(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_49motor_names(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_51motor_positions(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_53motor_position_by_name(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_name); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_55number_of_mca(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_57mca_calibration(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_59get_mca(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_mca_index); /* proto */
-static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
-static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */
-static PyObject *__pyx_tp_new_4silx_2io_8specfile_SpecFile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
-static PyObject *__pyx_tp_new_4silx_2io_8specfile___pyx_scope_struct____iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
-static PyObject *__pyx_tp_new_4silx_2io_8specfile___pyx_scope_struct_1___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
-static char __pyx_k_[] = "\n";
-static char __pyx_k_2[] = " {2,}";
-static char __pyx_k_3[] = "3";
-static char __pyx_k_B[] = "B";
-static char __pyx_k_F[] = "#F ";
-static char __pyx_k_H[] = "H";
-static char __pyx_k_I[] = "I";
-static char __pyx_k_L[] = "L";
-static char __pyx_k_O[] = "O";
-static char __pyx_k_Q[] = "Q";
-static char __pyx_k_S[] = "#S ";
-static char __pyx_k_b[] = "b";
-static char __pyx_k_d[] = "d";
-static char __pyx_k_f[] = "f";
-static char __pyx_k_g[] = "g";
-static char __pyx_k_h[] = "h";
-static char __pyx_k_i[] = "i";
-static char __pyx_k_l[] = "l";
-static char __pyx_k_q[] = "q";
-static char __pyx_k_w[] = "#(\\w+) *(.*)";
-static char __pyx_k_Zd[] = "Zd";
-static char __pyx_k_Zf[] = "Zf";
-static char __pyx_k_Zg[] = "Zg";
-static char __pyx_k__7[] = "#";
-static char __pyx_k_os[] = "os";
-static char __pyx_k_rb[] = "rb";
-static char __pyx_k_re[] = "re";
-static char __pyx_k_MCA[] = "MCA";
-static char __pyx_k_MIT[] = "MIT";
-static char __pyx_k__14[] = " ";
-static char __pyx_k__28[] = ".";
-static char __pyx_k__30[] = "', '";
-static char __pyx_k__31[] = "'";
-static char __pyx_k__32[] = "";
-static char __pyx_k_d_d[] = "%d.%d";
-static char __pyx_k_doc[] = "__doc__";
-static char __pyx_k_key[] = "key";
-static char __pyx_k_len[] = "__len__";
-static char __pyx_k_map[] = "map";
-static char __pyx_k_mca[] = "_mca";
-static char __pyx_k_msg[] = "msg";
-static char __pyx_k_ret[] = "ret";
-static char __pyx_k_sub[] = "sub";
-static char __pyx_k_sys[] = "sys";
-static char __pyx_k_w_2[] = "#@(\\w+) *(.*)";
-static char __pyx_k_Scan[] = "Scan";
-static char __pyx_k_args[] = "args";
-static char __pyx_k_data[] = "_data";
-static char __pyx_k_date[] = "__date__";
-static char __pyx_k_exit[] = "__exit__";
-static char __pyx_k_hkey[] = "hkey";
-static char __pyx_k_init[] = "__init__";
-static char __pyx_k_iter[] = "__iter__";
-static char __pyx_k_join[] = "join";
-static char __pyx_k_keys[] = "keys";
-static char __pyx_k_line[] = "line";
-static char __pyx_k_list[] = "_list";
-static char __pyx_k_main[] = "__main__";
-static char __pyx_k_name[] = "name";
-static char __pyx_k_open[] = "open";
-static char __pyx_k_path[] = "path";
-static char __pyx_k_read[] = "read";
-static char __pyx_k_scan[] = "scan";
-static char __pyx_k_self[] = "self";
-static char __pyx_k_send[] = "send";
-static char __pyx_k_stop[] = "stop";
-static char __pyx_k_test[] = "__test__";
-static char __pyx_k_CALIB[] = "CALIB";
-static char __pyx_k_CHANN[] = "CHANN";
-static char __pyx_k_ascii[] = "ascii";
-static char __pyx_k_chunk[] = "chunk";
-static char __pyx_k_close[] = "close";
-static char __pyx_k_dtype[] = "dtype";
-static char __pyx_k_empty[] = "empty";
-static char __pyx_k_enter[] = "__enter__";
-static char __pyx_k_group[] = "group";
-static char __pyx_k_index[] = "index";
-static char __pyx_k_label[] = "label";
-static char __pyx_k_match[] = "match";
-static char __pyx_k_mca_2[] = "mca";
-static char __pyx_k_numpy[] = "numpy";
-static char __pyx_k_order[] = "order";
-static char __pyx_k_range[] = "range";
-static char __pyx_k_shape[] = "shape";
-static char __pyx_k_split[] = "split";
-static char __pyx_k_start[] = "start";
-static char __pyx_k_strip[] = "strip";
-static char __pyx_k_throw[] = "throw";
-static char __pyx_k_value[] = "value";
-static char __pyx_k_ERRORS[] = "ERRORS";
-static char __pyx_k_append[] = "append";
-static char __pyx_k_data_2[] = "data";
-static char __pyx_k_decode[] = "decode";
-static char __pyx_k_double[] = "double";
-static char __pyx_k_encode[] = "encode";
-static char __pyx_k_header[] = "_header";
-static char __pyx_k_hvalue[] = "hvalue";
-static char __pyx_k_import[] = "__import__";
-static char __pyx_k_isfile[] = "isfile";
-static char __pyx_k_labels[] = "_labels";
-static char __pyx_k_length[] = "length";
-static char __pyx_k_logger[] = "_logger";
-static char __pyx_k_lstrip[] = "lstrip";
-static char __pyx_k_module[] = "__module__";
-static char __pyx_k_name_2[] = "__name__";
-static char __pyx_k_number[] = "number";
-static char __pyx_k_object[] = "object";
-static char __pyx_k_record[] = "record";
-static char __pyx_k_scan_2[] = "_scan";
-static char __pyx_k_search[] = "search";
-static char __pyx_k_string[] = "string_";
-static char __pyx_k_IOError[] = "IOError";
-static char __pyx_k_SfError[] = "SfError";
-static char __pyx_k_authors[] = "__authors__";
-static char __pyx_k_get_mca[] = "get_mca";
-static char __pyx_k_getitem[] = "__getitem__";
-static char __pyx_k_index_2[] = "_index";
-static char __pyx_k_license[] = "__license__";
-static char __pyx_k_logging[] = "logging";
-static char __pyx_k_order_2[] = "_order";
-static char __pyx_k_os_path[] = "os.path";
-static char __pyx_k_prepare[] = "__prepare__";
-static char __pyx_k_version[] = "version";
-static char __pyx_k_warning[] = "warning";
-static char __pyx_k_KeyError[] = "KeyError";
-static char __pyx_k_L_header[] = "L_header";
-static char __pyx_k_P_Knobel[] = "P. Knobel";
-static char __pyx_k_Scan_mca[] = "Scan.mca";
-static char __pyx_k_channels[] = "channels";
-static char __pyx_k_filename[] = "filename";
-static char __pyx_k_header_2[] = "header";
-static char __pyx_k_labels_2[] = "labels";
-static char __pyx_k_number_2[] = "_number";
-static char __pyx_k_property[] = "property";
-static char __pyx_k_qualname[] = "__qualname__";
-static char __pyx_k_specfile[] = "_specfile";
-static char __pyx_k_Exception[] = "Exception";
-static char __pyx_k_MCA___len[] = "MCA.__len__";
-static char __pyx_k_Scan_data[] = "Scan.data";
-static char __pyx_k_TypeError[] = "TypeError";
-static char __pyx_k_data_line[] = "data_line";
-static char __pyx_k_enumerate[] = "enumerate";
-static char __pyx_k_getLogger[] = "getLogger";
-static char __pyx_k_increment[] = "increment";
-static char __pyx_k_match_mca[] = "match_mca";
-static char __pyx_k_mca_index[] = "mca_index";
-static char __pyx_k_metaclass[] = "__metaclass__";
-static char __pyx_k_transpose[] = "transpose";
-static char __pyx_k_11_08_2017[] = "11/08/2017";
-static char __pyx_k_IndexError[] = "IndexError";
-static char __pyx_k_MCA___init[] = "MCA.__init__";
-static char __pyx_k_MCA___iter[] = "MCA.__iter__";
-static char __pyx_k_Scan_index[] = "Scan.index";
-static char __pyx_k_Scan_order[] = "Scan.order";
-static char __pyx_k_Valid_keys[] = "\nValid keys: '";
-static char __pyx_k_ValueError[] = "ValueError";
-static char __pyx_k_calib_line[] = "calib_line";
-static char __pyx_k_chann_line[] = "chann_line";
-static char __pyx_k_dictionary[] = "dictionary";
-static char __pyx_k_line_index[] = "line_index";
-static char __pyx_k_scan_index[] = "scan_index";
-static char __pyx_k_scan_order[] = "scan_order";
-static char __pyx_k_specfile_2[] = "specfile";
-static char __pyx_k_startswith[] = "startswith";
-static char __pyx_k_MemoryError[] = "MemoryError";
-static char __pyx_k_Scan___init[] = "Scan.__init__";
-static char __pyx_k_Scan_header[] = "Scan.header";
-static char __pyx_k_Scan_labels[] = "Scan.labels";
-static char __pyx_k_Scan_number[] = "Scan.number";
-static char __pyx_k_calib_lines[] = "calib_lines";
-static char __pyx_k_calibration[] = "calibration";
-static char __pyx_k_chann_lines[] = "chann_lines";
-static char __pyx_k_file_header[] = "file_header";
-static char __pyx_k_is_specfile[] = "is_specfile";
-static char __pyx_k_motor_names[] = "motor_names";
-static char __pyx_k_scan_header[] = "scan_header";
-static char __pyx_k_scan_number[] = "scan_number";
-static char __pyx_k_RuntimeError[] = "RuntimeError";
-static char __pyx_k_SfNoMcaError[] = "SfNoMcaError";
-static char __pyx_k_handle_error[] = "_handle_error";
-static char __pyx_k_version_info[] = "version_info";
-static char __pyx_k_MCA___getitem[] = "MCA.__getitem__";
-static char __pyx_k_SfErrFileOpen[] = "SfErrFileOpen";
-static char __pyx_k_SfErrFileRead[] = "SfErrFileRead";
-static char __pyx_k_motor_names_2[] = "_motor_names";
-static char __pyx_k_number_of_mca[] = "number_of_mca";
-static char __pyx_k_AttributeError[] = "AttributeError";
-static char __pyx_k_Scan_data_line[] = "Scan.data_line";
-static char __pyx_k_SfErrFileClose[] = "SfErrFileClose";
-static char __pyx_k_SfErrFileWrite[] = "SfErrFileWrite";
-static char __pyx_k_SfErrLineEmpty[] = "SfErrLineEmpty";
-static char __pyx_k_parse_channels[] = "_parse_channels";
-static char __pyx_k_SpecFile___iter[] = "SpecFile.__iter__";
-static char __pyx_k_mca_header_dict[] = "mca_header_dict";
