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-rw-r--r--silx/io/specfile/include/Lists.h31
-rw-r--r--silx/io/specfile/include/SpecFile.h32
-rw-r--r--silx/io/specfile/include/SpecFileP.h31
-rw-r--r--silx/io/specfile/include/locale_management.h27
-rw-r--r--silx/io/specfile/specfile.c21782
-rw-r--r--silx/io/specfile/specfile.pyx1273
-rw-r--r--silx/io/specfile/specfile_wrapper.pxd77
-rw-r--r--silx/io/specfile/src/locale_management.c31
-rw-r--r--silx/io/specfile/src/sfdata.c31
-rw-r--r--silx/io/specfile/src/sfheader.c31
-rw-r--r--silx/io/specfile/src/sfindex.c31
-rw-r--r--silx/io/specfile/src/sfinit.c31
-rw-r--r--silx/io/specfile/src/sflabel.c31
-rw-r--r--silx/io/specfile/src/sflists.c31
-rw-r--r--silx/io/specfile/src/sfmca.c31
-rw-r--r--silx/io/specfile/src/sftools.c31
-rw-r--r--silx/io/specfile/src/sfwrite.c31
17 files changed, 251 insertions, 23312 deletions
diff --git a/silx/io/specfile/include/Lists.h b/silx/io/specfile/include/Lists.h
index bcda100..01164fb 100644
--- a/silx/io/specfile/include/Lists.h
+++ b/silx/io/specfile/include/Lists.h
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2004-2013 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 1995-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
/***************************************************************************
*
* File: Lists.h
diff --git a/silx/io/specfile/include/SpecFile.h b/silx/io/specfile/include/SpecFile.h
index fce729c..9456e3f 100644
--- a/silx/io/specfile/include/SpecFile.h
+++ b/silx/io/specfile/include/SpecFile.h
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2004-2013 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 1995-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
/***************************************************************************
*
* File: SpecFile.h
@@ -72,6 +77,7 @@
#define ROW 0 /* data_info index for no. of data rows */
#define COL 1 /* data_info index for no. of data columns*/
#define REG 2 /* data_info index for regular */
+
#define H 0
#define K 1
#define L 2
diff --git a/silx/io/specfile/include/SpecFileP.h b/silx/io/specfile/include/SpecFileP.h
index de9904d..97c3db6 100644
--- a/silx/io/specfile/include/SpecFileP.h
+++ b/silx/io/specfile/include/SpecFileP.h
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2004-2013 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 1995-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
/***************************************************************************
*
* File: SpecFileP.h
diff --git a/silx/io/specfile/include/locale_management.h b/silx/io/specfile/include/locale_management.h
index d3b9f51..64562c5 100644
--- a/silx/io/specfile/include/locale_management.h
+++ b/silx/io/specfile/include/locale_management.h
@@ -1,18 +1,23 @@
#/*##########################################################################
-# Copyright (C) 2012-2013 European Synchrotron Radiation Facility
+# Copyright (C) 2012-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
#############################################################################*/
#ifndef PyMca_LOCALE_MANAGEMENT_H
diff --git a/silx/io/specfile/specfile.c b/silx/io/specfile/specfile.c
deleted file mode 100644
index 17e3eb2..0000000
--- a/silx/io/specfile/specfile.c
+++ /dev/null
@@ -1,21782 +0,0 @@
-/* Generated by Cython 0.21.1 */
-
-#define PY_SSIZE_T_CLEAN
-#ifndef CYTHON_USE_PYLONG_INTERNALS
-#ifdef PYLONG_BITS_IN_DIGIT
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-#ifdef PYLONG_BITS_IN_DIGIT
-#define CYTHON_USE_PYLONG_INTERNALS 1
-#else
-#define CYTHON_USE_PYLONG_INTERNALS 0
-#endif
-#endif
-#endif
-#include "Python.h"
-#ifndef Py_PYTHON_H
- #error Python headers needed to compile C extensions, please install development version of Python.
-#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000)
- #error Cython requires Python 2.6+ or Python 3.2+.
-#else
-#define CYTHON_ABI "0_21_1"
-#include <stddef.h>
-#ifndef offsetof
-#define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
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- #ifndef __stdcall
- #define __stdcall
- #endif
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- #define __cdecl
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- #define __fastcall
- #endif
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-#ifndef DL_IMPORT
- #define DL_IMPORT(t) t
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- #define DL_EXPORT(t) t
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-#ifndef PY_LONG_LONG
- #define PY_LONG_LONG LONG_LONG
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- #define Py_HUGE_VAL HUGE_VAL
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-#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600
-#define Py_OptimizeFlag 0
-#endif
-#define __PYX_BUILD_PY_SSIZE_T "n"
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-#if PY_MAJOR_VERSION < 3
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- #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \
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- #define Py_TPFLAGS_CHECKTYPES 0
- #define Py_TPFLAGS_HAVE_INDEX 0
- #define Py_TPFLAGS_HAVE_NEWBUFFER 0
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-#if PY_VERSION_HEX < 0x030400a1 && !defined(Py_TPFLAGS_HAVE_FINALIZE)
- #define Py_TPFLAGS_HAVE_FINALIZE 0
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-#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
- #define CYTHON_PEP393_ENABLED 1
- #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ? \
- 0 : _PyUnicode_Ready((PyObject *)(op)))
- #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u)
- #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
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- #define __Pyx_PyUnicode_READY(op) (0)
- #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u)
- #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
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- #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
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-
-#if defined(WIN32) || defined(MS_WINDOWS)
-#define _USE_MATH_DEFINES
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-#define __PYX_HAVE__specfile
-#define __PYX_HAVE_API__specfile
-#include "string.h"
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-#include "numpy/arrayobject.h"
-#include "numpy/ufuncobject.h"
-#include "SpecFileCython.h"
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-
-#ifdef PYREX_WITHOUT_ASSERTIONS
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-
-#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
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-#define __PYX_DEFAULT_STRING_ENCODING ""
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-#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
-#define __Pyx_fits_Py_ssize_t(v, type, is_signed) ( \
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-#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen
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-#define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
-#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
-#define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode
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-#define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False))
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- PyErr_Format(
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-static PyObject *__pyx_builtin_map;
-static PyObject *__pyx_builtin_range;
-static PyObject *__pyx_builtin_IndexError;
-static PyObject *__pyx_builtin_TypeError;
-static PyObject *__pyx_builtin_open;
-static PyObject *__pyx_builtin_enumerate;
-static PyObject *__pyx_builtin_ValueError;
-static PyObject *__pyx_builtin_KeyError;
-static PyObject *__pyx_builtin_AttributeError;
-static PyObject *__pyx_builtin_RuntimeError;
-static PyObject *__pyx_pf_8specfile_3MCA___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_scan); /* proto */
-static PyObject *__pyx_pf_8specfile_3MCA_2_parse_channels(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_3MCA_4_parse_calibration(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_3MCA_6__len__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_3MCA_8__getitem__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
-static PyObject *__pyx_pf_8specfile_3MCA_10__iter__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile__add_or_concatenate(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dictionary, PyObject *__pyx_v_key, PyObject *__pyx_v_value); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_specfile, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_2index(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_4number(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_6order(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_8header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_10scan_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_12file_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_14scan_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_16mca_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_18file_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_20labels(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_22data(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_24mca(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_26motor_names(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_28motor_positions(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_30record_exists_in_hdr(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_record); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_32data_line(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_line_index); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_34data_column_by_name(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_label); /* proto */
-static PyObject *__pyx_pf_8specfile_4Scan_36motor_position_by_name(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_name); /* proto */
-static PyObject *__pyx_pf_8specfile_2_string_to_char_star(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_string_); /* proto */
-static PyObject *__pyx_pf_8specfile_4is_specfile(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_filename); /* proto */
-static int __pyx_pf_8specfile_8SpecFile___cinit__(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_filename); /* proto */
-static int __pyx_pf_8specfile_8SpecFile_2__init__(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_filename); /* proto */
-static void __pyx_pf_8specfile_8SpecFile_4__dealloc__(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self); /* proto */
-static Py_ssize_t __pyx_pf_8specfile_8SpecFile_6__len__(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_8__iter__(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_11__getitem__(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_13keys(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self); /* proto */
-static int __pyx_pf_8specfile_8SpecFile_15__contains__(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_key); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_17_get_error_string(CYTHON_UNUSED struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_error_code); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_19_handle_error(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_error_code); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_21index(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_number, PyObject *__pyx_v_scan_order); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_23number(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_25order(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_27_list(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_29list(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_31data(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_33data_column_by_name(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_label); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_35scan_header(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_37file_header(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_39columns(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_41command(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_43date(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_45labels(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_47motor_names(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_49motor_positions(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_51motor_position_by_name(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_name); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_53number_of_mca(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_55mca_calibration(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */
-static PyObject *__pyx_pf_8specfile_8SpecFile_57get_mca(struct __pyx_obj_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_mca_index); /* proto */
-static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
-static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */
-static PyObject *__pyx_tp_new_8specfile_SpecFile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
-static PyObject *__pyx_tp_new_8specfile___pyx_scope_struct____iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
-static PyObject *__pyx_tp_new_8specfile___pyx_scope_struct_1___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
-static char __pyx_k_[] = "\n";
-static char __pyx_k_2[] = " {2,}";
-static char __pyx_k_3[] = "3";
-static char __pyx_k_B[] = "B";
-static char __pyx_k_F[] = "#F ";
-static char __pyx_k_H[] = "H";
-static char __pyx_k_I[] = "I";
-static char __pyx_k_L[] = "L";
-static char __pyx_k_O[] = "O";
-static char __pyx_k_Q[] = "Q";
-static char __pyx_k_S[] = "#S ";
-static char __pyx_k_b[] = "b";
-static char __pyx_k_d[] = "d";
-static char __pyx_k_f[] = "f";
-static char __pyx_k_g[] = "g";
-static char __pyx_k_h[] = "h";
-static char __pyx_k_i[] = "i";
-static char __pyx_k_l[] = "l";
-static char __pyx_k_q[] = "q";
-static char __pyx_k_w[] = "#(\\w+) *(.*)";
-static char __pyx_k_Zd[] = "Zd";
-static char __pyx_k_Zf[] = "Zf";
-static char __pyx_k_Zg[] = "Zg";
-static char __pyx_k__7[] = "#";
-static char __pyx_k_os[] = "os";
-static char __pyx_k_re[] = "re";
-static char __pyx_k_MCA[] = "MCA";
-static char __pyx_k_MIT[] = "MIT";
-static char __pyx_k__14[] = " ";
-static char __pyx_k__25[] = ".";
-static char __pyx_k__27[] = "', '";
-static char __pyx_k__28[] = "'";
-static char __pyx_k__29[] = "";
-static char __pyx_k_d_d[] = "%d.%d";
-static char __pyx_k_doc[] = "__doc__";
-static char __pyx_k_key[] = "key";
-static char __pyx_k_len[] = "__len__";
-static char __pyx_k_map[] = "map";
-static char __pyx_k_mca[] = "_mca";
-static char __pyx_k_msg[] = "msg";
-static char __pyx_k_ret[] = "ret";
-static char __pyx_k_sub[] = "sub";
-static char __pyx_k_sys[] = "sys";
-static char __pyx_k_w_2[] = "#@(\\w+) *(.*)";
-static char __pyx_k_Scan[] = "Scan";
-static char __pyx_k_args[] = "args";
-static char __pyx_k_data[] = "_data";
-static char __pyx_k_date[] = "__date__";
-static char __pyx_k_hkey[] = "hkey";
-static char __pyx_k_init[] = "__init__";
-static char __pyx_k_iter[] = "__iter__";
-static char __pyx_k_join[] = "join";
-static char __pyx_k_keys[] = "keys";
-static char __pyx_k_line[] = "line";
-static char __pyx_k_list[] = "_list";
-static char __pyx_k_main[] = "__main__";
-static char __pyx_k_name[] = "name";
-static char __pyx_k_open[] = "open";
-static char __pyx_k_path[] = "path";
-static char __pyx_k_scan[] = "scan";
-static char __pyx_k_self[] = "self";
-static char __pyx_k_send[] = "send";
-static char __pyx_k_stop[] = "stop";
-static char __pyx_k_test[] = "__test__";
-static char __pyx_k_CALIB[] = "CALIB";
-static char __pyx_k_CHANN[] = "CHANN";
-static char __pyx_k_ascii[] = "ascii";
-static char __pyx_k_close[] = "close";
-static char __pyx_k_dtype[] = "dtype";
-static char __pyx_k_empty[] = "empty";
-static char __pyx_k_group[] = "group";
-static char __pyx_k_index[] = "index";
-static char __pyx_k_label[] = "label";
-static char __pyx_k_match[] = "match";
-static char __pyx_k_mca_2[] = "mca";
-static char __pyx_k_numpy[] = "numpy";
-static char __pyx_k_order[] = "order";
-static char __pyx_k_range[] = "range";
-static char __pyx_k_shape[] = "shape";
-static char __pyx_k_split[] = "split";
-static char __pyx_k_start[] = "start";
-static char __pyx_k_strip[] = "strip";
-static char __pyx_k_throw[] = "throw";
-static char __pyx_k_value[] = "value";
-static char __pyx_k_ERRORS[] = "ERRORS";
-static char __pyx_k_append[] = "append";
-static char __pyx_k_data_2[] = "data";
-static char __pyx_k_decode[] = "decode";
-static char __pyx_k_double[] = "double";
-static char __pyx_k_encode[] = "encode";
-static char __pyx_k_header[] = "_header";
-static char __pyx_k_hvalue[] = "hvalue";
-static char __pyx_k_import[] = "__import__";
-static char __pyx_k_isfile[] = "isfile";
-static char __pyx_k_labels[] = "_labels";
-static char __pyx_k_length[] = "length";
-static char __pyx_k_logger[] = "_logger";
-static char __pyx_k_lstrip[] = "lstrip";
-static char __pyx_k_module[] = "__module__";
-static char __pyx_k_name_2[] = "__name__";
-static char __pyx_k_number[] = "number";
-static char __pyx_k_object[] = "object";
-static char __pyx_k_record[] = "record";
-static char __pyx_k_scan_2[] = "_scan";
-static char __pyx_k_search[] = "search";
-static char __pyx_k_string[] = "string_";
-static char __pyx_k_SfError[] = "SfError";
-static char __pyx_k_authors[] = "__authors__";
-static char __pyx_k_get_mca[] = "get_mca";
-static char __pyx_k_getitem[] = "__getitem__";
-static char __pyx_k_index_2[] = "_index";
-static char __pyx_k_license[] = "__license__";
-static char __pyx_k_logging[] = "logging";
-static char __pyx_k_order_2[] = "_order";
-static char __pyx_k_os_path[] = "os.path";
-static char __pyx_k_prepare[] = "__prepare__";
-static char __pyx_k_version[] = "version";
-static char __pyx_k_warning[] = "warning";
-static char __pyx_k_KeyError[] = "KeyError";
-static char __pyx_k_L_header[] = "L_header";
-static char __pyx_k_P_Knobel[] = "P. Knobel";
-static char __pyx_k_Scan_mca[] = "Scan.mca";
-static char __pyx_k_channels[] = "channels";
-static char __pyx_k_filename[] = "filename";
-static char __pyx_k_header_2[] = "header";
-static char __pyx_k_labels_2[] = "labels";
-static char __pyx_k_number_2[] = "_number";
-static char __pyx_k_property[] = "property";
-static char __pyx_k_qualname[] = "__qualname__";
-static char __pyx_k_specfile[] = "_specfile";
-static char __pyx_k_Exception[] = "Exception";
-static char __pyx_k_MCA___len[] = "MCA.__len__";
-static char __pyx_k_Scan_data[] = "Scan.data";
-static char __pyx_k_TypeError[] = "TypeError";
-static char __pyx_k_data_line[] = "data_line";
-static char __pyx_k_enumerate[] = "enumerate";
-static char __pyx_k_getLogger[] = "getLogger";
