diff options
Diffstat (limited to 'silx/io')
-rw-r--r-- | silx/io/__init__.py | 9 | ||||
-rw-r--r-- | silx/io/commonh5.py | 103 | ||||
-rw-r--r-- | silx/io/convert.py | 27 | ||||
-rw-r--r-- | silx/io/fabioh5.py | 81 | ||||
-rw-r--r-- | silx/io/nxdata/__init__.py | 64 | ||||
-rw-r--r-- | silx/io/nxdata/_utils.py | 183 | ||||
-rw-r--r-- | silx/io/nxdata/parse.py (renamed from silx/io/nxdata.py) | 795 | ||||
-rw-r--r-- | silx/io/nxdata/write.py | 202 | ||||
-rw-r--r-- | silx/io/setup.py | 7 | ||||
-rw-r--r-- | silx/io/specfile.c | 32121 | ||||
-rw-r--r-- | silx/io/specfile.pyx | 50 | ||||
-rw-r--r-- | silx/io/spech5.py | 2 | ||||
-rw-r--r-- | silx/io/test/test_fabioh5.py | 26 | ||||
-rw-r--r-- | silx/io/test/test_nxdata.py | 16 | ||||
-rw-r--r-- | silx/io/utils.py | 6 |
15 files changed, 25788 insertions, 7904 deletions
diff --git a/silx/io/__init__.py b/silx/io/__init__.py index 5e736b5..b43d290 100644 --- a/silx/io/__init__.py +++ b/silx/io/__init__.py @@ -1,7 +1,7 @@ # coding: utf-8 # /*########################################################################## # -# Copyright (c) 2016-2017 European Synchrotron Radiation Facility +# Copyright (c) 2016-2018 European Synchrotron Radiation Facility # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal @@ -22,7 +22,12 @@ # THE SOFTWARE. # # ###########################################################################*/ -"""I/O modules""" +"""This package provides functionalities to read and write data files. + +It is geared towards support of and conversion to HDF5/NeXus. + +See silx documentation: http://www.silx.org/doc/silx/latest/ +""" __authors__ = ["P. Knobel"] __license__ = "MIT" diff --git a/silx/io/commonh5.py b/silx/io/commonh5.py index 4fbcd08..4b2d8c3 100644 --- a/silx/io/commonh5.py +++ b/silx/io/commonh5.py @@ -34,11 +34,11 @@ import numpy from silx.third_party import six import weakref -from .utils import is_dataset +from . import utils __authors__ = ["V. Valls", "P. Knobel"] __license__ = "MIT" -__date__ = "11/10/2017" +__date__ = "02/07/2018" class _MappingProxyType(collections.MutableMapping): @@ -101,12 +101,31 @@ class Node(object): self.__basename = name @property + def h5_class(self): + """Returns the HDF5 class which is mimicked by this class. + + :rtype: H5Type + """ + raise NotImplementedError() + + @property def h5py_class(self): """Returns the h5py classes which is mimicked by this class. It can be one of `h5py.File, h5py.Group` or `h5py.Dataset` + This should not be used anymore. Prefer using `h5_class` + :rtype: Class """ + h5_class = self.h5_class + if h5_class == utils.H5Type.FILE: + return h5py.File + elif h5_class == utils.H5Type.GROUP: + return h5py.Group + elif h5_class == utils.H5Type.DATASET: + return h5py.Dataset + elif h5_class == utils.H5Type.SOFT_LINK: + return h5py.SoftLink raise NotImplementedError() @property @@ -244,13 +263,12 @@ class Dataset(Node): return self.__data @property - def h5py_class(self): - """Returns the h5py classes which is mimicked by this class. It can be - one of `h5py.File, h5py.Group` or `h5py.Dataset` + def h5_class(self): + """Returns the HDF5 class which is mimicked by this class. - :rtype: Class + :rtype: H5Type """ - return h5py.Dataset + return utils.H5Type.DATASET @property def dtype(self): @@ -369,7 +387,7 @@ class Dataset(Node): # make comparisons and operations on the data def __eq__(self, other): """When comparing datasets, compare the actual data.""" - if is_dataset(other): + if utils.is_dataset(other): return self[()] == other[()] return self[()] == other @@ -425,31 +443,31 @@ class Dataset(Node): return self.__bool__() def __ne__(self, other): - if is_dataset(other): + if utils.is_dataset(other): return self[()] != other[()] else: return self[()] != other def __lt__(self, other): - if is_dataset(other): + if utils.is_dataset(other): return self[()] < other[()] else: return self[()] < other def __le__(self, other): - if is_dataset(other): + if utils.is_dataset(other): return self[()] <= other[()] else: return self[()] <= other def __gt__(self, other): - if is_dataset(other): + if utils.is_dataset(other): return self[()] > other[()] else: return self[()] > other def __ge__(self, other): - if is_dataset(other): + if utils.is_dataset(other): return self[()] >= other[()] else: return self[()] >= other @@ -464,6 +482,35 @@ class Dataset(Node): raise AttributeError("Dataset has no attribute %s" % item) +class DatasetProxy(Dataset): + """Virtual dataset providing content of another dataset""" + + def __init__(self, name, target, parent=None): + Dataset.__init__(self, name, data=None, parent=parent) + if not utils.is_dataset(target): + raise TypeError("A Dataset is expected but %s found", target.__class__) + self.__target = target + + @property + def shape(self): + return self.__target.shape + + @property + def size(self): + return self.__target.size + + @property + def dtype(self): + return self.__target.dtype + + def _get_data(self): + return self.__target[...] + + @property + def attrs(self): + return self.__target.attrs + + class _LinkToDataset(Dataset): """Virtual dataset providing link to another dataset""" @@ -532,13 +579,12 @@ class SoftLink(Node): self.target = str(path) @property - def h5py_class(self): - """Returns the h5py class which is mimicked by this class - (:class:`h5py.SoftLink`). + def h5_class(self): + """Returns the HDF5 class which is mimicked by this class. - :rtype: Class + :rtype: H5Type """ - return h5py.SoftLink + return utils.H5Type.SOFT_LINK @property def path(self): @@ -569,14 +615,12 @@ class Group(Node): node._set_parent(self) @property - def h5py_class(self): - """Returns the h5py classes which is mimicked by this class. + def h5_class(self): + """Returns the HDF5 class which is mimicked by this class. - It returns `h5py.Group` - - :rtype: Class + :rtype: H5Type """ - return h5py.Group + return utils.H5Type.GROUP def _get(self, name, getlink): """If getlink is True and name points to an existing SoftLink, this @@ -654,9 +698,8 @@ class Group(Node): node = h5py.HardLink() if getclass: - if hasattr(node, "h5py_class"): - obj = node.h5py_class - else: + obj = utils.get_h5py_class(node) + if obj is None: obj = node.__class__ else: obj = node @@ -754,7 +797,7 @@ class Group(Node): if node is None: # broken link return False - if node.h5py_class == h5py.Dataset: + if utils.is_dataset(node): return False continue if basename not in node._get_items(): @@ -1000,9 +1043,9 @@ class File(Group): return self._mode @property - def h5py_class(self): + def h5_class(self): """Returns the :class:`h5py.File` class""" - return h5py.File + return utils.H5Type.FILE def __enter__(self): return self diff --git a/silx/io/convert.py b/silx/io/convert.py index a2639e6..e9cbd2d 100644 --- a/silx/io/convert.py +++ b/silx/io/convert.py @@ -57,6 +57,10 @@ import numpy import silx.io from silx.io import is_dataset, is_group, is_softlink from silx.third_party import six +try: + from silx.io import fabioh5 +except ImportError: + fabioh5 = None __authors__ = ["P. Knobel"] __license__ = "MIT" @@ -197,7 +201,6 @@ class Hdf5Writer(object): def append_member_to_h5(self, h5like_name, obj): """Add one group or one dataset to :attr:`h5f`""" h5_name = self.h5path + h5like_name.lstrip("/") - if is_softlink(obj): # links to be created after all groups and datasets h5_target = self.h5path + obj.path.lstrip("/") @@ -213,12 +216,24 @@ class Hdf5Writer(object): del self._h5f[h5_name] if self.overwrite_data or not member_initially_exists: - # fancy arguments don't apply to small dataset - if obj.size < self.min_size: - ds = self._h5f.create_dataset(h5_name, data=obj.value) - else: - ds = self._h5f.create_dataset(h5_name, data=obj.value, + if fabioh5 is not None and \ + isinstance(obj, fabioh5.FrameData) and \ + len(obj.shape) > 2: + # special case of multiframe data + # write frame by frame to save memory usage low + ds = self._h5f.create_dataset(h5_name, + shape=obj.shape, + dtype=obj.dtype, **self.create_dataset_args) + for i, frame in enumerate(obj): + ds[i] = frame + else: + # fancy arguments don't apply to small dataset + if obj.size < self.min_size: + ds = self._h5f.create_dataset(h5_name, data=obj.value) + else: + ds = self._h5f.create_dataset(h5_name, data=obj.value, + **self.create_dataset_args) else: ds = self._h5f[h5_name] diff --git a/silx/io/fabioh5.py b/silx/io/fabioh5.py index 95eef23..0811ae0 100644 --- a/silx/io/fabioh5.py +++ b/silx/io/fabioh5.py @@ -44,6 +44,7 @@ import numpy from . import commonh5 from silx.third_party import six from silx import version as silx_version +import silx.utils.number try: import h5py @@ -106,11 +107,54 @@ class FrameData(commonh5.LazyLoadableDataset): attrs = {"interpretation": "image"} commonh5.LazyLoadableDataset.__init__(self, name, parent, attrs=attrs) self.__fabio_reader = fabio_reader - + self._shape = None + self._dtype = None def _create_data(self): return self.__fabio_reader.get_data() + def _update_cache(self): + if isinstance(self.__fabio_reader.fabio_file(), + fabio.file_series.file_series): + # Reading all the files is taking too much time + # Reach the information from the only first frame + first_image = self.__fabio_reader.fabio_file().first_image() + self._dtype = first_image.data.dtype + shape0 = self.__fabio_reader.frame_count() + shape1, shape2 = first_image.data.shape + self._shape = shape0, shape1, shape2 + else: + self._dtype = super(commonh5.LazyLoadableDataset, self).dtype + self._shape = super(commonh5.LazyLoadableDataset, self).shape + + @property + def dtype(self): + if self._dtype is None: + self._update_cache() + return self._dtype + + @property + def shape(self): + if self._shape is None: + self._update_cache() + return self._shape + + def __iter__(self): + for frame in self.__fabio_reader.iter_frames(): + yield frame.data + + def __getitem__(self, item): + # optimization for fetching a single frame if data not already loaded + if not self._is_initialized: + if isinstance(item, six.integer_types) and \ + isinstance(self.__fabio_reader.fabio_file(), + fabio.file_series.file_series): + if item < 0: + # negative indexing + item += len(self) + return self.__fabio_reader.fabio_file().jump_image(item).data + return super(FrameData, self).__getitem__(item) + class RawHeaderData(commonh5.LazyLoadableDataset): """Lazy loadable raw header""" @@ -638,30 +682,11 @@ class FabioReader(object): If it is not possible it returns a numpy string. """ try: - value = int(value) - dtype = numpy.min_scalar_type(value) - assert dtype.kind != "O" - return dtype.type(value) + numpy_type = silx.utils.number.min_numerical_convertible_type(value) + converted = numpy_type(value) except ValueError: - try: - # numpy.min_scalar_type is not able to do very well the job - # when there is a lot of digit after the dot - # https://github.com/numpy/numpy/issues/8207 - # Let's count the digit of the string - digits = len(value) - 1 # minus the dot - if digits <= 7: - # A float32 is accurate with about 7 digits - return numpy.float32(value) - elif digits <= 16: - # A float64 is accurate with about 16 digits - return numpy.float64(value) - else: - if hasattr(numpy, "float128"): - return numpy.float128(value) - else: - return numpy.float64(value) - except ValueError: - return numpy.string_(value) + converted = numpy.string_(value) + return converted def _convert_list(self, value): """Convert a string into a typed numpy array. @@ -951,7 +976,13 @@ class File(commonh5.File): if first_file_name is not None: _, ext = os.path.splitext(first_file_name) ext = ext[1:] - use_edf_reader = ext in fabio.edfimage.EdfImage.DEFAULT_EXTENSIONS + edfimage = fabio.edfimage.EdfImage + if hasattr(edfimage, "DEFAULT_EXTENTIONS"): + # Typo on fabio 0.5 + edf_extensions = edfimage.DEFAULT_EXTENTIONS + else: + edf_extensions = edfimage.DEFAULT_EXTENSIONS + use_edf_reader = ext in edf_extensions elif first_image is not None: use_edf_reader = isinstance(first_image, fabio.edfimage.EdfImage) else: diff --git a/silx/io/nxdata/__init__.py b/silx/io/nxdata/__init__.py new file mode 100644 index 0000000..796810f --- /dev/null +++ b/silx/io/nxdata/__init__.py @@ -0,0 +1,64 @@ +# coding: utf-8 +# /*########################################################################## +# +# Copyright (c) 2018 European Synchrotron Radiation Facility +# +# Permission is hereby granted, free of charge, to any person obtaining a copy +# of this software and associated documentation files (the "Software"), to deal +# in the Software without restriction, including without limitation the rights +# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the Software is +# furnished to do so, subject to the following conditions: +# +# The above copyright notice and this permission notice shall be included in +# all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +# THE SOFTWARE. +# +# ###########################################################################*/ +""" +:mod:`nxdata`: NXdata parsing and validation +-------------------------------------------- + +To parse an existing NXdata group, use :class:`NXdata`. + +Following functions help you check the validity of a existing NXdata group: + - :func:`is_valid_nxdata` + - :func:`is_NXentry_with_default_NXdata` + - :func:`is_NXroot_with_default_NXdata` + +To help you write a NXdata group, you can use :func:`save_NXdata`. + +.. currentmodule:: silx.io.nxdata + +Classes ++++++++ + +.. autoclass:: NXdata + :members: + + +Functions ++++++++++ + +.. autofunction:: get_default + +.. autofunction:: is_valid_nxdata + +.. autofunction:: is_NXentry_with_default_NXdata + +.. autofunction:: is_NXroot_with_default_NXdata + +.. autofunction:: save_NXdata + +""" +from .parse import NXdata, get_default, is_valid_nxdata, InvalidNXdataError, \ + is_NXentry_with_default_NXdata, is_NXroot_with_default_NXdata +from ._utils import get_attr_as_unicode, get_attr_as_string, nxdata_logger +from .write import save_NXdata diff --git a/silx/io/nxdata/_utils.py b/silx/io/nxdata/_utils.py new file mode 100644 index 0000000..077f01d --- /dev/null +++ b/silx/io/nxdata/_utils.py @@ -0,0 +1,183 @@ +# coding: utf-8 +# /*########################################################################## +# +# Copyright (c) 2017-2018 European Synchrotron Radiation Facility +# +# Permission is hereby granted, free of charge, to any person obtaining a copy +# of this software and associated documentation files (the "Software"), to deal +# in the Software without restriction, including without limitation the rights +# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the Software is +# furnished to do so, subject to the following conditions: +# +# The above copyright notice and this permission notice shall be included in +# all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +# THE SOFTWARE. +# +# ###########################################################################*/ +"""Utility functions used by NXdata validation and parsing.""" + +import copy +import numpy +import logging + +from silx.io import is_dataset +from silx.utils.deprecation import deprecated +from silx.third_party import six + + +__authors__ = ["P. Knobel"] +__license__ = "MIT" +__date__ = "17/04/2018" + + +nxdata_logger = logging.getLogger("silx.io.nxdata") + + +INTERPDIM = {"scalar": 0, + "spectrum": 1, + "image": 2, + "rgba-image": 3, # "hsla-image": 3, "cmyk-image": 3, # TODO + "vertex": 1} # 3D scatter: 1D signal + 3 axes (x, y, z) of same legth +"""Number of signal dimensions associated to each possible @interpretation +attribute. +""" + + +@deprecated(since_version="0.8.0", replacement="get_attr_as_unicode") +def get_attr_as_string(*args, **kwargs): + return get_attr_as_unicode(*args, **kwargs) + + +def get_attr_as_unicode(item, attr_name, default=None): + """Return item.attrs[attr_name] as unicode or as a + list of unicode. + + Numpy arrays of strings or bytes returned by h5py are converted to + lists of unicode. + + :param item: Group or dataset + :param attr_name: Attribute name + :param default: Value to be returned if attribute is not found. + :return: item.attrs[attr_name] + """ + attr = item.attrs.get(attr_name, default) + + if isinstance(attr, six.binary_type): + # byte-string + return attr.decode("utf-8") + elif isinstance(attr, numpy.ndarray) and not attr.shape: + if isinstance(attr[()], six.binary_type): + # byte string as ndarray scalar + return attr[()].decode("utf-8") + else: + # other scalar, possibly unicode + return attr[()] + elif isinstance(attr, numpy.ndarray) and len(attr.shape): + if hasattr(attr[0], "decode"): + # array of byte-strings + return [element.decode("utf-8") for element in attr] + else: + # other array, most likely unicode objects + return [element for element in attr] + else: + return copy.deepcopy(attr) + + +def get_uncertainties_names(group, signal_name): + # Test consistency of @uncertainties + uncertainties_names = get_attr_as_unicode(group, "uncertainties") + if uncertainties_names is None: + uncertainties_names = get_attr_as_unicode(group[signal_name], "uncertainties") + if isinstance(uncertainties_names, six.text_type): + uncertainties_names = [uncertainties_names] + return uncertainties_names + + +def get_signal_name(group): + """Return the name of the (main) signal in a NXdata group. + Return None if this info is missing (invalid NXdata). + + """ + signal_name = get_attr_as_unicode(group, "signal", default=None) + if signal_name is None: + nxdata_logger.info("NXdata group %s does not define a signal attr. " + "Testing legacy specification.", group.name) + for key in group: + if "signal" in group[key].attrs: + signal_name = key + signal_attr = group[key].attrs["signal"] + if signal_attr in [1, b"1", u"1"]: + # This is the main (default) signal + break + return signal_name + + +def get_auxiliary_signals_names(group): + """Return list of auxiliary signals names""" + auxiliary_signals_names = get_attr_as_unicode(group, "auxiliary_signals", + default=[]) + if isinstance(auxiliary_signals_names, (six.text_type, six.binary_type)): + auxiliary_signals_names = [auxiliary_signals_names] + return auxiliary_signals_names + + +def validate_auxiliary_signals(group, signal_name, auxiliary_signals_names): + """Check data dimensionality and size. Return False if invalid.""" + issues = [] + for asn in auxiliary_signals_names: + if asn not in group or not is_dataset(group[asn]): + issues.append( + "Cannot find auxiliary signal dataset '%s'" % asn) + elif group[signal_name].shape != group[asn].shape: + issues.append("Auxiliary signal dataset '%s' does not" % asn + + " have the same shape as the main signal.") + return issues + + +def validate_number_of_axes(group, signal_name, num_axes): + issues = [] + ndims = len(group[signal_name].shape) + if 1 < ndims < num_axes: + # ndim = 1 with several axes could be a scatter + issues.append( + "More @axes defined than there are " + + "signal dimensions: " + + "%d axes, %d dimensions." % (num_axes, ndims)) + + # case of less axes than dimensions: number of axes must match + # dimensionality defined by @interpretation + elif ndims > num_axes: + interpretation = get_attr_as_unicode(group[signal_name], "interpretation") + if interpretation is None: + interpretation = get_attr_as_unicode(group, "interpretation") + if interpretation is None: + issues.append("No @interpretation and not enough" + + " @axes defined.") + + elif interpretation not in INTERPDIM: + issues.append("Unrecognized @interpretation=" + interpretation + + " for data with wrong number of defined @axes.") + elif interpretation == "rgba-image": + if ndims != 3 or group[signal_name].shape[-1] not in [3, 4]: + issues.append( + "Inconsistent RGBA Image. Expected 3 dimensions with " + + "last one of length 3 or 4. Got ndim=%d " % ndims + + "with last dimension of length %d." % group[signal_name].shape[-1]) + if num_axes != 2: + issues.append( + "Inconsistent number of axes for RGBA Image. Expected " + "3, but got %d." % ndims) + + elif num_axes != INTERPDIM[interpretation]: + issues.append( + "%d-D signal with @interpretation=%s " % (ndims, interpretation) + + "must define %d or %d axes." % (ndims, INTERPDIM[interpretation])) + return issues diff --git a/silx/io/nxdata.py b/silx/io/nxdata/parse.py index cc153b0..daf1b2e 100644 --- a/silx/io/nxdata.py +++ b/silx/io/nxdata/parse.py @@ -22,351 +22,237 @@ # THE SOFTWARE. # # ###########################################################################*/ -"""This module provides a collection of functions to work with h5py-like +"""This package provides a collection of functions to work with h5py-like groups following the NeXus *NXdata* specification. See http://download.nexusformat.org/sphinx/classes/base_classes/NXdata.html -""" -import logging -import os -import os.path -import numpy -from .utils import is_dataset, is_group, is_file -from silx.third_party import six +The main class is :class:`NXdata`. +You can also fetch the default NXdata in a NXroot or a NXentry with function +:func:`get_default`. -try: - import h5py -except ImportError: - h5py = None -__authors__ = ["P. Knobel"] -__license__ = "MIT" -__date__ = "12/02/2018" +Other public functions: -_logger = logging.getLogger(__name__) + - :func:`is_valid_nxdata` + - :func:`is_NXroot_with_default_NXdata` + - :func:`is_NXentry_with_default_NXdata` - -_INTERPDIM = {"scalar": 0, - "spectrum": 1, - "image": 2, - "rgba-image": 3, # "hsla-image": 3, "cmyk-image": 3, # TODO - "vertex": 1} # 3D scatter: 1D signal + 3 axes (x, y, z) of same legth -"""Number of signal dimensions associated to each possible @interpretation -attribute. """ +import numpy +from silx.io.utils import is_group, is_file, is_dataset -def _nxdata_warning(msg, group_name=""): - """Log a warning message prefixed with - *"NXdata warning: "* - - :param str msg: Warning message - :param str group_name: Name of NXdata group this warning relates to - """ - warning_prefix = "NXdata warning" - if group_name: - warning_prefix += " (group %s): " % group_name - else: - warning_prefix += ": " - _logger.warning(warning_prefix + msg) +from ._utils import get_attr_as_unicode, INTERPDIM, nxdata_logger, \ + get_uncertainties_names, get_signal_name, \ + get_auxiliary_signals_names, validate_auxiliary_signals, validate_number_of_axes +from silx.third_party import six -def get_attr_as_string(item, attr_name, default=None): - """Return item.attrs[attr_name]. If it is a byte-string or an array of - byte-strings, return it as a default python string. +__authors__ = ["P. Knobel"] +__license__ = "MIT" +__date__ = "17/04/2018" - For Python 3, this involves a coercion from bytes into unicode. - For Python 2, there is nothing special to do, as strings are bytes. - :param item: Group or dataset - :param attr_name: Attribute name - :param default: Value to be returned if attribute is not found. - :return: item.attrs[attr_name] - """ - attr = item.attrs.get(attr_name, default) - if six.PY2: - if isinstance(attr, six.text_type): - # unicode - return attr.encode("utf-8") - else: - return attr - if six.PY3: - if hasattr(attr, "decode"): - # byte-string - return attr.decode("utf-8") - elif isinstance(attr, numpy.ndarray) and not attr.shape and\ - hasattr(attr[()], "decode"): - # byte string as ndarray scalar - return attr[()].decode("utf-8") - elif isinstance(attr, numpy.ndarray) and len(attr.shape) and\ - hasattr(attr[0], "decode"): - # array of byte-strings - return [element.decode("utf-8") for element in attr] - else: - # attr is not a byte-string - return attr +class InvalidNXdataError(Exception): + pass -def is_valid_nxdata(group): # noqa - """Check if a h5py group is a **valid** NX_data group. +class NXdata(object): + """NXdata parser. - If the group does not have attribute *@NX_class=NXdata*, this function - simply returns *False*. + .. note:: - Else, warning messages are logged to troubleshoot malformed NXdata groups - prior to returning *False*. + Before attempting to access any attribute or property, + you should check that :attr:`is_valid` is *True*. - :param group: h5py-like group - :return: True if this NXdata group is valid. - :raise TypeError: if group is not a h5py group, a spech5 group, - or a fabioh5 group + :param group: h5py-like group following the NeXus *NXdata* specification. + :param boolean validate: Set this parameter to *False* to skip the initial + validation. This option is provided for optimisation purposes, for cases + where :meth:`silx.io.nxdata.is_valid_nxdata` has already been called + prior to instantiating this :class:`NXdata`. """ - if not is_group(group): - raise TypeError("group must be a h5py-like group") - if get_attr_as_string(group, "NX_class") != "NXdata": - return False - if "signal" not in group.attrs: - _logger.info("NXdata group %s does not define a signal attr. " - "Testing legacy specification.", group.name) - signal_name = None - for key in group: - if "signal" in group[key].attrs: - signal_name = key - signal_attr = group[key].attrs["signal"] - if signal_attr in [1, b"1", u"1"]: - # This is the main (default) signal - break - if signal_name is None: - _nxdata_warning("No @signal attribute on the NXdata group, " - "and no dataset with a @signal=1 attr found", - group.name) - return False - else: - signal_name = get_attr_as_string(group, "signal") - - if signal_name not in group or not is_dataset(group[signal_name]): - _nxdata_warning( - "Cannot find signal dataset '%s'" % signal_name, - group.name) - return False - - auxiliary_signals_names = get_attr_as_string(group, "auxiliary_signals", - default=[]) - if isinstance(auxiliary_signals_names, (six.text_type, six.binary_type)): - auxiliary_signals_names = [auxiliary_signals_names] - for asn in auxiliary_signals_names: - if asn not in group or not is_dataset(group[asn]): - _nxdata_warning( - "Cannot find auxiliary signal dataset '%s'" % asn, - group.name) - return False - if group[signal_name].shape != group[asn].shape: - _nxdata_warning("Auxiliary signal dataset '%s' does not" % asn + - " have the same shape as the main signal.", - group.name) - return False - - ndim = len(group[signal_name].shape) - - if "axes" in group.attrs: - axes_names = get_attr_as_string(group, "axes") - if isinstance(axes_names, (six.text_type, six.binary_type)): - axes_names = [axes_names] - - if 1 < ndim < len(axes_names): - # ndim = 1 with several axes could be a scatter - _nxdata_warning( - "More @axes defined than there are " + - "signal dimensions: " + - "%d axes, %d dimensions." % (len(axes_names), ndim), - group.name) - return False - - # case of less axes than dimensions: number of axes must match - # dimensionality defined by @interpretation - if ndim > len(axes_names): - interpretation = get_attr_as_string(group[signal_name], "interpretation") - if interpretation is None: - interpretation = get_attr_as_string(group, "interpretation") - if interpretation is None: - _nxdata_warning("No @interpretation and not enough" + - " @axes defined.", group.name) - return False - - if interpretation not in _INTERPDIM: - _nxdata_warning("Unrecognized @interpretation=" + interpretation + - " for data with wrong number of defined @axes.", - group.name) - return False - if interpretation == "rgba-image": - if ndim != 3 or group[signal_name].shape[-1] not in [3, 4]: - _nxdata_warning( - "Inconsistent RGBA Image. Expected 3 dimensions with " + - "last one of length 3 or 4. Got ndim=%d " % ndim + - "with last dimension of length %d." % group[signal_name].shape[-1], - group.name) - return False - if len(axes_names) != 2: - _nxdata_warning( - "Inconsistent number of axes for RGBA Image. Expected " - "3, but got %d." % ndim, group.name) - return False - - elif len(axes_names) != _INTERPDIM[interpretation]: - _nxdata_warning( - "%d-D signal with @interpretation=%s " % (ndim, interpretation) + - "must define %d or %d axes." % (ndim, _INTERPDIM[interpretation]), - group.name) - return False - - # Test consistency of @uncertainties - uncertainties_names = get_attr_as_string(group, "uncertainties") - if uncertainties_names is None: - uncertainties_names = get_attr_as_string(group[signal_name], "uncertainties") - if isinstance(uncertainties_names, str): - uncertainties_names = [uncertainties_names] - if uncertainties_names is not None: - if len(uncertainties_names) != len(axes_names): - _nxdata_warning("@uncertainties does not define the same " + - "number of fields than @axes", group.name) - return False - - # Test individual axes - is_scatter = True # true if all axes have the same size as the signal - signal_size = 1 - for dim in group[signal_name].shape: - signal_size *= dim - polynomial_axes_names = [] - for i, axis_name in enumerate(axes_names): - - if axis_name == ".": - continue - if axis_name not in group or not is_dataset(group[axis_name]): - _nxdata_warning("Could not find axis dataset '%s'" % axis_name, - group.name) - return False - - axis_size = 1 - for dim in group[axis_name].shape: - axis_size *= dim - - if len(group[axis_name].shape) != 1: - # too me, it makes only sense to have a n-D axis if it's total - # size is exactly the signal's size (weird n-d scatter) - if axis_size != signal_size: - _nxdata_warning("Axis %s is not a 1D dataset" % axis_name + - " and its shape does not match the signal's shape", - group.name) - return False - axis_len = axis_size - else: - # for a 1-d axis, - fg_idx = group[axis_name].attrs.get("first_good", 0) - lg_idx = group[axis_name].attrs.get("last_good", len(group[axis_name]) - 1) - axis_len = lg_idx + 1 - fg_idx - - if axis_len != signal_size: - if axis_len not in group[signal_name].shape + (1, 2): - _nxdata_warning( - "Axis %s number of elements does not " % axis_name + - "correspond to the length of any signal dimension," - " it does not appear to be a constant or a linear calibration," + - " and this does not seem to be a scatter plot.", group.name) - return False - elif axis_len in (1, 2): - polynomial_axes_names.append(axis_name) - is_scatter = False - else: - if not is_scatter: - _nxdata_warning( - "Axis %s number of elements is equal " % axis_name + - "to the length of the signal, but this does not seem" + - " to be a scatter (other axes have different sizes)", - group.name) - return False - - # Test individual uncertainties - errors_name = axis_name + "_errors" - if errors_name not in group and uncertainties_names is not None: - errors_name = uncertainties_names[i] - if errors_name in group and axis_name not in polynomial_axes_names: - if group[errors_name].shape != group[axis_name].shape: - _nxdata_warning( - "Errors '%s' does not have the same " % errors_name + - "dimensions as axis '%s'." % axis_name, group.name) - return False - - # test dimensions of errors associated with signal - if "errors" in group and is_dataset(group["errors"]): - if group["errors"].shape != group[signal_name].shape: - _nxdata_warning("Dataset containing standard deviations must " + - "have the same dimensions as the signal.", - group.name) - return False - return True + def __init__(self, group, validate=True): + super(NXdata, self).__init__() + self.group = group + """h5py-like group object with @NX_class=NXdata. + """ -class NXdata(object): - """ + self.issues = [] + """List of error messages for malformed NXdata.""" - :param group: h5py-like group following the NeXus *NXdata* specification. - """ - def __init__(self, group): - if not is_valid_nxdata(group): - raise TypeError("group is not a valid NXdata class") - super(NXdata, self).__init__() + if validate: + self._validate() + self.is_valid = not self.issues + """Validity status for this NXdata. + If False, all properties and attributes will be None. + """ self._is_scatter = None self._axes = None - self.group = group - """h5py-like group object compliant with NeXus NXdata specification. - """ - - self.signal = self.group[self.signal_dataset_name] + self.signal = None """Main signal dataset in this NXdata group. - In case more than one signal is present in this group, the other ones can be found in :attr:`auxiliary_signals`. """ - self.signal_name = get_attr_as_string(self.signal, "long_name") + self.signal_name = None """Signal long name, as specified in the @long_name attribute of the signal dataset. If not specified, the dataset name is used.""" - if self.signal_name is None: - self.signal_name = self.signal_dataset_name - - # ndim will be available in very recent h5py versions only - self.signal_ndim = getattr(self.signal, "ndim", - len(self.signal.shape)) - self.signal_is_0d = self.signal_ndim == 0 - self.signal_is_1d = self.signal_ndim == 1 - self.signal_is_2d = self.signal_ndim == 2 - self.signal_is_3d = self.signal_ndim == 3 + self.signal_ndim = None + self.signal_is_0d = None + self.signal_is_1d = None + self.signal_is_2d = None + self.signal_is_3d = None - self.axes_names = [] + self.axes_names = None """List of axes names in a NXdata group. This attribute is similar to :attr:`axes_dataset_names` except that if an axis dataset has a "@long_name" attribute, it will be used instead of the dataset name. """ - # check if axis dataset defines @long_name - for i, dsname in enumerate(self.axes_dataset_names): - if dsname is not None and "long_name" in self.group[dsname].attrs: - self.axes_names.append(get_attr_as_string(self.group[dsname], "long_name")) - else: - self.axes_names.append(dsname) - # excludes scatters - self.signal_is_1d = self.signal_is_1d and len(self.axes) <= 1 # excludes n-D scatters + if not self.is_valid: + nxdata_logger.debug("%s", self.issues) + else: + self.signal = self.group[self.signal_dataset_name] + self.signal_name = get_attr_as_unicode(self.signal, "long_name") + + if self.signal_name is None: + self.signal_name = self.signal_dataset_name + + # ndim will be available in very recent h5py versions only + self.signal_ndim = getattr(self.signal, "ndim", + len(self.signal.shape)) + + self.signal_is_0d = self.signal_ndim == 0 + self.signal_is_1d = self.signal_ndim == 1 + self.signal_is_2d = self.signal_ndim == 2 + self.signal_is_3d = self.signal_ndim == 3 + + self.axes_names = [] + # check if axis dataset defines @long_name + for i, dsname in enumerate(self.axes_dataset_names): + if dsname is not None and "long_name" in self.group[dsname].attrs: + self.axes_names.append(get_attr_as_unicode(self.group[dsname], "long_name")) + else: + self.axes_names.append(dsname) + + # excludes scatters + self.signal_is_1d = self.signal_is_1d and len(self.axes) <= 1 # excludes n-D scatters + + def _validate(self): + """Fill :attr:`issues` with error messages for each error found.""" + if not is_group(self.group): + raise TypeError("group must be a h5py-like group") + if get_attr_as_unicode(self.group, "NX_class") != "NXdata": + self.issues.append("Group has no attribute @NX_class='NXdata'") + + signal_name = get_signal_name(self.group) + if signal_name is None: + self.issues.append("No @signal attribute on the NXdata group, " + "and no dataset with a @signal=1 attr found") + # very difficult to do more consistency tests without signal + return + + elif signal_name not in self.group or not is_dataset(self.group[signal_name]): + self.issues.append("Cannot find signal dataset '%s'" % signal_name) + return + + auxiliary_signals_names = get_auxiliary_signals_names(self.group) + self.issues += validate_auxiliary_signals(self.group, + signal_name, + auxiliary_signals_names) + + if "axes" in self.group.attrs: + axes_names = get_attr_as_unicode(self.group, "axes") + if isinstance(axes_names, (six.text_type, six.binary_type)): + axes_names = [axes_names] + + self.issues += validate_number_of_axes(self.group, signal_name, + num_axes=len(axes_names)) + + # Test consistency of @uncertainties + uncertainties_names = get_uncertainties_names(self.group, signal_name) + if uncertainties_names is not None: + if len(uncertainties_names) != len(axes_names): + self.issues.append("@uncertainties does not define the same " + + "number of fields than @axes") + + # Test individual axes + is_scatter = True # true if all axes have the same size as the signal + signal_size = 1 + for dim in self.group[signal_name].shape: + signal_size *= dim + polynomial_axes_names = [] + for i, axis_name in enumerate(axes_names): + + if axis_name == ".": + continue + if axis_name not in self.group or not is_dataset(self.group[axis_name]): + self.issues.append("Could not find axis dataset '%s'" % axis_name) + continue + + axis_size = 1 + for dim in self.group[axis_name].shape: + axis_size *= dim + + if len(self.group[axis_name].shape) != 1: + # I don't know how to interpret n-D axes + self.issues.append("Axis %s is not 1D" % axis_name) + continue + else: + # for a 1-d axis, + fg_idx = self.group[axis_name].attrs.get("first_good", 0) + lg_idx = self.group[axis_name].attrs.get("last_good", len(self.group[axis_name]) - 1) + axis_len = lg_idx + 1 - fg_idx + + if axis_len != signal_size: + if axis_len not in self.group[signal_name].shape + (1, 2): + self.issues.append( + "Axis %s number of elements does not " % axis_name + + "correspond to the length of any signal dimension," + " it does not appear to be a constant or a linear calibration," + + " and this does not seem to be a scatter plot.") + continue + elif axis_len in (1, 2): + polynomial_axes_names.append(axis_name) + is_scatter = False + else: + if not is_scatter: + self.issues.append( + "Axis %s number of elements is equal " % axis_name + + "to the length of the signal, but this does not seem" + + " to be a scatter (other axes have different sizes)") + continue + + # Test individual uncertainties + errors_name = axis_name + "_errors" + if errors_name not in self.group and uncertainties_names is not None: + errors_name = uncertainties_names[i] + if errors_name in self.group and axis_name not in polynomial_axes_names: + if self.group[errors_name].shape != self.group[axis_name].shape: + self.issues.append( + "Errors '%s' does not have the same " % errors_name + + "dimensions as axis '%s'." % axis_name) + + # test dimensions of errors associated with signal + if "errors" in self.group and is_dataset(self.group["errors"]): + if self.group["errors"].shape != self.group[signal_name].shape: + self.issues.append( + "Dataset containing standard deviations must " + + "have the same dimensions as the signal.") @property def signal_dataset_name(self): """Name of the main signal dataset.""" - signal_dataset_name = get_attr_as_string(self.group, "signal") + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + signal_dataset_name = get_attr_as_unicode(self.group, "signal") if signal_dataset_name is None: # find a dataset with @signal == 1 for dsname in self.group: @@ -389,9 +275,11 @@ class NXdata(object): but has a dataset with an attribute *@signal=1*, we look for datasets with attributes *@signal=2, @signal=3...* (deprecated NXdata specification).""" - signal_dataset_name = get_attr_as_string(self.group, "signal") + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + signal_dataset_name = get_attr_as_unicode(self.group, "signal") if signal_dataset_name is not None: - auxiliary_signals_names = get_attr_as_string(self.group, "auxiliary_signals") + auxiliary_signals_names = get_attr_as_unicode(self.group, "auxiliary_signals") if auxiliary_signals_names is not None: if not isinstance(auxiliary_signals_names, (tuple, list, numpy.ndarray)): @@ -409,16 +297,16 @@ class NXdata(object): ds = self.group[dsname] signal_attr = ds.attrs.get("signal") if signal_attr is not None and not is_dataset(ds): - _logger.warning("Item %s with @signal=%s is not a dataset (%s)", - dsname, signal_attr, type(ds)) + nxdata_logger.warning("Item %s with @signal=%s is not a dataset (%s)", + dsname, signal_attr, type(ds)) continue if signal_attr is not None: try: signal_number = int(signal_attr) except (ValueError, TypeError): - _logger.warning("Could not parse attr @signal=%s on " - "dataset %s as an int", - signal_attr, dsname) + nxdata_logger.warning("Could not parse attr @signal=%s on " + "dataset %s as an int", + signal_attr, dsname) continue numbered_names.append((signal_number, dsname)) return [a[1] for a in sorted(numbered_names)] @@ -430,6 +318,9 @@ class NXdata(object): Similar to :attr:`auxiliary_signals_dataset_names`, but the @long_name is used when this attribute is present, instead of the dataset name. """ + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + signal_names = [] for asdn in self.auxiliary_signals_dataset_names: if "long_name" in self.group[asdn].attrs: @@ -441,6 +332,9 @@ class NXdata(object): @property def auxiliary_signals(self): """List of all auxiliary signal datasets.""" + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + return [self.group[dsname] for dsname in self.auxiliary_signals_dataset_names] @property @@ -467,17 +361,20 @@ class NXdata(object): of the allowed values, but no error is raised and the unknown interpretation is returned anyway. """ + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + allowed_interpretations = [None, "scalar", "spectrum", "image", "rgba-image", # "hsla-image", "cmyk-image" "vertex"] - interpretation = get_attr_as_string(self.signal, "interpretation") + interpretation = get_attr_as_unicode(self.signal, "interpretation") if interpretation is None: - interpretation = get_attr_as_string(self.group, "interpretation") + interpretation = get_attr_as_unicode(self.group, "interpretation") if interpretation not in allowed_interpretations: - _logger.warning("Interpretation %s is not valid." % interpretation + - " Valid values: " + ", ".join(allowed_interpretations)) + nxdata_logger.warning("Interpretation %s is not valid." % interpretation + + " Valid values: " + ", ".join(allowed_interpretations)) return interpretation @property @@ -510,6 +407,9 @@ class NXdata(object): :rtype: List[Dataset or 1D array or None] """ + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + if self._axes is not None: # use cache return self._axes @@ -544,11 +444,14 @@ class NXdata(object): "." in that position in the *@axes* array), `None` is inserted in the output list in its position. """ + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + numbered_names = [] # used in case of @axis=0 (old spec) - axes_dataset_names = get_attr_as_string(self.group, "axes") + axes_dataset_names = get_attr_as_unicode(self.group, "axes") if axes_dataset_names is None: # try @axes on signal dataset (older NXdata specification) - axes_dataset_names = get_attr_as_string(self.signal, "axes") + axes_dataset_names = get_attr_as_unicode(self.signal, "axes") if axes_dataset_names is not None: # we expect a comma separated string if hasattr(axes_dataset_names, "split"): @@ -563,8 +466,8 @@ class NXdata(object): try: axis_num = int(axis_attr) except (ValueError, TypeError): - _logger.warning("Could not interpret attr @axis as" - "int on dataset %s", dsname) + nxdata_logger.warning("Could not interpret attr @axis as" + "int on dataset %s", dsname) continue numbered_names.append((axis_num, dsname)) @@ -599,8 +502,8 @@ class NXdata(object): if self.interpretation != "rgba-image": # @axes may only define 1 or 2 axes if @interpretation=spectrum/image. # Use the existing names for the last few dims, and prepend with Nones. - assert len(axes_dataset_names) == _INTERPDIM[self.interpretation] - all_dimensions_names = [None] * (ndims - _INTERPDIM[self.interpretation]) + assert len(axes_dataset_names) == INTERPDIM[self.interpretation] + all_dimensions_names = [None] * (ndims - INTERPDIM[self.interpretation]) for axis_name in axes_dataset_names: all_dimensions_names.append(axis_name) else: @@ -625,6 +528,9 @@ class NXdata(object): dataset or an axis dataset happened to be called "title", we also support providing the title as an attribute of the NXdata group. """ + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + title = self.group.get("title") data_dataset_names = [self.signal_name] + self.axes_dataset_names if (title is not None and is_dataset(title) and @@ -647,13 +553,16 @@ class NXdata(object): :return: Dataset with axis errors, or None :raise KeyError: if this group does not contain a dataset named axis_name """ + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + # ensure axis_name is decoded, before comparing it with decoded attributes if hasattr(axis_name, "decode"): axis_name = axis_name.decode("utf-8") if axis_name not in self.group: # tolerate axis_name given as @long_name for item in self.group: - long_name = get_attr_as_string(self.group[item], "long_name") + long_name = get_attr_as_unicode(self.group[item], "long_name") if long_name is not None and long_name == axis_name: axis_name = item break @@ -674,17 +583,17 @@ class NXdata(object): else: return self.group[errors_name] # case of uncertainties dataset name provided in @uncertainties - uncertainties_names = get_attr_as_string(self.group, "uncertainties") + uncertainties_names = get_attr_as_unicode(self.group, "uncertainties") if uncertainties_names is None: - uncertainties_names = get_attr_as_string(self.signal, "uncertainties") - if isinstance(uncertainties_names, str): + uncertainties_names = get_attr_as_unicode(self.signal, "uncertainties") + if isinstance(uncertainties_names, six.text_type): uncertainties_names = [uncertainties_names] if uncertainties_names is not None: # take the uncertainty with the same index as the axis in @axes - axes_ds_names = get_attr_as_string(self.group, "axes") + axes_ds_names = get_attr_as_unicode(self.group, "axes") if axes_ds_names is None: - axes_ds_names = get_attr_as_string(self.signal, "axes") - if isinstance(axes_ds_names, str): + axes_ds_names = get_attr_as_unicode(self.signal, "axes") + if isinstance(axes_ds_names, six.text_type): axes_ds_names = [axes_ds_names] elif isinstance(axes_ds_names, numpy.ndarray): # transform numpy.ndarray into list @@ -708,6 +617,9 @@ class NXdata(object): :return: Dataset with errors, or None """ + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + if "errors" not in self.group: return None return self.group["errors"] @@ -716,6 +628,9 @@ class NXdata(object): def is_scatter(self): """True if the signal is 1D and all the axes have the same size as the signal.""" + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + if self._is_scatter is not None: return self._is_scatter if not self.signal_is_1d: @@ -737,12 +652,18 @@ class NXdata(object): @property def is_x_y_value_scatter(self): """True if this is a scatter with a signal and two axes.""" + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + return self.is_scatter and len(self.axes) == 2 # we currently have no widget capable of plotting 4D data @property def is_unsupported_scatter(self): """True if this is a scatter with a signal and more than 2 axes.""" + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + return self.is_scatter and len(self.axes) > 2 @property @@ -750,6 +671,9 @@ class NXdata(object): """This property is True if the signal is 1D or :attr:`interpretation` is *"spectrum"*, and there is at most one axis with a consistent length. """ + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + if self.signal_is_0d or self.interpretation not in [None, "spectrum"]: return False # the axis, if any, must be of the same length as the last dimension @@ -770,12 +694,15 @@ class NXdata(object): and interpretation *rgba-image*, or >2D with interpretation *image*. The axes (if any) length must also be consistent with the signal shape. """ + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + if self.interpretation in ["scalar", "spectrum", "scaler"]: return False if self.signal_is_0d or self.signal_is_1d: return False if not self.signal_is_2d and \ - self.interpretation not in ["image", "rgba-image"]: + self.interpretation not in ["image", "rgba-image"]: return False if self.signal_is_3d and self.interpretation == "rgba-image": if self.signal.shape[-1] not in [3, 4]: @@ -798,6 +725,9 @@ class NXdata(object): The axes length must also be consistent with the last 3 dimensions of the signal. """ + if not self.is_valid: + raise InvalidNXdataError("Unable to parse invalid NXdata") + if self.signal_ndim < 3 or self.interpretation in [ "scalar", "scaler", "spectrum", "image", "rgba-image"]: return False @@ -808,13 +738,30 @@ class NXdata(object): return True -def is_NXentry_with_default_NXdata(group): +def is_valid_nxdata(group): # noqa + """Check if a h5py group is a **valid** NX_data group. + + :param group: h5py-like group + :return: True if this NXdata group is valid. + :raise TypeError: if group is not a h5py group, a spech5 group, + or a fabioh5 group + """ + nxd = NXdata(group) + return nxd.is_valid + + +def is_NXentry_with_default_NXdata(group, validate=True): """Return True if group is a valid NXentry defining a valid default - NXdata.""" + NXdata. + + :param group: h5py-like object. + :param bool validate: Set this to False if you are sure that the target group + is valid NXdata (i.e. :func:`silx.io.nxdata.is_valid_nxdata(target_group)` + returns True). Parameter provided for optimisation purposes.""" if not is_group(group): return False - if get_attr_as_string(group, "NX_class") != "NXentry": + if get_attr_as_unicode(group, "NX_class") != "NXentry": return False default_nxdata_name = group.attrs.get("default") @@ -826,12 +773,21 @@ def is_NXentry_with_default_NXdata(group): if not is_group(default_nxdata_group): return False - return is_valid_nxdata(default_nxdata_group) + if not validate: + return True + else: + return is_valid_nxdata(default_nxdata_group) -def is_NXroot_with_default_NXdata(group): +def is_NXroot_with_default_NXdata(group, validate=True): """Return True if group is a valid NXroot defining a default NXentry - defining a valid default NXdata.""" + defining a valid default NXdata. + + :param group: h5py-like object. + :param bool validate: Set this to False if you are sure that the target group + is valid NXdata (i.e. :func:`silx.io.nxdata.is_valid_nxdata(target_group)` + returns True). Parameter provided for optimisation purposes. + """ if not is_group(group): return False @@ -839,7 +795,7 @@ def is_NXroot_with_default_NXdata(group): # is therefore optional. We accept groups that are not located at the root # if they have @NX_class=NXroot (use case: several nexus files archived # in a single HDF5 file) - if get_attr_as_string(group, "NX_class") != "NXroot" and not is_file(group): + if get_attr_as_unicode(group, "NX_class") != "NXroot" and not is_file(group): return False default_nxentry_name = group.attrs.get("default") @@ -847,10 +803,11 @@ def is_NXroot_with_default_NXdata(group): return False default_nxentry_group = group.get(default_nxentry_name) - return is_NXentry_with_default_NXdata(default_nxentry_group) + return is_NXentry_with_default_NXdata(default_nxentry_group, + validate=validate) -def get_default(group): +def get_default(group, validate=True): """Return a :class:`NXdata` object corresponding to the default NXdata group in the group specified as parameter. @@ -862,185 +819,23 @@ def get_default(group): :param group: h5py-like group following the Nexus specification (NXdata, NXentry or NXroot). + :param bool validate: Set this to False if you are sure that group + is valid NXdata (i.e. :func:`silx.io.nxdata.is_valid_nxdata(group)` + returns True). Parameter provided for optimisation purposes. :return: :class:`NXdata` object or None :raise TypeError: if group is not a h5py-like group """ if not is_group(group): raise TypeError("Provided parameter is not a h5py-like group") - if is_NXroot_with_default_NXdata(group): + if is_NXroot_with_default_NXdata(group, validate=validate): default_entry = group[group.attrs["default"]] default_data = default_entry[default_entry.attrs["default"]] - elif is_NXentry_with_default_NXdata(group): + elif is_NXentry_with_default_NXdata(group, validate=validate): default_data = group[group.attrs["default"]] - elif is_valid_nxdata(group): + elif not validate or is_valid_nxdata(group): default_data = group else: return None - return NXdata(default_data) - - -def _str_to_utf8(text): - return numpy.array(text, dtype=h5py.special_dtype(vlen=six.text_type)) - - -def save_NXdata(filename, signal, axes=None, - signal_name="data", axes_names=None, - signal_long_name=None, axes_long_names=None, - signal_errors=None, axes_errors=None, - title=None, interpretation=None, - nxentry_name="entry", nxdata_name=None): - """Write data to an NXdata group. - - .. note:: - - No consistency checks are made regarding the dimensionality of the - signal and number of axes. The user is responsible for providing - meaningful data, that can be interpreted by visualization software. - - :param str filename: Path to output file. If the file does not - exists, it is created. - :param numpy.ndarray signal: Signal array. - :param List[numpy.ndarray] axes: List of axes arrays. - :param str signal_name: Name of signal dataset, in output file - :param List[str] axes_names: List of dataset names for axes, in - output file - :param str signal_long_name: *@long_name* attribute for signal, or None. - :param axes_long_names: None, or list of long names - for axes - :type axes_long_names: List[str, None] - :param numpy.ndarray signal_errors: Array of errors associated with the - signal - :param axes_errors: List of arrays of errors - associated with each axis - :type axes_errors: List[numpy.ndarray, None] - :param str title: Graph title (saved as a "title" dataset) or None. - :param str interpretation: *@interpretation* attribute ("spectrum", - "image", "rgba-image" or None). This is only needed in cases of - ambiguous dimensionality, e.g. a 3D array which represents a RGBA - image rather than a stack. - :param str nxentry_name: Name of group in which the NXdata group - is created. By default, "/entry" is used. - - .. note:: - - The Nexus format specification requires for NXdata groups - be part of a NXentry group. - The specified group should have attribute *@NX_class=NXentry*, in - order for the created file to be nexus compliant. - :param str nxdata_name: Name of NXdata group. If omitted (None), the - function creates a new group using the first available name ("data0", - or "data1"...). - Overwriting an existing group (or dataset) is not supported, you must - delete it yourself prior to calling this function if this is what you - want. - :return: True if save was successful, else False. - """ - if h5py is None: - raise ImportError("h5py could not be imported, but is required by " - "save_NXdata function") - - if axes_names is not None: - assert axes is not None, "Axes names defined, but missing axes arrays" - assert len(axes) == len(axes_names), \ - "Mismatch between number of axes and axes_names" - - if axes is not None and axes_names is None: - axes_names = [] - for i, axis in enumerate(axes): - axes_names.append("dim%d" % i if axis is not None else ".") - if axes is None: - axes = [] - - # Open file in - if os.path.exists(filename): - errmsg = "Cannot write/append to existing path %s" - if not os.path.isfile(filename): - errmsg += " (not a file)" - _logger.error(errmsg, filename) - return False - if not os.access(filename, os.W_OK): - errmsg += " (no permission to write)" - _logger.error(errmsg, filename) - return False - mode = "r+" - else: - mode = "w-" - - with h5py.File(filename, mode=mode) as h5f: - # get or create entry - if nxentry_name is not None: - entry = h5f.require_group(nxentry_name) - if "default" not in h5f.attrs: - # set this entry as default - h5f.attrs["default"] = _str_to_utf8(nxentry_name) - if "NX_class" not in entry.attrs: - entry.attrs["NX_class"] = u"NXentry" - else: - # write NXdata into the root of the file (invalid nexus!) - entry = h5f - - # Create NXdata group - if nxdata_name is not None: - if nxdata_name in entry: - _logger.error("Cannot assign an NXdata group to an existing" - " group or dataset") - return False - else: - # no name specified, take one that is available - nxdata_name = "data0" - i = 1 - while nxdata_name in entry: - _logger.info("%s item already exists in NXentry group," + - " trying %s", nxdata_name, "data%d" % i) - nxdata_name = "data%d" % i - i += 1 - - data_group = entry.create_group(nxdata_name) - data_group.attrs["NX_class"] = u"NXdata" - data_group.attrs["signal"] = _str_to_utf8(signal_name) - if axes: - data_group.attrs["axes"] = _str_to_utf8(axes_names) - if title: - # not in NXdata spec, but implemented by nexpy - data_group["title"] = title - # better way imho - data_group.attrs["title"] = _str_to_utf8(title) - - signal_dataset = data_group.create_dataset(signal_name, - data=signal) - if signal_long_name: - signal_dataset.attrs["long_name"] = _str_to_utf8(signal_long_name) - if interpretation: - signal_dataset.attrs["interpretation"] = _str_to_utf8(interpretation) - - for i, axis_array in enumerate(axes): - if axis_array is None: - assert axes_names[i] in [".", None], \ - "Axis name defined for dim %d but no axis array" % i - continue - axis_dataset = data_group.create_dataset(axes_names[i], - data=axis_array) - if axes_long_names is not None: - axis_dataset.attrs["long_name"] = _str_to_utf8(axes_long_names[i]) - - if signal_errors is not None: - data_group.create_dataset("errors", - data=signal_errors) - - if axes_errors is not None: - assert isinstance(axes_errors, (list, tuple)), \ - "axes_errors must be a list or a tuple of ndarray or None" - assert len(axes_errors) == len(axes_names), \ - "Mismatch between number of axes_errors and axes_names" - for i, axis_errors in enumerate(axes_errors): - if axis_errors is not None: - dsname = axes_names[i] + "_errors" - data_group.create_dataset(dsname, - data=axis_errors) - if "default" not in entry.attrs: - # set this NXdata as default - entry.attrs["default"] = nxdata_name - - return True + return NXdata(default_data, validate=False) diff --git a/silx/io/nxdata/write.py b/silx/io/nxdata/write.py new file mode 100644 index 0000000..05eef4d --- /dev/null +++ b/silx/io/nxdata/write.py @@ -0,0 +1,202 @@ +# coding: utf-8 +# /*########################################################################## +# +# Copyright (c) 2017-2018 European Synchrotron Radiation Facility +# +# Permission is hereby granted, free of charge, to any person obtaining a copy +# of this software and associated documentation files (the "Software"), to deal +# in the Software without restriction, including without limitation the rights +# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the Software is +# furnished to do so, subject to the following conditions: +# +# The above copyright notice and this permission notice shall be included in +# all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +# THE SOFTWARE. +# +# ###########################################################################*/ + +import h5py +import os +import logging +import numpy +from silx.third_party import six + +__authors__ = ["P. Knobel"] +__license__ = "MIT" +__date__ = "17/04/2018" + + +_logger = logging.getLogger(__name__) + + +def _str_to_utf8(text): + return numpy.array(text, dtype=h5py.special_dtype(vlen=six.text_type)) + + +def save_NXdata(filename, signal, axes=None, + signal_name="data", axes_names=None, + signal_long_name=None, axes_long_names=None, + signal_errors=None, axes_errors=None, + title=None, interpretation=None, + nxentry_name="entry", nxdata_name=None): + """Write data to an NXdata group. + + .. note:: + + No consistency checks are made regarding the dimensionality of the + signal and number of axes. The user is responsible for providing + meaningful data, that can be interpreted by visualization software. + + :param str filename: Path to output file. If the file does not + exists, it is created. + :param numpy.ndarray signal: Signal array. + :param List[numpy.ndarray] axes: List of axes arrays. + :param str signal_name: Name of signal dataset, in output file + :param List[str] axes_names: List of dataset names for axes, in + output file + :param str signal_long_name: *@long_name* attribute for signal, or None. + :param axes_long_names: None, or list of long names + for axes + :type axes_long_names: List[str, None] + :param numpy.ndarray signal_errors: Array of errors associated with the + signal + :param axes_errors: List of arrays of errors + associated with each axis + :type axes_errors: List[numpy.ndarray, None] + :param str title: Graph title (saved as a "title" dataset) or None. + :param str interpretation: *@interpretation* attribute ("spectrum", + "image", "rgba-image" or None). This is only needed in cases of + ambiguous dimensionality, e.g. a 3D array which represents a RGBA + image rather than a stack. + :param str nxentry_name: Name of group in which the NXdata group + is created. By default, "/entry" is used. + + .. note:: + + The Nexus format specification requires for NXdata groups + be part of a NXentry group. + The specified group should have attribute *@NX_class=NXentry*, in + order for the created file to be nexus compliant. + :param str nxdata_name: Name of NXdata group. If omitted (None), the + function creates a new group using the first available name ("data0", + or "data1"...). + Overwriting an existing