-static char __pyx_k_motor_positions[] = "motor_positions";
-static char __pyx_k_SF_ERR_FILE_OPEN[] = "SF_ERR_FILE_OPEN";
-static char __pyx_k_SF_ERR_NO_ERRORS[] = "SF_ERR_NO_ERRORS";
-static char __pyx_k_Scan_file_header[] = "Scan.file_header";
-static char __pyx_k_Scan_motor_names[] = "Scan.motor_names";
-static char __pyx_k_Scan_scan_header[] = "Scan.scan_header";
-static char __pyx_k_SfErrColNotFound[] = "SfErrColNotFound";
-static char __pyx_k_SfErrMcaNotFound[] = "SfErrMcaNotFound";
-static char __pyx_k_SfErrMemoryAlloc[] = "SfErrMemoryAlloc";
-static char __pyx_k_all_calib_values[] = "all_calib_values";
-static char __pyx_k_all_chann_values[] = "all_chann_values";
-static char __pyx_k_file_header_dict[] = "_file_header_dict";
-static char __pyx_k_get_error_string[] = "_get_error_string";
-static char __pyx_k_scan_header_dict[] = "_scan_header_dict";
-static char __pyx_k_silx_io_specfile[] = "silx.io.specfile";
-static char __pyx_k_SfErrLineNotFound[] = "SfErrLineNotFound";
-static char __pyx_k_SfErrScanNotFound[] = "SfErrScanNotFound";
-static char __pyx_k_SfErrUserNotFound[] = "SfErrUserNotFound";
-static char __pyx_k_file_header_lines[] = "_file_header_lines";
-static char __pyx_k_mca_header_dict_2[] = "_mca_header_dict";
-static char __pyx_k_motor_positions_2[] = "_motor_positions";
-static char __pyx_k_parse_calibration[] = "_parse_calibration";
-static char __pyx_k_scan_header_lines[] = "_scan_header_lines";
-static char __pyx_k_SfErrLabelNotFound[] = "SfErrLabelNotFound";
-static char __pyx_k_SfErrMotorNotFound[] = "SfErrMotorNotFound";
-static char __pyx_k_SfNoMca_returned_1[] = "(SfNoMca returned -1)";
-static char __pyx_k_add_or_concatenate[] = "_add_or_concatenate";
-static char __pyx_k_file_header_dict_2[] = "file_header_dict";
-static char __pyx_k_scan_header_dict_2[] = "scan_header_dict";
-static char __pyx_k_MCA__parse_channels[] = "MCA._parse_channels";
-static char __pyx_k_SfErrHeaderNotFound[] = "SfErrHeaderNotFound";
-static char __pyx_k_data_column_by_name[] = "data_column_by_name";
-static char __pyx_k_string_to_char_star[] = "_string_to_char_star";
-static char __pyx_k_Scan_mca_header_dict[] = "Scan.mca_header_dict";
-static char __pyx_k_Scan_motor_positions[] = "Scan.motor_positions";
-static char __pyx_k_record_exists_in_hdr[] = "record_exists_in_hdr";
-static char __pyx_k_SF_ERR_SCAN_NOT_FOUND[] = "SF_ERR_SCAN_NOT_FOUND";
-static char __pyx_k_Scan_file_header_dict[] = "Scan.file_header_dict";
-static char __pyx_k_Scan_scan_header_dict[] = "Scan.scan_header_dict";
-static char __pyx_k_SfErrPositionNotFound[] = "SfErrPositionNotFound";
-static char __pyx_k_one_line_calib_values[] = "one_line_calib_values";
-static char __pyx_k_one_line_chann_values[] = "one_line_chann_values";
-static char __pyx_k_MCA__parse_calibration[] = "MCA._parse_calibration";
-static char __pyx_k_motor_position_by_name[] = "motor_position_by_name";
-static char __pyx_k_Scan_data_column_by_name[] = "Scan.data_column_by_name";
-static char __pyx_k_Scan_record_exists_in_hdr[] = "Scan.record_exists_in_hdr";
-static char __pyx_k_Scan_motor_position_by_name[] = "Scan.motor_position_by_name";
-static char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous";
-static char __pyx_k_Error_while_closing_SpecFile[] = "Error while closing SpecFile";
-static char __pyx_k_number_and_M_the_order_eg_2_3[] = " number and M the order (eg '2.3').";
-static char __pyx_k_MCA_index_must_be_in_range_0_d[] = "MCA index must be in range 0-%d";
-static char __pyx_k_param_specfile_Parent_SpecFile[] = "\n\n :param specfile: Parent SpecFile from which this scan is extracted.\n :type specfile: :class:`SpecFile`\n :param scan_index: Unique index defining the scan in the SpecFile\n :type scan_index: int\n\n Interface to access a SpecFile scan\n\n A scan is a block of descriptive header lines followed by a 2D data array.\n\n Following three ways of accessing a scan are equivalent::\n\n sf = SpecFile(\"/path/to/specfile.dat\")\n\n # Explicit class instantiation\n scan2 = Scan(sf, scan_index=2)\n\n # 0-based index on a SpecFile object\n scan2 = sf[2]\n\n # Using a \"n.m\" key (scan number starting with 1, scan order)\n scan2 = sf[\"3.1\"]\n ";
-static char __pyx_k_Base_exception_inherited_by_all[] = "Base exception inherited by all exceptions raised when a\n C function from the legacy SpecFile library returns an error\n code.\n ";
-static char __pyx_k_Scan_index_must_be_in_range_0_d[] = "Scan index must be in range 0-%d";
-static char __pyx_k_The_scan_identification_key_can[] = "The scan identification key can be an integer representing ";
-static char __pyx_k_This_module_is_a_cython_binding[] = "\nThis module is a cython binding to wrap the C SpecFile library, to access\nSpecFile data within a python program.\n\nDocumentation for the original C library SpecFile can be found on the ESRF\nwebsite:\n`The manual for the SpecFile Library <http://www.esrf.eu/files/live/sites/www/files/Instrumentation/software/beamline-control/BLISS/documentation/SpecFileManual.pdf>`_\n\nExamples\n========\n\nStart by importing :class:`SpecFile` and instantiate it:\n\n.. code-block:: python\n\n from silx.io.specfile import SpecFile\n\n sf = SpecFile(\"test.dat\")\n\nA :class:`SpecFile` instance can be accessed like a dictionary to obtain a\n:class:`Scan` instance.\n\nIf the key is a string representing two values\nseparated by a dot (e.g. ``\"1.2\"``), they will be treated as the scan number\n(``#S`` header line) and the scan order::\n\n # get second occurrence of scan \"#S 1\"\n myscan = sf[\"1.2\"]\n\n # access scan data as a numpy array\n nlines, ncolumns = myscan.data.shape\n\nIf the key is an integer, it will be treated as a 0-based index::\n\n first_scan = sf[0]\n second_scan = sf[1]\n\nIt is also possible to browse through all scans using :class:`SpecFile` as\nan iterator::\n\n for scan in sf:\n print(scan.scan_header_dict['S'])\n\nMCA spectra can be selectively loaded using an instance of :class:`MCA`\nprovided by :class:`Scan`::\n\n # Only one MCA spectrum is loaded in memory\n second_mca = first_scan.mca[1]\n\n # Iterating trough all MCA spectra in a scan:\n for mca_data in first_scan.mca:\n print(sum(mca_data))\n\nClasses\n=======\n\n- :class:`SpecFile`\n- :class:`Scan`\n- :class:`MCA`\n\nExceptions\n==========\n\n- :class:`SfError`\n- :class:`SfErrMemoryAlloc`\n- :class:`SfErrFileOpen`\n- :class:`SfErrFileClose`\n- :class:`SfErrFileRead`\n- :class:`SfErrFileWrite`\n- :class:`SfErrLineNotFound`\n- :class:`SfErrScanNotFound`\n- :class:`SfErrHeaderNotFound`\n- :class:`SfErrLabelNotFound`\n- :class:`SfErrMotorNotFound`""\n- :class:`SfErrPositionNotFound`\n- :class:`SfErrLineEmpty`\n- :class:`SfErrUserNotFound`\n- :class:`SfErrColNotFound`\n- :class:`SfErrMcaNotFound`\n\n";
-static char __pyx_k_param_scan_Parent_Scan_instance[] = "\n\n :param scan: Parent Scan instance\n :type scan: :class:`Scan`\n\n :var calibration: MCA calibration :math:`(a, b, c)` (as in\n :math:`a + b x + c x\302\262`) from ``#@CALIB`` scan header.\n :type calibration: list of 3 floats, default ``[0., 1., 0.]``\n :var channels: MCA channels list from ``#@CHANN`` scan header.\n In the absence of a ``#@CHANN`` header, this attribute is a list\n ``[0, \342\200\246, N-1]`` where ``N`` is the length of the first spectrum.\n In the absence of MCA spectra, this attribute defaults to ``None``.\n :type channels: list of int\n\n This class provides access to Multi-Channel Analysis data. A :class:`MCA`\n instance can be indexed to access 1D numpy arrays representing single\n MCA\302\240spectra.\n\n To create a :class:`MCA` instance, you must provide a parent :class:`Scan`\n instance, which in turn will provide a reference to the original\n :class:`SpecFile` instance::\n\n sf = SpecFile(\"/path/to/specfile.dat\")\n scan2 = Scan(sf, scan_index=2)\n mcas_in_scan2 = MCA(scan2)\n for i in len(mcas_in_scan2):\n mca_data = mcas_in_scan2[i]\n ... # do some something with mca_data (1D numpy array)\n\n A more pythonic way to do the same work, without having to explicitly\n instantiate ``scan`` and ``mcas_in_scan``, would be::\n\n sf = SpecFile(\"specfilename.dat\")\n # scan2 from previous example can be referred to as sf[2]\n # mcas_in_scan2 from previous example can be referred to as scan2.mca\n for mca_data in sf[2].mca:\n ... # do some something with mca_data (1D numpy array)\n\n ";
-static char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)";
-static char __pyx_k_users_knobel_git_silx_silx_io_s[] = "/users/knobel/git/silx/silx/io/specfile.pyx";
-static char __pyx_k_Cannot_get_data_column_s_in_scan[] = "Cannot get data column %s in scan %d.%d";
-static char __pyx_k_Custom_exception_raised_when_SfN[] = "Custom exception raised when ``SfNoMca()`` returns ``-1``\n ";
-static char __pyx_k_Failed_to_retrieve_number_of_MCA[] = "Failed to retrieve number of MCA ";
-static char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd";
-static char __pyx_k_MCA_calibration_line_CALIB_not_f[] = "MCA calibration line (@CALIB) not found";
-static char __pyx_k_MCA_index_should_be_an_integer_s[] = "MCA index should be an integer (%s provided)";
-static char __pyx_k_No_MCA_spectrum_found_in_this_sc[] = "No MCA spectrum found in this scan";
-static char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported";
-static char __pyx_k_Parameter_value_must_be_a_string[] = "Parameter value must be a string.";
-static char __pyx_k_Unable_to_parse_file_header_line[] = "Unable to parse file header line ";