-static char __pyx_k_increment[] = "increment";
-static char __pyx_k_match_mca[] = "match_mca";
-static char __pyx_k_mca_index[] = "mca_index";
-static char __pyx_k_metaclass[] = "__metaclass__";
-static char __pyx_k_transpose[] = "transpose";
-static char __pyx_k_27_09_2016[] = "27/09/2016";
-static char __pyx_k_IndexError[] = "IndexError";
-static char __pyx_k_MCA___init[] = "MCA.__init__";
-static char __pyx_k_MCA___iter[] = "MCA.__iter__";
-static char __pyx_k_Scan_index[] = "Scan.index";
-static char __pyx_k_Scan_order[] = "Scan.order";
-static char __pyx_k_Valid_keys[] = "\nValid keys: '";
-static char __pyx_k_ValueError[] = "ValueError";
-static char __pyx_k_calib_line[] = "calib_line";
-static char __pyx_k_chann_line[] = "chann_line";
-static char __pyx_k_dictionary[] = "dictionary";
-static char __pyx_k_line_index[] = "line_index";
-static char __pyx_k_scan_index[] = "scan_index";
-static char __pyx_k_scan_order[] = "scan_order";
-static char __pyx_k_specfile_2[] = "specfile";
-static char __pyx_k_startswith[] = "startswith";
-static char __pyx_k_Scan___init[] = "Scan.__init__";
-static char __pyx_k_Scan_header[] = "Scan.header";
-static char __pyx_k_Scan_labels[] = "Scan.labels";
-static char __pyx_k_Scan_number[] = "Scan.number";
-static char __pyx_k_basicConfig[] = "basicConfig";
-static char __pyx_k_calib_lines[] = "calib_lines";
-static char __pyx_k_calibration[] = "calibration";
-static char __pyx_k_chann_lines[] = "chann_lines";
-static char __pyx_k_file_header[] = "file_header";
-static char __pyx_k_is_specfile[] = "is_specfile";
-static char __pyx_k_motor_names[] = "motor_names";
-static char __pyx_k_scan_header[] = "scan_header";
-static char __pyx_k_scan_number[] = "scan_number";
-static char __pyx_k_RuntimeError[] = "RuntimeError";
-static char __pyx_k_SfNoMcaError[] = "SfNoMcaError";
-static char __pyx_k_handle_error[] = "_handle_error";
-static char __pyx_k_version_info[] = "version_info";
-static char __pyx_k_MCA___getitem[] = "MCA.__getitem__";
-static char __pyx_k_SfErrFileOpen[] = "SfErrFileOpen";
-static char __pyx_k_SfErrFileRead[] = "SfErrFileRead";
-static char __pyx_k_motor_names_2[] = "_motor_names";
-static char __pyx_k_number_of_mca[] = "number_of_mca";
-static char __pyx_k_AttributeError[] = "AttributeError";
-static char __pyx_k_Scan_data_line[] = "Scan.data_line";
-static char __pyx_k_SfErrFileClose[] = "SfErrFileClose";
-static char __pyx_k_SfErrFileWrite[] = "SfErrFileWrite";
-static char __pyx_k_SfErrLineEmpty[] = "SfErrLineEmpty";
-static char __pyx_k_parse_channels[] = "_parse_channels";
-static char __pyx_k_SpecFile___iter[] = "SpecFile.__iter__";
-static char __pyx_k_mca_header_dict[] = "mca_header_dict";
-static char __pyx_k_motor_positions[] = "motor_positions";
-static char __pyx_k_SF_ERR_FILE_OPEN[] = "SF_ERR_FILE_OPEN";
-static char __pyx_k_SF_ERR_NO_ERRORS[] = "SF_ERR_NO_ERRORS";
-static char __pyx_k_Scan_file_header[] = "Scan.file_header";
-static char __pyx_k_Scan_motor_names[] = "Scan.motor_names";
-static char __pyx_k_Scan_scan_header[] = "Scan.scan_header";
-static char __pyx_k_SfErrColNotFound[] = "SfErrColNotFound";
-static char __pyx_k_SfErrMcaNotFound[] = "SfErrMcaNotFound";
-static char __pyx_k_SfErrMemoryAlloc[] = "SfErrMemoryAlloc";
-static char __pyx_k_all_calib_values[] = "all_calib_values";
-static char __pyx_k_all_chann_values[] = "all_chann_values";
-static char __pyx_k_file_header_dict[] = "_file_header_dict";
-static char __pyx_k_get_error_string[] = "_get_error_string";
-static char __pyx_k_scan_header_dict[] = "_scan_header_dict";
-static char __pyx_k_SfErrLineNotFound[] = "SfErrLineNotFound";
-static char __pyx_k_SfErrScanNotFound[] = "SfErrScanNotFound";
-static char __pyx_k_SfErrUserNotFound[] = "SfErrUserNotFound";
-static char __pyx_k_file_header_lines[] = "_file_header_lines";
-static char __pyx_k_mca_header_dict_2[] = "_mca_header_dict";
-static char __pyx_k_motor_positions_2[] = "_motor_positions";
-static char __pyx_k_parse_calibration[] = "_parse_calibration";
-static char __pyx_k_scan_header_lines[] = "_scan_header_lines";
-static char __pyx_k_SfErrLabelNotFound[] = "SfErrLabelNotFound";
-static char __pyx_k_SfErrMotorNotFound[] = "SfErrMotorNotFound";
-static char __pyx_k_SfNoMca_returned_1[] = "(SfNoMca returned -1)";
-static char __pyx_k_add_or_concatenate[] = "_add_or_concatenate";
-static char __pyx_k_file_header_dict_2[] = "file_header_dict";
-static char __pyx_k_scan_header_dict_2[] = "scan_header_dict";
-static char __pyx_k_MCA__parse_channels[] = "MCA._parse_channels";
-static char __pyx_k_SfErrHeaderNotFound[] = "SfErrHeaderNotFound";
-static char __pyx_k_data_column_by_name[] = "data_column_by_name";
-static char __pyx_k_string_to_char_star[] = "_string_to_char_star";
-static char __pyx_k_Scan_mca_header_dict[] = "Scan.mca_header_dict";
-static char __pyx_k_Scan_motor_positions[] = "Scan.motor_positions";
-static char __pyx_k_record_exists_in_hdr[] = "record_exists_in_hdr";
-static char __pyx_k_SF_ERR_SCAN_NOT_FOUND[] = "SF_ERR_SCAN_NOT_FOUND";
-static char __pyx_k_Scan_file_header_dict[] = "Scan.file_header_dict";
-static char __pyx_k_Scan_scan_header_dict[] = "Scan.scan_header_dict";
-static char __pyx_k_SfErrPositionNotFound[] = "SfErrPositionNotFound";
-static char __pyx_k_one_line_calib_values[] = "one_line_calib_values";
-static char __pyx_k_one_line_chann_values[] = "one_line_chann_values";
-static char __pyx_k_MCA__parse_calibration[] = "MCA._parse_calibration";
-static char __pyx_k_motor_position_by_name[] = "motor_position_by_name";
-static char __pyx_k_Scan_data_column_by_name[] = "Scan.data_column_by_name";
-static char __pyx_k_Scan_record_exists_in_hdr[] = "Scan.record_exists_in_hdr";
-static char __pyx_k_Scan_motor_position_by_name[] = "Scan.motor_position_by_name";
-static char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous";
-static char __pyx_k_Error_while_closing_SpecFile[] = "Error while closing SpecFile";
-static char __pyx_k_number_and_M_the_order_eg_2_3[] = " number and M the order (eg '2.3').";
-static char __pyx_k_MCA_index_must_be_in_range_0_d[] = "MCA index must be in range 0-%d";
-static char __pyx_k_param_specfile_Parent_SpecFile[] = "\n\n :param specfile: Parent SpecFile from which this scan is extracted.\n :type specfile: :class:`SpecFile`\n :param scan_index: Unique index defining the scan in the SpecFile\n :type scan_index: int\n\n Interface to access a SpecFile scan\n\n A scan is a block of descriptive header lines followed by a 2D data array.\n\n Following three ways of accessing a scan are equivalent::\n\n sf = SpecFile(\"/path/to/specfile.dat\")\n\n # Explicit class instantiation\n scan2 = Scan(sf, scan_index=2)\n\n # 0-based index on a SpecFile object\n scan2 = sf[2]\n\n # Using a \"n.m\" key (scan number starting with 1, scan order)\n scan2 = sf[\"3.1\"]\n ";
-static char __pyx_k_users_payno_Documents_dev_esrf[] = "/users/payno/Documents/dev/esrf/silx/paynoSilx/silx/silx/io/specfile/specfile.pyx";
-static char __pyx_k_Base_exception_inherited_by_all[] = "Base exception inherited by all exceptions raised when a\n C function from the legacy SpecFile library returns an error\n code.\n ";
-static char __pyx_k_Scan_index_must_be_in_range_0_d[] = "Scan index must be in range 0-%d";
-static char __pyx_k_The_scan_identification_key_can[] = "The scan identification key can be an integer representing ";
-static char __pyx_k_This_module_is_a_cython_binding[] = "\nThis module is a cython binding to wrap the C SpecFile library, to access\nSpecFile data within a python program.\n\nDocumentation for the original C library SpecFile can be found on the ESRF\nwebsite:\n`The manual for the SpecFile Library <http://www.esrf.eu/files/live/sites/www/files/Instrumentation/software/beamline-control/BLISS/documentation/SpecFileManual.pdf>`_\n\nExamples\n========\n\nStart by importing :class:`SpecFile` and instantiate it:\n\n.. code-block:: python\n\n from silx.io.specfile import SpecFile\n\n sf = SpecFile(\"test.dat\")\n\nA :class:`SpecFile` instance can be accessed like a dictionary to obtain a\n:class:`Scan` instance.\n\nIf the key is a string representing two values\nseparated by a dot (e.g. ``\"1.2\"``), they will be treated as the scan number\n(``#S`` header line) and the scan order::\n\n # get second occurrence of scan \"#S 1\"\n myscan = sf[\"1.2\"]\n\n # access scan data as a numpy array\n nlines, ncolumns = myscan.data.shape\n\nIf the key is an integer, it will be treated as a 0-based index::\n\n first_scan = sf[0]\n second_scan = sf[1]\n\nIt is also possible to browse through all scans using :class:`SpecFile` as\nan iterator::\n\n for scan in sf:\n print(scan.scan_header_dict['S'])\n\nMCA spectra can be selectively loaded using an instance of :class:`MCA`\nprovided by :class:`Scan`::\n\n # Only one MCA spectrum is loaded in memory\n second_mca = first_scan.mca[1]\n\n # Iterating trough all MCA spectra in a scan:\n for mca_data in first_scan.mca:\n print(sum(mca_data))\n\nClasses\n=======\n\n- :class:`SpecFile`\n- :class:`Scan`\n- :class:`MCA`\n\nExceptions\n==========\n\n- :class:`SfError`\n- :class:`SfErrMemoryAlloc`\n- :class:`SfErrFileOpen`\n- :class:`SfErrFileClose`\n- :class:`SfErrFileRead`\n- :class:`SfErrFileWrite`\n- :class:`SfErrLineNotFound`\n- :class:`SfErrScanNotFound`\n- :class:`SfErrHeaderNotFound`\n- :class:`SfErrLabelNotFound`\n- :class:`SfErrMotorNotFound`""\n- :class:`SfErrPositionNotFound`\n- :class:`SfErrLineEmpty`\n- :class:`SfErrUserNotFound`\n- :class:`SfErrColNotFound`\n- :class:`SfErrMcaNotFound`\n\n";
-static char __pyx_k_param_scan_Parent_Scan_instance[] = "\n\n :param scan: Parent Scan instance\n :type scan: :class:`Scan`\n\n :var calibration: MCA calibration :math:`(a, b, c)` (as in\n :math:`a + b x + c x\302\262`) from ``#@CALIB`` scan header.\n :type calibration: list of 3 floats, default ``[0., 1., 0.]``\n :var channels: MCA channels list from ``#@CHANN`` scan header.\n In the absence of a ``#@CHANN`` header, this attribute is a list\n ``[0, \342\200\246, N-1]`` where ``N`` is the length of the first spectrum.\n In the absence of MCA spectra, this attribute defaults to ``None``.\n :type channels: list of int\n\n This class provides access to Multi-Channel Analysis data. A :class:`MCA`\n instance can be indexed to access 1D numpy arrays representing single \n MCA\302\240spectra.\n\n To create a :class:`MCA` instance, you must provide a parent :class:`Scan`\n instance, which in turn will provide a reference to the original\n :class:`SpecFile` instance::\n\n sf = SpecFile(\"/path/to/specfile.dat\")\n scan2 = Scan(sf, scan_index=2)\n mcas_in_scan2 = MCA(scan2)\n for i in len(mcas_in_scan2):\n mca_data = mcas_in_scan2[i]\n ... # do some something with mca_data (1D numpy array)\n\n A more pythonic way to do the same work, without having to explicitly\n instantiate ``scan`` and ``mcas_in_scan``, would be::\n\n sf = SpecFile(\"specfilename.dat\")\n # scan2 from previous example can be referred to as sf[2]\n # mcas_in_scan2 from previous example can be referred to as scan2.mca\n for mca_data in sf[2].mca:\n ... # do some something with mca_data (1D numpy array)\n\n ";
-static char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)";
-static char __pyx_k_Cannot_get_data_column_s_in_scan[] = "Cannot get data column %s in scan %d.%d";
-static char __pyx_k_Custom_exception_raised_when_SfN[] = "Custom exception raised when ``SfNoMca()`` returns ``-1``\n ";
-static char __pyx_k_Failed_to_retrieve_number_of_MCA[] = "Failed to retrieve number of MCA ";
-static char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd";
-static char __pyx_k_MCA_calibration_line_CALIB_not_f[] = "MCA calibration line (@CALIB) not found";
-static char __pyx_k_MCA_index_should_be_an_integer_s[] = "MCA index should be an integer (%s provided)";
-static char __pyx_k_No_MCA_spectrum_found_in_this_sc[] = "No MCA spectrum found in this scan";
-static char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported";
-static char __pyx_k_Parameter_value_must_be_a_string[] = "Parameter value must be a string.";
-static char __pyx_k_Unable_to_parse_file_header_line[] = "Unable to parse file header line ";
-static char __pyx_k_Unable_to_parse_scan_header_line[] = "Unable to parse scan header line ";
-static char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous";
-static char __pyx_k_the_unique_scan_index_or_a_strin[] = "the unique scan index or a string 'N.M' with N being the scan";
-static char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short.";
-static PyObject *__pyx_kp_s_;
-static PyObject *__pyx_kp_s_2;
-static PyObject *__pyx_kp_s_27_09_2016;
-static PyObject *__pyx_kp_s_3;
-static PyObject *__pyx_n_s_AttributeError;
-static PyObject *__pyx_kp_s_Base_exception_inherited_by_all;
-static PyObject *__pyx_n_s_CALIB;
-static PyObject *__pyx_n_s_CHANN;
-static PyObject *__pyx_kp_s_Cannot_get_data_column_s_in_scan;
-static PyObject *__pyx_kp_s_Custom_exception_raised_when_SfN;
-static PyObject *__pyx_n_s_ERRORS;
-static PyObject *__pyx_kp_s_Error_while_closing_SpecFile;
-static PyObject *__pyx_n_s_Exception;
-static PyObject *__pyx_kp_s_F;
-static PyObject *__pyx_kp_s_Failed_to_retrieve_number_of_MCA;
-static PyObject *__pyx_kp_u_Format_string_allocated_too_shor;
-static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2;
-static PyObject *__pyx_n_s_IndexError;
-static PyObject *__pyx_n_s_KeyError;
-static PyObject *__pyx_n_s_L;
-static PyObject *__pyx_n_s_L_header;
-static PyObject *__pyx_n_s_MCA;
-static PyObject *__pyx_n_s_MCA___getitem;
-static PyObject *__pyx_n_s_MCA___init;
-static PyObject *__pyx_n_s_MCA___iter;
-static PyObject *__pyx_n_s_MCA___len;
-static PyObject *__pyx_n_s_MCA__parse_calibration;
-static PyObject *__pyx_n_s_MCA__parse_channels;
-static PyObject *__pyx_kp_s_MCA_calibration_line_CALIB_not_f;
-static PyObject *__pyx_kp_s_MCA_index_must_be_in_range_0_d;
-static PyObject *__pyx_kp_s_MCA_index_should_be_an_integer_s;
-static PyObject *__pyx_n_s_MIT;
-static PyObject *__pyx_kp_s_No_MCA_spectrum_found_in_this_sc;
-static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor;
-static PyObject *__pyx_kp_s_P_Knobel;
-static PyObject *__pyx_kp_s_Parameter_value_must_be_a_string;
-static PyObject *__pyx_n_s_RuntimeError;
-static PyObject *__pyx_kp_s_S;
-static PyObject *__pyx_n_s_SF_ERR_FILE_OPEN;
-static PyObject *__pyx_n_s_SF_ERR_NO_ERRORS;
-static PyObject *__pyx_n_s_SF_ERR_SCAN_NOT_FOUND;
-static PyObject *__pyx_n_s_Scan;
-static PyObject *__pyx_n_s_Scan___init;
-static PyObject *__pyx_n_s_Scan_data;
-static PyObject *__pyx_n_s_Scan_data_column_by_name;
-static PyObject *__pyx_n_s_Scan_data_line;
-static PyObject *__pyx_n_s_Scan_file_header;
-static PyObject *__pyx_n_s_Scan_file_header_dict;
-static PyObject *__pyx_n_s_Scan_header;
-static PyObject *__pyx_n_s_Scan_index;
-static PyObject *__pyx_kp_s_Scan_index_must_be_in_range_0_d;
-static PyObject *__pyx_n_s_Scan_labels;
-static PyObject *__pyx_n_s_Scan_mca;
-static PyObject *__pyx_n_s_Scan_mca_header_dict;
-static PyObject *__pyx_n_s_Scan_motor_names;
-static PyObject *__pyx_n_s_Scan_motor_position_by_name;
-static PyObject *__pyx_n_s_Scan_motor_positions;
-static PyObject *__pyx_n_s_Scan_number;
-static PyObject *__pyx_n_s_Scan_order;
-static PyObject *__pyx_n_s_Scan_record_exists_in_hdr;
-static PyObject *__pyx_n_s_Scan_scan_header;
-static PyObject *__pyx_n_s_Scan_scan_header_dict;
-static PyObject *__pyx_n_s_SfErrColNotFound;
-static PyObject *__pyx_n_s_SfErrFileClose;
-static PyObject *__pyx_n_s_SfErrFileOpen;
-static PyObject *__pyx_n_s_SfErrFileRead;
-static PyObject *__pyx_n_s_SfErrFileWrite;
-static PyObject *__pyx_n_s_SfErrHeaderNotFound;
-static PyObject *__pyx_n_s_SfErrLabelNotFound;
-static PyObject *__pyx_n_s_SfErrLineEmpty;
-static PyObject *__pyx_n_s_SfErrLineNotFound;
-static PyObject *__pyx_n_s_SfErrMcaNotFound;
-static PyObject *__pyx_n_s_SfErrMemoryAlloc;
-static PyObject *__pyx_n_s_SfErrMotorNotFound;
-static PyObject *__pyx_n_s_SfErrPositionNotFound;
-static PyObject *__pyx_n_s_SfErrScanNotFound;
-static PyObject *__pyx_n_s_SfErrUserNotFound;
-static PyObject *__pyx_n_s_SfError;
-static PyObject *__pyx_n_s_SfNoMcaError;
-static PyObject *__pyx_kp_s_SfNoMca_returned_1;
-static PyObject *__pyx_n_s_SpecFile___iter;
-static PyObject *__pyx_kp_s_The_scan_identification_key_can;
-static PyObject *__pyx_n_s_TypeError;
-static PyObject *__pyx_kp_s_Unable_to_parse_file_header_line;
-static PyObject *__pyx_kp_s_Unable_to_parse_scan_header_line;
-static PyObject *__pyx_kp_s_Valid_keys;
-static PyObject *__pyx_n_s_ValueError;
-static PyObject *__pyx_kp_s__14;
-static PyObject *__pyx_kp_s__25;
-static PyObject *__pyx_kp_s__27;
-static PyObject *__pyx_kp_s__28;
-static PyObject *__pyx_kp_s__7;
-static PyObject *__pyx_n_s_add_or_concatenate;
-static PyObject *__pyx_n_s_all_calib_values;
-static PyObject *__pyx_n_s_all_chann_values;
-static PyObject *__pyx_n_s_append;
-static PyObject *__pyx_n_s_args;
-static PyObject *__pyx_n_s_ascii;
-static PyObject *__pyx_n_s_authors;
-static PyObject *__pyx_n_s_basicConfig;
-static PyObject *__pyx_n_s_calib_line;
-static PyObject *__pyx_n_s_calib_lines;
-static PyObject *__pyx_n_s_calibration;
-static PyObject *__pyx_n_s_chann_line;
-static PyObject *__pyx_n_s_chann_lines;
-static PyObject *__pyx_n_s_channels;
-static PyObject *__pyx_n_s_close;
-static PyObject *__pyx_kp_u_d_d;
-static PyObject *__pyx_n_s_data;
-static PyObject *__pyx_n_s_data_2;
-static PyObject *__pyx_n_s_data_column_by_name;
-static PyObject *__pyx_n_s_data_line;
-static PyObject *__pyx_n_s_date;
-static PyObject *__pyx_n_s_decode;
-static PyObject *__pyx_n_s_dictionary;
-static PyObject *__pyx_n_s_doc;
-static PyObject *__pyx_n_s_double;
-static PyObject *__pyx_n_s_dtype;
-static PyObject *__pyx_n_s_empty;
-static PyObject *__pyx_n_s_encode;
-static PyObject *__pyx_n_s_enumerate;
-static PyObject *__pyx_n_s_f;
-static PyObject *__pyx_n_s_file_header;
-static PyObject *__pyx_n_s_file_header_dict;
-static PyObject *__pyx_n_s_file_header_dict_2;
-static PyObject *__pyx_n_s_file_header_lines;
-static PyObject *__pyx_n_s_filename;
-static PyObject *__pyx_n_s_getLogger;
-static PyObject *__pyx_n_s_get_error_string;
-static PyObject *__pyx_n_s_get_mca;
-static PyObject *__pyx_n_s_getitem;
-static PyObject *__pyx_n_s_group;
-static PyObject *__pyx_n_s_handle_error;
-static PyObject *__pyx_n_s_header;
-static PyObject *__pyx_n_s_header_2;
-static PyObject *__pyx_n_s_hkey;
-static PyObject *__pyx_n_s_hvalue;
-static PyObject *__pyx_n_s_i;
-static PyObject *__pyx_n_s_import;
-static PyObject *__pyx_n_s_increment;
-static PyObject *__pyx_n_s_index;
-static PyObject *__pyx_n_s_index_2;
-static PyObject *__pyx_n_s_init;
-static PyObject *__pyx_n_s_is_specfile;
-static PyObject *__pyx_n_s_isfile;
-static PyObject *__pyx_n_s_iter;
-static PyObject *__pyx_n_s_join;
-static PyObject *__pyx_n_s_key;
-static PyObject *__pyx_n_s_keys;
-static PyObject *__pyx_n_s_label;
-static PyObject *__pyx_n_s_labels;
-static PyObject *__pyx_n_s_labels_2;
