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Diffstat (limited to 'silx/io/test/test_spectoh5.py')
| -rw-r--r-- | silx/io/test/test_spectoh5.py | 194 |
1 files changed, 0 insertions, 194 deletions
diff --git a/silx/io/test/test_spectoh5.py b/silx/io/test/test_spectoh5.py deleted file mode 100644 index 903a62c..0000000 --- a/silx/io/test/test_spectoh5.py +++ /dev/null @@ -1,194 +0,0 @@ -# coding: utf-8 -# /*########################################################################## -# Copyright (C) 2016-2019 European Synchrotron Radiation Facility -# -# Permission is hereby granted, free of charge, to any person obtaining a copy -# of this software and associated documentation files (the "Software"), to deal -# in the Software without restriction, including without limitation the rights -# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell -# copies of the Software, and to permit persons to whom the Software is -# furnished to do so, subject to the following conditions: -# -# The above copyright notice and this permission notice shall be included in -# all copies or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN -# THE SOFTWARE. -# -# ############################################################################*/ -"""Tests for SpecFile to HDF5 converter""" - -from numpy import array_equal -import os -import sys -import tempfile -import unittest - -import h5py - -from ..spech5 import SpecH5, SpecH5Group -from ..convert import convert, write_to_h5 -from ..utils import h5py_read_dataset - -__authors__ = ["P. Knobel"] -__license__ = "MIT" -__date__ = "12/02/2018" - - -sfdata = b"""#F /tmp/sf.dat -#E 1455180875 -#D Thu Feb 11 09:54:35 2016 -#C imaging User = opid17 -#O0 Pslit HGap MRTSlit UP MRTSlit DOWN -#O1 Sslit1 VOff Sslit1 HOff Sslit1 VGap -#o0 pshg mrtu mrtd -#o2 ss1vo ss1ho ss1vg - -#J0 Seconds IA ion.mono Current -#J1 xbpmc2 idgap1 Inorm - -#S 1 ascan ss1vo -4.55687 -0.556875 40 0.2 -#D Thu Feb 11 09:55:20 2016 -#T 0.2 (Seconds) -#P0 180.005 -0.66875 0.87125 -#P1 14.74255 16.197579 12.238283 -#N 4 -#L MRTSlit UP second column 3rd_col --1.23 5.89 8 -8.478100E+01 5 1.56 -3.14 2.73 -3.14 -1.2 2.3 3.4 - -#S 1 aaaaaa -#D Thu Feb 11 10:00:32 2016 -#@MCADEV 1 -#@MCA %16C -#@CHANN 3 0 2 1 -#@CALIB 1 2 3 -#N 3 -#L uno duo -1 2 -@A 0 1 2 -@A 10 9 8 -3 4 -@A 3.1 4 5 -@A 7 6 5 -5 6 -@A 6 7.7 8 -@A 4 3 2 -""" - - -class TestConvertSpecHDF5(unittest.TestCase): - @classmethod - def setUpClass(cls): - fd, cls.spec_fname = tempfile.mkstemp(prefix="TestConvertSpecHDF5") - os.write(fd, sfdata) - os.close(fd) - - fd, cls.h5_fname = tempfile.mkstemp(prefix="TestConvertSpecHDF5") - # Close and delete (we just need the name) - os.close(fd) - os.unlink(cls.h5_fname) - - @classmethod - def tearDownClass(cls): - os.unlink(cls.spec_fname) - - def setUp(self): - convert(self.spec_fname, self.h5_fname) - - self.sfh5 = SpecH5(self.spec_fname) - self.h5f = h5py.File(self.h5_fname, "a") - - def tearDown(self): - self.h5f.close() - self.sfh5.close() - os.unlink(self.h5_fname) - - def testAppendToHDF5(self): - write_to_h5(self.sfh5, self.h5f, h5path="/foo/bar/spam") - self.assertTrue( - array_equal(self.h5f["/1.2/measurement/mca_1/data"], - self.h5f["/foo/bar/spam/1.2/measurement/mca_1/data"]) - ) - - def testWriteSpecH5Group(self): - """Test passing a SpecH5Group as parameter, instead of a Spec filename - or a SpecH5.""" - g = self.sfh5["1.1/instrument"] - self.assertIsInstance(g, SpecH5Group) # let's be paranoid - write_to_h5(g, self.h5f, h5path="my instruments") - - self.assertAlmostEqual(self.h5f["my instruments/positioners/Sslit1 HOff"][tuple()], - 16.197579, places=4) - - def testTitle(self): - """Test the value of a dataset""" - title12 = h5py_read_dataset(self.h5f["/1.2/title"]) - self.assertEqual(title12, - u"aaaaaa") - - def testAttrs(self): - # Test root group (file) attributes - self.assertEqual(self.h5f.attrs["NX_class"], - u"NXroot") - # Test dataset attributes - ds = self.h5f["/1.2/instrument/mca_1/data"] - self.assertTrue("interpretation" in ds.attrs) - self.assertEqual(list(ds.attrs.values()), - [u"spectrum"]) - # Test group attributes - grp = self.h5f["1.1"] - self.assertEqual(grp.attrs["NX_class"], - u"NXentry") - self.assertEqual(len(list(grp.attrs.keys())), - 1) - - def testHdf5HasSameMembers(self): - spec_member_list = [] - - def append_spec_members(name): - spec_member_list.append(name) - self.sfh5.visit(append_spec_members) - - hdf5_member_list = [] - - def append_hdf5_members(name): - hdf5_member_list.append(name) - self.h5f.visit(append_hdf5_members) - - # 1. For some reason, h5py visit method doesn't include the leading - # "/" character when it passes the member name to the function, - # even though an explicit the .name attribute of a member will - # have a leading "/" - spec_member_list = [m.lstrip("/") for m in spec_member_list] - - self.assertEqual(set(hdf5_member_list), - set(spec_member_list)) - - def testLinks(self): - self.assertTrue( - array_equal(self.sfh5["/1.2/measurement/mca_0/data"], - self.h5f["/1.2/measurement/mca_0/data"]) - ) - self.assertTrue( - array_equal(self.h5f["/1.2/instrument/mca_1/channels"], - self.h5f["/1.2/measurement/mca_1/info/channels"]) - ) - - -def suite(): - test_suite = unittest.TestSuite() - test_suite.addTest( - unittest.defaultTestLoader.loadTestsFromTestCase(TestConvertSpecHDF5)) - return test_suite - - -if __name__ == '__main__': - unittest.main(defaultTest="suite") |