-static char __pyx_k_Unable_to_parse_scan_header_line[] = "Unable to parse scan header line ";
-static char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous";
-static char __pyx_k_the_unique_scan_index_or_a_strin[] = "the unique scan index or a string 'N.M' with N being the scan";
-static char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short.";
+static PyObject *__pyx_builtin_Ellipsis;
+static PyObject *__pyx_builtin_id;
+static const char __pyx_k_[] = "\n";
+static const char __pyx_k_2[] = " {2,}";
+static const char __pyx_k_F[] = "#F ";
+static const char __pyx_k_L[] = "L";
+static const char __pyx_k_O[] = "O";
+static const char __pyx_k_S[] = "#S ";
+static const char __pyx_k_c[] = "c";
+static const char __pyx_k_d[] = "d";
+static const char __pyx_k_f[] = "f";
+static const char __pyx_k_i[] = "i";
+static const char __pyx_k_w[] = "#(\\w+) *(.*)";
+static const char __pyx_k__8[] = "#";
+static const char __pyx_k_id[] = "id";
+static const char __pyx_k_os[] = "os";
+static const char __pyx_k_rb[] = "rb";
+static const char __pyx_k_re[] = "re";
+static const char __pyx_k_MCA[] = "MCA";
+static const char __pyx_k_MIT[] = "MIT";
+static const char __pyx_k__15[] = " ";
+static const char __pyx_k__28[] = ".";
+static const char __pyx_k__30[] = "', '";
+static const char __pyx_k__31[] = "'";
+static const char __pyx_k_doc[] = "__doc__";
+static const char __pyx_k_key[] = "key";
+static const char __pyx_k_len[] = "__len__";
+static const char __pyx_k_map[] = "map";
+static const char __pyx_k_mca[] = "_mca";
+static const char __pyx_k_msg[] = "msg";
+static const char __pyx_k_new[] = "__new__";
+static const char __pyx_k_obj[] = "obj";
+static const char __pyx_k_ret[] = "ret";
+static const char __pyx_k_sub[] = "sub";
+static const char __pyx_k_sys[] = "sys";
+static const char __pyx_k_w_2[] = "#@(\\w+) *(.*)";
+static const char __pyx_k_Scan[] = "Scan";
+static const char __pyx_k_args[] = "args";
+static const char __pyx_k_base[] = "base";
+static const char __pyx_k_data[] = "_data";
+static const char __pyx_k_date[] = "__date__";
+static const char __pyx_k_dict[] = "__dict__";
+static const char __pyx_k_exit[] = "__exit__";
+static const char __pyx_k_hkey[] = "hkey";
+static const char __pyx_k_init[] = "__init__";
+static const char __pyx_k_iter[] = "__iter__";
+static const char __pyx_k_join[] = "join";
+static const char __pyx_k_keys[] = "keys";
+static const char __pyx_k_line[] = "line";
+static const char __pyx_k_list[] = "_list";
+static const char __pyx_k_main[] = "__main__";
+static const char __pyx_k_mode[] = "mode";
+static const char __pyx_k_name[] = "name";
+static const char __pyx_k_ndim[] = "ndim";
+static const char __pyx_k_open[] = "open";
+static const char __pyx_k_pack[] = "pack";
+static const char __pyx_k_path[] = "path";
+static const char __pyx_k_read[] = "read";
+static const char __pyx_k_scan[] = "scan";
+static const char __pyx_k_self[] = "self";
+static const char __pyx_k_send[] = "send";
+static const char __pyx_k_size[] = "size";
+static const char __pyx_k_step[] = "step";
+static const char __pyx_k_stop[] = "stop";
+static const char __pyx_k_test[] = "__test__";
+static const char __pyx_k_ASCII[] = "ASCII";
+static const char __pyx_k_CALIB[] = "CALIB";
+static const char __pyx_k_CHANN[] = "CHANN";
+static const char __pyx_k_ascii[] = "ascii";
+static const char __pyx_k_chunk[] = "chunk";
+static const char __pyx_k_class[] = "__class__";
+static const char __pyx_k_close[] = "close";
+static const char __pyx_k_dtype[] = "dtype";
+static const char __pyx_k_empty[] = "empty";
+static const char __pyx_k_enter[] = "__enter__";
+static const char __pyx_k_error[] = "error";
+static const char __pyx_k_flags[] = "flags";
+static const char __pyx_k_group[] = "group";
+static const char __pyx_k_index[] = "index";
+static const char __pyx_k_label[] = "label";
+static const char __pyx_k_match[] = "match";
+static const char __pyx_k_mca_2[] = "mca";
+static const char __pyx_k_numpy[] = "numpy";
+static const char __pyx_k_order[] = "order";
+static const char __pyx_k_range[] = "range";
+static const char __pyx_k_shape[] = "shape";
+static const char __pyx_k_split[] = "split";
+static const char __pyx_k_start[] = "start";
+static const char __pyx_k_strip[] = "strip";
+static const char __pyx_k_throw[] = "throw";
+static const char __pyx_k_value[] = "value";
+static const char __pyx_k_ERRORS[] = "ERRORS";
+static const char __pyx_k_append[] = "append";
+static const char __pyx_k_data_2[] = "data";
+static const char __pyx_k_decode[] = "decode";
+static const char __pyx_k_double[] = "double";
+static const char __pyx_k_encode[] = "encode";
+static const char __pyx_k_format[] = "format";
+static const char __pyx_k_header[] = "_header";
+static const char __pyx_k_hvalue[] = "hvalue";
+static const char __pyx_k_import[] = "__import__";
+static const char __pyx_k_isfile[] = "isfile";
+static const char __pyx_k_labels[] = "_labels";
+static const char __pyx_k_length[] = "length";
+static const char __pyx_k_logger[] = "_logger";
+static const char __pyx_k_lstrip[] = "lstrip";
+static const char __pyx_k_module[] = "__module__";
+static const char __pyx_k_name_2[] = "__name__";
+static const char __pyx_k_number[] = "number";
+static const char __pyx_k_object[] = "object";
+static const char __pyx_k_pickle[] = "pickle";
+static const char __pyx_k_record[] = "record";
+static const char __pyx_k_reduce[] = "__reduce__";
+static const char __pyx_k_scan_2[] = "_scan";
+static const char __pyx_k_search[] = "search";
+static const char __pyx_k_string[] = "string_";
+static const char __pyx_k_struct[] = "struct";
+static const char __pyx_k_unpack[] = "unpack";
+static const char __pyx_k_update[] = "update";
+static const char __pyx_k_IOError[] = "IOError";
+static const char __pyx_k_SfError[] = "SfError";
+static const char __pyx_k_asarray[] = "asarray";
+static const char __pyx_k_authors[] = "__authors__";
+static const char __pyx_k_fortran[] = "fortran";
+static const char __pyx_k_get_mca[] = "get_mca";
+static const char __pyx_k_getitem[] = "__getitem__";
+static const char __pyx_k_index_2[] = "_index";
+static const char __pyx_k_license[] = "__license__";
+static const char __pyx_k_logging[] = "logging";
+static const char __pyx_k_memview[] = "memview";
+static const char __pyx_k_order_2[] = "_order";
+static const char __pyx_k_os_path[] = "os.path";
+static const char __pyx_k_prepare[] = "__prepare__";
+static const char __pyx_k_warning[] = "warning";
+static const char __pyx_k_Ellipsis[] = "Ellipsis";
+static const char __pyx_k_KeyError[] = "KeyError";
+static const char __pyx_k_L_header[] = "L_header";
+static const char __pyx_k_P_Knobel[] = "P. Knobel";
+static const char __pyx_k_Scan_mca[] = "Scan.mca";
+static const char __pyx_k_channels[] = "channels";
+static const char __pyx_k_filename[] = "filename";
+static const char __pyx_k_getstate[] = "__getstate__";
+static const char __pyx_k_header_2[] = "header";
+static const char __pyx_k_itemsize[] = "itemsize";
+static const char __pyx_k_labels_2[] = "labels";
+static const char __pyx_k_number_2[] = "_number";
+static const char __pyx_k_property[] = "property";
+static const char __pyx_k_pyx_type[] = "__pyx_type";
+static const char __pyx_k_qualname[] = "__qualname__";
+static const char __pyx_k_setstate[] = "__setstate__";
+static const char __pyx_k_specfile[] = "_specfile";
+static const char __pyx_k_MCA___len[] = "MCA.__len__";
+static const char __pyx_k_Scan_data[] = "Scan.data";
+static const char __pyx_k_TypeError[] = "TypeError";
+static const char __pyx_k_data_line[] = "data_line";
+static const char __pyx_k_enumerate[] = "enumerate";
+static const char __pyx_k_getLogger[] = "getLogger";
+static const char __pyx_k_increment[] = "increment";
+static const char __pyx_k_match_mca[] = "match_mca";
+static const char __pyx_k_mca_index[] = "mca_index";
+static const char __pyx_k_metaclass[] = "__metaclass__";
+static const char __pyx_k_pyx_state[] = "__pyx_state";
+static const char __pyx_k_reduce_ex[] = "__reduce_ex__";
+static const char __pyx_k_transpose[] = "transpose";
+static const char __pyx_k_11_08_2017[] = "11/08/2017";
+static const char __pyx_k_IndexError[] = "IndexError";
+static const char __pyx_k_MCA___init[] = "MCA.__init__";
+static const char __pyx_k_MCA___iter[] = "MCA.__iter__";
+static const char __pyx_k_Scan_index[] = "Scan.index";
+static const char __pyx_k_Scan_order[] = "Scan.order";
+static const char __pyx_k_Valid_keys[] = "\nValid keys: '";
+static const char __pyx_k_ValueError[] = "ValueError";
+static const char __pyx_k_calib_line[] = "calib_line";
+static const char __pyx_k_chann_line[] = "chann_line";
+static const char __pyx_k_dictionary[] = "dictionary";
+static const char __pyx_k_line_index[] = "line_index";
+static const char __pyx_k_pyx_result[] = "__pyx_result";
+static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__";
+static const char __pyx_k_scan_index[] = "scan_index";
+static const char __pyx_k_scan_order[] = "scan_order";
+static const char __pyx_k_specfile_2[] = "specfile";
+static const char __pyx_k_startswith[] = "startswith";
+static const char __pyx_k_MemoryError[] = "MemoryError";
+static const char __pyx_k_PickleError[] = "PickleError";
+static const char __pyx_k_Scan___init[] = "Scan.__init__";
+static const char __pyx_k_Scan_header[] = "Scan.header";
+static const char __pyx_k_Scan_labels[] = "Scan.labels";
+static const char __pyx_k_Scan_number[] = "Scan.number";