-static PyObject *__pyx_n_s_len;
-static PyObject *__pyx_n_s_length;
-static PyObject *__pyx_n_s_license;
-static PyObject *__pyx_n_s_line;
-static PyObject *__pyx_n_s_line_index;
-static PyObject *__pyx_n_s_list;
-static PyObject *__pyx_n_s_logger;
-static PyObject *__pyx_n_s_logging;
-static PyObject *__pyx_n_s_lstrip;
-static PyObject *__pyx_n_s_main;
-static PyObject *__pyx_n_s_map;
-static PyObject *__pyx_n_s_match;
-static PyObject *__pyx_n_s_match_mca;
-static PyObject *__pyx_n_s_mca;
-static PyObject *__pyx_n_s_mca_2;
-static PyObject *__pyx_n_s_mca_header_dict;
-static PyObject *__pyx_n_s_mca_header_dict_2;
-static PyObject *__pyx_n_s_mca_index;
-static PyObject *__pyx_n_s_metaclass;
-static PyObject *__pyx_n_s_module;
-static PyObject *__pyx_n_s_motor_names;
-static PyObject *__pyx_n_s_motor_names_2;
-static PyObject *__pyx_n_s_motor_position_by_name;
-static PyObject *__pyx_n_s_motor_positions;
-static PyObject *__pyx_n_s_motor_positions_2;
-static PyObject *__pyx_n_s_msg;
-static PyObject *__pyx_n_s_name;
-static PyObject *__pyx_n_s_name_2;
-static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous;
-static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou;
-static PyObject *__pyx_n_s_number;
-static PyObject *__pyx_n_s_number_2;
-static PyObject *__pyx_kp_s_number_and_M_the_order_eg_2_3;
-static PyObject *__pyx_n_s_number_of_mca;
-static PyObject *__pyx_n_s_numpy;
-static PyObject *__pyx_n_s_object;
-static PyObject *__pyx_n_s_one_line_calib_values;
-static PyObject *__pyx_n_s_one_line_chann_values;
-static PyObject *__pyx_n_s_open;
-static PyObject *__pyx_n_s_order;
-static PyObject *__pyx_n_s_order_2;
-static PyObject *__pyx_n_s_os;
-static PyObject *__pyx_n_s_os_path;
-static PyObject *__pyx_kp_s_param_scan_Parent_Scan_instance;
-static PyObject *__pyx_kp_s_param_specfile_Parent_SpecFile;
-static PyObject *__pyx_n_s_parse_calibration;
-static PyObject *__pyx_n_s_parse_channels;
-static PyObject *__pyx_n_s_path;
-static PyObject *__pyx_n_s_prepare;
-static PyObject *__pyx_n_s_property;
-static PyObject *__pyx_n_s_qualname;
-static PyObject *__pyx_n_s_range;
-static PyObject *__pyx_n_s_re;
-static PyObject *__pyx_n_s_record;
-static PyObject *__pyx_n_s_record_exists_in_hdr;
-static PyObject *__pyx_n_s_ret;
-static PyObject *__pyx_n_s_scan;
-static PyObject *__pyx_n_s_scan_2;
-static PyObject *__pyx_n_s_scan_header;
-static PyObject *__pyx_n_s_scan_header_dict;
-static PyObject *__pyx_n_s_scan_header_dict_2;
-static PyObject *__pyx_n_s_scan_header_lines;
-static PyObject *__pyx_n_s_scan_index;
-static PyObject *__pyx_n_s_scan_number;
-static PyObject *__pyx_n_s_scan_order;
-static PyObject *__pyx_n_s_search;
-static PyObject *__pyx_n_s_self;
-static PyObject *__pyx_n_s_send;
-static PyObject *__pyx_n_s_shape;
-static PyObject *__pyx_n_s_specfile;
-static PyObject *__pyx_n_s_specfile_2;
-static PyObject *__pyx_n_s_split;
-static PyObject *__pyx_n_s_start;
-static PyObject *__pyx_n_s_startswith;
-static PyObject *__pyx_n_s_stop;
-static PyObject *__pyx_n_s_string;
-static PyObject *__pyx_n_s_string_to_char_star;
-static PyObject *__pyx_n_s_strip;
-static PyObject *__pyx_n_s_sub;
-static PyObject *__pyx_n_s_sys;
-static PyObject *__pyx_n_s_test;
-static PyObject *__pyx_kp_s_the_unique_scan_index_or_a_strin;
-static PyObject *__pyx_n_s_throw;
-static PyObject *__pyx_n_s_transpose;
-static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd;
-static PyObject *__pyx_kp_s_users_payno_Documents_dev_esrf;
-static PyObject *__pyx_n_s_value;
-static PyObject *__pyx_n_s_version;
-static PyObject *__pyx_n_s_version_info;
-static PyObject *__pyx_kp_s_w;
-static PyObject *__pyx_kp_s_w_2;
-static PyObject *__pyx_n_s_warning;
-static PyObject *__pyx_float_0_;
-static PyObject *__pyx_float_1_;
-static PyObject *__pyx_int_0;
-static PyObject *__pyx_int_1;
-static PyObject *__pyx_int_2;
-static PyObject *__pyx_int_3;
-static PyObject *__pyx_int_4;
-static PyObject *__pyx_int_5;
-static PyObject *__pyx_int_6;
-static PyObject *__pyx_int_7;
-static PyObject *__pyx_int_8;
-static PyObject *__pyx_int_9;
-static PyObject *__pyx_int_10;
-static PyObject *__pyx_int_11;
-static PyObject *__pyx_int_12;
-static PyObject *__pyx_int_13;
-static PyObject *__pyx_int_14;
-static PyObject *__pyx_int_15;
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-#if CYTHON_COMPILING_IN_CPYTHON
- PyThreadState *tstate = PyThreadState_GET();
- *type = tstate->curexc_type;
- *value = tstate->curexc_value;
- *tb = tstate->curexc_traceback;
- tstate->curexc_type = 0;
- tstate->curexc_value = 0;
- tstate->curexc_traceback = 0;
-#else
- PyErr_Fetch(type, value, tb);
-#endif
-}
-
-#if PY_MAJOR_VERSION < 3
-static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
- CYTHON_UNUSED PyObject *cause) {
- Py_XINCREF(type);
- if (!value || value == Py_None)
- value = NULL;
- else
- Py_INCREF(value);
- if (!tb || tb == Py_None)
- tb = NULL;
- else {
- Py_INCREF(tb);
- if (!PyTraceBack_Check(tb)) {
- PyErr_SetString(PyExc_TypeError,
- "raise: arg 3 must be a traceback or None");
- goto raise_error;
- }
- }
- if (PyType_Check(type)) {
-#if CYTHON_COMPILING_IN_PYPY
- if (!value) {
- Py_INCREF(Py_None);
- value = Py_None;
- }
-#endif
- PyErr_NormalizeException(&type, &value, &tb);
- } else {
- if (value) {
- PyErr_SetString(PyExc_TypeError,
- "instance exception may not have a separate value");
- goto raise_error;
- }
- value = type;
- type = (PyObject*) Py_TYPE(type);
- Py_INCREF(type);
- if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
- PyErr_SetString(PyExc_TypeError,
- "raise: exception class must be a subclass of BaseException");
- goto raise_error;
- }
- }
- __Pyx_ErrRestore(type, value, tb);
- return;
-raise_error:
- Py_XDECREF(value);
- Py_XDECREF(type);
- Py_XDECREF(tb);
- return;
-}
-#else
-static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
- PyObject* owned_instance = NULL;
- if (tb == Py_None) {
- tb = 0;
- } else if (tb && !PyTraceBack_Check(tb)) {
- PyErr_SetString(PyExc_TypeError,
- "raise: arg 3 must be a traceback or None");
- goto bad;
- }
- if (value == Py_None)
- value = 0;
- if (PyExceptionInstance_Check(type)) {
- if (value) {
- PyErr_SetString(PyExc_TypeError,
- "instance exception may not have a separate value");
- goto bad;
- }
- value = type;
- type = (PyObject*) Py_TYPE(value);
- } else if (PyExceptionClass_Check(type)) {
- PyObject *instance_class = NULL;
- if (value && PyExceptionInstance_Check(value)) {
- instance_class = (PyObject*) Py_TYPE(value);
- if (instance_class != type) {
- if (PyObject_IsSubclass(instance_class, type)) {
- type = instance_class;
- } else {
- instance_class = NULL;
- }
- }
- }
- if (!instance_class) {
- PyObject *args;
- if (!value)
- args = PyTuple_New(0);
- else if (PyTuple_Check(value)) {
- Py_INCREF(value);
- args = value;
- } else
- args = PyTuple_Pack(1, value);
- if (!args)
- goto bad;
- owned_instance = PyObject_Call(type, args, NULL);
- Py_DECREF(args);
- if (!owned_instance)
- goto bad;
- value = owned_instance;
- if (!PyExceptionInstance_Check(value)) {
- PyErr_Format(PyExc_TypeError,
- "calling %R should have returned an instance of "
- "BaseException, not %R",
- type, Py_TYPE(value));
- goto bad;
- }
- }
- } else {
- PyErr_SetString(PyExc_TypeError,
- "raise: exception class must be a subclass of BaseException");
- goto bad;
- }
-#if PY_VERSION_HEX >= 0x03030000
- if (cause) {
-#else
- if (cause && cause != Py_None) {
-#endif
- PyObject *fixed_cause;
- if (cause == Py_None) {
- fixed_cause = NULL;
- } else if (PyExceptionClass_Check(cause)) {
- fixed_cause = PyObject_CallObject(cause, NULL);
- if (fixed_cause == NULL)
- goto bad;
- } else if (PyExceptionInstance_Check(cause)) {
- fixed_cause = cause;
- Py_INCREF(fixed_cause);
- } else {
- PyErr_SetString(PyExc_TypeError,
- "exception causes must derive from "
- "BaseException");
- goto bad;
- }
- PyException_SetCause(value, fixed_cause);
- }
- PyErr_SetObject(type, value);
- if (tb) {
-#if CYTHON_COMPILING_IN_PYPY
- PyObject *tmp_type, *tmp_value, *tmp_tb;
- PyErr_Fetch(tmp_type, tmp_value, tmp_tb);
- Py_INCREF(tb);
- PyErr_Restore(tmp_type, tmp_value, tb);
- Py_XDECREF(tmp_tb);
-#else
- PyThreadState *tstate = PyThreadState_GET();
- PyObject* tmp_tb = tstate->curexc_traceback;
- if (tb != tmp_tb) {
- Py_INCREF(tb);
- tstate->curexc_traceback = tb;
- Py_XDECREF(tmp_tb);
- }
-#endif
- }
-bad:
- Py_XDECREF(owned_instance);
- return;
-}
-#endif
-
-static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb) {
-#if CYTHON_COMPILING_IN_CPYTHON
- PyThreadState *tstate = PyThreadState_GET();
- *type = tstate->exc_type;
- *value = tstate->exc_value;
- *tb = tstate->exc_traceback;
- Py_XINCREF(*type);
- Py_XINCREF(*value);
- Py_XINCREF(*tb);
-#else
- PyErr_GetExcInfo(type, value, tb);
-#endif
-}
-static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb) {
-#if CYTHON_COMPILING_IN_CPYTHON
- PyObject *tmp_type, *tmp_value, *tmp_tb;
- PyThreadState *tstate = PyThreadState_GET();
- tmp_type = tstate->exc_type;
- tmp_value = tstate->exc_value;
- tmp_tb = tstate->exc_traceback;
- tstate->exc_type = type;
- tstate->exc_value = value;
- tstate->exc_traceback = tb;
- Py_XDECREF(tmp_type);
- Py_XDECREF(tmp_value);
- Py_XDECREF(tmp_tb);
-#else
- PyErr_SetExcInfo(type, value, tb);
-#endif
-}
-
-static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) {
- PyObject *local_type, *local_value, *local_tb;
-#if CYTHON_COMPILING_IN_CPYTHON
- PyObject *tmp_type, *tmp_value, *tmp_tb;
- PyThreadState *tstate = PyThreadState_GET();
- local_type = tstate->curexc_type;
- local_value = tstate->curexc_value;
- local_tb = tstate->curexc_traceback;
- tstate->curexc_type = 0;
- tstate->curexc_value = 0;
- tstate->curexc_traceback = 0;
-#else
- PyErr_Fetch(&local_type, &local_value, &local_tb);
-#endif
- PyErr_NormalizeException(&local_type, &local_value, &local_tb);
-#if CYTHON_COMPILING_IN_CPYTHON
- if (unlikely(tstate->curexc_type))
-#else
- if (unlikely(PyErr_Occurred()))
-#endif
- goto bad;
- #if PY_MAJOR_VERSION >= 3
- if (local_tb) {
- if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
- goto bad;
- }
- #endif
- Py_XINCREF(local_tb);
- Py_XINCREF(local_type);
- Py_XINCREF(local_value);
- *type = local_type;
- *value = local_value;
- *tb = local_tb;
-#if CYTHON_COMPILING_IN_CPYTHON
- tmp_type = tstate->exc_type;
- tmp_value = tstate->exc_value;
- tmp_tb = tstate->exc_traceback;
- tstate->exc_type = local_type;
- tstate->exc_value = local_value;
- tstate->exc_traceback = local_tb;
- Py_XDECREF(tmp_type);
- Py_XDECREF(tmp_value);
- Py_XDECREF(tmp_tb);
-#else
- PyErr_SetExcInfo(local_type, local_value, local_tb);
-#endif
- return 0;
-bad:
- *type = 0;
- *value = 0;
- *tb = 0;
- Py_XDECREF(local_type);
- Py_XDECREF(local_value);
- Py_XDECREF(local_tb);
- return -1;
-}
-
-static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) {
- PyObject *result;
-#if CYTHON_COMPILING_IN_CPYTHON
- result = PyDict_GetItem(__pyx_d, name);
- if (likely(result)) {
- Py_INCREF(result);
- } else {
-#else
- result = PyObject_GetItem(__pyx_d, name);
- if (!result) {
- PyErr_Clear();
-#endif
- result = __Pyx_GetBuiltinName(name);
- }
- return result;
-}
-
-static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno,
- CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename,
- int full_traceback) {
- PyObject *old_exc, *old_val, *old_tb;
- PyObject *ctx;
- __Pyx_ErrFetch(&old_exc, &old_val, &old_tb);
- if (full_traceback) {
- Py_XINCREF(old_exc);
- Py_XINCREF(old_val);
- Py_XINCREF(old_tb);
- __Pyx_ErrRestore(old_exc, old_val, old_tb);
- PyErr_PrintEx(1);
- }
- #if PY_MAJOR_VERSION < 3
- ctx = PyString_FromString(name);
- #else
- ctx = PyUnicode_FromString(name);
- #endif
- __Pyx_ErrRestore(old_exc, old_val, old_tb);
- if (!ctx) {
- PyErr_WriteUnraisable(Py_None);
- } else {
- PyErr_WriteUnraisable(ctx);
- Py_DECREF(ctx);
- }
-}
-
-#if !CYTHON_COMPILING_IN_CPYTHON
-static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values) {
- return PyObject_CallMethodObjArgs(sep, __pyx_n_s_join, values, NULL);
-}
-#endif
-
-static CYTHON_INLINE PyObject* __Pyx_decode_c_bytes(
- const char* cstring, Py_ssize_t length, Py_ssize_t start, Py_ssize_t stop,
- const char* encoding, const char* errors,
- PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)) {
- if (unlikely((start < 0) | (stop < 0))) {
- if (start < 0) {
- start += length;
- if (start < 0)
- start = 0;
- }
- if (stop < 0)
- stop += length;
- }
- if (stop > length)
- stop = length;
- length = stop - start;
- if (unlikely(length <= 0))
- return PyUnicode_FromUnicode(NULL, 0);
- cstring += start;
- if (decode_func) {
- return decode_func(cstring, length, errors);
- } else {
- return PyUnicode_Decode(cstring, length, encoding, errors);
- }
-}
-
-static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) {
- if (unlikely(!type)) {
- PyErr_SetString(PyExc_SystemError, "Missing type object");
- return 0;
- }
- if (likely(PyObject_TypeCheck(obj, type)))
- return 1;
- PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s",
- Py_TYPE(obj)->tp_name, type->tp_name);
- return 0;
-}
-
-static CYTHON_INLINE int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v) {
- int r;
- if (!j) return -1;
- r = PyObject_SetItem(o, j, v);
- Py_DECREF(j);
- return r;
-}
-static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v,
- int is_list, int wraparound, int boundscheck) {
-#if CYTHON_COMPILING_IN_CPYTHON
- if (is_list || PyList_CheckExact(o)) {
- Py_ssize_t n = (!wraparound) ? i : ((likely(i >= 0)) ? i : i + PyList_GET_SIZE(o));
- if ((!boundscheck) || likely((n >= 0) & (n < PyList_GET_SIZE(o)))) {
- PyObject* old = PyList_GET_ITEM(o, n);
- Py_INCREF(v);
- PyList_SET_ITEM(o, n, v);
- Py_DECREF(old);
- return 1;
- }
- } else {
- PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
- if (likely(m && m->sq_ass_item)) {
- if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
- Py_ssize_t l = m->sq_length(o);
- if (likely(l >= 0)) {
- i += l;
- } else {
- if (PyErr_ExceptionMatches(PyExc_OverflowError))
- PyErr_Clear();
- else
- return -1;
- }
- }
- return m->sq_ass_item(o, i, v);
- }
- }
-#else
-#if CYTHON_COMPILING_IN_PYPY
- if (is_list || (PySequence_Check(o) && !PyDict_Check(o))) {
-#else
- if (is_list || PySequence_Check(o)) {
-#endif
- return PySequence_SetItem(o, i, v);
- }
-#endif
- return __Pyx_SetItemInt_Generic(o, PyInt_FromSsize_t(i), v);
-}
-
-static CYTHON_INLINE PyObject* __Pyx_decode_c_string(
- const char* cstring, Py_ssize_t start, Py_ssize_t stop,
- const char* encoding, const char* errors,
- PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)) {
- Py_ssize_t length;
- if (unlikely((start < 0) | (stop < 0))) {
- length = strlen(cstring);
- if (start < 0) {
- start += length;
- if (start < 0)
- start = 0;
- }
- if (stop < 0)
- stop += length;
- }
- length = stop - start;
- if (unlikely(length <= 0))
- return PyUnicode_FromUnicode(NULL, 0);
- cstring += start;
- if (decode_func) {
- return decode_func(cstring, length, errors);
- } else {
- return PyUnicode_Decode(cstring, length, encoding, errors);
- }
-}
-
-static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) {
- PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
-}
-
-static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases) {
- Py_ssize_t i, nbases = PyTuple_GET_SIZE(bases);
- for (i=0; i < nbases; i++) {
- PyTypeObject *tmptype;
- PyObject *tmp = PyTuple_GET_ITEM(bases, i);
- tmptype = Py_TYPE(tmp);
-#if PY_MAJOR_VERSION < 3
- if (tmptype == &PyClass_Type)
- continue;
-#endif
- if (!metaclass) {
- metaclass = tmptype;
- continue;
- }
- if (PyType_IsSubtype(metaclass, tmptype))
- continue;
- if (PyType_IsSubtype(tmptype, metaclass)) {
- metaclass = tmptype;
- continue;
- }
- PyErr_SetString(PyExc_TypeError,
- "metaclass conflict: "
- "the metaclass of a derived class "
- "must be a (non-strict) subclass "
- "of the metaclasses of all its bases");
- return NULL;
- }
- if (!metaclass) {
-#if PY_MAJOR_VERSION < 3
- metaclass = &PyClass_Type;
-#else
- metaclass = &PyType_Type;
-#endif
- }
- Py_INCREF((PyObject*) metaclass);
- return (PyObject*) metaclass;
-}
-
-static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name,
- PyObject *qualname, PyObject *mkw, PyObject *modname, PyObject *doc) {
- PyObject *ns;
- if (metaclass) {
- PyObject *prep = __Pyx_PyObject_GetAttrStr(metaclass, __pyx_n_s_prepare);
- if (prep) {
- PyObject *pargs = PyTuple_Pack(2, name, bases);
- if (unlikely(!pargs)) {
- Py_DECREF(prep);
- return NULL;
- }
- ns = PyObject_Call(prep, pargs, mkw);
- Py_DECREF(prep);
- Py_DECREF(pargs);
- } else {
- if (unlikely(!PyErr_ExceptionMatches(PyExc_AttributeError)))
- return NULL;
- PyErr_Clear();
- ns = PyDict_New();
- }
- } else {
- ns = PyDict_New();
- }
- if (unlikely(!ns))
- return NULL;
- if (unlikely(PyObject_SetItem(ns, __pyx_n_s_module, modname) < 0)) goto bad;
- if (unlikely(PyObject_SetItem(ns, __pyx_n_s_qualname, qualname) < 0)) goto bad;
- if (unlikely(doc && PyObject_SetItem(ns, __pyx_n_s_doc, doc) < 0)) goto bad;
- return ns;
-bad:
- Py_DECREF(ns);
- return NULL;
-}
-static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases,
- PyObject *dict, PyObject *mkw,
- int calculate_metaclass, int allow_py2_metaclass) {
- PyObject *result, *margs;
- PyObject *owned_metaclass = NULL;
- if (allow_py2_metaclass) {
- owned_metaclass = PyObject_GetItem(dict, __pyx_n_s_metaclass);
- if (owned_metaclass) {
- metaclass = owned_metaclass;
- } else if (likely(PyErr_ExceptionMatches(PyExc_KeyError))) {
- PyErr_Clear();
- } else {
- return NULL;
- }
- }
- if (calculate_metaclass && (!metaclass || PyType_Check(metaclass))) {
- metaclass = __Pyx_CalculateMetaclass((PyTypeObject*) metaclass, bases);
- Py_XDECREF(owned_metaclass);
- if (unlikely(!metaclass))
- return NULL;
- owned_metaclass = metaclass;
- }
- margs = PyTuple_Pack(3, name, bases, dict);
- if (unlikely(!margs)) {
- result = NULL;
- } else {
- result = PyObject_Call(metaclass, margs, mkw);
- Py_DECREF(margs);
- }
- Py_XDECREF(owned_metaclass);
- return result;
-}
-
-static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) {
- PyObject* fake_module;
- PyTypeObject* cached_type = NULL;
- fake_module = PyImport_AddModule((char*) "_cython_" CYTHON_ABI);
- if (!fake_module) return NULL;
- Py_INCREF(fake_module);
- cached_type = (PyTypeObject*) PyObject_GetAttrString(fake_module, type->tp_name);
- if (cached_type) {
- if (!PyType_Check((PyObject*)cached_type)) {
- PyErr_Format(PyExc_TypeError,
- "Shared Cython type %.200s is not a type object",
- type->tp_name);
- goto bad;
- }
- if (cached_type->tp_basicsize != type->tp_basicsize) {
- PyErr_Format(PyExc_TypeError,
- "Shared Cython type %.200s has the wrong size, try recompiling",
- type->tp_name);
- goto bad;
- }
- } else {
- if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad;
- PyErr_Clear();
- if (PyType_Ready(type) < 0) goto bad;
- if (PyObject_SetAttrString(fake_module, type->tp_name, (PyObject*) type) < 0)
- goto bad;
- Py_INCREF(type);
- cached_type = type;
- }
-done:
- Py_DECREF(fake_module);
