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diff --git a/doc/source/modules/gui/hdf5/getting_started.rst b/doc/source/modules/gui/hdf5/getting_started.rst new file mode 100644 index 0000000..e843cac --- /dev/null +++ b/doc/source/modules/gui/hdf5/getting_started.rst @@ -0,0 +1,226 @@ +.. currentmodule:: silx.gui.hdf5 + +Getting started with HDF5 widgets +================================= + +Silx provides an implementation of a tree model and a tree view for HDF5 files. +The aim of this tree is to provide a convenient read-only widget for a big +amount of data and supporting file formats often used in synchrotrons. + +This page provides some source code to show how to use this widget. + +Commented source code +--------------------- + +Import and create your tree view +++++++++++++++++++++++++++++++++ + +HDF5 widgets are all exposed by the package `silx.gui.hdf5`. + +.. testsetup:: * + + from silx.gui import qt + app = qt.QApplication([]) + import silx.gui.hdf5 + treeview = silx.gui.hdf5.Hdf5TreeView() + header = treeview.header() + model = treeview.findHdf5TreeModel() + +.. testcode:: + + import silx.gui.hdf5 + treeview = silx.gui.hdf5.Hdf5TreeView() + +Custom your tree view ++++++++++++++++++++++ + +The tree view can be customized to be sorted by default. + +.. testcode:: + + # Sort content of files by time or name + treeview.setSortingEnabled(True) + +The model can be customized to support mouse interaction. +A convenient method :meth:`Hdf5TreeView.findHdf5TreeModel` returns the main +HDF5 model used through proxy models. + +.. testcode:: + + model = treeview.findHdf5TreeModel() + + # Avoid the user to drop file in the widget + model.setFileDropEnabled(False) + + # Allow the user to reorder files with drag-and-drop + model.setFileMoveEnabled(True) + +The tree view is also provided with a custom header which help to choose +visible columns. + +.. testcode:: + + header = treeview.header() + + # Select displayed columns + column_ids = [treeview.findHdf5TreeModel().NAME_COLUMN] + header.setSections(column_ids) + + # Do not allow the user to custom visible columns + header.setEnableHideColumnsPopup(False) + +Add a file by name +++++++++++++++++++ + +The model can be used to add HDF5. It is internally using +:func:`silx.io.open`. + +.. code-block:: python + + model.insertFile("test.h5") + +Add a file with h5py +++++++++++++++++++++ + +The model internally uses :mod:`h5py` object API. We can use h5py file, group +and dataset as it is. + +.. code-block:: python + + import h5py + h5 = h5py.File("test.h5") + + # We can use file + model.insertH5pyObject(h5) + + # or group or dataset + model.insertH5pyObject(h5["group1"]) + model.insertH5pyObject(h5["group1/dataset50"]) + +Add a file with silx +++++++++++++++++++++ + +Silx also provides an input API. It supports HDF5 files through :mod:`h5py`. + +.. code-block:: python + + import silx.io + + # We can load HDF5 files + model.insertH5pyObject(silx.io.open("test.h5")) + + # or Spec files + model.insertH5pyObject(silx.io.open("test.dat")) + + +Custom context menu ++++++++++++++++++++ + +The :class:`Hdf5TreeView` provides a callback API to populate the context menu. +The callback receives a :class:`Hdf5ContextMenuEvent` every time the user +requests the context menu. The event contains :class:`H5Node` objects which wrap +h5py objects with extra information. + +.. testcode:: + + def my_action_callback(obj): + # do what you want + pass + + def my_callback(event): + objects = list(event.source().selectedH5Nodes()) + obj = objects[0] # for single selection + + menu = event.menu() + if obj.ntype is h5py.Dataset: + action = qt.QAction("My funky action on datasets only", menu) + action.triggered.connect(lambda: my_action_callback(obj)) + menu.addAction(action) + + treeview.addContextMenuCallback(my_callback) + +Capture selection ++++++++++++++++++ + +The :class:`Hdf5TreeView` widget provides default Qt signals inherited from +`QAbstractItemView`. + +- `activated`: + This signal is emitted when the item specified by index is + activated by the user. How to activate items depends on the platform; + e.g., by single- or double-clicking the item, or by pressing the + Return or Enter key when the item is current. +- `clicked`: + This signal is emitted when a mouse button is clicked. The item the mouse + was clicked on is specified by index. The signal is only emitted when the + index is valid. +- `doubleClicked`: + This signal is emitted when a mouse button is double-clicked. The item + the mouse was double-clicked on is specified by index. The signal is + only emitted when the index is valid. +- `entered`: + This signal is emitted when the mouse cursor enters the item specified by + index. Mouse tracking needs to be enabled for this feature to work. +- `pressed`: + This signal is emitted when a mouse button is pressed. The item the mouse + was pressed on is specified by index. The signal is only emitted when the + index is valid. + +The method :meth:`Hdf5TreeView.selectedH5Nodes` returns an iterator of :class:`H5Node` +objects which wrap h5py objects with extra information. + +.. testcode:: + + def my_callback(index): + objects = list(treeview.selectedH5Nodes()) + obj = objects[0] # for single selection + + print(obj) + + print(obj.basename) # not provided by h5py + print(obj.name) + print(obj.file.filename) + + print(obj.local_basename) # not provided by h5py + print(obj.local_name) # not provided by h5py + print(obj.local_file.filename) # not provided by h5py + + print(obj.attrs) + + if obj.ntype is h5py.Dataset: + print(obj.dtype) + print(obj.shape) + print(obj.value) # create a copy of data of the dataset + print(obj.h5py_object) # reference to the Hdf5 dataset (or group) + + treeview.clicked.connect(my_callback) + +Example +------- + +.. toctree:: + :hidden: + + examples_hdf5widget.rst + +The :doc:`examples_hdf5widget` sample code provides an example of properties of +the view, the model and the header. + +.. image:: img/Hdf5Example.png + :height: 200px + :width: 400px + :alt: Example for HDF5TreeView features + :align: center + +Source code: :doc:`examples_hdf5widget`. + +After installing `silx` and downloading the script, you can start it from the +command prompt: + +.. code-block:: bash + + python hdf5widget.py <files> + +This example loads files added to the command line, or files dropped from the +file system. It also provides a GUI to display test files created +programmatically. |