+static const char __pyx_k_calib_lines[] = "calib_lines";
+static const char __pyx_k_calibration[] = "calibration";
+static const char __pyx_k_chann_lines[] = "chann_lines";
+static const char __pyx_k_file_header[] = "file_header";
+static const char __pyx_k_is_specfile[] = "is_specfile";
+static const char __pyx_k_motor_names[] = "motor_names";
+static const char __pyx_k_scan_header[] = "scan_header";
+static const char __pyx_k_scan_number[] = "scan_number";
+static const char __pyx_k_SfNoMcaError[] = "SfNoMcaError";
+static const char __pyx_k_handle_error[] = "_handle_error";
+static const char __pyx_k_pyx_checksum[] = "__pyx_checksum";
+static const char __pyx_k_stringsource[] = "stringsource";
+static const char __pyx_k_version_info[] = "version_info";
+static const char __pyx_k_MCA___getitem[] = "MCA.__getitem__";
+static const char __pyx_k_SfErrFileOpen[] = "SfErrFileOpen";
+static const char __pyx_k_SfErrFileRead[] = "SfErrFileRead";
+static const char __pyx_k_motor_names_2[] = "_motor_names";
+static const char __pyx_k_number_of_mca[] = "number_of_mca";
+static const char __pyx_k_pyx_getbuffer[] = "__pyx_getbuffer";
+static const char __pyx_k_reduce_cython[] = "__reduce_cython__";
+static const char __pyx_k_AttributeError[] = "AttributeError";
+static const char __pyx_k_Scan_data_line[] = "Scan.data_line";
+static const char __pyx_k_SfErrFileClose[] = "SfErrFileClose";
+static const char __pyx_k_SfErrFileWrite[] = "SfErrFileWrite";
+static const char __pyx_k_SfErrLineEmpty[] = "SfErrLineEmpty";
+static const char __pyx_k_parse_channels[] = "_parse_channels";
+static const char __pyx_k_SpecFile___iter[] = "SpecFile.__iter__";
+static const char __pyx_k_View_MemoryView[] = "View.MemoryView";
+static const char __pyx_k_allocate_buffer[] = "allocate_buffer";
+static const char __pyx_k_dtype_is_object[] = "dtype_is_object";
+static const char __pyx_k_mca_header_dict[] = "mca_header_dict";
+static const char __pyx_k_motor_positions[] = "motor_positions";
+static const char __pyx_k_pyx_PickleError[] = "__pyx_PickleError";
+static const char __pyx_k_setstate_cython[] = "__setstate_cython__";
+static const char __pyx_k_SF_ERR_FILE_OPEN[] = "SF_ERR_FILE_OPEN";
+static const char __pyx_k_SF_ERR_NO_ERRORS[] = "SF_ERR_NO_ERRORS";
+static const char __pyx_k_Scan_file_header[] = "Scan.file_header";
+static const char __pyx_k_Scan_motor_names[] = "Scan.motor_names";
+static const char __pyx_k_Scan_scan_header[] = "Scan.scan_header";
+static const char __pyx_k_SfErrColNotFound[] = "SfErrColNotFound";
+static const char __pyx_k_SfErrMcaNotFound[] = "SfErrMcaNotFound";
+static const char __pyx_k_SfErrMemoryAlloc[] = "SfErrMemoryAlloc";
+static const char __pyx_k_all_calib_values[] = "all_calib_values";
+static const char __pyx_k_all_chann_values[] = "all_chann_values";
+static const char __pyx_k_file_header_dict[] = "_file_header_dict";
+static const char __pyx_k_get_error_string[] = "_get_error_string";
+static const char __pyx_k_scan_header_dict[] = "_scan_header_dict";
+static const char __pyx_k_silx_io_specfile[] = "silx.io.specfile";
+static const char __pyx_k_SfErrLineNotFound[] = "SfErrLineNotFound";
+static const char __pyx_k_SfErrScanNotFound[] = "SfErrScanNotFound";
+static const char __pyx_k_SfErrUserNotFound[] = "SfErrUserNotFound";
+static const char __pyx_k_file_header_lines[] = "_file_header_lines";
+static const char __pyx_k_mca_header_dict_2[] = "_mca_header_dict";
+static const char __pyx_k_motor_positions_2[] = "_motor_positions";
+static const char __pyx_k_parse_calibration[] = "_parse_calibration";
+static const char __pyx_k_pyx_unpickle_Enum[] = "__pyx_unpickle_Enum";
+static const char __pyx_k_scan_header_lines[] = "_scan_header_lines";
+static const char __pyx_k_SfErrLabelNotFound[] = "SfErrLabelNotFound";
+static const char __pyx_k_SfErrMotorNotFound[] = "SfErrMotorNotFound";
+static const char __pyx_k_SfNoMca_returned_1[] = "(SfNoMca returned -1)";
+static const char __pyx_k_add_or_concatenate[] = "_add_or_concatenate";
+static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback";
+static const char __pyx_k_file_header_dict_2[] = "file_header_dict";
+static const char __pyx_k_scan_header_dict_2[] = "scan_header_dict";
+static const char __pyx_k_strided_and_direct[] = "<strided and direct>";
+static const char __pyx_k_MCA__parse_channels[] = "MCA._parse_channels";
+static const char __pyx_k_SfErrHeaderNotFound[] = "SfErrHeaderNotFound";
+static const char __pyx_k_data_column_by_name[] = "data_column_by_name";
+static const char __pyx_k_string_to_char_star[] = "_string_to_char_star";
+static const char __pyx_k_Scan_mca_header_dict[] = "Scan.mca_header_dict";
+static const char __pyx_k_Scan_motor_positions[] = "Scan.motor_positions";
+static const char __pyx_k_record_exists_in_hdr[] = "record_exists_in_hdr";
+static const char __pyx_k_silx_io_specfile_pyx[] = "silx/io/specfile.pyx";
+static const char __pyx_k_strided_and_indirect[] = "<strided and indirect>";
+static const char __pyx_k_SF_ERR_SCAN_NOT_FOUND[] = "SF_ERR_SCAN_NOT_FOUND";
+static const char __pyx_k_Scan_file_header_dict[] = "Scan.file_header_dict";
+static const char __pyx_k_Scan_scan_header_dict[] = "Scan.scan_header_dict";
+static const char __pyx_k_SfErrPositionNotFound[] = "SfErrPositionNotFound";
+static const char __pyx_k_contiguous_and_direct[] = "<contiguous and direct>";
+static const char __pyx_k_one_line_calib_values[] = "one_line_calib_values";
+static const char __pyx_k_one_line_chann_values[] = "one_line_chann_values";
+static const char __pyx_k_MCA__parse_calibration[] = "MCA._parse_calibration";
+static const char __pyx_k_MemoryView_of_r_object[] = "<MemoryView of %r object>";
+static const char __pyx_k_motor_position_by_name[] = "motor_position_by_name";
+static const char __pyx_k_MemoryView_of_r_at_0x_x[] = "<MemoryView of %r at 0x%x>";
+static const char __pyx_k_contiguous_and_indirect[] = "<contiguous and indirect>";
+static const char __pyx_k_Cannot_index_with_type_s[] = "Cannot index with type '%s'";
+static const char __pyx_k_Scan_data_column_by_name[] = "Scan.data_column_by_name";
+static const char __pyx_k_Invalid_shape_in_axis_d_d[] = "Invalid shape in axis %d: %d.";
+static const char __pyx_k_Scan_record_exists_in_hdr[] = "Scan.record_exists_in_hdr";
+static const char __pyx_k_Scan_motor_position_by_name[] = "Scan.motor_position_by_name";
+static const char __pyx_k_itemsize_0_for_cython_array[] = "itemsize <= 0 for cython.array";
+static const char __pyx_k_Error_while_closing_SpecFile[] = "Error while closing SpecFile";
+static const char __pyx_k_number_and_M_the_order_eg_2_3[] = " number and M the order (eg '2.3').";
+static const char __pyx_k_unable_to_allocate_array_data[] = "unable to allocate array data.";
+static const char __pyx_k_MCA_index_must_be_in_range_0_d[] = "MCA index must be in range 0-%d";
+static const char __pyx_k_param_specfile_Parent_SpecFile[] = "\n\n :param specfile: Parent SpecFile from which this scan is extracted.\n :type specfile: :class:`SpecFile`\n :param scan_index: Unique index defining the scan in the SpecFile\n :type scan_index: int\n\n Interface to access a SpecFile scan\n\n A scan is a block of descriptive header lines followed by a 2D data array.\n\n Following three ways of accessing a scan are equivalent::\n\n sf = SpecFile(\"/path/to/specfile.dat\")\n\n # Explicit class instantiation\n scan2 = Scan(sf, scan_index=2)\n\n # 0-based index on a SpecFile object\n scan2 = sf[2]\n\n # Using a \"n.m\" key (scan number starting with 1, scan order)\n scan2 = sf[\"3.1\"]\n ";
+static const char __pyx_k_strided_and_direct_or_indirect[] = "<strided and direct or indirect>";
+static const char __pyx_k_Base_exception_inherited_by_all[] = "Base exception inherited by all exceptions raised when a\n C function from the legacy SpecFile library returns an error\n code.\n ";
+static const char __pyx_k_Scan_index_must_be_in_range_0_d[] = "Scan index must be in range 0-%d";
+static const char __pyx_k_The_scan_identification_key_can[] = "The scan identification key can be an integer representing ";
+static const char __pyx_k_This_module_is_a_cython_binding[] = "\nThis module is a cython binding to wrap the C SpecFile library, to access\nSpecFile data within a python program.\n\nDocumentation for the original C library SpecFile can be found on the ESRF\nwebsite:\n`The manual for the SpecFile Library <http://www.esrf.eu/files/live/sites/www/files/Instrumentation/software/beamline-control/BLISS/documentation/SpecFileManual.pdf>`_\n\nExamples\n========\n\nStart by importing :class:`SpecFile` and instantiate it:\n\n.. code-block:: python\n\n from silx.io.specfile import SpecFile\n\n sf = SpecFile(\"test.dat\")\n\nA :class:`SpecFile` instance can be accessed like a dictionary to obtain a\n:class:`Scan` instance.\n\nIf the key is a string representing two values\nseparated by a dot (e.g. ``\"1.2\"``), they will be treated as the scan number\n(``#S`` header line) and the scan order::\n\n # get second occurrence of scan \"#S 1\"\n myscan = sf[\"1.2\"]\n\n # access scan data as a numpy array\n nlines, ncolumns = myscan.data.shape\n\nIf the key is an integer, it will be treated as a 0-based index::\n\n first_scan = sf[0]\n second_scan = sf[1]\n\nIt is also possible to browse through all scans using :class:`SpecFile` as\nan iterator::\n\n for scan in sf:\n print(scan.scan_header_dict['S'])\n\nMCA spectra can be selectively loaded using an instance of :class:`MCA`\nprovided by :class:`Scan`::\n\n # Only one MCA spectrum is loaded in memory\n second_mca = first_scan.mca[1]\n\n # Iterating trough all MCA spectra in a scan:\n for mca_data in first_scan.mca:\n print(sum(mca_data))\n\nClasses\n=======\n\n- :class:`SpecFile`\n- :class:`Scan`\n- :class:`MCA`\n\nExceptions\n==========\n\n- :class:`SfError`\n- :class:`SfErrMemoryAlloc`\n- :class:`SfErrFileOpen`\n- :class:`SfErrFileClose`\n- :class:`SfErrFileRead`\n- :class:`SfErrFileWrite`\n- :class:`SfErrLineNotFound`\n- :class:`SfErrScanNotFound`\n- :class:`SfErrHeaderNotFound`\n- :class:`SfErrLabelNotFound`\n- :class:`SfErrMotorNotFound`""\n- :class:`SfErrPositionNotFound`\n- :class:`SfErrLineEmpty`\n- :class:`SfErrUserNotFound`\n- :class:`SfErrColNotFound`\n- :class:`SfErrMcaNotFound`\n\n";