- return cached_type;
-bad:
- Py_XDECREF(cached_type);
- cached_type = NULL;
- goto done;
-}
-
-static PyObject *
-__Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure)
-{
- if (unlikely(op->func_doc == NULL)) {
- if (op->func.m_ml->ml_doc) {
-#if PY_MAJOR_VERSION >= 3
- op->func_doc = PyUnicode_FromString(op->func.m_ml->ml_doc);
-#else
- op->func_doc = PyString_FromString(op->func.m_ml->ml_doc);
-#endif
- if (unlikely(op->func_doc == NULL))
- return NULL;
- } else {
- Py_INCREF(Py_None);
- return Py_None;
- }
- }
- Py_INCREF(op->func_doc);
- return op->func_doc;
-}
-static int
-__Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value)
-{
- PyObject *tmp = op->func_doc;
- if (value == NULL) {
- value = Py_None;
- }
- Py_INCREF(value);
- op->func_doc = value;
- Py_XDECREF(tmp);
- return 0;
-}
-static PyObject *
-__Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op)
-{
- if (unlikely(op->func_name == NULL)) {
-#if PY_MAJOR_VERSION >= 3
- op->func_name = PyUnicode_InternFromString(op->func.m_ml->ml_name);
-#else
- op->func_name = PyString_InternFromString(op->func.m_ml->ml_name);
-#endif
- if (unlikely(op->func_name == NULL))
- return NULL;
- }
- Py_INCREF(op->func_name);
- return op->func_name;
-}
-static int
-__Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value)
-{
- PyObject *tmp;
-#if PY_MAJOR_VERSION >= 3
- if (unlikely(value == NULL || !PyUnicode_Check(value))) {
-#else
- if (unlikely(value == NULL || !PyString_Check(value))) {
-#endif
- PyErr_SetString(PyExc_TypeError,
- "__name__ must be set to a string object");
- return -1;
- }
- tmp = op->func_name;
- Py_INCREF(value);
- op->func_name = value;
- Py_XDECREF(tmp);
- return 0;
-}
-static PyObject *
-__Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op)
-{
- Py_INCREF(op->func_qualname);
- return op->func_qualname;
-}
-static int
-__Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value)
-{
- PyObject *tmp;
-#if PY_MAJOR_VERSION >= 3
- if (unlikely(value == NULL || !PyUnicode_Check(value))) {
-#else
- if (unlikely(value == NULL || !PyString_Check(value))) {
-#endif
- PyErr_SetString(PyExc_TypeError,
- "__qualname__ must be set to a string object");
- return -1;
- }
- tmp = op->func_qualname;
- Py_INCREF(value);
- op->func_qualname = value;
- Py_XDECREF(tmp);
- return 0;
-}
-static PyObject *
-__Pyx_CyFunction_get_self(__pyx_CyFunctionObject *m, CYTHON_UNUSED void *closure)
-{
- PyObject *self;
- self = m->func_closure;
- if (self == NULL)
- self = Py_None;
- Py_INCREF(self);
- return self;
-}
-static PyObject *
-__Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op)
-{
- if (unlikely(op->func_dict == NULL)) {
- op->func_dict = PyDict_New();
- if (unlikely(op->func_dict == NULL))
- return NULL;
- }
- Py_INCREF(op->func_dict);
- return op->func_dict;
-}
-static int
-__Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value)
-{
- PyObject *tmp;
- if (unlikely(value == NULL)) {
- PyErr_SetString(PyExc_TypeError,
- "function's dictionary may not be deleted");
- return -1;
- }
- if (unlikely(!PyDict_Check(value))) {
- PyErr_SetString(PyExc_TypeError,
- "setting function's dictionary to a non-dict");
- return -1;
- }
- tmp = op->func_dict;
- Py_INCREF(value);
- op->func_dict = value;
- Py_XDECREF(tmp);
- return 0;
-}
-static PyObject *
-__Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op)
-{
- Py_INCREF(op->func_globals);
- return op->func_globals;
-}
-static PyObject *
-__Pyx_CyFunction_get_closure(CYTHON_UNUSED __pyx_CyFunctionObject *op)
-{
- Py_INCREF(Py_None);
- return Py_None;
-}
-static PyObject *
-__Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op)
-{
- PyObject* result = (op->func_code) ? op->func_code : Py_None;
- Py_INCREF(result);
- return result;
-}
-static int
-__Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) {
- PyObject *res = op->defaults_getter((PyObject *) op);
- if (unlikely(!res))
- return -1;
- op->defaults_tuple = PyTuple_GET_ITEM(res, 0);
- Py_INCREF(op->defaults_tuple);
- op->defaults_kwdict = PyTuple_GET_ITEM(res, 1);
- Py_INCREF(op->defaults_kwdict);
- Py_DECREF(res);
- return 0;
-}
-static int
-__Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value) {
- PyObject* tmp;
- if (!value) {
- value = Py_None;
- } else if (value != Py_None && !PyTuple_Check(value)) {
- PyErr_SetString(PyExc_TypeError,
- "__defaults__ must be set to a tuple object");
- return -1;
- }
- Py_INCREF(value);
- tmp = op->defaults_tuple;
- op->defaults_tuple = value;
- Py_XDECREF(tmp);
- return 0;
-}
-static PyObject *
-__Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op) {
- PyObject* result = op->defaults_tuple;
- if (unlikely(!result)) {
- if (op->defaults_getter) {
- if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL;
- result = op->defaults_tuple;
- } else {
- result = Py_None;
- }
- }
- Py_INCREF(result);
- return result;
-}
-static int
-__Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value) {
- PyObject* tmp;
- if (!value) {
- value = Py_None;
- } else if (value != Py_None && !PyDict_Check(value)) {
- PyErr_SetString(PyExc_TypeError,
- "__kwdefaults__ must be set to a dict object");
- return -1;
- }
- Py_INCREF(value);
- tmp = op->defaults_kwdict;
- op->defaults_kwdict = value;
- Py_XDECREF(tmp);
- return 0;
-}
-static PyObject *
-__Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op) {
- PyObject* result = op->defaults_kwdict;
- if (unlikely(!result)) {
- if (op->defaults_getter) {
- if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL;
- result = op->defaults_kwdict;
- } else {
- result = Py_None;
- }
- }
- Py_INCREF(result);
- return result;
-}
-static int
-__Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value) {
- PyObject* tmp;
- if (!value || value == Py_None) {
- value = NULL;
- } else if (!PyDict_Check(value)) {
- PyErr_SetString(PyExc_TypeError,
- "__annotations__ must be set to a dict object");
- return -1;
- }
- Py_XINCREF(value);
- tmp = op->func_annotations;
- op->func_annotations = value;
- Py_XDECREF(tmp);
- return 0;
-}
-static PyObject *
-__Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op) {
- PyObject* result = op->func_annotations;
- if (unlikely(!result)) {
- result = PyDict_New();
- if (unlikely(!result)) return NULL;
- op->func_annotations = result;
- }
- Py_INCREF(result);
- return result;
-}
-static PyGetSetDef __pyx_CyFunction_getsets[] = {
- {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
- {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
- {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
- {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
- {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0},
- {(char *) "__self__", (getter)__Pyx_CyFunction_get_self, 0, 0, 0},
- {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
- {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
- {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
- {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
- {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
- {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
- {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
- {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
- {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0},
- {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0},
- {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0},
- {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0},
- {0, 0, 0, 0, 0}
-};
-#ifndef PY_WRITE_RESTRICTED
-#define PY_WRITE_RESTRICTED WRITE_RESTRICTED
-#endif
-static PyMemberDef __pyx_CyFunction_members[] = {
- {(char *) "__module__", T_OBJECT, offsetof(__pyx_CyFunctionObject, func.m_module), PY_WRITE_RESTRICTED, 0},
- {0, 0, 0, 0, 0}
-};
-static PyObject *
-__Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, CYTHON_UNUSED PyObject *args)
-{
-#if PY_MAJOR_VERSION >= 3
- return PyUnicode_FromString(m->func.m_ml->ml_name);
-#else
- return PyString_FromString(m->func.m_ml->ml_name);
-#endif
-}
-static PyMethodDef __pyx_CyFunction_methods[] = {
- {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0},
- {0, 0, 0, 0}
-};
-#if PY_VERSION_HEX < 0x030500A0
-#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist)
-#else
-#define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func.m_weakreflist)
-#endif
-static PyObject *__Pyx_CyFunction_New(PyTypeObject *type, PyMethodDef *ml, int flags, PyObject* qualname,
- PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) {
- __pyx_CyFunctionObject *op = PyObject_GC_New(__pyx_CyFunctionObject, type);
- if (op == NULL)
- return NULL;
- op->flags = flags;
- __Pyx_CyFunction_weakreflist(op) = NULL;
- op->func.m_ml = ml;
- op->func.m_self = (PyObject *) op;
- Py_XINCREF(closure);
- op->func_closure = closure;
- Py_XINCREF(module);
- op->func.m_module = module;
- op->func_dict = NULL;
- op->func_name = NULL;
- Py_INCREF(qualname);
- op->func_qualname = qualname;
- op->func_doc = NULL;
- op->func_classobj = NULL;
- op->func_globals = globals;
- Py_INCREF(op->func_globals);
- Py_XINCREF(code);
- op->func_code = code;
- op->defaults_pyobjects = 0;
- op->defaults = NULL;
- op->defaults_tuple = NULL;
- op->defaults_kwdict = NULL;
- op->defaults_getter = NULL;
- op->func_annotations = NULL;
- PyObject_GC_Track(op);
- return (PyObject *) op;
-}
-static int
-__Pyx_CyFunction_clear(__pyx_CyFunctionObject *m)
-{
- Py_CLEAR(m->func_closure);
- Py_CLEAR(m->func.m_module);
- Py_CLEAR(m->func_dict);
- Py_CLEAR(m->func_name);
- Py_CLEAR(m->func_qualname);
- Py_CLEAR(m->func_doc);
- Py_CLEAR(m->func_globals);
- Py_CLEAR(m->func_code);
- Py_CLEAR(m->func_classobj);
- Py_CLEAR(m->defaults_tuple);
- Py_CLEAR(m->defaults_kwdict);
- Py_CLEAR(m->func_annotations);
- if (m->defaults) {
- PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
- int i;
- for (i = 0; i < m->defaults_pyobjects; i++)
- Py_XDECREF(pydefaults[i]);
- PyMem_Free(m->defaults);
- m->defaults = NULL;
- }
- return 0;
-}
-static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m)
-{
- PyObject_GC_UnTrack(m);
- if (__Pyx_CyFunction_weakreflist(m) != NULL)
- PyObject_ClearWeakRefs((PyObject *) m);
- __Pyx_CyFunction_clear(m);
- PyObject_GC_Del(m);
-}
-static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg)
-{
- Py_VISIT(m->func_closure);
- Py_VISIT(m->func.m_module);
- Py_VISIT(m->func_dict);
- Py_VISIT(m->func_name);
- Py_VISIT(m->func_qualname);
- Py_VISIT(m->func_doc);
- Py_VISIT(m->func_globals);
- Py_VISIT(m->func_code);
- Py_VISIT(m->func_classobj);
- Py_VISIT(m->defaults_tuple);
- Py_VISIT(m->defaults_kwdict);
- if (m->defaults) {
- PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
- int i;
- for (i = 0; i < m->defaults_pyobjects; i++)
- Py_VISIT(pydefaults[i]);
- }
- return 0;
-}
-static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObject *type)
-{
- __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
- if (m->flags & __Pyx_CYFUNCTION_STATICMETHOD) {
- Py_INCREF(func);
- return func;
- }
- if (m->flags & __Pyx_CYFUNCTION_CLASSMETHOD) {
- if (type == NULL)
- type = (PyObject *)(Py_TYPE(obj));
- return __Pyx_PyMethod_New(func, type, (PyObject *)(Py_TYPE(type)));
- }
- if (obj == Py_None)
- obj = NULL;
- return __Pyx_PyMethod_New(func, obj, type);
-}
-static PyObject*
-__Pyx_CyFunction_repr(__pyx_CyFunctionObject *op)
-{
-#if PY_MAJOR_VERSION >= 3
- return PyUnicode_FromFormat("<cyfunction %U at %p>",
- op->func_qualname, (void *)op);
-#else
- return PyString_FromFormat("<cyfunction %s at %p>",
- PyString_AsString(op->func_qualname), (void *)op);
-#endif
-}
-#if CYTHON_COMPILING_IN_PYPY
-static PyObject * __Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) {
- PyCFunctionObject* f = (PyCFunctionObject*)func;
- PyCFunction meth = PyCFunction_GET_FUNCTION(func);
- PyObject *self = PyCFunction_GET_SELF(func);
- Py_ssize_t size;
- switch (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST)) {
- case METH_VARARGS:
- if (likely(kw == NULL) || PyDict_Size(kw) == 0)
- return (*meth)(self, arg);
- break;
- case METH_VARARGS | METH_KEYWORDS:
- return (*(PyCFunctionWithKeywords)meth)(self, arg, kw);
- case METH_NOARGS:
- if (likely(kw == NULL) || PyDict_Size(kw) == 0) {
- size = PyTuple_GET_SIZE(arg);
- if (size == 0)
- return (*meth)(self, NULL);
- PyErr_Format(PyExc_TypeError,
- "%.200s() takes no arguments (%zd given)",
- f->m_ml->ml_name, size);
- return NULL;
- }
- break;
- case METH_O:
- if (likely(kw == NULL) || PyDict_Size(kw) == 0) {
- size = PyTuple_GET_SIZE(arg);
- if (size == 1)
- return (*meth)(self, PyTuple_GET_ITEM(arg, 0));
- PyErr_Format(PyExc_TypeError,
- "%.200s() takes exactly one argument (%zd given)",
- f->m_ml->ml_name, size);
- return NULL;
- }
- break;
- default:
- PyErr_SetString(PyExc_SystemError, "Bad call flags in "
- "__Pyx_CyFunction_Call. METH_OLDARGS is no "
- "longer supported!");
- return NULL;
- }
- PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments",
- f->m_ml->ml_name);
- return NULL;
-}
-#else
-static PyObject * __Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) {
- return PyCFunction_Call(func, arg, kw);
-}
-#endif
-static PyTypeObject __pyx_CyFunctionType_type = {
- PyVarObject_HEAD_INIT(0, 0)
- "cython_function_or_method",
- sizeof(__pyx_CyFunctionObject),
- 0,
- (destructor) __Pyx_CyFunction_dealloc,
- 0,
- 0,
- 0,
-#if PY_MAJOR_VERSION < 3
- 0,
-#else
- 0,
-#endif
- (reprfunc) __Pyx_CyFunction_repr,
- 0,
- 0,
- 0,
- 0,
- __Pyx_CyFunction_Call,
- 0,
- 0,
- 0,
- 0,
- Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC,
- 0,
- (traverseproc) __Pyx_CyFunction_traverse,
- (inquiry) __Pyx_CyFunction_clear,
- 0,
-#if PY_VERSION_HEX < 0x030500A0
- offsetof(__pyx_CyFunctionObject, func_weakreflist),
-#else
- offsetof(PyCFunctionObject, m_weakreflist),
-#endif
- 0,
- 0,
- __pyx_CyFunction_methods,
- __pyx_CyFunction_members,
- __pyx_CyFunction_getsets,
- 0,
- 0,
- __Pyx_CyFunction_descr_get,
- 0,
- offsetof(__pyx_CyFunctionObject, func_dict),
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
-#if PY_VERSION_HEX >= 0x030400a1
- 0,
-#endif
-};
-static int __Pyx_CyFunction_init(void) {
-#if !CYTHON_COMPILING_IN_PYPY
- __pyx_CyFunctionType_type.tp_call = PyCFunction_Call;
-#endif
- __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type);
- if (__pyx_CyFunctionType == NULL) {
- return -1;
- }
- return 0;
-}
-static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) {
- __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
- m->defaults = PyMem_Malloc(size);
- if (!m->defaults)
- return PyErr_NoMemory();
- memset(m->defaults, 0, size);
- m->defaults_pyobjects = pyobjects;
- return m->defaults;
-}
-static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) {
- __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
- m->defaults_tuple = tuple;
- Py_INCREF(tuple);
-}
-static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) {
- __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
- m->defaults_kwdict = dict;
- Py_INCREF(dict);
-}
-static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) {
- __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
- m->func_annotations = dict;
- Py_INCREF(dict);
-}
-
-static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
- int start = 0, mid = 0, end = count - 1;
- if (end >= 0 && code_line > entries[end].code_line) {
- return count;
- }
- while (start < end) {
- mid = (start + end) / 2;
- if (code_line < entries[mid].code_line) {
- end = mid;
- } else if (code_line > entries[mid].code_line) {
- start = mid + 1;
- } else {
- return mid;
- }
- }
- if (code_line <= entries[mid].code_line) {
- return mid;
- } else {
- return mid + 1;
- }
-}
-static PyCodeObject *__pyx_find_code_object(int code_line) {
- PyCodeObject* code_object;
- int pos;
- if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
- return NULL;
- }
- pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
- if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
- return NULL;
- }
- code_object = __pyx_code_cache.entries[pos].code_object;
- Py_INCREF(code_object);
- return code_object;
-}
-static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
- int pos, i;
- __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
- if (unlikely(!code_line)) {
- return;
- }
- if (unlikely(!entries)) {
- entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
- if (likely(entries)) {
- __pyx_code_cache.entries = entries;
- __pyx_code_cache.max_count = 64;
- __pyx_code_cache.count = 1;
- entries[0].code_line = code_line;
- entries[0].code_object = code_object;
- Py_INCREF(code_object);
- }
- return;
- }
- pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
- if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
- PyCodeObject* tmp = entries[pos].code_object;
- entries[pos].code_object = code_object;
- Py_DECREF(tmp);
- return;
- }
- if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
- int new_max = __pyx_code_cache.max_count + 64;
- entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
- __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry));
- if (unlikely(!entries)) {
- return;
- }
- __pyx_code_cache.entries = entries;
- __pyx_code_cache.max_count = new_max;
- }
- for (i=__pyx_code_cache.count; i>pos; i--) {
- entries[i] = entries[i-1];
- }
- entries[pos].code_line = code_line;
- entries[pos].code_object = code_object;
- __pyx_code_cache.count++;
- Py_INCREF(code_object);
-}
-
-#include "compile.h"
-#include "frameobject.h"
-#include "traceback.h"
-static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
- const char *funcname, int c_line,
- int py_line, const char *filename) {
- PyCodeObject *py_code = 0;
- PyObject *py_srcfile = 0;
- PyObject *py_funcname = 0;
- #if PY_MAJOR_VERSION < 3
- py_srcfile = PyString_FromString(filename);
- #else
- py_srcfile = PyUnicode_FromString(filename);
- #endif
- if (!py_srcfile) goto bad;
- if (c_line) {
- #if PY_MAJOR_VERSION < 3
- py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
- #else
- py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
- #endif
- }
- else {
- #if PY_MAJOR_VERSION < 3
- py_funcname = PyString_FromString(funcname);
- #else
- py_funcname = PyUnicode_FromString(funcname);
- #endif
- }
- if (!py_funcname) goto bad;
- py_code = __Pyx_PyCode_New(
- 0,
- 0,
- 0,
- 0,
- 0,
- __pyx_empty_bytes, /*PyObject *code,*/
- __pyx_empty_tuple, /*PyObject *consts,*/
- __pyx_empty_tuple, /*PyObject *names,*/
- __pyx_empty_tuple, /*PyObject *varnames,*/
- __pyx_empty_tuple, /*PyObject *freevars,*/
- __pyx_empty_tuple, /*PyObject *cellvars,*/
- py_srcfile, /*PyObject *filename,*/
- py_funcname, /*PyObject *name,*/
- py_line,
- __pyx_empty_bytes /*PyObject *lnotab*/
- );
- Py_DECREF(py_srcfile);
- Py_DECREF(py_funcname);
- return py_code;
-bad:
- Py_XDECREF(py_srcfile);
- Py_XDECREF(py_funcname);
- return NULL;
-}
-static void __Pyx_AddTraceback(const char *funcname, int c_line,
- int py_line, const char *filename) {
- PyCodeObject *py_code = 0;
- PyFrameObject *py_frame = 0;
- py_code = __pyx_find_code_object(c_line ? c_line : py_line);
- if (!py_code) {
- py_code = __Pyx_CreateCodeObjectForTraceback(