group (or dataset) is not supported, you must + delete it yourself prior to calling this function if this is what you + want. + :return: True if save was successful, else False. + """ + if h5py is None: + raise ImportError("h5py could not be imported, but is required by " + "save_NXdata function") + + if axes_names is not None: + assert axes is not None, "Axes names defined, but missing axes arrays" + assert len(axes) == len(axes_names), \ + "Mismatch between number of axes and axes_names" + + if axes is not None and axes_names is None: + axes_names = [] + for i, axis in enumerate(axes): + axes_names.append("dim%d" % i if axis is not None else ".") + if axes is None: + axes = [] + + # Open file in + if os.path.exists(filename): + errmsg = "Cannot write/append to existing path %s" + if not os.path.isfile(filename): + errmsg += " (not a file)" + _logger.error(errmsg, filename) + return False + if not os.access(filename, os.W_OK): + errmsg += " (no permission to write)" + _logger.error(errmsg, filename) + return False + mode = "r+" + else: + mode = "w-" + + with h5py.File(filename, mode=mode) as h5f: + # get or create entry + if nxentry_name is not None: + entry = h5f.require_group(nxentry_name) + if "default" not in h5f.attrs: + # set this entry as default + h5f.attrs["default"] = _str_to_utf8(nxentry_name) + if "NX_class" not in entry.attrs: + entry.attrs["NX_class"] = u"NXentry" + else: + # write NXdata into the root of the file (invalid nexus!) + entry = h5f + + # Create NXdata group + if nxdata_name is not None: + if nxdata_name in entry: + _logger.error("Cannot assign an NXdata group to an existing" + " group or dataset") + return False + else: + # no name specified, take one that is available + nxdata_name = "data0" + i = 1 + while nxdata_name in entry: + _logger.info("%s item already exists in NXentry group," + + " trying %s", nxdata_name, "data%d" % i) + nxdata_name = "data%d" % i + i += 1 + + data_group = entry.create_group(nxdata_name) + data_group.attrs["NX_class"] = u"NXdata" + data_group.attrs["signal"] = _str_to_utf8(signal_name) + if axes: + data_group.attrs["axes"] = _str_to_utf8(axes_names) + if title: + # not in NXdata spec, but implemented by nexpy + data_group["title"] = title + # better way imho + data_group.attrs["title"] = _str_to_utf8(title) + + signal_dataset = data_group.create_dataset(signal_name, + data=signal) + if signal_long_name: + signal_dataset.attrs["long_name"] = _str_to_utf8(signal_long_name) + if interpretation: + signal_dataset.attrs["interpretation"] = _str_to_utf8(interpretation) + + for i, axis_array in enumerate(axes): + if axis_array is None: + assert axes_names[i] in [".", None], \ + "Axis name defined for dim %d but no axis array" % i + continue + axis_dataset = data_group.create_dataset(axes_names[i], + data=axis_array) + if axes_long_names is not None: + axis_dataset.attrs["long_name"] = _str_to_utf8(axes_long_names[i]) + + if signal_errors is not None: + data_group.create_dataset("errors", + data=signal_errors) + + if axes_errors is not None: + assert isinstance(axes_errors, (list, tuple)), \ + "axes_errors must be a list or a tuple of ndarray or None" + assert len(axes_errors) == len(axes_names), \ + "Mismatch between number of axes_errors and axes_names" + for i, axis_errors in enumerate(axes_errors): + if axis_errors is not None: + dsname = axes_names[i] + "_errors" + data_group.create_dataset(dsname, + data=axis_errors) + if "default" not in entry.attrs: + # set this NXdata as default + entry.attrs["default"] = nxdata_name + + return True diff --git a/silx/io/setup.py b/silx/io/setup.py index 971d358..4aaf324 100644 --- a/silx/io/setup.py +++ b/silx/io/setup.py @@ -4,7 +4,7 @@ # # /*########################################################################## # -# Copyright (c) 2016-2017 European Synchrotron Radiation Facility +# Copyright (c) 2016-2018 European Synchrotron Radiation Facility # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal @@ -33,7 +33,6 @@ __date__ = "03/10/2016" import os import sys -import numpy from numpy.distutils.misc_util import Configuration @@ -67,6 +66,7 @@ else: def configuration(parent_package='', top_path=None): config = Configuration('io', parent_package, top_path) config.add_subpackage('test') + config.add_subpackage('nxdata') srcfiles = ['sfheader', 'sfinit', 'sflists', 'sfdata', 'sfindex', 'sflabel', 'sfmca', 'sftools', 'locale_management'] @@ -76,8 +76,7 @@ def configuration(parent_package='', top_path=None): config.add_extension('specfile', sources=sources, define_macros=define_macros, - include_dirs=[os.path.join('specfile', 'include'), - numpy.get_include()], + include_dirs=[os.path.join('specfile', 'include')], language='c') return config diff --git a/silx/io/specfile.c b/silx/io/specfile.c index a95282a..ca67473 100644 --- a/silx/io/specfile.c +++ b/silx/io/specfile.c @@ -1,28 +1,51 @@ -/* Generated by Cython 0.21.1 */ +/* Generated by Cython 0.28.3 */ + +/* BEGIN: Cython Metadata +{ + "distutils": { + "define_macros": [ + [ + "SPECFILE_POSIX", + null + ] + ], + "depends": [ + "silx/io/specfile/include/SpecFileCython.h" + ], + "include_dirs": [ + "silx/io/specfile/include" + ], + "language": "c", + "name": "silx.io.specfile", + "sources": [ + "silx/io/specfile.pyx", + "silx/io/specfile/src/sfheader.c", + "silx/io/specfile/src/sfinit.c", + "silx/io/specfile/src/sflists.c", + "silx/io/specfile/src/sfdata.c", + "silx/io/specfile/src/sfindex.c", + "silx/io/specfile/src/sflabel.c", + "silx/io/specfile/src/sfmca.c", + "silx/io/specfile/src/sftools.c", + "silx/io/specfile/src/locale_management.c" + ] + }, + "module_name": "silx.io.specfile" +} +END: Cython Metadata */ #define PY_SSIZE_T_CLEAN -#ifndef CYTHON_USE_PYLONG_INTERNALS -#ifdef PYLONG_BITS_IN_DIGIT -#define CYTHON_USE_PYLONG_INTERNALS 0 -#else -#include "pyconfig.h" -#ifdef PYLONG_BITS_IN_DIGIT -#define CYTHON_USE_PYLONG_INTERNALS 1 -#else -#define CYTHON_USE_PYLONG_INTERNALS 0 -#endif -#endif -#endif #include "Python.h" #ifndef Py_PYTHON_H #error Python headers needed to compile C extensions, please install development version of Python. -#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) - #error Cython requires Python 2.6+ or Python 3.2+. +#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000) + #error Cython requires Python 2.6+ or Python 3.3+. #else -#define CYTHON_ABI "0_21_1" +#define CYTHON_ABI "0_28_3" +#define CYTHON_FUTURE_DIVISION 0 #include <stddef.h> #ifndef offsetof -#define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) + #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) #endif #if !defined(WIN32) && !defined(MS_WINDOWS) #ifndef __stdcall @@ -41,6 +64,12 @@ #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif +#define __PYX_COMMA , +#ifndef HAVE_LONG_LONG + #if PY_VERSION_HEX >= 0x02070000 + #define HAVE_LONG_LONG + #endif +#endif #ifndef PY_LONG_LONG #define PY_LONG_LONG LONG_LONG #endif @@ -48,63 +77,399 @@ #define Py_HUGE_VAL HUGE_VAL #endif #ifdef PYPY_VERSION -#define CYTHON_COMPILING_IN_PYPY 1 -#define CYTHON_COMPILING_IN_CPYTHON 0 + #define CYTHON_COMPILING_IN_PYPY 1 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #undef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 0 + #undef CYTHON_USE_PYTYPE_LOOKUP + #define CYTHON_USE_PYTYPE_LOOKUP 0 + #if PY_VERSION_HEX < 0x03050000 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #elif !defined(CYTHON_USE_ASYNC_SLOTS) + #define CYTHON_USE_ASYNC_SLOTS 1 + #endif + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #undef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #undef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 1 + #undef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 0 + #undef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 0 + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 + #undef CYTHON_PEP489_MULTI_PHASE_INIT + #define CYTHON_PEP489_MULTI_PHASE_INIT 0 + #undef CYTHON_USE_TP_FINALIZE + #define CYTHON_USE_TP_FINALIZE 0 +#elif defined(PYSTON_VERSION) + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 1 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #undef CYTHON_USE_PYTYPE_LOOKUP + #define CYTHON_USE_PYTYPE_LOOKUP 0 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 + #undef CYTHON_PEP489_MULTI_PHASE_INIT + #define CYTHON_PEP489_MULTI_PHASE_INIT 0 + #undef CYTHON_USE_TP_FINALIZE + #define CYTHON_USE_TP_FINALIZE 0 #else -#define CYTHON_COMPILING_IN_PYPY 0 -#define CYTHON_COMPILING_IN_CPYTHON 1 + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 1 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #if PY_VERSION_HEX < 0x02070000 + #undef CYTHON_USE_PYTYPE_LOOKUP + #define CYTHON_USE_PYTYPE_LOOKUP 0 + #elif !defined(CYTHON_USE_PYTYPE_LOOKUP) + #define CYTHON_USE_PYTYPE_LOOKUP 1 + #endif + #if PY_MAJOR_VERSION < 3 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #elif !defined(CYTHON_USE_ASYNC_SLOTS) + #define CYTHON_USE_ASYNC_SLOTS 1 + #endif + #if PY_VERSION_HEX < 0x02070000 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #elif !defined(CYTHON_USE_PYLONG_INTERNALS) + #define CYTHON_USE_PYLONG_INTERNALS 1 + #endif + #ifndef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 1 + #endif + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #if PY_VERSION_HEX < 0x030300F0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #elif !defined(CYTHON_USE_UNICODE_WRITER) + #define CYTHON_USE_UNICODE_WRITER 1 + #endif + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #ifndef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 1 + #endif + #ifndef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 1 + #endif + #ifndef CYTHON_PEP489_MULTI_PHASE_INIT + #define CYTHON_PEP489_MULTI_PHASE_INIT (0 && PY_VERSION_HEX >= 0x03050000) + #endif + #ifndef CYTHON_USE_TP_FINALIZE + #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1) + #endif #endif -#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 -#define Py_OptimizeFlag 0 +#if !defined(CYTHON_FAST_PYCCALL) +#define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) +#endif +#if CYTHON_USE_PYLONG_INTERNALS + #include "longintrepr.h" + #undef SHIFT + #undef BASE + #undef MASK +#endif +#ifndef __has_attribute + #define __has_attribute(x) 0 +#endif +#ifndef __has_cpp_attribute + #define __has_cpp_attribute(x) 0 +#endif +#ifndef CYTHON_RESTRICT + #if defined(__GNUC__) + #define CYTHON_RESTRICT __restrict__ + #elif defined(_MSC_VER) && _MSC_VER >= 1400 + #define CYTHON_RESTRICT __restrict + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_RESTRICT restrict + #else + #define CYTHON_RESTRICT + #endif +#endif +#ifndef CYTHON_UNUSED +# if defined(__GNUC__) +# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +#endif +#ifndef CYTHON_MAYBE_UNUSED_VAR +# if defined(__cplusplus) + template<class T> void CYTHON_MAYBE_UNUSED_VAR( const T& ) { } +# else +# define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x) +# endif +#endif +#ifndef CYTHON_NCP_UNUSED +# if CYTHON_COMPILING_IN_CPYTHON +# define CYTHON_NCP_UNUSED +# else +# define CYTHON_NCP_UNUSED CYTHON_UNUSED +# endif +#endif +#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) +#ifdef _MSC_VER + #ifndef _MSC_STDINT_H_ + #if _MSC_VER < 1300 + typedef unsigned char uint8_t; + typedef unsigned int uint32_t; + #else + typedef unsigned __int8 uint8_t; + typedef unsigned __int32 uint32_t; + #endif + #endif +#else + #include <stdint.h> +#endif +#ifndef CYTHON_FALLTHROUGH + #if defined(__cplusplus) && __cplusplus >= 201103L + #if __has_cpp_attribute(fallthrough) + #define CYTHON_FALLTHROUGH [[fallthrough]] + #elif __has_cpp_attribute(clang::fallthrough) + #define CYTHON_FALLTHROUGH [[clang::fallthrough]] + #elif __has_cpp_attribute(gnu::fallthrough) + #define CYTHON_FALLTHROUGH [[gnu::fallthrough]] + #endif + #endif + #ifndef CYTHON_FALLTHROUGH + #if __has_attribute(fallthrough) + #define CYTHON_FALLTHROUGH __attribute__((fallthrough)) + #else + #define CYTHON_FALLTHROUGH + #endif + #endif + #if defined(__clang__ ) && defined(__apple_build_version__) + #if __apple_build_version__ < 7000000 + #undef CYTHON_FALLTHROUGH + #define CYTHON_FALLTHROUGH + #endif + #endif +#endif + +#ifndef CYTHON_INLINE + #if