+static const char __pyx_k_param_scan_Parent_Scan_instance[] = "\n\n :param scan: Parent Scan instance\n :type scan: :class:`Scan`\n\n :var calibration: MCA calibration :math:`(a, b, c)` (as in\n :math:`a + b x + c x\302\262`) from ``#@CALIB`` scan header.\n :type calibration: list of 3 floats, default ``[0., 1., 0.]``\n :var channels: MCA channels list from ``#@CHANN`` scan header.\n In the absence of a ``#@CHANN`` header, this attribute is a list\n ``[0, \342\200\246, N-1]`` where ``N`` is the length of the first spectrum.\n In the absence of MCA spectra, this attribute defaults to ``None``.\n :type channels: list of int\n\n This class provides access to Multi-Channel Analysis data. A :class:`MCA`\n instance can be indexed to access 1D numpy arrays representing single\n MCA\302\240spectra.\n\n To create a :class:`MCA` instance, you must provide a parent :class:`Scan`\n instance, which in turn will provide a reference to the original\n :class:`SpecFile` instance::\n\n sf = SpecFile(\"/path/to/specfile.dat\")\n scan2 = Scan(sf, scan_index=2)\n mcas_in_scan2 = MCA(scan2)\n for i in len(mcas_in_scan2):\n mca_data = mcas_in_scan2[i]\n ... # do some something with mca_data (1D numpy array)\n\n A more pythonic way to do the same work, without having to explicitly\n instantiate ``scan`` and ``mcas_in_scan``, would be::\n\n sf = SpecFile(\"specfilename.dat\")\n # scan2 from previous example can be referred to as sf[2]\n # mcas_in_scan2 from previous example can be referred to as scan2.mca\n for mca_data in sf[2].mca:\n ... # do some something with mca_data (1D numpy array)\n\n ";
+static const char __pyx_k_Buffer_view_does_not_expose_stri[] = "Buffer view does not expose strides";
+static const char __pyx_k_Can_only_create_a_buffer_that_is[] = "Can only create a buffer that is contiguous in memory.";
+static const char __pyx_k_Cannot_assign_to_read_only_memor[] = "Cannot assign to read-only memoryview";
+static const char __pyx_k_Cannot_create_writable_memory_vi[] = "Cannot create writable memory view from read-only memoryview";
+static const char __pyx_k_Cannot_get_data_column_s_in_scan[] = "Cannot get data column %s in scan %d.%d";
+static const char __pyx_k_Custom_exception_raised_when_SfN[] = "Custom exception raised when ``SfNoMca()`` returns ``-1``\n ";
+static const char __pyx_k_Empty_shape_tuple_for_cython_arr[] = "Empty shape tuple for cython.array";
+static const char __pyx_k_Failed_to_retrieve_number_of_MCA[] = "Failed to retrieve number of MCA ";
+static const char __pyx_k_Incompatible_checksums_s_vs_0xb0[] = "Incompatible checksums (%s vs 0xb068931 = (name))";
+static const char __pyx_k_Indirect_dimensions_not_supporte[] = "Indirect dimensions not supported";
+static const char __pyx_k_Invalid_mode_expected_c_or_fortr[] = "Invalid mode, expected 'c' or 'fortran', got %s";
+static const char __pyx_k_MCA_calibration_line_CALIB_not_f[] = "MCA calibration line (@CALIB) not found";
+static const char __pyx_k_MCA_index_should_be_an_integer_s[] = "MCA index should be an integer (%s provided)";
+static const char __pyx_k_No_MCA_spectrum_found_in_this_sc[] = "No MCA spectrum found in this scan";
+static const char __pyx_k_Out_of_bounds_on_buffer_access_a[] = "Out of bounds on buffer access (axis %d)";
+static const char __pyx_k_Parameter_value_must_be_a_string[] = "Parameter value must be a string.";
+static const char __pyx_k_SfDataColByName_returned_1_witho[] = "SfDataColByName returned -1 without an error. Assuming aborted scan.";
+static const char __pyx_k_SfData_returned_1_without_an_err[] = "SfData returned -1 without an error. Assuming aborted scan.";
+static const char __pyx_k_Unable_to_convert_item_to_object[] = "Unable to convert item to object";
+static const char __pyx_k_Unable_to_parse_file_header_line[] = "Unable to parse file header line ";
+static const char __pyx_k_Unable_to_parse_scan_header_line[] = "Unable to parse scan header line ";
+static const char __pyx_k_got_differing_extents_in_dimensi[] = "got differing extents in dimension %d (got %d and %d)";
+static const char __pyx_k_no_default___reduce___due_to_non[] = "no default __reduce__ due to non-trivial __cinit__";
+static const char __pyx_k_the_unique_scan_index_or_a_strin[] = "the unique scan index or a string 'N.M' with N being the scan";
+static const char __pyx_k_unable_to_allocate_shape_and_str[] = "unable to allocate shape and strides.";
static PyObject *__pyx_kp_b_;
static PyObject *__pyx_kp_s_;
static PyObject *__pyx_kp_s_11_08_2017;
static PyObject *__pyx_kp_s_2;
-static PyObject *__pyx_kp_s_3;
+static PyObject *__pyx_n_s_ASCII;
static PyObject *__pyx_n_s_AttributeError;
static PyObject *__pyx_kp_s_Base_exception_inherited_by_all;
+static PyObject *__pyx_kp_s_Buffer_view_does_not_expose_stri;
static PyObject *__pyx_n_s_CALIB;
static PyObject *__pyx_n_s_CHANN;
+static PyObject *__pyx_kp_s_Can_only_create_a_buffer_that_is;
+static PyObject *__pyx_kp_s_Cannot_assign_to_read_only_memor;
+static PyObject *__pyx_kp_s_Cannot_create_writable_memory_vi;
static PyObject *__pyx_kp_s_Cannot_get_data_column_s_in_scan;
+static PyObject *__pyx_kp_s_Cannot_index_with_type_s;
static PyObject *__pyx_kp_s_Custom_exception_raised_when_SfN;
static PyObject *__pyx_n_s_ERRORS;
+static PyObject *__pyx_n_s_Ellipsis;
+static PyObject *__pyx_kp_s_Empty_shape_tuple_for_cython_arr;
static PyObject *__pyx_kp_s_Error_while_closing_SpecFile;
-static PyObject *__pyx_n_s_Exception;
static PyObject *__pyx_kp_b_F;
static PyObject *__pyx_kp_s_Failed_to_retrieve_number_of_MCA;
-static PyObject *__pyx_kp_u_Format_string_allocated_too_shor;
-static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2;
static PyObject *__pyx_n_s_IOError;
+static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0xb0;
static PyObject *__pyx_n_s_IndexError;
+static PyObject *__pyx_kp_s_Indirect_dimensions_not_supporte;
+static PyObject *__pyx_kp_s_Invalid_mode_expected_c_or_fortr;
+static PyObject *__pyx_kp_s_Invalid_shape_in_axis_d_d;
static PyObject *__pyx_n_s_KeyError;
static PyObject *__pyx_n_s_L;
static PyObject *__pyx_n_s_L_header;
@@ -1717,11 +2385,14 @@ static PyObject *__pyx_kp_s_MCA_index_must_be_in_range_0_d;
static PyObject *__pyx_kp_s_MCA_index_should_be_an_integer_s;
static PyObject *__pyx_n_s_MIT;
static PyObject *__pyx_n_s_MemoryError;
+static PyObject *__pyx_kp_s_MemoryView_of_r_at_0x_x;
+static PyObject *__pyx_kp_s_MemoryView_of_r_object;
static PyObject *__pyx_kp_s_No_MCA_spectrum_found_in_this_sc;
-static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor;
+static PyObject *__pyx_n_b_O;
+static PyObject *__pyx_kp_s_Out_of_bounds_on_buffer_access_a;
static PyObject *__pyx_kp_s_P_Knobel;
static PyObject *__pyx_kp_s_Parameter_value_must_be_a_string;
-static PyObject *__pyx_n_s_RuntimeError;
+static PyObject *__pyx_n_s_PickleError;
static PyObject *__pyx_kp_b_S;
static PyObject *__pyx_n_s_SF_ERR_FILE_OPEN;
static PyObject *__pyx_n_s_SF_ERR_NO_ERRORS;
@@ -1747,6 +2418,8 @@ static PyObject *__pyx_n_s_Scan_order;
static PyObject *__pyx_n_s_Scan_record_exists_in_hdr;
static PyObject *__pyx_n_s_Scan_scan_header;
static PyObject *__pyx_n_s_Scan_scan_header_dict;
+static PyObject *__pyx_kp_s_SfDataColByName_returned_1_witho;
+static PyObject *__pyx_kp_s_SfData_returned_1_without_an_err;
static PyObject *__pyx_n_s_SfErrColNotFound;
static PyObject *__pyx_n_s_SfErrFileClose;
static PyObject *__pyx_n_s_SfErrFileOpen;
@@ -1768,22 +2441,30 @@ static PyObject *__pyx_kp_s_SfNoMca_returned_1;
static PyObject *__pyx_n_s_SpecFile___iter;
static PyObject *__pyx_kp_s_The_scan_identification_key_can;
static PyObject *__pyx_n_s_TypeError;
+static PyObject *__pyx_kp_s_Unable_to_convert_item_to_object;
static PyObject *__pyx_kp_s_Unable_to_parse_file_header_line;
static PyObject *__pyx_kp_s_Unable_to_parse_scan_header_line;
static PyObject *__pyx_kp_s_Valid_keys;
static PyObject *__pyx_n_s_ValueError;
-static PyObject *__pyx_kp_s__14;
+static PyObject *__pyx_n_s_View_MemoryView;
+static PyObject *__pyx_kp_s__15;
static PyObject *__pyx_kp_s__28;
+static PyObject *__pyx_kp_u__28;
static PyObject *__pyx_kp_s__30;
static PyObject *__pyx_kp_s__31;
-static PyObject *__pyx_kp_s__7;
+static PyObject *__pyx_kp_s__8;
static PyObject *__pyx_n_s_add_or_concatenate;
static PyObject *__pyx_n_s_all_calib_values;
static PyObject *__pyx_n_s_all_chann_values;
+static PyObject *__pyx_n_s_allocate_buffer;
static PyObject *__pyx_n_s_append;
static PyObject *__pyx_n_s_args;
+static PyObject *__pyx_n_s_asarray;
static PyObject *__pyx_n_s_ascii;
static PyObject *__pyx_n_s_authors;
+static PyObject *__pyx_n_s_base;
+static PyObject *__pyx_n_s_c;
+static PyObject *__pyx_n_u_c;
static PyObject *__pyx_n_s_calib_line;