- funcname, c_line, py_line, filename);
- if (!py_code) goto bad;
- __pyx_insert_code_object(c_line ? c_line : py_line, py_code);
- }
- py_frame = PyFrame_New(
- PyThreadState_GET(), /*PyThreadState *tstate,*/
- py_code, /*PyCodeObject *code,*/
- __pyx_d, /*PyObject *globals,*/
- 0 /*PyObject *locals*/
- );
- if (!py_frame) goto bad;
- py_frame->f_lineno = py_line;
- PyTraceBack_Here(py_frame);
-bad:
- Py_XDECREF(py_code);
- Py_XDECREF(py_frame);
-}
-
-static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
- PyObject *empty_list = 0;
- PyObject *module = 0;
- PyObject *global_dict = 0;
- PyObject *empty_dict = 0;
- PyObject *list;
- #if PY_VERSION_HEX < 0x03030000
- PyObject *py_import;
- py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
- if (!py_import)
- goto bad;
- #endif
- if (from_list)
- list = from_list;
- else {
- empty_list = PyList_New(0);
- if (!empty_list)
- goto bad;
- list = empty_list;
- }
- global_dict = PyModule_GetDict(__pyx_m);
- if (!global_dict)
- goto bad;
- empty_dict = PyDict_New();
- if (!empty_dict)
- goto bad;
- {
- #if PY_MAJOR_VERSION >= 3
- if (level == -1) {
- if (strchr(__Pyx_MODULE_NAME, '.')) {
- #if PY_VERSION_HEX < 0x03030000
- PyObject *py_level = PyInt_FromLong(1);
- if (!py_level)
- goto bad;
- module = PyObject_CallFunctionObjArgs(py_import,
- name, global_dict, empty_dict, list, py_level, NULL);
- Py_DECREF(py_level);
- #else
- module = PyImport_ImportModuleLevelObject(
- name, global_dict, empty_dict, list, 1);
- #endif
- if (!module) {
- if (!PyErr_ExceptionMatches(PyExc_ImportError))
- goto bad;
- PyErr_Clear();
- }
- }
- level = 0;
- }
- #endif
- if (!module) {
- #if PY_VERSION_HEX < 0x03030000
- PyObject *py_level = PyInt_FromLong(level);
- if (!py_level)
- goto bad;
- module = PyObject_CallFunctionObjArgs(py_import,
- name, global_dict, empty_dict, list, py_level, NULL);
- Py_DECREF(py_level);
- #else
- module = PyImport_ImportModuleLevelObject(
- name, global_dict, empty_dict, list, level);
- #endif
- }
- }
-bad:
- #if PY_VERSION_HEX < 0x03030000
- Py_XDECREF(py_import);
- #endif
- Py_XDECREF(empty_list);
- Py_XDECREF(empty_dict);
- return module;
-}
-
-static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
- const long neg_one = (long) -1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (is_unsigned) {
- if (sizeof(long) < sizeof(long)) {
- return PyInt_FromLong((long) value);
- } else if (sizeof(long) <= sizeof(unsigned long)) {
- return PyLong_FromUnsignedLong((unsigned long) value);
- } else if (sizeof(long) <= sizeof(unsigned long long)) {
- return PyLong_FromUnsignedLongLong((unsigned long long) value);
- }
- } else {
- if (sizeof(long) <= sizeof(long)) {
- return PyInt_FromLong((long) value);
- } else if (sizeof(long) <= sizeof(long long)) {
- return PyLong_FromLongLong((long long) value);
- }
- }
- {
- int one = 1; int little = (int)*(unsigned char *)&one;
- unsigned char *bytes = (unsigned char *)&value;
- return _PyLong_FromByteArray(bytes, sizeof(long),
- little, !is_unsigned);
- }
-}
-
-#define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value) \
- { \
- func_type value = func_value; \
- if (sizeof(target_type) < sizeof(func_type)) { \
- if (unlikely(value != (func_type) (target_type) value)) { \
- func_type zero = 0; \
- if (is_unsigned && unlikely(value < zero)) \
- goto raise_neg_overflow; \
- else \
- goto raise_overflow; \
- } \
- } \
- return (target_type) value; \
- }
-
-#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3
- #if CYTHON_USE_PYLONG_INTERNALS
- #include "longintrepr.h"
- #endif
-#endif
-
-static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
- const int neg_one = (int) -1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_MAJOR_VERSION < 3
- if (likely(PyInt_Check(x))) {
- if (sizeof(int) < sizeof(long)) {
- __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
- } else {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- goto raise_neg_overflow;
- }
- return (int) val;
- }
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
-#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3
- #if CYTHON_USE_PYLONG_INTERNALS
- switch (Py_SIZE(x)) {
- case 0: return 0;
- case 1: __PYX_VERIFY_RETURN_INT(int, digit, ((PyLongObject*)x)->ob_digit[0]);
- }
- #endif
-#endif
- if (unlikely(Py_SIZE(x) < 0)) {
- goto raise_neg_overflow;
- }
- if (sizeof(int) <= sizeof(unsigned long)) {
- __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong(x))
- } else if (sizeof(int) <= sizeof(unsigned long long)) {
- __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong(x))
- }
- } else {
-#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3
- #if CYTHON_USE_PYLONG_INTERNALS
- switch (Py_SIZE(x)) {
- case 0: return 0;
- case 1: __PYX_VERIFY_RETURN_INT(int, digit, +(((PyLongObject*)x)->ob_digit[0]));
- case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, -(sdigit) ((PyLongObject*)x)->ob_digit[0]);
- }
- #endif
-#endif
- if (sizeof(int) <= sizeof(long)) {
- __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong(x))
- } else if (sizeof(int) <= sizeof(long long)) {
- __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong(x))
- }
- }
- {
-#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
- PyErr_SetString(PyExc_RuntimeError,
- "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
-#else
- int val;
- PyObject *v = __Pyx_PyNumber_Int(x);
- #if PY_MAJOR_VERSION < 3
- if (likely(v) && !PyLong_Check(v)) {
- PyObject *tmp = v;
- v = PyNumber_Long(tmp);
- Py_DECREF(tmp);
- }
- #endif
- if (likely(v)) {
- int one = 1; int is_little = (int)*(unsigned char *)&one;
- unsigned char *bytes = (unsigned char *)&val;
- int ret = _PyLong_AsByteArray((PyLongObject *)v,
- bytes, sizeof(val),
- is_little, !is_unsigned);
- Py_DECREF(v);
- if (likely(!ret))
- return val;
- }
-#endif
- return (int) -1;
- }
- } else {
- int val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (int) -1;
- val = __Pyx_PyInt_As_int(tmp);
- Py_DECREF(tmp);
- return val;
- }
-raise_overflow:
- PyErr_SetString(PyExc_OverflowError,
- "value too large to convert to int");
- return (int) -1;
-raise_neg_overflow:
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to int");
- return (int) -1;
-}
-
-static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
- const int neg_one = (int) -1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
- if (is_unsigned) {
- if (sizeof(int) < sizeof(long)) {
- return PyInt_FromLong((long) value);
- } else if (sizeof(int) <= sizeof(unsigned long)) {
- return PyLong_FromUnsignedLong((unsigned long) value);
- } else if (sizeof(int) <= sizeof(unsigned long long)) {
- return PyLong_FromUnsignedLongLong((unsigned long long) value);
- }
- } else {
- if (sizeof(int) <= sizeof(long)) {
- return PyInt_FromLong((long) value);
- } else if (sizeof(int) <= sizeof(long long)) {
- return PyLong_FromLongLong((long long) value);
- }
- }
- {
- int one = 1; int little = (int)*(unsigned char *)&one;
- unsigned char *bytes = (unsigned char *)&value;
- return _PyLong_FromByteArray(bytes, sizeof(int),
- little, !is_unsigned);
- }
-}
-
-static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
- const long neg_one = (long) -1, const_zero = 0;
- const int is_unsigned = neg_one > const_zero;
-#if PY_MAJOR_VERSION < 3
- if (likely(PyInt_Check(x))) {
- if (sizeof(long) < sizeof(long)) {
- __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
- } else {
- long val = PyInt_AS_LONG(x);
- if (is_unsigned && unlikely(val < 0)) {
- goto raise_neg_overflow;
- }
- return (long) val;
- }
- } else
-#endif
- if (likely(PyLong_Check(x))) {
- if (is_unsigned) {
-#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3
- #if CYTHON_USE_PYLONG_INTERNALS
- switch (Py_SIZE(x)) {
- case 0: return 0;
- case 1: __PYX_VERIFY_RETURN_INT(long, digit, ((PyLongObject*)x)->ob_digit[0]);
- }
- #endif
-#endif
- if (unlikely(Py_SIZE(x) < 0)) {
- goto raise_neg_overflow;
- }
- if (sizeof(long) <= sizeof(unsigned long)) {
- __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong(x))
- } else if (sizeof(long) <= sizeof(unsigned long long)) {
- __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong(x))
- }
- } else {
-#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3
- #if CYTHON_USE_PYLONG_INTERNALS
- switch (Py_SIZE(x)) {
- case 0: return 0;
- case 1: __PYX_VERIFY_RETURN_INT(long, digit, +(((PyLongObject*)x)->ob_digit[0]));
- case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, -(sdigit) ((PyLongObject*)x)->ob_digit[0]);
- }
- #endif
-#endif
- if (sizeof(long) <= sizeof(long)) {
- __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong(x))
- } else if (sizeof(long) <= sizeof(long long)) {
- __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong(x))
- }
- }
- {
-#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
- PyErr_SetString(PyExc_RuntimeError,
- "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
-#else
- long val;
- PyObject *v = __Pyx_PyNumber_Int(x);
- #if PY_MAJOR_VERSION < 3
- if (likely(v) && !PyLong_Check(v)) {
- PyObject *tmp = v;
- v = PyNumber_Long(tmp);
- Py_DECREF(tmp);
- }
- #endif
- if (likely(v)) {
- int one = 1; int is_little = (int)*(unsigned char *)&one;
- unsigned char *bytes = (unsigned char *)&val;
- int ret = _PyLong_AsByteArray((PyLongObject *)v,
- bytes, sizeof(val),
- is_little, !is_unsigned);
- Py_DECREF(v);
- if (likely(!ret))
- return val;
- }
-#endif
- return (long) -1;
- }
- } else {
- long val;
- PyObject *tmp = __Pyx_PyNumber_Int(x);
- if (!tmp) return (long) -1;
- val = __Pyx_PyInt_As_long(tmp);
- Py_DECREF(tmp);
- return val;
- }
-raise_overflow:
- PyErr_SetString(PyExc_OverflowError,
- "value too large to convert to long");
- return (long) -1;
-raise_neg_overflow:
- PyErr_SetString(PyExc_OverflowError,
- "can't convert negative value to long");
- return (long) -1;
-}
-
-#if CYTHON_CCOMPLEX
- #ifdef __cplusplus
- static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
- return ::std::complex< float >(x, y);
- }
- #else
- static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
- return x + y*(__pyx_t_float_complex)_Complex_I;
- }
- #endif
-#else
- static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
- __pyx_t_float_complex z;
- z.real = x;
- z.imag = y;
- return z;
- }
-#endif
-
-#if CYTHON_CCOMPLEX
-#else
- static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) {
- return (a.real == b.real) && (a.imag == b.imag);
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) {
- __pyx_t_float_complex z;
- z.real = a.real + b.real;
- z.imag = a.imag + b.imag;
- return z;
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) {
- __pyx_t_float_complex z;
- z.real = a.real - b.real;
- z.imag = a.imag - b.imag;
- return z;
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) {
- __pyx_t_float_complex z;
- z.real = a.real * b.real - a.imag * b.imag;
- z.imag = a.real * b.imag + a.imag * b.real;
- return z;
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) {
- __pyx_t_float_complex z;
- float denom = b.real * b.real + b.imag * b.imag;
- z.real = (a.real * b.real + a.imag * b.imag) / denom;
- z.imag = (a.imag * b.real - a.real * b.imag) / denom;
- return z;
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) {
- __pyx_t_float_complex z;
- z.real = -a.real;
- z.imag = -a.imag;
- return z;
- }
- static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) {
- return (a.real == 0) && (a.imag == 0);
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) {
- __pyx_t_float_complex z;
- z.real = a.real;
- z.imag = -a.imag;
- return z;
- }
- #if 1
- static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) {
- #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
- return sqrtf(z.real*z.real + z.imag*z.imag);
- #else
- return hypotf(z.real, z.imag);
- #endif
- }
- static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) {
- __pyx_t_float_complex z;
- float r, lnr, theta, z_r, z_theta;
- if (b.imag == 0 && b.real == (int)b.real) {
- if (b.real < 0) {
- float denom = a.real * a.real + a.imag * a.imag;
- a.real = a.real / denom;
- a.imag = -a.imag / denom;
- b.real = -b.real;
- }
- switch ((int)b.real) {
- case 0:
- z.real = 1;
- z.imag = 0;
- return z;
- case 1:
- return a;
- case 2:
- z = __Pyx_c_prodf(a, a);
- return __Pyx_c_prodf(a, a);
- case 3:
- z = __Pyx_c_prodf(a, a);
- return __Pyx_c_prodf(z, a);
- case 4:
- z = __Pyx_c_prodf(a, a);
- return __Pyx_c_prodf(z, z);
- }
- }
- if (a.imag == 0) {
- if (a.real == 0) {
- return a;
- }
- r = a.real;
- theta = 0;
- } else {
- r = __Pyx_c_absf(a);
- theta = atan2f(a.imag, a.real);
- }
- lnr = logf(r);
- z_r = expf(lnr * b.real - theta * b.imag);
- z_theta = theta * b.real + lnr * b.imag;
- z.real = z_r * cosf(z_theta);
- z.imag = z_r * sinf(z_theta);
- return z;
- }
- #endif
-#endif
-
-#if CYTHON_CCOMPLEX
- #ifdef __cplusplus
- static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
- return ::std::complex< double >(x, y);
- }
- #else
- static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
- return x + y*(__pyx_t_double_complex)_Complex_I;
- }
- #endif
-#else
- static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
- __pyx_t_double_complex z;
- z.real = x;
- z.imag = y;
- return z;
- }
-#endif
-
-#if CYTHON_CCOMPLEX
-#else
- static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) {
- return (a.real == b.real) && (a.imag == b.imag);
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) {
- __pyx_t_double_complex z;
- z.real = a.real + b.real;
- z.imag = a.imag + b.imag;
- return z;
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) {
- __pyx_t_double_complex z;
- z.real = a.real - b.real;
- z.imag = a.imag - b.imag;
- return z;
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) {
- __pyx_t_double_complex z;
- z.real = a.real * b.real - a.imag * b.imag;
- z.imag = a.real * b.imag + a.imag * b.real;
- return z;
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) {
- __pyx_t_double_complex z;
- double denom = b.real * b.real + b.imag * b.imag;
- z.real = (a.real * b.real + a.imag * b.imag) / denom;
- z.imag = (a.imag * b.real - a.real * b.imag) / denom;
- return z;
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) {
- __pyx_t_double_complex z;
- z.real = -a.real;
- z.imag = -a.imag;
- return z;
- }
- static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) {
- return (a.real == 0) && (a.imag == 0);
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) {
- __pyx_t_double_complex z;
- z.real = a.real;
- z.imag = -a.imag;
- return z;
- }
- #if 1
- static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) {
- #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
- return sqrt(z.real*z.real + z.imag*z.imag);
- #else
- return hypot(z.real, z.imag);
- #endif
- }
- static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) {
- __pyx_t_double_complex z;
- double r, lnr, theta, z_r, z_theta;
- if (b.imag == 0 && b.real == (int)b.real) {
- if (b.real < 0) {
- double denom = a.real * a.real + a.imag * a.imag;
- a.real = a.real / denom;
- a.imag = -a.imag / denom;
- b.real = -b.real;
- }
- switch ((int)b.real) {
- case 0:
- z.real = 1;
- z.imag = 0;
- return z;
- case 1:
- return a;
- case 2:
- z = __Pyx_c_prod(a, a);
- return __Pyx_c_prod(a, a);
- case 3:
- z = __Pyx_c_prod(a, a);
- return __Pyx_c_prod(z, a);
- case 4:
- z = __Pyx_c_prod(a, a);
- return __Pyx_c_prod(z, z);
- }
- }
- if (a.imag == 0) {
- if (a.real == 0) {
- return a;
- }
- r = a.real;
- theta = 0;
- } else {
- r = __Pyx_c_abs(a);
- theta = atan2(a.imag, a.real);
- }
- lnr = log(r);
- z_r = exp(lnr * b.real - theta * b.imag);
- z_theta = theta * b.real + lnr * b.imag;
- z.real = z_r * cos(z_theta);
- z.imag = z_r * sin(z_theta);
- return z;
- }
- #endif
-#endif
-
-static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) {
- PyObject *tmp_type, *tmp_value, *tmp_tb;
-#if CYTHON_COMPILING_IN_CPYTHON
- PyThreadState *tstate = PyThreadState_GET();
- tmp_type = tstate->exc_type;
- tmp_value = tstate->exc_value;
- tmp_tb = tstate->exc_traceback;
- tstate->exc_type = *type;
- tstate->exc_value = *value;
- tstate->exc_traceback = *tb;
-#else
- PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb);
- PyErr_SetExcInfo(*type, *value, *tb);
-#endif
- *type = tmp_type;
- *value = tmp_value;
- *tb = tmp_tb;
-}
-
-static PyObject *__Pyx_Generator_Next(PyObject *self);
-static PyObject *__Pyx_Generator_Send(PyObject *self, PyObject *value);
-static PyObject *__Pyx_Generator_Close(PyObject *self);
-static PyObject *__Pyx_Generator_Throw(PyObject *gen, PyObject *args);
-static PyTypeObject *__pyx_GeneratorType = 0;
-#define __Pyx_Generator_CheckExact(obj) (Py_TYPE(obj) == __pyx_GeneratorType)
-#define __Pyx_Generator_Undelegate(gen) Py_CLEAR((gen)->yieldfrom)
-#if 1 || PY_VERSION_HEX < 0x030300B0
-static int __Pyx_PyGen_FetchStopIterationValue(PyObject **pvalue) {
- PyObject *et, *ev, *tb;
- PyObject *value = NULL;
- __Pyx_ErrFetch(&et, &ev, &tb);
- if (!et) {
- Py_XDECREF(tb);
- Py_XDECREF(ev);
- Py_INCREF(Py_None);
- *pvalue = Py_None;
- return 0;
- }
- if (unlikely(et != PyExc_StopIteration) &&
- unlikely(!PyErr_GivenExceptionMatches(et, PyExc_StopIteration))) {
- __Pyx_ErrRestore(et, ev, tb);
- return -1;
- }
- if (likely(et == PyExc_StopIteration)) {
- if (likely(!ev) || !PyObject_IsInstance(ev, PyExc_StopIteration)) {
- if (!ev) {
- Py_INCREF(Py_None);
- ev = Py_None;
- }
- Py_XDECREF(tb);
- Py_DECREF(et);
- *pvalue = ev;
- return 0;
- }
- }
- PyErr_NormalizeException(&et, &ev, &tb);
- if (unlikely(!PyObject_IsInstance(ev, PyExc_StopIteration))) {
- __Pyx_ErrRestore(et, ev, tb);
- return -1;
- }
- Py_XDECREF(tb);
- Py_DECREF(et);
-#if PY_VERSION_HEX >= 0x030300A0
- value = ((PyStopIterationObject *)ev)->value;
- Py_INCREF(value);
- Py_DECREF(ev);
-#else
- {
- PyObject* args = PyObject_GetAttr(ev, __pyx_n_s_args);
- Py_DECREF(ev);
- if (likely(args)) {
- value = PyObject_GetItem(args, 0);
- Py_DECREF(args);
- }
- if (unlikely(!value)) {
- __Pyx_ErrRestore(NULL, NULL, NULL);
- Py_INCREF(Py_None);
- value = Py_None;
- }
- }
-#endif
- *pvalue = value;
- return 0;
-}
-#endif
-static CYTHON_INLINE
-void __Pyx_Generator_ExceptionClear(__pyx_GeneratorObject *self) {
- PyObject *exc_type = self->exc_type;
- PyObject *exc_value = self->exc_value;
- PyObject *exc_traceback = self->exc_traceback;
- self->exc_type = NULL;
- self->exc_value = NULL;
- self->exc_traceback = NULL;
- Py_XDECREF(exc_type);
- Py_XDECREF(exc_value);
- Py_XDECREF(exc_traceback);
-}
-static CYTHON_INLINE
-int __Pyx_Generator_CheckRunning(__pyx_GeneratorObject *gen) {
- if (unlikely(gen->is_running)) {
- PyErr_SetString(PyExc_ValueError,
- "generator already executing");
- return 1;
- }
- return 0;
-}
-static CYTHON_INLINE
-PyObject *__Pyx_Generator_SendEx(__pyx_GeneratorObject *self, PyObject *value) {
- PyObject *retval;
- assert(!self->is_running);
- if (unlikely(self->resume_label == 0)) {
- if (unlikely(value && value != Py_None)) {
- PyErr_SetString(PyExc_TypeError,
- "can't send non-None value to a "
- "just-started generator");
- return NULL;
- }
- }
