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+# coding: utf-8
+# /*##########################################################################
+# Copyright (C) 2017 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ############################################################################*/
+
+"""
+This module provides :func:`medfilt2d`, a 2D median filter function
+with the choice between 2 implementations: 'cpp' and 'opencl'.
+"""
+
+__authors__ = ["H. Payno"]
+__license__ = "MIT"
+__date__ = "04/05/2017"
+
+from silx.math import medianfilter as medianfilter_cpp
+try:
+ from silx.opencl import medfilt as medfilt_opencl
+except ImportError:
+ medfilt_opencl = None
+import logging
+
+
+_logger = logging.getLogger(__name__)
+
+
+MEDFILT_ENGINES = ['cpp', 'opencl']
+
+
+def medfilt2d(image, kernel_size=3, engine='cpp'):
+ """Apply a median filter on an image.
+
+ This median filter is using a 'nearest' padding for values
+ past the array edges. If you want more padding options or
+ functionalities for the median filter (conditional filter
+ for example) please have a look at
+ :mod:`silx.math.medianfilter`.
+
+ :param numpy.ndarray image: the 2D array for which we want to apply
+ the median filter.
+ :param kernel_size: the dimension of the kernel.
+ Kernel size must be odd.
+ If a scalar is given, then it is used as the size in both dimension.
+ Default: (3, 3)
+ :type kernel_size: A int or a list of 2 int (kernel_height, kernel_width)
+ :param engine: the type of implementation to use.
+ Valid values are: 'cpp' (default) and 'opencl'
+
+ :returns: the array with the median value for each pixel.
+
+ .. note:: if the opencl implementation is requested but
+ is not present or fails, the cpp implementation is called.
+
+ """
+ if engine not in MEDFILT_ENGINES:
+ err = 'silx doesn\'t have an implementation for the requested engine: '
+ err += '%s' % engine
+ raise ValueError(err)
+
+ if len(image.shape) is not 2:
+ raise ValueError('medfilt2d deals with arrays of dimension 2 only')
+
+ if engine == 'cpp':
+ return medianfilter_cpp.medfilt(data=image,
+ kernel_size=kernel_size,
+ conditional=False)
+ elif engine == 'opencl':
+ if medfilt_opencl is None:
+ wrn = 'opencl median filter module import failed'
+ wrn += 'Launching cpp implementation.'
+ _logger.warning(wrn)
+ # instead call the cpp implementation
+ return medianfilter_cpp.medfilt(data=image,
+ kernel_size=kernel_size,
+ conditional=False)
+ else:
+ try:
+ medianfilter = medfilt_opencl.MedianFilter2D(image.shape,
+ devicetype="gpu")
+ res = medianfilter.medfilt2d(image, kernel_size)
+ except(RuntimeError, MemoryError, ImportError):
+ wrn = 'Exception occured in opencl median filter. '
+ wrn += 'To get more information see debug log.'
+ wrn += 'Launching cpp implementation.'
+ _logger.warning(wrn)
+ _logger.debug("median filter - openCL implementation issue.",
+ exc_info=True)
+ # instead call the cpp implementation
+ res = medianfilter_cpp.medfilt(data=image,
+ kernel_size=kernel_size,
+ conditional=False)
+
+ return res