static PyObject *__pyx_n_s_calib_lines;
static PyObject *__pyx_n_s_calibration;
@@ -1791,22 +2472,29 @@ static PyObject *__pyx_n_s_chann_line;
static PyObject *__pyx_n_s_chann_lines;
static PyObject *__pyx_n_s_channels;
static PyObject *__pyx_n_s_chunk;
+static PyObject *__pyx_n_s_class;
+static PyObject *__pyx_n_s_cline_in_traceback;
static PyObject *__pyx_n_s_close;
-static PyObject *__pyx_kp_u_d_d;
+static PyObject *__pyx_kp_s_contiguous_and_direct;
+static PyObject *__pyx_kp_s_contiguous_and_indirect;
+static PyObject *__pyx_n_u_d;
static PyObject *__pyx_n_s_data;
static PyObject *__pyx_n_s_data_2;
static PyObject *__pyx_n_s_data_column_by_name;
static PyObject *__pyx_n_s_data_line;
static PyObject *__pyx_n_s_date;
static PyObject *__pyx_n_s_decode;
+static PyObject *__pyx_n_s_dict;
static PyObject *__pyx_n_s_dictionary;
static PyObject *__pyx_n_s_doc;
static PyObject *__pyx_n_s_double;
static PyObject *__pyx_n_s_dtype;
+static PyObject *__pyx_n_s_dtype_is_object;
static PyObject *__pyx_n_s_empty;
static PyObject *__pyx_n_s_encode;
static PyObject *__pyx_n_s_enter;
static PyObject *__pyx_n_s_enumerate;
+static PyObject *__pyx_n_s_error;
static PyObject *__pyx_n_s_exit;
static PyObject *__pyx_n_s_f;
static PyObject *__pyx_n_s_file_header;
@@ -1814,10 +2502,16 @@ static PyObject *__pyx_n_s_file_header_dict;
static PyObject *__pyx_n_s_file_header_dict_2;
static PyObject *__pyx_n_s_file_header_lines;
static PyObject *__pyx_n_s_filename;
+static PyObject *__pyx_n_s_flags;
+static PyObject *__pyx_n_s_format;
+static PyObject *__pyx_n_s_fortran;
+static PyObject *__pyx_n_u_fortran;
static PyObject *__pyx_n_s_getLogger;
static PyObject *__pyx_n_s_get_error_string;
static PyObject *__pyx_n_s_get_mca;
static PyObject *__pyx_n_s_getitem;
+static PyObject *__pyx_n_s_getstate;
+static PyObject *__pyx_kp_s_got_differing_extents_in_dimensi;
static PyObject *__pyx_n_s_group;
static PyObject *__pyx_n_s_handle_error;
static PyObject *__pyx_n_s_header;
@@ -1825,6 +2519,7 @@ static PyObject *__pyx_n_s_header_2;
static PyObject *__pyx_n_s_hkey;
static PyObject *__pyx_n_s_hvalue;
static PyObject *__pyx_n_s_i;
+static PyObject *__pyx_n_s_id;
static PyObject *__pyx_n_s_import;
static PyObject *__pyx_n_s_increment;
static PyObject *__pyx_n_s_index;
@@ -1832,6 +2527,8 @@ static PyObject *__pyx_n_s_index_2;
static PyObject *__pyx_n_s_init;
static PyObject *__pyx_n_s_is_specfile;
static PyObject *__pyx_n_s_isfile;
+static PyObject *__pyx_n_s_itemsize;
+static PyObject *__pyx_kp_s_itemsize_0_for_cython_array;
static PyObject *__pyx_n_s_iter;
static PyObject *__pyx_n_s_join;
static PyObject *__pyx_n_s_key;
@@ -1857,7 +2554,9 @@ static PyObject *__pyx_n_s_mca_2;
static PyObject *__pyx_n_s_mca_header_dict;
static PyObject *__pyx_n_s_mca_header_dict_2;
static PyObject *__pyx_n_s_mca_index;
+static PyObject *__pyx_n_s_memview;
static PyObject *__pyx_n_s_metaclass;
+static PyObject *__pyx_n_s_mode;
static PyObject *__pyx_n_s_module;
static PyObject *__pyx_n_s_motor_names;
static PyObject *__pyx_n_s_motor_names_2;
@@ -1867,13 +2566,15 @@ static PyObject *__pyx_n_s_motor_positions_2;
static PyObject *__pyx_n_s_msg;
static PyObject *__pyx_n_s_name;
static PyObject *__pyx_n_s_name_2;
-static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous;
-static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou;
+static PyObject *__pyx_n_s_ndim;
+static PyObject *__pyx_n_s_new;
+static PyObject *__pyx_kp_s_no_default___reduce___due_to_non;
static PyObject *__pyx_n_s_number;
static PyObject *__pyx_n_s_number_2;
static PyObject *__pyx_kp_s_number_and_M_the_order_eg_2_3;
static PyObject *__pyx_n_s_number_of_mca;
static PyObject *__pyx_n_s_numpy;
+static PyObject *__pyx_n_s_obj;
static PyObject *__pyx_n_s_object;
static PyObject *__pyx_n_s_one_line_calib_values;
static PyObject *__pyx_n_s_one_line_chann_values;
@@ -1882,13 +2583,23 @@ static PyObject *__pyx_n_s_order;
static PyObject *__pyx_n_s_order_2;
static PyObject *__pyx_n_s_os;
static PyObject *__pyx_n_s_os_path;
+static PyObject *__pyx_n_s_pack;
static PyObject *__pyx_kp_s_param_scan_Parent_Scan_instance;
static PyObject *__pyx_kp_s_param_specfile_Parent_SpecFile;
static PyObject *__pyx_n_s_parse_calibration;
static PyObject *__pyx_n_s_parse_channels;
static PyObject *__pyx_n_s_path;
+static PyObject *__pyx_n_s_pickle;
static PyObject *__pyx_n_s_prepare;
static PyObject *__pyx_n_s_property;
+static PyObject *__pyx_n_s_pyx_PickleError;
+static PyObject *__pyx_n_s_pyx_checksum;
+static PyObject *__pyx_n_s_pyx_getbuffer;
+static PyObject *__pyx_n_s_pyx_result;
+static PyObject *__pyx_n_s_pyx_state;
+static PyObject *__pyx_n_s_pyx_type;
+static PyObject *__pyx_n_s_pyx_unpickle_Enum;
+static PyObject *__pyx_n_s_pyx_vtable;
static PyObject *__pyx_n_s_qualname;
static PyObject *__pyx_n_s_range;
static PyObject *__pyx_n_s_rb;
@@ -1896,6 +2607,9 @@ static PyObject *__pyx_n_s_re;
static PyObject *__pyx_n_s_read;
static PyObject *__pyx_n_s_record;
static PyObject *__pyx_n_s_record_exists_in_hdr;
+static PyObject *__pyx_n_s_reduce;
+static PyObject *__pyx_n_s_reduce_cython;
+static PyObject *__pyx_n_s_reduce_ex;
static PyObject *__pyx_n_s_ret;
static PyObject *__pyx_n_s_scan;
static PyObject *__pyx_n_s_scan_2;
@@ -1909,31 +2623,151 @@ static PyObject *__pyx_n_s_scan_order;
static PyObject *__pyx_n_s_search;
static PyObject *__pyx_n_s_self;
static PyObject *__pyx_n_s_send;
+static PyObject *__pyx_n_s_setstate;
+static PyObject *__pyx_n_s_setstate_cython;
static PyObject *__pyx_n_s_shape;
static PyObject *__pyx_n_s_silx_io_specfile;
+static PyObject *__pyx_kp_s_silx_io_specfile_pyx;
+static PyObject *__pyx_n_s_size;
static PyObject *__pyx_n_s_specfile;
static PyObject *__pyx_n_s_specfile_2;
static PyObject *__pyx_n_s_split;
static PyObject *__pyx_n_s_start;
static PyObject *__pyx_n_s_startswith;
+static PyObject *__pyx_n_s_step;
static PyObject *__pyx_n_s_stop;
+static PyObject *__pyx_kp_s_strided_and_direct;
+static PyObject *__pyx_kp_s_strided_and_direct_or_indirect;
+static PyObject *__pyx_kp_s_strided_and_indirect;
static PyObject *__pyx_n_s_string;
static PyObject *__pyx_n_s_string_to_char_star;
+static PyObject *__pyx_kp_s_stringsource;
static PyObject *__pyx_n_s_strip;
+static PyObject *__pyx_n_s_struct;
static PyObject *__pyx_n_s_sub;
static PyObject *__pyx_n_s_sys;
static PyObject *__pyx_n_s_test;
static PyObject *__pyx_kp_s_the_unique_scan_index_or_a_strin;
static PyObject *__pyx_n_s_throw;
static PyObject *__pyx_n_s_transpose;
-static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd;
-static PyObject *__pyx_kp_s_users_knobel_git_silx_silx_io_s;
+static PyObject *__pyx_kp_s_unable_to_allocate_array_data;
+static PyObject *__pyx_kp_s_unable_to_allocate_shape_and_str;
+static PyObject *__pyx_n_s_unpack;
+static PyObject *__pyx_n_s_update;
static PyObject *__pyx_n_s_value;
-static PyObject *__pyx_n_s_version;
static PyObject *__pyx_n_s_version_info;
static PyObject *__pyx_kp_s_w;
static PyObject *__pyx_kp_s_w_2;
static PyObject *__pyx_n_s_warning;
+static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_scan); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_2_parse_channels(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_4_parse_calibration(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_6__len__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_8__getitem__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_10__iter__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile__add_or_concatenate(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dictionary, PyObject *__pyx_v_key, PyObject *__pyx_v_value); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_specfile, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_2index(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_4number(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_6order(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_8header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_10scan_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_12file_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_14scan_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_16mca_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_18file_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_20labels(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_22data(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_24mca(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_26motor_names(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_28motor_positions(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_30record_exists_in_hdr(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_record); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_32data_line(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_line_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_34data_column_by_name(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_label); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_36motor_position_by_name(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_name); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_2_string_to_char_star(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_string_); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_4is_specfile(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_filename); /* proto */
+static int __pyx_pf_4silx_2io_8specfile_8SpecFile___cinit__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_filename); /* proto */