- if (unlikely(self->resume_label == -1)) {
- PyErr_SetNone(PyExc_StopIteration);
- return NULL;
- }
- if (value) {
-#if CYTHON_COMPILING_IN_PYPY
-#else
- if (self->exc_traceback) {
- PyThreadState *tstate = PyThreadState_GET();
- PyTracebackObject *tb = (PyTracebackObject *) self->exc_traceback;
- PyFrameObject *f = tb->tb_frame;
- Py_XINCREF(tstate->frame);
- assert(f->f_back == NULL);
- f->f_back = tstate->frame;
- }
-#endif
- __Pyx_ExceptionSwap(&self->exc_type, &self->exc_value,
- &self->exc_traceback);
- } else {
- __Pyx_Generator_ExceptionClear(self);
- }
- self->is_running = 1;
- retval = self->body((PyObject *) self, value);
- self->is_running = 0;
- if (retval) {
- __Pyx_ExceptionSwap(&self->exc_type, &self->exc_value,
- &self->exc_traceback);
-#if CYTHON_COMPILING_IN_PYPY
-#else
- if (self->exc_traceback) {
- PyTracebackObject *tb = (PyTracebackObject *) self->exc_traceback;
- PyFrameObject *f = tb->tb_frame;
- Py_CLEAR(f->f_back);
- }
-#endif
- } else {
- __Pyx_Generator_ExceptionClear(self);
- }
- return retval;
-}
-static CYTHON_INLINE
-PyObject *__Pyx_Generator_FinishDelegation(__pyx_GeneratorObject *gen) {
- PyObject *ret;
- PyObject *val = NULL;
- __Pyx_Generator_Undelegate(gen);
- __Pyx_PyGen_FetchStopIterationValue(&val);
- ret = __Pyx_Generator_SendEx(gen, val);
- Py_XDECREF(val);
- return ret;
-}
-static PyObject *__Pyx_Generator_Next(PyObject *self) {
- __pyx_GeneratorObject *gen = (__pyx_GeneratorObject*) self;
- PyObject *yf = gen->yieldfrom;
- if (unlikely(__Pyx_Generator_CheckRunning(gen)))
- return NULL;
- if (yf) {
- PyObject *ret;
- gen->is_running = 1;
- ret = Py_TYPE(yf)->tp_iternext(yf);
- gen->is_running = 0;
- if (likely(ret)) {
- return ret;
- }
- return __Pyx_Generator_FinishDelegation(gen);
- }
- return __Pyx_Generator_SendEx(gen, Py_None);
-}
-static PyObject *__Pyx_Generator_Send(PyObject *self, PyObject *value) {
- __pyx_GeneratorObject *gen = (__pyx_GeneratorObject*) self;
- PyObject *yf = gen->yieldfrom;
- if (unlikely(__Pyx_Generator_CheckRunning(gen)))
- return NULL;
- if (yf) {
- PyObject *ret;
- gen->is_running = 1;
- if (__Pyx_Generator_CheckExact(yf)) {
- ret = __Pyx_Generator_Send(yf, value);
- } else {
- if (value == Py_None)
- ret = PyIter_Next(yf);
- else
- ret = __Pyx_PyObject_CallMethod1(yf, __pyx_n_s_send, value);
- }
- gen->is_running = 0;
- if (likely(ret)) {
- return ret;
- }
- return __Pyx_Generator_FinishDelegation(gen);
- }
- return __Pyx_Generator_SendEx(gen, value);
-}
-static int __Pyx_Generator_CloseIter(__pyx_GeneratorObject *gen, PyObject *yf) {
- PyObject *retval = NULL;
- int err = 0;
- if (__Pyx_Generator_CheckExact(yf)) {
- retval = __Pyx_Generator_Close(yf);
- if (!retval)
- return -1;
- } else {
- PyObject *meth;
- gen->is_running = 1;
- meth = PyObject_GetAttr(yf, __pyx_n_s_close);
- if (unlikely(!meth)) {
- if (!PyErr_ExceptionMatches(PyExc_AttributeError)) {
- PyErr_WriteUnraisable(yf);
- }
- PyErr_Clear();
- } else {
- retval = PyObject_CallFunction(meth, NULL);
- Py_DECREF(meth);
- if (!retval)
- err = -1;
- }
- gen->is_running = 0;
- }
- Py_XDECREF(retval);
- return err;
-}
-static PyObject *__Pyx_Generator_Close(PyObject *self) {
- __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
- PyObject *retval, *raised_exception;
- PyObject *yf = gen->yieldfrom;
- int err = 0;
- if (unlikely(__Pyx_Generator_CheckRunning(gen)))
- return NULL;
- if (yf) {
- Py_INCREF(yf);
- err = __Pyx_Generator_CloseIter(gen, yf);
- __Pyx_Generator_Undelegate(gen);
- Py_DECREF(yf);
- }
- if (err == 0)
- PyErr_SetNone(PyExc_GeneratorExit);
- retval = __Pyx_Generator_SendEx(gen, NULL);
- if (retval) {
- Py_DECREF(retval);
- PyErr_SetString(PyExc_RuntimeError,
- "generator ignored GeneratorExit");
- return NULL;
- }
- raised_exception = PyErr_Occurred();
- if (!raised_exception
- || raised_exception == PyExc_StopIteration
- || raised_exception == PyExc_GeneratorExit
- || PyErr_GivenExceptionMatches(raised_exception, PyExc_GeneratorExit)
- || PyErr_GivenExceptionMatches(raised_exception, PyExc_StopIteration))
- {
- if (raised_exception) PyErr_Clear();
- Py_INCREF(Py_None);
- return Py_None;
- }
- return NULL;
-}
-static PyObject *__Pyx_Generator_Throw(PyObject *self, PyObject *args) {
- __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
- PyObject *typ;
- PyObject *tb = NULL;
- PyObject *val = NULL;
- PyObject *yf = gen->yieldfrom;
- if (!PyArg_UnpackTuple(args, (char *)"throw", 1, 3, &typ, &val, &tb))
- return NULL;
- if (unlikely(__Pyx_Generator_CheckRunning(gen)))
- return NULL;
- if (yf) {
- PyObject *ret;
- Py_INCREF(yf);
- if (PyErr_GivenExceptionMatches(typ, PyExc_GeneratorExit)) {
- int err = __Pyx_Generator_CloseIter(gen, yf);
- Py_DECREF(yf);
- __Pyx_Generator_Undelegate(gen);
- if (err < 0)
- return __Pyx_Generator_SendEx(gen, NULL);
- goto throw_here;
- }
- gen->is_running = 1;
- if (__Pyx_Generator_CheckExact(yf)) {
- ret = __Pyx_Generator_Throw(yf, args);
- } else {
- PyObject *meth = PyObject_GetAttr(yf, __pyx_n_s_throw);
- if (unlikely(!meth)) {
- Py_DECREF(yf);
- if (!PyErr_ExceptionMatches(PyExc_AttributeError)) {
- gen->is_running = 0;
- return NULL;
- }
- PyErr_Clear();
- __Pyx_Generator_Undelegate(gen);
- gen->is_running = 0;
- goto throw_here;
- }
- ret = PyObject_CallObject(meth, args);
- Py_DECREF(meth);
- }
- gen->is_running = 0;
- Py_DECREF(yf);
- if (!ret) {
- ret = __Pyx_Generator_FinishDelegation(gen);
- }
- return ret;
- }
-throw_here:
- __Pyx_Raise(typ, val, tb, NULL);
- return __Pyx_Generator_SendEx(gen, NULL);
-}
-static int __Pyx_Generator_traverse(PyObject *self, visitproc visit, void *arg) {
- __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
- Py_VISIT(gen->closure);
- Py_VISIT(gen->classobj);
- Py_VISIT(gen->yieldfrom);
- Py_VISIT(gen->exc_type);
- Py_VISIT(gen->exc_value);
- Py_VISIT(gen->exc_traceback);
- return 0;
-}
-static int __Pyx_Generator_clear(PyObject *self) {
- __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
- Py_CLEAR(gen->closure);
- Py_CLEAR(gen->classobj);
- Py_CLEAR(gen->yieldfrom);
- Py_CLEAR(gen->exc_type);
- Py_CLEAR(gen->exc_value);
- Py_CLEAR(gen->exc_traceback);
- Py_CLEAR(gen->gi_name);
- Py_CLEAR(gen->gi_qualname);
- return 0;
-}
-static void __Pyx_Generator_dealloc(PyObject *self) {
- __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
- PyObject_GC_UnTrack(gen);
- if (gen->gi_weakreflist != NULL)
- PyObject_ClearWeakRefs(self);
- if (gen->resume_label > 0) {
- PyObject_GC_Track(self);
-#if PY_VERSION_HEX >= 0x030400a1
- if (PyObject_CallFinalizerFromDealloc(self))
-#else
- Py_TYPE(gen)->tp_del(self);
- if (self->ob_refcnt > 0)
-#endif
- {
- return;
- }
- PyObject_GC_UnTrack(self);
- }
- __Pyx_Generator_clear(self);
- PyObject_GC_Del(gen);
-}
-static void __Pyx_Generator_del(PyObject *self) {
- PyObject *res;
- PyObject *error_type, *error_value, *error_traceback;
- __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self;
- if (gen->resume_label <= 0)
- return ;
-#if PY_VERSION_HEX < 0x030400a1
- assert(self->ob_refcnt == 0);
- self->ob_refcnt = 1;
-#endif
- __Pyx_ErrFetch(&error_type, &error_value, &error_traceback);
- res = __Pyx_Generator_Close(self);
- if (res == NULL)
- PyErr_WriteUnraisable(self);
- else
- Py_DECREF(res);
- __Pyx_ErrRestore(error_type, error_value, error_traceback);
-#if PY_VERSION_HEX < 0x030400a1
- assert(self->ob_refcnt > 0);
- if (--self->ob_refcnt == 0) {
- return;
- }
- {
- Py_ssize_t refcnt = self->ob_refcnt;
- _Py_NewReference(self);
- self->ob_refcnt = refcnt;
- }
-#if CYTHON_COMPILING_IN_CPYTHON
- assert(PyType_IS_GC(self->ob_type) &&
- _Py_AS_GC(self)->gc.gc_refs != _PyGC_REFS_UNTRACKED);
- _Py_DEC_REFTOTAL;
-#endif
-#ifdef COUNT_ALLOCS
- --Py_TYPE(self)->tp_frees;
- --Py_TYPE(self)->tp_allocs;
-#endif
-#endif
-}
-static PyObject *
-__Pyx_Generator_get_name(__pyx_GeneratorObject *self)
-{
- Py_INCREF(self->gi_name);
- return self->gi_name;
-}
-static int
-__Pyx_Generator_set_name(__pyx_GeneratorObject *self, PyObject *value)
-{
- PyObject *tmp;
-#if PY_MAJOR_VERSION >= 3
- if (unlikely(value == NULL || !PyUnicode_Check(value))) {
-#else
- if (unlikely(value == NULL || !PyString_Check(value))) {
-#endif
- PyErr_SetString(PyExc_TypeError,
- "__name__ must be set to a string object");
- return -1;
- }
- tmp = self->gi_name;
- Py_INCREF(value);
- self->gi_name = value;
- Py_XDECREF(tmp);
- return 0;
-}
-static PyObject *
-__Pyx_Generator_get_qualname(__pyx_GeneratorObject *self)
-{
- Py_INCREF(self->gi_qualname);
- return self->gi_qualname;
-}
-static int
-__Pyx_Generator_set_qualname(__pyx_GeneratorObject *self, PyObject *value)
-{
- PyObject *tmp;
-#if PY_MAJOR_VERSION >= 3
- if (unlikely(value == NULL || !PyUnicode_Check(value))) {
-#else
- if (unlikely(value == NULL || !PyString_Check(value))) {
-#endif
- PyErr_SetString(PyExc_TypeError,
- "__qualname__ must be set to a string object");
- return -1;
- }
- tmp = self->gi_qualname;
- Py_INCREF(value);
- self->gi_qualname = value;
- Py_XDECREF(tmp);
- return 0;
-}
-static PyGetSetDef __pyx_Generator_getsets[] = {
- {(char *) "__name__", (getter)__Pyx_Generator_get_name, (setter)__Pyx_Generator_set_name,
- (char*) PyDoc_STR("name of the generator"), 0},
- {(char *) "__qualname__", (getter)__Pyx_Generator_get_qualname, (setter)__Pyx_Generator_set_qualname,
- (char*) PyDoc_STR("qualified name of the generator"), 0},
- {0, 0, 0, 0, 0}
-};
-static PyMemberDef __pyx_Generator_memberlist[] = {
- {(char *) "gi_running", T_BOOL, offsetof(__pyx_GeneratorObject, is_running), READONLY, NULL},
- {0, 0, 0, 0, 0}
-};
-static PyMethodDef __pyx_Generator_methods[] = {
- {"send", (PyCFunction) __Pyx_Generator_Send, METH_O, 0},
- {"throw", (PyCFunction) __Pyx_Generator_Throw, METH_VARARGS, 0},
- {"close", (PyCFunction) __Pyx_Generator_Close, METH_NOARGS, 0},
- {0, 0, 0, 0}
-};
-static PyTypeObject __pyx_GeneratorType_type = {
- PyVarObject_HEAD_INIT(0, 0)
- "generator",
- sizeof(__pyx_GeneratorObject),
- 0,
- (destructor) __Pyx_Generator_dealloc,
- 0,
- 0,
- 0,
-#if PY_MAJOR_VERSION < 3
- 0,
-#else
- 0,
-#endif
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_HAVE_FINALIZE,
- 0,
- (traverseproc) __Pyx_Generator_traverse,
- 0,
- 0,
- offsetof(__pyx_GeneratorObject, gi_weakreflist),
- 0,
- (iternextfunc) __Pyx_Generator_Next,
- __pyx_Generator_methods,
- __pyx_Generator_memberlist,
- __pyx_Generator_getsets,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
- 0,
-#if PY_VERSION_HEX >= 0x030400a1
- 0,
-#else
- __Pyx_Generator_del,
-#endif
- 0,
-#if PY_VERSION_HEX >= 0x030400a1
- __Pyx_Generator_del,
-#endif
-};
-static __pyx_GeneratorObject *__Pyx_Generator_New(__pyx_generator_body_t body,
- PyObject *closure, PyObject *name, PyObject *qualname) {
- __pyx_GeneratorObject *gen =
- PyObject_GC_New(__pyx_GeneratorObject, &__pyx_GeneratorType_type);
- if (gen == NULL)
- return NULL;
- gen->body = body;
- gen->closure = closure;
- Py_XINCREF(closure);
- gen->is_running = 0;
- gen->resume_label = 0;
- gen->classobj = NULL;
- gen->yieldfrom = NULL;
- gen->exc_type = NULL;
- gen->exc_value = NULL;
- gen->exc_traceback = NULL;
- gen->gi_weakreflist = NULL;
- Py_XINCREF(qualname);
- gen->gi_qualname = qualname;
- Py_XINCREF(name);
- gen->gi_name = name;
- PyObject_GC_Track(gen);
- return gen;
-}
-static int __pyx_Generator_init(void) {
- __pyx_GeneratorType_type.tp_getattro = PyObject_GenericGetAttr;
- __pyx_GeneratorType_type.tp_iter = PyObject_SelfIter;
- __pyx_GeneratorType = __Pyx_FetchCommonType(&__pyx_GeneratorType_type);
- if (__pyx_GeneratorType == NULL) {
- return -1;
- }
- return 0;
-}
-
-static int __Pyx_check_binary_version(void) {
- char ctversion[4], rtversion[4];
- PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
- PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion());
- if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) {
- char message[200];
- PyOS_snprintf(message, sizeof(message),
- "compiletime version %s of module '%.100s' "
- "does not match runtime version %s",
- ctversion, __Pyx_MODULE_NAME, rtversion);
- return PyErr_WarnEx(NULL, message, 1);
- }
- return 0;
-}
-
-#ifndef __PYX_HAVE_RT_ImportModule
-#define __PYX_HAVE_RT_ImportModule
-static PyObject *__Pyx_ImportModule(const char *name) {
- PyObject *py_name = 0;
- PyObject *py_module = 0;
- py_name = __Pyx_PyIdentifier_FromString(name);
- if (!py_name)
- goto bad;
- py_module = PyImport_Import(py_name);
- Py_DECREF(py_name);
- return py_module;
-bad:
- Py_XDECREF(py_name);
- return 0;
-}
-#endif
-
-#ifndef __PYX_HAVE_RT_ImportType
-#define __PYX_HAVE_RT_ImportType
-static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name,
- size_t size, int strict)
-{
- PyObject *py_module = 0;
- PyObject *result = 0;
- PyObject *py_name = 0;
- char warning[200];
- Py_ssize_t basicsize;
-#ifdef Py_LIMITED_API
- PyObject *py_basicsize;
-#endif
- py_module = __Pyx_ImportModule(module_name);
- if (!py_module)
- goto bad;
- py_name = __Pyx_PyIdentifier_FromString(class_name);
- if (!py_name)
- goto bad;
- result = PyObject_GetAttr(py_module, py_name);
- Py_DECREF(py_name);
- py_name = 0;
- Py_DECREF(py_module);
- py_module = 0;
- if (!result)
- goto bad;
- if (!PyType_Check(result)) {
- PyErr_Format(PyExc_TypeError,
- "%.200s.%.200s is not a type object",
- module_name, class_name);
- goto bad;
- }
-#ifndef Py_LIMITED_API
- basicsize = ((PyTypeObject *)result)->tp_basicsize;
-#else
- py_basicsize = PyObject_GetAttrString(result, "__basicsize__");
- if (!py_basicsize)
- goto bad;
- basicsize = PyLong_AsSsize_t(py_basicsize);
- Py_DECREF(py_basicsize);
- py_basicsize = 0;
- if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred())
- goto bad;
-#endif
- if (!strict && (size_t)basicsize > size) {
- PyOS_snprintf(warning, sizeof(warning),
- "%s.%s size changed, may indicate binary incompatibility",
- module_name, class_name);
- if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
- }
- else if ((size_t)basicsize != size) {
- PyErr_Format(PyExc_ValueError,
- "%.200s.%.200s has the wrong size, try recompiling",
- module_name, class_name);
- goto bad;
- }
- return (PyTypeObject *)result;
-bad:
- Py_XDECREF(py_module);
- Py_XDECREF(result);
- return NULL;
-}
-#endif
-
-static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
- while (t->p) {
- #if PY_MAJOR_VERSION < 3
- if (t->is_unicode) {
- *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
- } else if (t->intern) {
- *t->p = PyString_InternFromString(t->s);
- } else {
- *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
- }
- #else
- if (t->is_unicode | t->is_str) {
- if (t->intern) {
- *t->p = PyUnicode_InternFromString(t->s);
- } else if (t->encoding) {
- *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
- } else {
- *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
- }
- } else {
- *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
- }
- #endif
- if (!*t->p)
- return -1;
- ++t;
- }
- return 0;
-}
-
-static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
- return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str));
-}
-static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) {
- Py_ssize_t ignore;
- return __Pyx_PyObject_AsStringAndSize(o, &ignore);
-}
-static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
-#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
- if (
-#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
- __Pyx_sys_getdefaultencoding_not_ascii &&
-#endif
- PyUnicode_Check(o)) {
-#if PY_VERSION_HEX < 0x03030000
- char* defenc_c;
- PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
- if (!defenc) return NULL;
- defenc_c = PyBytes_AS_STRING(defenc);
-#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
- {
- char* end = defenc_c + PyBytes_GET_SIZE(defenc);
- char* c;
- for (c = defenc_c; c < end; c++) {
- if ((unsigned char) (*c) >= 128) {
- PyUnicode_AsASCIIString(o);
- return NULL;
- }
- }
- }
-#endif
- *length = PyBytes_GET_SIZE(defenc);
- return defenc_c;
-#else
- if (__Pyx_PyUnicode_READY(o) == -1) return NULL;
-#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
- if (PyUnicode_IS_ASCII(o)) {
- *length = PyUnicode_GET_LENGTH(o);
- return PyUnicode_AsUTF8(o);
- } else {
- PyUnicode_AsASCIIString(o);
- return NULL;
- }
-#else
- return PyUnicode_AsUTF8AndSize(o, length);
-#endif
-#endif
- } else
-#endif
-#if !CYTHON_COMPILING_IN_PYPY
- if (PyByteArray_Check(o)) {
- *length = PyByteArray_GET_SIZE(o);
- return PyByteArray_AS_STRING(o);
- } else
-#endif
- {
- char* result;
- int r = PyBytes_AsStringAndSize(o, &result, length);
- if (unlikely(r < 0)) {
- return NULL;
- } else {
- return result;
- }
- }
-}
-static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
- int is_true = x == Py_True;
- if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
- else return PyObject_IsTrue(x);
-}
-static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) {
- PyNumberMethods *m;
- const char *name = NULL;
- PyObject *res = NULL;
-#if PY_MAJOR_VERSION < 3
- if (PyInt_Check(x) || PyLong_Check(x))
-#else
- if (PyLong_Check(x))
-#endif
- return Py_INCREF(x), x;
- m = Py_TYPE(x)->tp_as_number;
-#if PY_MAJOR_VERSION < 3
- if (m && m->nb_int) {
- name = "int";
- res = PyNumber_Int(x);
- }
- else if (m && m->nb_long) {
- name = "long";
- res = PyNumber_Long(x);
- }
-#else
- if (m && m->nb_int) {
- name = "int";
- res = PyNumber_Long(x);
- }
-#endif
- if (res) {
-#if PY_MAJOR_VERSION < 3
- if (!PyInt_Check(res) && !PyLong_Check(res)) {
-#else
- if (!PyLong_Check(res)) {
-#endif
- PyErr_Format(PyExc_TypeError,
- "__%.4s__ returned non-%.4s (type %.200s)",
- name, name, Py_TYPE(res)->tp_name);
- Py_DECREF(res);
- return NULL;
- }
- }
- else if (!PyErr_Occurred()) {
- PyErr_SetString(PyExc_TypeError,
- "an integer is required");
- }
- return res;
-}
-static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
- Py_ssize_t ival;
- PyObject *x;
-#if PY_MAJOR_VERSION < 3
- if (likely(PyInt_CheckExact(b)))
- return PyInt_AS_LONG(b);
-#endif
- if (likely(PyLong_CheckExact(b))) {
- #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3
- #if CYTHON_USE_PYLONG_INTERNALS
- switch (Py_SIZE(b)) {
- case -1: return -(sdigit)((PyLongObject*)b)->ob_digit[0];
- case 0: return 0;
- case 1: return ((PyLongObject*)b)->ob_digit[0];
- }
- #endif
- #endif
- return PyLong_AsSsize_t(b);
- }
- x = PyNumber_Index(b);
- if (!x) return -1;
- ival = PyInt_AsSsize_t(x);
- Py_DECREF(x);
- return ival;
-}
-static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
- return PyInt_FromSize_t(ival);
-}
-
-
-#endif /* Py_PYTHON_H */
diff --git a/silx/io/specfile/specfile.pyx b/silx/io/specfile/specfile.pyx
deleted file mode 100644
index a465aa6..0000000
--- a/silx/io/specfile/specfile.pyx
+++ /dev/null
@@ -1,1273 +0,0 @@
-# coding: utf-8
-# /*##########################################################################
-# Copyright (C) 2016-2017 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ############################################################################*/
-"""
-This module is a cython binding to wrap the C SpecFile library, to access
-SpecFile data within a python program.
-
-Documentation for the original C library SpecFile can be found on the ESRF
-website:
-`The manual for the SpecFile Library <http://www.esrf.eu/files/live/sites/www/files/Instrumentation/software/beamline-control/BLISS/documentation/SpecFileManual.pdf>`_
-
-Examples
-========
-
-Start by importing :class:`SpecFile` and instantiate it:
-
-.. code-block:: python
-
- from silx.io.specfile import SpecFile
-
- sf = SpecFile("test.dat")
-
-A :class:`SpecFile` instance can be accessed like a dictionary to obtain a
-:class:`Scan` instance.
-
-If the key is a string representing two values
-separated by a dot (e.g. ``"1.2"``), they will be treated as the scan number
-(``#S`` header line) and the scan order::
-
- # get second occurrence of scan "#S 1"
- myscan = sf["1.2"]
-
- # access scan data as a numpy array
- nlines, ncolumns = myscan.data.shape
-
-If the key is an integer, it will be treated as a 0-based index::
-
- first_scan = sf[0]
- second_scan = sf[1]
-
-It is also possible to browse through all scans using :class:`SpecFile` as
-an iterator::
-
- for scan in sf:
- print(scan.scan_header_dict['S'])
-
-MCA spectra can be selectively loaded using an instance of :class:`MCA`
-provided by :class:`Scan`::
-
- # Only one MCA spectrum is loaded in memory
- second_mca = first_scan.mca[1]
-
- # Iterating trough all MCA spectra in a scan:
- for mca_data in first_scan.mca:
- print(sum(mca_data))
-
-Classes
-=======
-
-- :class:`SpecFile`
-- :class:`Scan`
-- :class:`MCA`
-
-Exceptions
-==========
-
-- :class:`SfError`
-- :class:`SfErrMemoryAlloc`
-- :class:`SfErrFileOpen`
-- :class:`SfErrFileClose`
-- :class:`SfErrFileRead`
-- :class:`SfErrFileWrite`
-- :class:`SfErrLineNotFound`
-- :class:`SfErrScanNotFound`
-- :class:`SfErrHeaderNotFound`
-- :class:`SfErrLabelNotFound`
-- :class:`SfErrMotorNotFound`
-- :class:`SfErrPositionNotFound`
-- :class:`SfErrLineEmpty`
-- :class:`SfErrUserNotFound`
-- :class:`SfErrColNotFound`
-- :class:`SfErrMcaNotFound`
-
-"""
-
-__authors__ = ["P. Knobel"]
-__license__ = "MIT"
-__date__ = "27/09/2016"
-
-import os.path
-import logging
-import numpy
-import re
-import sys
-
-logging.basicConfig()
-_logger = logging.getLogger(__name__)
-
-cimport numpy
-cimport cython
-from libc.stdlib cimport free
-
-cimport specfile_wrapper
-
-# hack to avoid C compiler warnings about unused functions in the NumPy header files
-# Sources: Cython test suite.
-cdef extern from *:
- bint FALSE "0"
- void import_array()
- void import_umath()
-
-if FALSE:
- import_array()
- import_umath()
-
-numpy.import_array()
-
-
-SF_ERR_NO_ERRORS = 0
-SF_ERR_FILE_OPEN = 2
-SF_ERR_SCAN_NOT_FOUND = 7
-
-
-# custom errors
-class SfError(Exception):
- """Base exception inherited by all exceptions raised when a
- C function from the legacy SpecFile library returns an error
- code.
- """
- pass
-
-class SfErrMemoryAlloc(SfError): pass
-class SfErrFileOpen(SfError): pass
-class SfErrFileClose(SfError): pass
-class SfErrFileRead(SfError): pass
-class SfErrFileWrite(SfError): pass
-class SfErrLineNotFound(SfError): pass
-class SfErrScanNotFound(SfError): pass
-class SfErrHeaderNotFound(SfError): pass
-class SfErrLabelNotFound(SfError): pass
-class SfErrMotorNotFound(SfError): pass
-class SfErrPositionNotFound(SfError): pass
-class SfErrLineEmpty(SfError): pass
-class SfErrUserNotFound(SfError): pass
-class SfErrColNotFound(SfError): pass
-class SfErrMcaNotFound(SfError): pass
-
-
-ERRORS = {
- 1: SfErrMemoryAlloc,
- 2: SfErrFileOpen,
- 3: SfErrFileClose,
- 4: SfErrFileRead,
- 5: SfErrFileWrite,
- 6: SfErrLineNotFound,
- 7: SfErrScanNotFound,
- 8: SfErrHeaderNotFound,
- 9: SfErrLabelNotFound,
- 10: SfErrMotorNotFound,
- 11: SfErrPositionNotFound,
- 12: SfErrLineEmpty,
- 13: SfErrUserNotFound,
- 14: SfErrColNotFound,
- 15: SfErrMcaNotFound,
-}
-
-
-class SfNoMcaError(SfError):
- """Custom exception raised when ``SfNoMca()`` returns ``-1``
- """
- pass
-
-
-class MCA(object):
- """
-
- :param scan: Parent Scan instance
- :type scan: :class:`Scan`
-
- :var calibration: MCA calibration :math:`(a, b, c)` (as in
- :math:`a + b x + c x²`) from ``#@CALIB`` scan header.
- :type calibration: list of 3 floats, default ``[0., 1., 0.]``
- :var channels: MCA channels list from ``#@CHANN`` scan header.
- In the absence of a ``#@CHANN`` header, this attribute is a list
- ``[0, …, N-1]`` where ``N`` is the length of the first spectrum.
- In the absence of MCA spectra, this attribute defaults to ``None``.
- :type channels: list of int
-
- This class provides access to Multi-Channel Analysis data. A :class:`MCA`
- instance can be indexed to access 1D numpy arrays representing single
- MCA spectra.
-
- To create a :class:`MCA` instance, you must provide a parent :class:`Scan`
- instance, which in turn will provide a reference to the original
- :class:`SpecFile` instance::
-
- sf = SpecFile("/path/to/specfile.dat")
- scan2 = Scan(sf, scan_index=2)
- mcas_in_scan2 = MCA(scan2)
- for i in len(mcas_in_scan2):
- mca_data = mcas_in_scan2[i]
- ... # do some something with mca_data (1D numpy array)
-
- A more pythonic way to do the same work, without having to explicitly
- instantiate ``scan`` and ``mcas_in_scan``, would be::
-
- sf = SpecFile("specfilename.dat")
- # scan2 from previous example can be referred to as sf[2]
- # mcas_in_scan2 from previous example can be referred to as scan2.mca
- for mca_data in sf[2].mca:
- ... # do some something with mca_data (1D numpy array)
-
- """
- def __init__(self, scan):
- self._scan = scan
-
- # Header dict
- self._header = scan.mca_header_dict
-
- self.calibration = []
- """List of lists of calibration values,
- one list of 3 floats per MCA device or a single list applying to
- all devices """
- self._parse_calibration()
-
- self.channels = []
- """List of lists of channels,
- one list of integers per MCA device or a single list applying to
- all devices"""
- self._parse_channels()
-
- def _parse_channels(self):
- """Fill :attr:`channels`"""
- # Channels list
- if "CHANN" in self._header:
- chann_lines = self._header["CHANN"].split("\n")
- all_chann_values = [chann_line.split() for chann_line in chann_lines]
- for one_line_chann_values in all_chann_values:
- length, start, stop, increment = map(int, one_line_chann_values)
- self.channels.append(list(range(start, stop + 1, increment)))
- elif len(self):
- # in the absence of #@CHANN, use shape of first MCA
- length = self[0].shape[0]
- start, stop, increment = (0, length - 1, 1)
- self.channels.append(list(range(start, stop + 1, increment)))
-
- def _parse_calibration(self):
- """Fill :attr:`calibration`"""
- # Channels list
- if "CALIB" in self._header:
- calib_lines = self._header["CALIB"].split("\n")
- all_calib_values = [calib_line.split() for calib_line in calib_lines]
- for one_line_calib_values in all_calib_values:
- self.calibration.append(list(map(float, one_line_calib_values)))
- else:
- # in the absence of #@calib, use default
- self.calibration.append([0., 1., 0.])
-
- def __len__(self):
- """
-
- :return: Number of mca in Scan
- :rtype: int
- """
- return self._scan._specfile.number_of_mca(self._scan.index)
-
- def __getitem__(self, key):
- """Return a single MCA data line
-
- :param key: 0-based index of MCA within Scan
- :type key: int
-
- :return: Single MCA
- :rtype: 1D numpy array
- """
- if not len(self):
- raise IndexError("No MCA spectrum found in this scan")
-
- if isinstance(key, int):
- mca_index = key
- # allow negative index, like lists
- if mca_index < 0:
- mca_index = len(self) + mca_index
- else:
- raise TypeError("MCA index should be an integer (%s provided)" %
- (type(key)))
-
- if not 0 <= mca_index < len(self):
- msg = "MCA index must be in range 0-%d" % (len(self) - 1)
- raise IndexError(msg)
-
- return self._scan._specfile.get_mca(self._scan.index,
- mca_index)
-
- def __iter__(self):
- """Return the next MCA data line each time this method is called.
-
- :return: Single MCA
- :rtype: 1D numpy array
- """
- for mca_index in range(len(self)):
- yield self._scan._specfile.get_mca(self._scan.index, mca_index)
-
-
-def _add_or_concatenate(dictionary, key, value):
- """If key doesn't exist in dictionary, create a new ``key: value`` pair.
- Else append/concatenate the new value to the existing one
- """
- try:
- if not key in dictionary:
- dictionary[key] = value
- else:
- dictionary[key] += "\n" + value
- except TypeError:
- raise TypeError("Parameter value must be a string.")
-
-
-class Scan(object):
- """
-
- :param specfile: Parent SpecFile from which this scan is extracted.
- :type specfile: :class:`SpecFile`
- :param scan_index: Unique index defining the scan in the SpecFile
- :type scan_index: int
-
- Interface to access a SpecFile scan
-
- A scan is a block of descriptive header lines followed by a 2D data array.
-
- Following three ways of accessing a scan are equivalent::
-
- sf = SpecFile("/path/to/specfile.dat")
-
- # Explicit class instantiation
- scan2 = Scan(sf, scan_index=2)
-
- # 0-based index on a SpecFile object
- scan2 = sf[2]
-
- # Using a "n.m" key (scan number starting with 1, scan order)
- scan2 = sf["3.1"]
- """
- def __init__(self, specfile, scan_index):
- self._specfile = specfile
-
- self._index = scan_index
- self._number = specfile.number(scan_index)
- self._order = specfile.order(scan_index)
-
- self._scan_header_lines = self._specfile.scan_header(self._index)
- self._file_header_lines = self._specfile.file_header(self._index)
-
- if self._file_header_lines == self._scan_header_lines:
- self._file_header_lines = []
- self._header = self._file_header_lines + self._scan_header_lines
-
- self._scan_header_dict = {}
- self._mca_header_dict = {}
- for line in self._scan_header_lines:
- match = re.search(r"#(\w+) *(.*)", line)
- match_mca = re.search(r"#@(\w+) *(.*)", line)
- if match:
- hkey = match.group(1).lstrip("#").strip()
- hvalue = match.group(2).strip()
- _add_or_concatenate(self._scan_header_dict, hkey, hvalue)
- elif match_mca:
- hkey = match_mca.group(1).lstrip("#").strip()
- hvalue = match_mca.group(2).strip()
- _add_or_concatenate(self._mca_header_dict, hkey, hvalue)
- else:
- # this shouldn't happen
- _logger.warning("Unable to parse scan header line " + line)
-
- self._labels = []
- if self.record_exists_in_hdr('L'):
- try:
- self._labels = self._specfile.labels(self._index)
- except SfErrLineNotFound:
- # SpecFile.labels raises an IndexError when encountering
- # a Scan with no data, even if the header exists.
- L_header = re.sub(r" {2,}", " ", # max. 2 spaces
- self._scan_header_dict["L"])
- self._labels = L_header.split(" ")
-
-
- self._file_header_dict = {}
- for line in self._file_header_lines:
- match = re.search(r"#(\w+) *(.*)", line)
- if match:
- # header type
- hkey = match.group(1).lstrip("#").strip()
- hvalue = match.group(2).strip()
- _add_or_concatenate(self._file_header_dict, hkey, hvalue)
- else:
- _logger.warning("Unable to parse file header line " + line)
-
- self._motor_names = self._specfile.motor_names(self._index)
- self._motor_positions = self._specfile.motor_positions(self._index)
-
- self._data = None
- self._mca = None
-
- @cython.embedsignature(False)
- @property
- def index(self):
- """Unique scan index 0 - len(specfile)-1
-
- This attribute is implemented as a read-only property as changing
- its value may cause nasty side-effects (such as loading data from a
- different scan without updating the header accordingly."""
- return self._index
-
- @cython.embedsignature(False)
- @property
- def number(self):
- """First value on #S line (as int)"""
- return self._number
-
- @cython.embedsignature(False)
- @property
- def order(self):
- """Order can be > 1 if the same number is repeated in a specfile"""
- return self._order
-
- @cython.embedsignature(False)
- @property
- def header(self):
- """List of raw header lines (as a list of strings).
-
- This includes the file header, the scan header and possibly a MCA
- header.
- """
- return self._header
-
- @cython.embedsignature(False)
- @property
- def scan_header(self):
- """List of raw scan header lines (as a list of strings).
- """
- return self._scan_header_lines
-
- @cython.embedsignature(False)
- @property
- def file_header(self):
- """List of raw file header lines (as a list of strings).
- """
- return self._file_header_lines
-
- @cython.embedsignature(False)
- @property
- def scan_header_dict(self):
- """
- Dictionary of scan header strings, keys without the leading``#``
- (e.g. ``scan_header_dict["S"]``).
- Note: this does not include MCA header lines starting with ``#@``.
- """
- return self._scan_header_dict
-
- @cython.embedsignature(False)
- @property
- def mca_header_dict(self):
- """
- Dictionary of MCA header strings, keys without the leading ``#@``
- (e.g. ``mca_header_dict["CALIB"]``).
- """
- return self._mca_header_dict
-
- @cython.embedsignature(False)
- @property
- def file_header_dict(self):
- """
- Dictionary of file header strings, keys without the leading ``#``
- (e.g. ``file_header_dict["F"]``).
- """
- return self._file_header_dict
-
- @cython.embedsignature(False)
- @property
- def labels(self):
- """
- List of data column headers from ``#L`` scan header
- """
- return self._labels
-
- @cython.embedsignature(False)
- @property
- def data(self):
- """Scan data as a 2D numpy.ndarray with the usual attributes
- (e.g. data.shape).
-
- The first index is the detector, the second index is the sample index.
- """
- if self._data is None:
- self._data = numpy.transpose(self._specfile.data(self._index))
-
- return self._data
-
- @cython.embedsignature(False)
- @property
- def mca(self):
- """MCA data in this scan.
-
- Each multichannel analysis is a 1D numpy array. Metadata about
- MCA data is to be found in :py:attr:`mca_header`.
-
- :rtype: :class:`MCA`
- """
- if self._mca is None:
- self._mca = MCA(self)
- return self._mca
-
- @cython.embedsignature(False)
- @property
- def motor_names(self):
- """List of motor names from the ``#O`` file header line.
- """
- return self._motor_names
-
- @cython.embedsignature(False)
- @property
- def motor_positions(self):
- """List of motor positions as floats from the ``#P`` scan header line.
- """
- return self._motor_positions
-
- def record_exists_in_hdr(self, record):
- """Check whether a scan header line exists.
-
- This should be used before attempting to retrieve header information
- using a C function that may crash with a *segmentation fault* if the
- header isn't defined in the SpecFile.
-
- :param record: single upper case letter corresponding to the
- header you want to test (e.g. ``L`` for labels)
- :type record: str
-
- :return: True or False
- :rtype: boolean
- """
- for line in self._header:
- if line.startswith("#" + record):
- return True
- return False
-
- def data_line(self, line_index):
- """Returns data for a given line of this scan.
-
- .. note::
-
- A data line returned by this method, corresponds to a data line
- in the original specfile (a series of data points, one per
- detector). In the :attr:`data` array, this line index corresponds
- to the index in the second dimension (~ column) of the array.
-
- :param line_index: Index of data line to retrieve (starting with 0)
- :type line_index: int
-
- :return: Line data as a 1D array of doubles
- :rtype: numpy.ndarray
- """
- # attribute data corresponds to a transposed version of the original
- # specfile data (where detectors correspond to columns)
- return self.data[:, line_index]
-
- def data_column_by_name(self, label):
- """Returns a data column
-
- :param label: Label of data column to retrieve, as defined on the
- ``#L`` line of the scan header.
- :type label: str
-
- :return: Line data as a 1D array of doubles
- :rtype: numpy.ndarray
- """
- try:
- ret = self._specfile.data_column_by_name(self._index, label)
- except SfErrLineNotFound:
- # Could be a "#C Scan aborted after 0 points"
- _logger.warning("Cannot get data column %s in scan %d.%d",
- label, self.number, self.order)
- ret = numpy.empty((0, ), numpy.double)
- return ret
-
-
- def motor_position_by_name(self, name):
- """Returns the position for a given motor
-
- :param name: Name of motor, as defined on the ``#O`` line of the
- file header.
- :type name: str
-
- :return: Motor position
- :rtype: float
- """
- return self._specfile.motor_position_by_name(self._index, name)
-
-
-def _string_to_char_star(string_):
- """Convert a string to ASCII encoded bytes when using python3"""
- if sys.version.startswith("3") and not isinstance(string_, bytes):
- return bytes(string_, "ascii")
- return string_
-
-
-def is_specfile(filename):
- """Test if a file is a SPEC file, by checking if one of the first two
- lines starts with *#F* (SPEC file header) or *#S* (scan header).
-
- :param str filename: File path
- :return: *True* if file is a SPEC file, *False* if it is not a SPEC file
- :rtype: bool
- """
- if not os.path.isfile(filename):
- return False
- # test for presence of #S or #F in first two lines
- f = open(filename)
- for i, line in enumerate(f):
- if line.startswith("#S ") or line.startswith("#F "):
- f.close()
- return True
- if i >= 10:
- break
- f.close()
- return False
-
-
-cdef class SpecFile(object):
- """
-
- :param filename: Path of the SpecFile to read
-
- This class wraps the main data and header access functions of the C
- SpecFile library.
- """
-
- cdef:
- specfile_wrapper.SpecFileHandle *handle
- str filename
- int __open_failed
-
- def __cinit__(self, filename):
- cdef int error = SF_ERR_NO_ERRORS
- self.__open_failed = 0
-
- if is_specfile(filename):
- filename = _string_to_char_star(filename)
- self.handle = specfile_wrapper.SfOpen(filename, &error)
- else:
- self.__open_failed = 1
- self._handle_error(SF_ERR_FILE_OPEN)
- if error:
- self.__open_failed = 1
- self._handle_error(error)
-
- def __init__(self, filename):
- if not isinstance(filename, str):
- # encode unicode to str in python 2
- if sys.version_info[0] < 3:
- self.filename = filename.encode()
- # decode bytes to str in python 3
- elif sys.version_info[0] >= 3:
- self.filename = filename.decode()
- else:
- self.filename = filename
-
- def __dealloc__(self):
- """Destructor: Calls SfClose(self.handle)"""
- #SfClose makes a segmentation fault if file failed to open
- if not self.__open_failed:
- if specfile_wrapper.SfClose(self.handle):
- _logger.warning("Error while closing SpecFile")
-
- def __len__(self):
- """Return the number of scans in the SpecFile
- """
- return specfile_wrapper.SfScanNo(self.handle)
-
- def __iter__(self):
- """Return the next :class:`Scan` in a SpecFile each time this method
- is called.