+static int __pyx_pf_4silx_2io_8specfile_8SpecFile_2__init__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_filename); /* proto */
+static void __pyx_pf_4silx_2io_8specfile_8SpecFile_4__dealloc__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_6close(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
+static Py_ssize_t __pyx_pf_4silx_2io_8specfile_8SpecFile_8__len__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_10__iter__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_13__getitem__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_15keys(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
+static int __pyx_pf_4silx_2io_8specfile_8SpecFile_17__contains__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_19_get_error_string(CYTHON_UNUSED struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_error_code); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_21_handle_error(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_error_code); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_23index(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_number, PyObject *__pyx_v_scan_order); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_25number(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_27order(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_29_list(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_31list(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_33data(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_35data_column_by_name(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_label); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_37scan_header(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_39file_header(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_41columns(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_43command(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_45date(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_47labels(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_49motor_names(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_51motor_positions(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_53motor_position_by_name(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_name); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_55number_of_mca(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_57mca_calibration(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_59get_mca(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_mca_index); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_61__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_63__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
+static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array___cinit__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_shape, Py_ssize_t __pyx_v_itemsize, PyObject *__pyx_v_format, PyObject *__pyx_v_mode, int __pyx_v_allocate_buffer); /* proto */
+static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_2__getbuffer__(struct __pyx_array_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
+static void __pyx_array___pyx_pf_15View_dot_MemoryView_5array_4__dealloc__(struct __pyx_array_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_15View_dot_MemoryView_5array_7memview___get__(struct __pyx_array_obj *__pyx_v_self); /* proto */
+static Py_ssize_t __pyx_array___pyx_pf_15View_dot_MemoryView_5array_6__len__(struct __pyx_array_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_8__getattr__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_attr); /* proto */
+static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_10__getitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item); /* proto */
+static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_12__setitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value); /* proto */
+static PyObject *__pyx_pf___pyx_array___reduce_cython__(CYTHON_UNUSED struct __pyx_array_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf___pyx_array_2__setstate_cython__(CYTHON_UNUSED struct __pyx_array_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
+static int __pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum___init__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v_name); /* proto */
+static PyObject *__pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum_2__repr__(struct __pyx_MemviewEnum_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf___pyx_MemviewEnum___reduce_cython__(struct __pyx_MemviewEnum_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf___pyx_MemviewEnum_2__setstate_cython__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
+static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj, int __pyx_v_flags, int __pyx_v_dtype_is_object); /* proto */
+static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__dealloc__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_4__getitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index); /* proto */
+static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_6__setitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto */
+static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbuffer__(struct __pyx_memoryview_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
+static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_1T___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4base___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_5shape___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_7strides___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_10suboffsets___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4ndim___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_8itemsize___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_6nbytes___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4size___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static Py_ssize_t __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_10__len__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_12__repr__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_14__str__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_16is_c_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_18is_f_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_20copy(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_22copy_fortran(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf___pyx_memoryview___reduce_cython__(CYTHON_UNUSED struct __pyx_memoryview_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf___pyx_memoryview_2__setstate_cython__(CYTHON_UNUSED struct __pyx_memoryview_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
+static void __pyx_memoryviewslice___pyx_pf_15View_dot_MemoryView_16_memoryviewslice___dealloc__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf_15View_dot_MemoryView_16_memoryviewslice_4base___get__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf___pyx_memoryviewslice___reduce_cython__(CYTHON_UNUSED struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */
+static PyObject *__pyx_pf___pyx_memoryviewslice_2__setstate_cython__(CYTHON_UNUSED struct __pyx_memoryviewslice_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
+static PyObject *__pyx_pf_15View_dot_MemoryView___pyx_unpickle_Enum(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
+static PyObject *__pyx_tp_new_4silx_2io_8specfile_SpecFile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
+static PyObject *__pyx_tp_new_4silx_2io_8specfile___pyx_scope_struct____iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
+static PyObject *__pyx_tp_new_4silx_2io_8specfile___pyx_scope_struct_1___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
+static PyObject *__pyx_tp_new_array(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
+static PyObject *__pyx_tp_new_Enum(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
+static PyObject *__pyx_tp_new_memoryview(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
+static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_float_0_;
static PyObject *__pyx_float_1_;
static PyObject *__pyx_int_0;
@@ -1953,24 +2787,27 @@ static PyObject *__pyx_int_13;
static PyObject *__pyx_int_14;
static PyObject *__pyx_int_15;
static PyObject *__pyx_int_2500;
+static PyObject *__pyx_int_184977713;
static PyObject *__pyx_int_neg_1;
static PyObject *__pyx_tuple__2;
static PyObject *__pyx_tuple__3;
static PyObject *__pyx_tuple__4;
-static PyObject *__pyx_tuple__5;
static PyObject *__pyx_tuple__6;
-static PyObject *__pyx_tuple__8;
+static PyObject *__pyx_tuple__7;
static PyObject *__pyx_tuple__9;
-static PyObject *__pyx_slice__19;
+static PyObject *__pyx_slice__20;
+static PyObject *__pyx_slice__52;
+static PyObject *__pyx_slice__53;
+static PyObject *__pyx_slice__54;
static PyObject *__pyx_tuple__10;
static PyObject *__pyx_tuple__11;
static PyObject *__pyx_tuple__12;
static PyObject *__pyx_tuple__13;
-static PyObject *__pyx_tuple__15;
+static PyObject *__pyx_tuple__14;
static PyObject *__pyx_tuple__16;
static PyObject *__pyx_tuple__17;
static PyObject *__pyx_tuple__18;
-static PyObject *__pyx_tuple__20;
+static PyObject *__pyx_tuple__19;
static PyObject *__pyx_tuple__21;
static PyObject *__pyx_tuple__22;
static PyObject *__pyx_tuple__23;
@@ -1979,6 +2816,7 @@ static PyObject *__pyx_tuple__25;
static PyObject *__pyx_tuple__26;
static PyObject *__pyx_tuple__27;
static PyObject *__pyx_tuple__29;