-
- This usually happens when the python built-in function ``next()`` is
- called with a :class:`SpecFile` instance as a parameter, or when a
- :class:`SpecFile` instance is used as an iterator (e.g. in a ``for``
- loop).
- """
- for scan_index in range(len(self)):
- yield Scan(self, scan_index)
-
- def __getitem__(self, key):
- """Return a :class:`Scan` object.
-
- This special method is called when a :class:`SpecFile` instance is
- accessed as a dictionary (e.g. ``sf[key]``).
-
- :param key: 0-based scan index or ``"n.m"`` key, where ``n`` is the scan
- number defined on the ``#S`` header line and ``m`` is the order
- :type key: int or str
-
- :return: Scan defined by its 0-based index or its ``"n.m"`` key
- :rtype: :class:`Scan`
- """
- msg = "The scan identification key can be an integer representing "
- msg += "the unique scan index or a string 'N.M' with N being the scan"
- msg += " number and M the order (eg '2.3')."
-
- if isinstance(key, int):
- scan_index = key
- # allow negative index, like lists
- if scan_index < 0:
- scan_index = len(self) + scan_index
- else:
- try:
- (number, order) = map(int, key.split("."))
- scan_index = self.index(number, order)
- except (ValueError, SfErrScanNotFound, KeyError):
- # int() can raise a value error
- raise KeyError(msg + "\nValid keys: '" +
- "', '".join( self.keys()) + "'")
- except AttributeError:
- # e.g. "AttrErr: 'float' object has no attribute 'split'"
- raise TypeError(msg)
-
- if not 0 <= scan_index < len(self):
- msg = "Scan index must be in range 0-%d" % (len(self) - 1)
- raise IndexError(msg)
-
- return Scan(self, scan_index)
-
- def keys(self):
- """Returns list of scan keys (eg ``['1.1', '2.1',...]``).
-
- :return: list of scan keys
- :rtype: list of strings
- """
- ret_list = []
- list_of_numbers = self._list()
- count = {}
-
- for number in list_of_numbers:
- if not number in count:
- count[number] = 1
- else:
- count[number] += 1
- ret_list.append(u'%d.%d' % (number, count[number]))
-
- return ret_list
-
- def __contains__(self, key):
- """Return ``True`` if ``key`` is a valid scan key.
- Valid keys can be a string such as ``"1.1"`` or a 0-based scan index.
- """
- return key in (self.keys() + list(range(len(self))))
-
- def _get_error_string(self, error_code):
- """Returns the error message corresponding to the error code.
-
- :param code: Error code
- :type code: int
- :return: Human readable error message
- :rtype: str
- """
- return (<bytes> specfile_wrapper.SfError(error_code)).decode()
-
- def _handle_error(self, error_code):
- """Inspect error code, raise adequate error type if necessary.
-
- :param code: Error code
- :type code: int
- """
- error_message = self._get_error_string(error_code)
- if error_code in ERRORS:
- raise ERRORS[error_code](error_message)
-
- def index(self, scan_number, scan_order=1):
- """Returns scan index from scan number and order.
-
- :param scan_number: Scan number (possibly non-unique).
- :type scan_number: int
- :param scan_order: Scan order.
- :type scan_order: int default 1
-
- :return: Unique scan index
- :rtype: int
-
-
- Scan indices are increasing from ``0`` to ``len(self)-1`` in the
- order in which they appear in the file.
- Scan numbers are defined by users and are not necessarily unique.
- The scan order for a given scan number increments each time the scan
- number appers in a given file.
- """
- idx = specfile_wrapper.SfIndex(self.handle, scan_number, scan_order)
- if idx == -1:
- self._handle_error(SF_ERR_SCAN_NOT_FOUND)
- return idx - 1
-
- def number(self, scan_index):
- """Returns scan number from scan index.
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
-
- :return: User defined scan number.
- :rtype: int
- """
- idx = specfile_wrapper.SfNumber(self.handle, scan_index + 1)
- if idx == -1:
- self._handle_error(SF_ERR_SCAN_NOT_FOUND)
- return idx
-
- def order(self, scan_index):
- """Returns scan order from scan index.
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
-
- :return: Scan order (sequential number incrementing each time a
- non-unique occurrence of a scan number is encountered).
- :rtype: int
- """
- ordr = specfile_wrapper.SfOrder(self.handle, scan_index + 1)
- if ordr == -1:
- self._handle_error(SF_ERR_SCAN_NOT_FOUND)
- return ordr
-
- def _list(self):
- """see documentation of :meth:`list`
- """
- cdef:
- long *scan_numbers
- int error = SF_ERR_NO_ERRORS
-
- scan_numbers = specfile_wrapper.SfList(self.handle, &error)
- self._handle_error(error)
-
- ret_list = []
- for i in range(len(self)):
- ret_list.append(scan_numbers[i])
-
- free(scan_numbers)
- return ret_list
-
- def list(self):
- """Returns list (1D numpy array) of scan numbers in SpecFile.
-
- :return: list of scan numbers (from `` #S`` lines) in the same order
- as in the original SpecFile (e.g ``[1, 1, 2, 3, …]``).
- :rtype: numpy array
- """
- # this method is overloaded in specfilewrapper to output a string
- # representation of the list
- return self._list()
-
- def data(self, scan_index):
- """Returns data for the specified scan index.
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
-
- :return: Complete scan data as a 2D array of doubles
- :rtype: numpy.ndarray
- """
- cdef:
- double** mydata
- long* data_info
- int i, j
- int error = SF_ERR_NO_ERRORS
- long nlines, ncolumns, regular
-
- sfdata_error = specfile_wrapper.SfData(self.handle,
- scan_index + 1,
- &mydata,
- &data_info,
- &error)
- self._handle_error(error)
-
- if <long>data_info != 0:
- nlines = data_info[0]
- ncolumns = data_info[1]
- regular = data_info[2]
- else:
- nlines = 0
- ncolumns = 0
- regular = 0
-
- cdef numpy.ndarray ret_array = numpy.empty((nlines, ncolumns),
- dtype=numpy.double)
- for i in range(nlines):
- for j in range(ncolumns):
- ret_array[i, j] = mydata[i][j]
-
- specfile_wrapper.freeArrNZ(<void ***>&mydata, nlines)
- free(data_info)
- return ret_array
-
- def data_column_by_name(self, scan_index, label):
- """Returns data column for the specified scan index and column label.
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
- :param label: Label of data column, as defined in the ``#L`` line
- of the scan header.
- :type label: str
-
- :return: Data column as a 1D array of doubles
- :rtype: numpy.ndarray
- """
- cdef:
- double* data_column
- long i, nlines
- int error = SF_ERR_NO_ERRORS
-
- label = _string_to_char_star(label)
-
- nlines = specfile_wrapper.SfDataColByName(self.handle,
- scan_index + 1,
- label,
- &data_column,
- &error)
- self._handle_error(error)
-
- cdef numpy.ndarray ret_array = numpy.empty((nlines,),
- dtype=numpy.double)
- for i in range(nlines):
- ret_array[i] = data_column[i]
-
- free(data_column)
- return ret_array
-
- def scan_header(self, scan_index):
- """Return list of scan header lines.
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
-
- :return: List of raw scan header lines
- :rtype: list of str
- """
- cdef:
- char** lines
- int error = SF_ERR_NO_ERRORS
-
- nlines = specfile_wrapper.SfHeader(self.handle,
- scan_index + 1,
- "", # no pattern matching
- &lines,
- &error)
-
- self._handle_error(error)
-
- lines_list = []
- for i in range(nlines):
- line = <bytes>lines[i].decode()
- lines_list.append(line)
-
- specfile_wrapper.freeArrNZ(<void***>&lines, nlines)
- return lines_list
-
- def file_header(self, scan_index=0):
- """Return list of file header lines.
-
- A file header contains all lines between a ``#F`` header line and
- a ``#S`` header line (start of scan). We need to specify a scan
- number because there can be more than one file header in a given file.
- A file header applies to all subsequent scans, until a new file
- header is defined.
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
-
- :return: List of raw file header lines
- :rtype: list of str
- """
- cdef:
- char** lines
- int error = SF_ERR_NO_ERRORS
-
- nlines = specfile_wrapper.SfFileHeader(self.handle,
- scan_index + 1,
- "", # no pattern matching
- &lines,
- &error)
- self._handle_error(error)
-
- lines_list = []
- for i in range(nlines):
- line = <bytes>lines[i].decode()
- lines_list.append(line)
-
- specfile_wrapper.freeArrNZ(<void***>&lines, nlines)
- return lines_list
-
- def columns(self, scan_index):
- """Return number of columns in a scan from the ``#N`` header line
- (without ``#N`` and scan number)
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
-
- :return: Number of columns in scan from ``#N`` line
- :rtype: int
- """
- cdef:
- int error = SF_ERR_NO_ERRORS
-
- ncolumns = specfile_wrapper.SfNoColumns(self.handle,
- scan_index + 1,
- &error)
- self._handle_error(error)
-
- return ncolumns
-
- def command(self, scan_index):
- """Return ``#S`` line (without ``#S`` and scan number)
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
-
- :return: S line
- :rtype: str
- """
- cdef:
- int error = SF_ERR_NO_ERRORS
-
- s_record = <bytes> specfile_wrapper.SfCommand(self.handle,
- scan_index + 1,
- &error)
- self._handle_error(error)
-
- return s_record.decode()
-
- def date(self, scan_index=0):
- """Return date from ``#D`` line
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
-
- :return: Date from ``#D`` line
- :rtype: str
- """
- cdef:
- int error = SF_ERR_NO_ERRORS
-
- d_line = <bytes> specfile_wrapper.SfDate(self.handle,
- scan_index + 1,
- &error)
- self._handle_error(error)
-
- return d_line.decode()
-
- def labels(self, scan_index):
- """Return all labels from ``#L`` line
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
-
- :return: All labels from ``#L`` line
- :rtype: list of strings
- """
- cdef:
- char** all_labels
- int error = SF_ERR_NO_ERRORS
-
- nlabels = specfile_wrapper.SfAllLabels(self.handle,
- scan_index + 1,
- &all_labels,
- &error)
- self._handle_error(error)
-
- labels_list = []
- for i in range(nlabels):
- labels_list.append(<bytes>all_labels[i].decode())
-
- specfile_wrapper.freeArrNZ(<void***>&all_labels, nlabels)
- return labels_list
-
- def motor_names(self, scan_index=0):
- """Return all motor names from ``#O`` lines
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.If not specified, defaults to 0 (meaning the
- function returns motors names associated with the first scan).
- This parameter makes a difference only if there are more than
- on file header in the file, in which case the file header applies
- to all following scans until a new file header appears.
- :type scan_index: int
-
- :return: All motor names
- :rtype: list of strings
- """
- cdef:
- char** all_motors
- int error = SF_ERR_NO_ERRORS
-
- nmotors = specfile_wrapper.SfAllMotors(self.handle,
- scan_index + 1,
- &all_motors,
- &error)
- self._handle_error(error)
-
- motors_list = []
- for i in range(nmotors):
- motors_list.append(<bytes>all_motors[i].decode())
-
- specfile_wrapper.freeArrNZ(<void***>&all_motors, nmotors)
- return motors_list
-
- def motor_positions(self, scan_index):
- """Return all motor positions
-
- :param scan_index: Unique scan index between ``0``
- and ``len(self)-1``.
- :type scan_index: int
-
- :return: All motor positions
- :rtype: list of double
- """
- cdef:
- double* motor_positions
- int error = SF_ERR_NO_ERRORS
-
- nmotors = specfile_wrapper.SfAllMotorPos(self.handle,
- scan_index + 1,
- &motor_positions,
- &error)
- self._handle_error(error)
-
- motor_positions_list = []
- for i in range(nmotors):
- motor_positions_list.append(motor_positions[i])
-
- free(motor_positions)
- return motor_positions_list
-
- def motor_position_by_name(self, scan_index, name):
- """Return motor position
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
-
- :return: Specified motor position
- :rtype: double
- """
- cdef:
- int error = SF_ERR_NO_ERRORS
-
- name = _string_to_char_star(name)
-
- motor_position = specfile_wrapper.SfMotorPosByName(self.handle,
- scan_index + 1,
- name,
- &error)
- self._handle_error(error)
-
- return motor_position
-
- def number_of_mca(self, scan_index):
- """Return number of mca spectra in a scan.
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
-
- :return: Number of mca spectra.
- :rtype: int
- """
- cdef:
- int error = SF_ERR_NO_ERRORS
-
- num_mca = specfile_wrapper.SfNoMca(self.handle,
- scan_index + 1,
- &error)
- # error code updating isn't implemented in SfNoMCA
- if num_mca == -1:
- raise SfNoMcaError("Failed to retrieve number of MCA " +
- "(SfNoMca returned -1)")
- return num_mca
-
- def mca_calibration(self, scan_index):
- """Return MCA calibration in the form :math:`a + b x + c x²`
-
- Raise a KeyError if there is no ``@CALIB`` line in the scan header.
-
- :param scan_index: Unique scan index between ``0`` and
- ``len(self)-1``.
- :type scan_index: int
-
- :return: MCA calibration as a list of 3 values :math:`(a, b, c)`
- :rtype: list of floats
- """
- cdef:
- int error = SF_ERR_NO_ERRORS
- double* mca_calib
-
- mca_calib_error = specfile_wrapper.SfMcaCalib(self.handle,
- scan_index + 1,
- &mca_calib,
- &error)
-
- # error code updating isn't implemented in SfMcaCalib
- if mca_calib_error:
- raise KeyError("MCA calibration line (@CALIB) not found")
-
- mca_calib_list = []
- for i in range(3):
- mca_calib_list.append(mca_calib[i])
-
- free(mca_calib)
- return mca_calib_list
-
- def get_mca(self, scan_index, mca_index):
- """Return one MCA spectrum
-
- :param scan_index: Unique scan index between ``0`` and ``len(self)-1``.
- :type scan_index: int
- :param mca_index: Index of MCA in the scan
- :type mca_index: int
-
- :return: MCA spectrum
- :rtype: 1D numpy array
- """
- cdef:
- int error = SF_ERR_NO_ERRORS
- double* mca_data
- long len_mca
-
- len_mca = specfile_wrapper.SfGetMca(self.handle,
- scan_index + 1,
- mca_index + 1,
- &mca_data,
- &error)
- self._handle_error(error)
-
-
- cdef numpy.ndarray ret_array = numpy.empty((len_mca,),
- dtype=numpy.double)
- for i in range(len_mca):
- ret_array[i] = mca_data[i]
-
- free(mca_data)
- return ret_array
diff --git a/silx/io/specfile/specfile_wrapper.pxd b/silx/io/specfile/specfile_wrapper.pxd
deleted file mode 100644
index 6770f7e..0000000
--- a/silx/io/specfile/specfile_wrapper.pxd
+++ /dev/null
@@ -1,77 +0,0 @@
-# coding: utf-8
-# /*##########################################################################
-# Copyright (C) 2016 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ############################################################################*/
-
-__authors__ = ["P. Knobel"]
-__license__ = "MIT"
-__date__ = "17/03/2016"
-
-cimport cython
-
-cdef extern from "SpecFileCython.h":
- struct _SpecFile:
- pass
-# Renaming struct because we have too many SpecFile items (files, classes…)
-ctypedef _SpecFile SpecFileHandle
-
-cdef extern from "SpecFileCython.h":
- # sfinit
- SpecFileHandle* SfOpen(char*, int*)
- int SfClose(SpecFileHandle*)
- char* SfError(int)
-
- # sfindex
- long* SfList(SpecFileHandle*, int*)
- long SfScanNo(SpecFileHandle*)
- long SfIndex(SpecFileHandle*, long, long)
- long SfNumber(SpecFileHandle*, long)
- long SfOrder(SpecFileHandle*, long)
-
- # sfdata
- int SfData(SpecFileHandle*, long, double***, long**, int*)
- long SfDataLine(SpecFileHandle*, long, long, double**, int*)
- long SfDataColByName(SpecFileHandle*, long, char*, double**, int*)
-
- # sfheader
- #char* SfTitle(SpecFileHandle*, long, int*)
- long SfHeader(SpecFileHandle*, long, char*, char***, int*)
- long SfFileHeader(SpecFileHandle*, long, char*, char***, int*)
- char* SfCommand(SpecFileHandle*, long, int*)
- long SfNoColumns(SpecFileHandle*, long, int*)
- char* SfDate(SpecFileHandle*, long, int*)
-
- # sflabel
- long SfAllLabels(SpecFileHandle*, long, char***, int*)
- char* SfLabel(SpecFileHandle*, long, long, int *)
- long SfAllMotors(SpecFileHandle*, long, char***, int*)
- long SfAllMotorPos(SpecFileHandle*, long, double**, int*)
- double SfMotorPosByName(SpecFileHandle*, long, char*, int*)
-
- # sftools
- void freeArrNZ(void***, long)
-
- # sfmca
- long SfNoMca(SpecFileHandle*, long, int*)
- int SfGetMca(SpecFileHandle*, long, long , double**, int*)
- long SfMcaCalib(SpecFileHandle*, long, double**, int*)
-
diff --git a/silx/io/specfile/src/locale_management.c b/silx/io/specfile/src/locale_management.c
index 1e6a196..163ed75 100644
--- a/silx/io/specfile/src/locale_management.c
+++ b/silx/io/specfile/src/locale_management.c
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2012-2013 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 2012-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
#include <locale_management.h>
#include <stdlib.h>
diff --git a/silx/io/specfile/src/sfdata.c b/silx/io/specfile/src/sfdata.c
index 229f4e6..e59439a 100644
--- a/silx/io/specfile/src/sfdata.c
+++ b/silx/io/specfile/src/sfdata.c
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2004-2014 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 1995-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
/************************************************************************
*
* File: sfdata.c
diff --git a/silx/io/specfile/src/sfheader.c b/silx/io/specfile/src/sfheader.c
index 424eb08..b669e33 100644
--- a/silx/io/specfile/src/sfheader.c
+++ b/silx/io/specfile/src/sfheader.c
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2004-2016 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 1995-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
/************************************************************************
*
* File: sfheader.c
diff --git a/silx/io/specfile/src/sfindex.c b/silx/io/specfile/src/sfindex.c
index fd0c7c3..320b086 100644
--- a/silx/io/specfile/src/sfindex.c
+++ b/silx/io/specfile/src/sfindex.c
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2004-2013 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 1995-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
/************************************************************************
*
* File: sfindex.c
diff --git a/silx/io/specfile/src/sfinit.c b/silx/io/specfile/src/sfinit.c
index 6f88078..7291427 100644
--- a/silx/io/specfile/src/sfinit.c
+++ b/silx/io/specfile/src/sfinit.c
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2004-2013 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 1995-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
/************************************************************************
*
* File: sfinit.c
diff --git a/silx/io/specfile/src/sflabel.c b/silx/io/specfile/src/sflabel.c
index 70af965..70d2e95 100644
--- a/silx/io/specfile/src/sflabel.c
+++ b/silx/io/specfile/src/sflabel.c
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2004-2014 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 1995-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
/************************************************************************
*
* File: sflabel.c
diff --git a/silx/io/specfile/src/sflists.c b/silx/io/specfile/src/sflists.c
index 3fcb9a7..aca267f 100644
--- a/silx/io/specfile/src/sflists.c
+++ b/silx/io/specfile/src/sflists.c
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2004-2013 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 1995-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
/************************************************************************
*
* File: sflists.c
diff --git a/silx/io/specfile/src/sfmca.c b/silx/io/specfile/src/sfmca.c
index 22d1958..ad13bae 100644
--- a/silx/io/specfile/src/sfmca.c
+++ b/silx/io/specfile/src/sfmca.c
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2004-2014 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 2000-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
/************************************************************************
*
* File: sfmca.c
diff --git a/silx/io/specfile/src/sftools.c b/silx/io/specfile/src/sftools.c
index 74ae311..d113d05 100644
--- a/silx/io/specfile/src/sftools.c
+++ b/silx/io/specfile/src/sftools.c
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2004-2016 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 1995-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
/************************************************************************
*
* File: sftools.c
diff --git a/silx/io/specfile/src/sfwrite.c b/silx/io/specfile/src/sfwrite.c
index 4422ae0..c77f400 100644
--- a/silx/io/specfile/src/sfwrite.c
+++ b/silx/io/specfile/src/sfwrite.c
@@ -1,20 +1,25 @@
-#/*##########################################################################
-# Copyright (C) 2004-2013 European Synchrotron Radiation Facility
+# /*##########################################################################
+# Copyright (C) 1995-2017 European Synchrotron Radiation Facility
#
-# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
-# the ESRF by the Software group.
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
#
-# This file is free software; you can redistribute it and/or modify it
-# under the terms of the GNU Lesser General Public License as published by the Free
-# Software Foundation; either version 2 of the License, or (at your option)
-# any later version.
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
#
-# This file is distributed in the hope that it will be useful, but WITHOUT ANY
-# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more
-# details.
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
#
-#############################################################################*/
+# ############################################################################*/
/************************************************************************
*
* File: sfwrite.c
generated by cgit v1.2.3 (git 2.25.1) at 2024-04-16 11:13:30 +0000