+static PyObject *__pyx_tuple__32;
static PyObject *__pyx_tuple__33;
static PyObject *__pyx_tuple__34;
static PyObject *__pyx_tuple__35;
@@ -1987,63 +2825,88 @@ static PyObject *__pyx_tuple__37;
static PyObject *__pyx_tuple__38;
static PyObject *__pyx_tuple__39;
static PyObject *__pyx_tuple__40;
+static PyObject *__pyx_tuple__41;
static PyObject *__pyx_tuple__42;
+static PyObject *__pyx_tuple__43;
static PyObject *__pyx_tuple__44;
+static PyObject *__pyx_tuple__45;
static PyObject *__pyx_tuple__46;
+static PyObject *__pyx_tuple__47;
static PyObject *__pyx_tuple__48;
+static PyObject *__pyx_tuple__49;
static PyObject *__pyx_tuple__50;
-static PyObject *__pyx_tuple__52;
-static PyObject *__pyx_tuple__54;
+static PyObject *__pyx_tuple__51;
+static PyObject *__pyx_tuple__55;
static PyObject *__pyx_tuple__56;
+static PyObject *__pyx_tuple__57;
static PyObject *__pyx_tuple__58;
-static PyObject *__pyx_tuple__60;
-static PyObject *__pyx_tuple__62;
-static PyObject *__pyx_tuple__64;
-static PyObject *__pyx_tuple__66;
-static PyObject *__pyx_tuple__68;
+static PyObject *__pyx_tuple__59;
+static PyObject *__pyx_tuple__61;
+static PyObject *__pyx_tuple__63;
+static PyObject *__pyx_tuple__65;
+static PyObject *__pyx_tuple__67;
+static PyObject *__pyx_tuple__69;
static PyObject *__pyx_tuple__70;
static PyObject *__pyx_tuple__72;
-static PyObject *__pyx_tuple__74;
-static PyObject *__pyx_tuple__76;
-static PyObject *__pyx_tuple__78;
-static PyObject *__pyx_tuple__80;
-static PyObject *__pyx_tuple__82;
-static PyObject *__pyx_tuple__84;
-static PyObject *__pyx_tuple__86;
-static PyObject *__pyx_tuple__88;
-static PyObject *__pyx_tuple__90;
-static PyObject *__pyx_tuple__92;
-static PyObject *__pyx_tuple__94;
-static PyObject *__pyx_codeobj__41;
-static PyObject *__pyx_codeobj__43;
-static PyObject *__pyx_codeobj__45;
-static PyObject *__pyx_codeobj__47;
-static PyObject *__pyx_codeobj__49;
-static PyObject *__pyx_codeobj__51;
-static PyObject *__pyx_codeobj__53;
-static PyObject *__pyx_codeobj__55;
-static PyObject *__pyx_codeobj__57;
-static PyObject *__pyx_codeobj__59;
-static PyObject *__pyx_codeobj__61;
-static PyObject *__pyx_codeobj__63;
-static PyObject *__pyx_codeobj__65;
-static PyObject *__pyx_codeobj__67;
-static PyObject *__pyx_codeobj__69;
+static PyObject *__pyx_tuple__73;
+static PyObject *__pyx_tuple__75;
+static PyObject *__pyx_tuple__77;
+static PyObject *__pyx_tuple__79;
+static PyObject *__pyx_tuple__81;
+static PyObject *__pyx_tuple__83;
+static PyObject *__pyx_tuple__85;
+static PyObject *__pyx_tuple__87;
+static PyObject *__pyx_tuple__89;
+static PyObject *__pyx_tuple__91;
+static PyObject *__pyx_tuple__93;
+static PyObject *__pyx_tuple__95;
+static PyObject *__pyx_tuple__97;
+static PyObject *__pyx_tuple__99;
+static PyObject *__pyx_codeobj__5;
+static PyObject *__pyx_tuple__101;
+static PyObject *__pyx_tuple__103;
+static PyObject *__pyx_tuple__105;
+static PyObject *__pyx_tuple__107;
+static PyObject *__pyx_tuple__109;
+static PyObject *__pyx_tuple__111;
+static PyObject *__pyx_tuple__113;
+static PyObject *__pyx_tuple__115;
+static PyObject *__pyx_tuple__116;
+static PyObject *__pyx_tuple__117;
+static PyObject *__pyx_tuple__118;
+static PyObject *__pyx_tuple__119;
+static PyObject *__pyx_tuple__120;
+static PyObject *__pyx_codeobj__60;
+static PyObject *__pyx_codeobj__62;
+static PyObject *__pyx_codeobj__64;
+static PyObject *__pyx_codeobj__66;
+static PyObject *__pyx_codeobj__68;
static PyObject *__pyx_codeobj__71;
-static PyObject *__pyx_codeobj__73;
-static PyObject *__pyx_codeobj__75;
-static PyObject *__pyx_codeobj__77;
-static PyObject *__pyx_codeobj__79;
-static PyObject *__pyx_codeobj__81;
-static PyObject *__pyx_codeobj__83;
-static PyObject *__pyx_codeobj__85;
-static PyObject *__pyx_codeobj__87;
-static PyObject *__pyx_codeobj__89;
-static PyObject *__pyx_codeobj__91;
-static PyObject *__pyx_codeobj__93;
-static PyObject *__pyx_codeobj__95;
-
-/* "silx/io/specfile.pyx":233
+static PyObject *__pyx_codeobj__74;
+static PyObject *__pyx_codeobj__76;
+static PyObject *__pyx_codeobj__78;
+static PyObject *__pyx_codeobj__80;
+static PyObject *__pyx_codeobj__82;
+static PyObject *__pyx_codeobj__84;
+static PyObject *__pyx_codeobj__86;
+static PyObject *__pyx_codeobj__88;
+static PyObject *__pyx_codeobj__90;
+static PyObject *__pyx_codeobj__92;
+static PyObject *__pyx_codeobj__94;
+static PyObject *__pyx_codeobj__96;
+static PyObject *__pyx_codeobj__98;
+static PyObject *__pyx_codeobj__100;
+static PyObject *__pyx_codeobj__102;
+static PyObject *__pyx_codeobj__104;
+static PyObject *__pyx_codeobj__106;
+static PyObject *__pyx_codeobj__108;
+static PyObject *__pyx_codeobj__110;
+static PyObject *__pyx_codeobj__112;
+static PyObject *__pyx_codeobj__114;
+static PyObject *__pyx_codeobj__121;
+/* Late includes */
+
+/* "silx/io/specfile.pyx":219
*
* """
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@@ -2058,9 +2921,6 @@ static PyMethodDef __pyx_mdef_4silx_2io_8specfile_3MCA_1__init__ = {"__init__",
static PyObject *__pyx_pw_4silx_2io_8specfile_3MCA_1__init__(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
PyObject *__pyx_v_self = 0;
PyObject *__pyx_v_scan = 0;
- int __pyx_lineno = 0;
- const char *__pyx_filename = NULL;
- int __pyx_clineno = 0;
PyObject *__pyx_r = 0;
__Pyx_RefNannyDeclarations
__Pyx_RefNannySetupContext("__init__ (wrapper)", 0);
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const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
switch (pos_args) {
case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
+ CYTHON_FALLTHROUGH;
case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
+ CYTHON_FALLTHROUGH;
case 0: break;
default: goto __pyx_L5_argtuple_error;
}
kw_args = PyDict_Size(__pyx_kwds);
switch (pos_args) {
case 0:
- if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_self)) != 0)) kw_args--;
+ if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_self)) != 0)) kw_args--;
else goto __pyx_L5_argtuple_error;
+ CYTHON_FALLTHROUGH;
case 1:
- if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_scan)) != 0)) kw_args--;
+ if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_scan)) != 0)) kw_args--;
else {
- __Pyx_RaiseArgtupleInvalid("__init__", 1, 2, 2, 1); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 233; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+ __Pyx_RaiseArgtupleInvalid("__init__", 1, 2, 2, 1); __PYX_ERR(0, 219, __pyx_L3_error)
}
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if (unlikely(kw_args > 0)) {
- if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 233; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
+ if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) __PYX_ERR(0, 219, __pyx_L3_error)
}
} else if (PyTuple_GET_SIZE(__pyx_args) != 2) {
goto __pyx_L5_argtuple_error;
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goto __pyx_L4_argument_unpacking_done;
__pyx_L5_argtuple_error:;
- __Pyx_RaiseArgtupleInvalid("__init__", 1, 2, 2, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 233; __pyx_clineno = __LINE__; goto __pyx_L3_error;}
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__Pyx_AddTraceback("silx.io.specfile.MCA.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
__Pyx_RefNannyFinishContext();
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PyObject *__pyx_t_2 = NULL;
PyObject *__pyx_t_3 = NULL;
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- const char *__pyx_filename = NULL;
- int __pyx_clineno = 0;
__Pyx_RefNannySetupContext("__init__", 0);
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- /* "silx/io/specfile.pyx":237
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*
* # Header dict
* self._header = scan.mca_header_dict # <<<<<<<<<<<<<<
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* self.calibration = []
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- __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_scan, __pyx_n_s_mca_header_dict); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 237; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_scan, __pyx_n_s_mca_header_dict); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 223, __pyx_L1_error)
__Pyx_GOTREF(__pyx_t_1);
- if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_header, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 237; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_header, __pyx_t_1) < 0) __PYX_ERR(0, 223, __pyx_L1_error)
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
- /* "silx/io/specfile.pyx":239
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* self._header = scan.mca_header_dict
*
* self.calibration = [] # <<<<<<<<<<<<<<
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- __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 239; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
+ __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 225, __pyx_L1_error)
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- if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_calibration, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 239; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
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__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
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__Pyx_GOTREF(__pyx_t_2);
__pyx_t_3 = NULL;
- if (CYTHON_COMPILING_IN_CPYTHON && likely(PyMethod_Check(__pyx_t_2))) {
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