defined(__clang__) + #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) + #elif defined(__GNUC__) + #define CYTHON_INLINE __inline__ + #elif defined(_MSC_VER) + #define CYTHON_INLINE __inline + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_INLINE inline + #else + #define CYTHON_INLINE + #endif +#endif + +#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag) + #define Py_OptimizeFlag 0 #endif #define __PYX_BUILD_PY_SSIZE_T "n" #define CYTHON_FORMAT_SSIZE_T "z" #if PY_MAJOR_VERSION < 3 #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" - #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyClass_Type #else #define __Pyx_BUILTIN_MODULE_NAME "builtins" - #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyType_Type #endif -#if PY_MAJOR_VERSION >= 3 +#ifndef Py_TPFLAGS_CHECKTYPES #define Py_TPFLAGS_CHECKTYPES 0 +#endif +#ifndef Py_TPFLAGS_HAVE_INDEX #define Py_TPFLAGS_HAVE_INDEX 0 +#endif +#ifndef Py_TPFLAGS_HAVE_NEWBUFFER #define Py_TPFLAGS_HAVE_NEWBUFFER 0 #endif -#if PY_VERSION_HEX < 0x030400a1 && !defined(Py_TPFLAGS_HAVE_FINALIZE) +#ifndef Py_TPFLAGS_HAVE_FINALIZE #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif +#if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL) + #ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + #endif + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs); + typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args, + Py_ssize_t nargs, PyObject *kwnames); +#else + #define __Pyx_PyCFunctionFast _PyCFunctionFast + #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords +#endif +#if CYTHON_FAST_PYCCALL +#define __Pyx_PyFastCFunction_Check(func)\ + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))))) +#else +#define __Pyx_PyFastCFunction_Check(func) 0 +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) + #define PyObject_Malloc(s) PyMem_Malloc(s) + #define PyObject_Free(p) PyMem_Free(p) + #define PyObject_Realloc(p) PyMem_Realloc(p) +#endif +#if CYTHON_COMPILING_IN_PYSTON + #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno) +#else + #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) +#endif +#if !CYTHON_FAST_THREAD_STATE || PY_VERSION_HEX < 0x02070000 + #define __Pyx_PyThreadState_Current PyThreadState_GET() +#elif PY_VERSION_HEX >= 0x03060000 + #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet() +#elif PY_VERSION_HEX >= 0x03000000 + #define __Pyx_PyThreadState_Current PyThreadState_GET() +#else + #define __Pyx_PyThreadState_Current _PyThreadState_Current +#endif +#if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT) +#include "pythread.h" +#define Py_tss_NEEDS_INIT 0 +typedef int Py_tss_t; +static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) { + *key = PyThread_create_key(); + return 0; // PyThread_create_key reports success always +} +static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) { + Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t)); + *key = Py_tss_NEEDS_INIT; + return key; +} +static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) { + PyObject_Free(key); +} +static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) { + return *key != Py_tss_NEEDS_INIT; +} +static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) { + PyThread_delete_key(*key); + *key = Py_tss_NEEDS_INIT; +} +static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) { + return PyThread_set_key_value(*key, value); +} +static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) { + return PyThread_get_key_value(*key); +} +#endif // TSS (Thread Specific Storage) API +#if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized) +#define __Pyx_PyDict_NewPresized(n) ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n)) +#else +#define __Pyx_PyDict_NewPresized(n) PyDict_New() +#endif +#if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION + #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) +#else + #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) +#endif +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && CYTHON_USE_UNICODE_INTERNALS +#define __Pyx_PyDict_GetItemStr(dict, name) _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash) +#else +#define __Pyx_PyDict_GetItemStr(dict, name) PyDict_GetItem(dict, name) +#endif #if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) #define CYTHON_PEP393_ENABLED 1 - #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ? \ + #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ 0 : _PyUnicode_Ready((PyObject *)(op))) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) #else #define CYTHON_PEP393_ENABLED 0 + #define PyUnicode_1BYTE_KIND 1 + #define PyUnicode_2BYTE_KIND 2 + #define PyUnicode_4BYTE_KIND 4 #define __Pyx_PyUnicode_READY(op) (0) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111) #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) #endif #if CYTHON_COMPILING_IN_PYPY #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) - #define __Pyx_PyFrozenSet_Size(s) PyObject_Size(s) #else #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) - #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ? \ + #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) - #define __Pyx_PyFrozenSet_Size(s) PySet_Size(s) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains) + #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check) + #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format) + #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) #endif #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) @@ -113,12 +478,16 @@ #else #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) #endif +#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII) + #define PyObject_ASCII(o) PyObject_Repr(o) +#endif #if PY_MAJOR_VERSION >= 3 #define PyBaseString_Type PyUnicode_Type #define PyStringObject PyUnicodeObject #define PyString_Type PyUnicode_Type #define PyString_Check PyUnicode_Check #define PyString_CheckExact PyUnicode_CheckExact + #define PyObject_Unicode PyObject_Str #endif #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj) @@ -130,7 +499,11 @@ #ifndef PySet_CheckExact #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) #endif -#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) +#if CYTHON_ASSUME_SAFE_MACROS + #define __Pyx_PySequence_SIZE(seq) Py_SIZE(seq) +#else + #define __Pyx_PySequence_SIZE(seq) PySequence_Size(seq) +#endif #if PY_MAJOR_VERSION >= 3 #define PyIntObject PyLongObject #define PyInt_Type PyLong_Type @@ -165,59 +538,52 @@ #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t #endif #if PY_MAJOR_VERSION >= 3 - #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) + #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : (Py_INCREF(func), func)) #else #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) #endif -#ifndef CYTHON_INLINE - #if defined(__GNUC__) - #define CYTHON_INLINE __inline__ - #elif defined(_MSC_VER) - #define CYTHON_INLINE __inline - #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L - #define CYTHON_INLINE inline +#if CYTHON_USE_ASYNC_SLOTS + #if PY_VERSION_HEX >= 0x030500B1 + #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods + #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async) #else - #define CYTHON_INLINE + #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved)) #endif +#else + #define __Pyx_PyType_AsAsync(obj) NULL #endif -#ifndef CYTHON_RESTRICT - #if defined(__GNUC__) - #define CYTHON_RESTRICT __restrict__ - #elif defined(_MSC_VER) && _MSC_VER >= 1400 - #define CYTHON_RESTRICT __restrict - #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L - #define CYTHON_RESTRICT restrict - #else - #define CYTHON_RESTRICT - #endif +#ifndef __Pyx_PyAsyncMethodsStruct + typedef struct { + unaryfunc am_await; + unaryfunc am_aiter; + unaryfunc am_anext; + } __Pyx_PyAsyncMethodsStruct; #endif + +#if defined(WIN32) || defined(MS_WINDOWS) + #define _USE_MATH_DEFINES +#endif +#include <math.h> #ifdef NAN #define __PYX_NAN() ((float) NAN) #else static CYTHON_INLINE float __PYX_NAN() { - /* Initialize NaN. The sign is irrelevant, an exponent with all bits 1 and - a nonzero mantissa means NaN. If the first bit in the mantissa is 1, it is - a quiet NaN. */ float value; memset(&value, 0xFF, sizeof(value)); return value; } #endif -#ifdef __cplusplus -template<typename T> -void __Pyx_call_destructor(T* x) { - x->~T(); -} +#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL) +#define __Pyx_truncl trunc +#else +#define __Pyx_truncl truncl #endif -#if PY_MAJOR_VERSION >= 3 - #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) - #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) -#else - #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) - #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) -#endif +#define __PYX_ERR(f_index, lineno, Ln_error) \ +{ \ + __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \ +} #ifndef __PYX_EXTERN_C #ifdef __cplusplus @@ -227,40 +593,24 @@ void __Pyx_call_destructor(T* x) { #endif #endif -#if defined(WIN32) || defined(MS_WINDOWS) -#define _USE_MATH_DEFINES -#endif -#include <math.h> #define __PYX_HAVE__silx__io__specfile #define __PYX_HAVE_API__silx__io__specfile -#include "string.h" -#include "stdio.h" -#include "stdlib.h" -#include "numpy/arrayobject.h" -#include "numpy/ufuncobject.h" +/* Early includes */ +#include <string.h> +#include <stdlib.h> #include "SpecFileCython.h" +#include "pythread.h" +#include <stdio.h> +#include "pystate.h" #ifdef _OPENMP #include <omp.h> #endif /* _OPENMP */ -#ifdef PYREX_WITHOUT_ASSERTIONS +#if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS) #define CYTHON_WITHOUT_ASSERTIONS #endif -#ifndef CYTHON_UNUSED -# if defined(__GNUC__) -# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) -# define CYTHON_UNUSED __attribute__ ((__unused__)) -# else -# define CYTHON_UNUSED -# endif -# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) -# define CYTHON_UNUSED __attribute__ ((__unused__)) -# else -# define CYTHON_UNUSED -# endif -#endif -typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; +typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding; const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 @@ -268,18 +618,36 @@ typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; #define __PYX_DEFAULT_STRING_ENCODING "" #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize -#define __Pyx_fits_Py_ssize_t(v, type, is_signed) ( \ - (sizeof(type) < sizeof(Py_ssize_t)) || \ - (sizeof(type) > sizeof(Py_ssize_t) && \ - likely(v < (type)PY_SSIZE_T_MAX || \ - v == (type)PY_SSIZE_T_MAX) && \ - (!is_signed || likely(v > (type)PY_SSIZE_T_MIN || \ - v == (type)PY_SSIZE_T_MIN))) || \ - (sizeof(type) == sizeof(Py_ssize_t) && \ - (is_signed || likely(v < (type)PY_SSIZE_T_MAX || \ +#define __Pyx_uchar_cast(c) ((unsigned char)c) +#define __Pyx_long_cast(x) ((long)x) +#define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\ + (sizeof(type) < sizeof(Py_ssize_t)) ||\ + (sizeof(type) > sizeof(Py_ssize_t) &&\ + likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX) &&\ + (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\ + v == (type)PY_SSIZE_T_MIN))) ||\ + (sizeof(type) == sizeof(Py_ssize_t) &&\ + (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\ v == (type)PY_SSIZE_T_MAX))) ) -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); +#if defined (__cplusplus) && __cplusplus >= 201103L + #include <cstdlib> + #define __Pyx_sst_abs(value) std::abs(value) +#elif SIZEOF_INT >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) abs(value) +#elif SIZEOF_LONG >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) labs(value) +#elif defined (_MSC_VER) + #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value)) +#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define __Pyx_sst_abs(value) llabs(value) +#elif defined (__GNUC__) + #define __Pyx_sst_abs(value) __builtin_llabs(value) +#else + #define __Pyx_sst_abs(value) ((value<0) ? -value : value) +#endif +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*); +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l) #define __Pyx_PyBytes_FromString PyBytes_FromString @@ -292,38 +660,51 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize #endif -#define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_FromUString(s) __Pyx_PyObject_FromString((const char*)s) -#define __Pyx_PyBytes_FromUString(s) __Pyx_PyBytes_FromString((const char*)s) -#define __Pyx_PyByteArray_FromUString(s) __Pyx_PyByteArray_FromString((const char*)s) -#define __Pyx_PyStr_FromUString(s) __Pyx_PyStr_FromString((const char*)s) -#define __Pyx_PyUnicode_FromUString(s) __Pyx_PyUnicode_FromString((const char*)s) -#if PY_MAJOR_VERSION < 3 -static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) -{ +#define __Pyx_PyBytes_AsWritableString(s) ((char*) PyBytes_AS_STRING(s)) +#define __Pyx_PyBytes_AsWritableSString(s) ((signed char*) PyBytes_AS_STRING(s)) +#define __Pyx_PyBytes_AsWritableUString(s) ((unsigned char*) PyBytes_AS_STRING(s)) +#define __Pyx_PyBytes_AsString(s) ((const char*) PyBytes_AS_STRING(s)) +#define __Pyx_PyBytes_AsSString(s) ((const signed char*) PyBytes_AS_STRING(s)) +#define __Pyx_PyBytes_AsUString(s) ((const unsigned char*) PyBytes_AS_STRING(s)) +#define __Pyx_PyObject_AsWritableString(s) ((char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsWritableUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsSString(s) ((const signed char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_AsUString(s) ((const unsigned char*) __Pyx_PyObject_AsString(s)) +#define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) +#define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) +#define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) +#define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) +#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) +static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) { const Py_UNICODE *u_end = u; while (*u_end++) ; return (size_t)(u_end - u - 1); } -#else -#define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen -#endif #define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) #define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode -#define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None) -#define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False)) +#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) +#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) +static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b); static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); -static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x); +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x); +#define __Pyx_PySequence_Tuple(obj)\ + (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj)) static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_ASSUME_SAFE_MACROS #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) #else #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) #endif #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) +#if PY_MAJOR_VERSION >= 3 +#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x)) +#else +#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) +#endif +#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x)) #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII static int __Pyx_sys_getdefaultencoding_not_ascii; static int __Pyx_init_sys_getdefaultencoding_params(void) { @@ -334,7 +715,7 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) { const char* default_encoding_c; sys = PyImport_ImportModule("sys"); if (!sys) goto bad; - default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); + default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); Py_DECREF(sys); if (!default_encoding) goto bad; default_encoding_c = PyBytes_AsString(default_encoding); @@ -408,294 +789,142 @@ bad: #define likely(x) (x) #define unlikely(x) (x) #endif /* __GNUC__ */ +static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; } -static PyObject *__pyx_m; +static PyObject *__pyx_m = NULL; static PyObject *__pyx_d; static PyObject *__pyx_b; +static PyObject *__pyx_cython_runtime = NULL; static PyObject *__pyx_empty_tuple; static PyObject *__pyx_empty_bytes; +static PyObject *__pyx_empty_unicode; static int __pyx_lineno; static int __pyx_clineno = 0; static const char * __pyx_cfilenm= __FILE__; static const char *__pyx_filename; -#if !defined(CYTHON_CCOMPLEX) - #if defined(__cplusplus) - #define CYTHON_CCOMPLEX 1 - #elif defined(_Complex_I) - #define CYTHON_CCOMPLEX 1 - #else - #define CYTHON_CCOMPLEX 0 - #endif -#endif -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - #include <complex> - #else - #include <complex.h> - #endif -#endif -#if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__) - #undef _Complex_I - #define _Complex_I 1.0fj -#endif - static const char *__pyx_f[] = { "silx/io/specfile.pyx", - "__init__.pxd", - "type.pxd", + "stringsource", }; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":723 - * # in Cython to enable them only on the right systems. - * - * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<< - * ctypedef npy_int16 int16_t - * ctypedef npy_int32 int32_t - */ -typedef npy_int8 __pyx_t_5numpy_int8_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":724 - * - * ctypedef npy_int8 int8_t - * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<< - * ctypedef npy_int32 int32_t - * ctypedef npy_int64 int64_t - */ -typedef npy_int16 __pyx_t_5numpy_int16_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":725 - * ctypedef npy_int8 int8_t - * ctypedef npy_int16 int16_t - * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<< - * ctypedef npy_int64 int64_t - * #ctypedef npy_int96 int96_t - */ -typedef npy_int32 __pyx_t_5numpy_int32_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":726 - * ctypedef npy_int16 int16_t - * ctypedef npy_int32 int32_t - * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<< - * #ctypedef npy_int96 int96_t - * #ctypedef npy_int128 int128_t - */ -typedef npy_int64 __pyx_t_5numpy_int64_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":730 - * #ctypedef npy_int128 int128_t - * - * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<< - * ctypedef npy_uint16 uint16_t - * ctypedef npy_uint32 uint32_t - */ -typedef npy_uint8 __pyx_t_5numpy_uint8_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":731 - * - * ctypedef npy_uint8 uint8_t - * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<< - * ctypedef npy_uint32 uint32_t - * ctypedef npy_uint64 uint64_t - */ -typedef npy_uint16 __pyx_t_5numpy_uint16_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":732 - * ctypedef npy_uint8 uint8_t - * ctypedef npy_uint16 uint16_t - * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<< - * ctypedef npy_uint64 uint64_t - * #ctypedef npy_uint96 uint96_t - */ -typedef npy_uint32 __pyx_t_5numpy_uint32_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":733 - * ctypedef npy_uint16 uint16_t - * ctypedef npy_uint32 uint32_t - * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<< - * #ctypedef npy_uint96 uint96_t - * #ctypedef npy_uint128 uint128_t - */ -typedef npy_uint64 __pyx_t_5numpy_uint64_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":737 - * #ctypedef npy_uint128 uint128_t - * - * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<< - * ctypedef npy_float64 float64_t - * #ctypedef npy_float80 float80_t - */ -typedef npy_float32 __pyx_t_5numpy_float32_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":738 - * - * ctypedef npy_float32 float32_t - * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<< - * #ctypedef npy_float80 float80_t - * #ctypedef npy_float128 float128_t - */ -typedef npy_float64 __pyx_t_5numpy_float64_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":747 - * # The int types are mapped a bit surprising -- - * # numpy.int corresponds to 'l' and numpy.long to 'q' - * ctypedef npy_long int_t # <<<<<<<<<<<<<< - * ctypedef npy_longlong long_t - * ctypedef npy_longlong longlong_t - */ -typedef npy_long __pyx_t_5numpy_int_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":748 - * # numpy.int corresponds to 'l' and numpy.long to 'q' - * ctypedef npy_long int_t - * ctypedef npy_longlong long_t # <<<<<<<<<<<<<< - * ctypedef npy_longlong longlong_t - * - */ -typedef npy_longlong __pyx_t_5numpy_long_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":749 - * ctypedef npy_long int_t - * ctypedef npy_longlong long_t - * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<< - * - * ctypedef npy_ulong uint_t - */ -typedef npy_longlong __pyx_t_5numpy_longlong_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":751 - * ctypedef npy_longlong longlong_t - * - * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<< - * ctypedef npy_ulonglong ulong_t - * ctypedef npy_ulonglong ulonglong_t - */ -typedef npy_ulong __pyx_t_5numpy_uint_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":752 - * - * ctypedef npy_ulong uint_t - * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<< - * ctypedef npy_ulonglong ulonglong_t - * - */ -typedef npy_ulonglong __pyx_t_5numpy_ulong_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":753 - * ctypedef npy_ulong uint_t - * ctypedef npy_ulonglong ulong_t - * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<< - * - * ctypedef npy_intp intp_t - */ -typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":755 - * ctypedef npy_ulonglong ulonglong_t - * - * ctypedef npy_intp intp_t # <<<<<<<<<<<<<< - * ctypedef npy_uintp uintp_t - * - */ -typedef npy_intp __pyx_t_5numpy_intp_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":756 - * - * ctypedef npy_intp intp_t - * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<< - * - * ctypedef npy_double float_t - */ -typedef npy_uintp __pyx_t_5numpy_uintp_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":758 - * ctypedef npy_uintp uintp_t - * - * ctypedef npy_double float_t # <<<<<<<<<<<<<< - * ctypedef npy_double double_t - * ctypedef npy_longdouble longdouble_t - */ -typedef npy_double __pyx_t_5numpy_float_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":759 - * - * ctypedef npy_double float_t - * ctypedef npy_double double_t # <<<<<<<<<<<<<< - * ctypedef npy_longdouble longdouble_t - * - */ -typedef npy_double __pyx_t_5numpy_double_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":760 - * ctypedef npy_double float_t - * ctypedef npy_double double_t - * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<< - * - * ctypedef npy_cfloat cfloat_t - */ -typedef npy_longdouble __pyx_t_5numpy_longdouble_t; -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - typedef ::std::complex< float > __pyx_t_float_complex; - #else - typedef float _Complex __pyx_t_float_complex; - #endif +/* MemviewSliceStruct.proto */ +struct __pyx_memoryview_obj; +typedef struct { + struct __pyx_memoryview_obj *memview; + char *data; + Py_ssize_t shape[8]; + Py_ssize_t strides[8]; + Py_ssize_t suboffsets[8]; +} __Pyx_memviewslice; +#define __Pyx_MemoryView_Len(m) (m.shape[0]) + +/* Atomics.proto */ +#include <pythread.h> +#ifndef CYTHON_ATOMICS + #define CYTHON_ATOMICS 1 +#endif +#define __pyx_atomic_int_type int +#if CYTHON_ATOMICS && __GNUC__ >= 4 && (__GNUC_MINOR__ > 1 ||\ + (__GNUC_MINOR__ == 1 && __GNUC_PATCHLEVEL >= 2)) &&\ + !defined(__i386__) + #define __pyx_atomic_incr_aligned(value, lock) __sync_fetch_and_add(value, 1) + #define __pyx_atomic_decr_aligned(value, lock) __sync_fetch_and_sub(value, 1) + #ifdef __PYX_DEBUG_ATOMICS + #warning "Using GNU atomics" + #endif +#elif CYTHON_ATOMICS && defined(_MSC_VER) && 0 + #include <Windows.h> + #undef __pyx_atomic_int_type + #define __pyx_atomic_int_type LONG + #define __pyx_atomic_incr_aligned(value, lock) InterlockedIncrement(value) + #define __pyx_atomic_decr_aligned(value, lock) InterlockedDecrement(value) + #ifdef __PYX_DEBUG_ATOMICS + #pragma message ("Using MSVC atomics") + #endif +#elif CYTHON_ATOMICS && (defined(__ICC) || defined(__INTEL_COMPILER)) && 0 + #define __pyx_atomic_incr_aligned(value, lock) _InterlockedIncrement(value) + #define __pyx_atomic_decr_aligned(value, lock) _InterlockedDecrement(value) + #ifdef __PYX_DEBUG_ATOMICS + #warning "Using Intel atomics" + #endif #else - typedef struct { float real, imag; } __pyx_t_float_complex; + #undef CYTHON_ATOMICS + #define CYTHON_ATOMICS 0 + #ifdef __PYX_DEBUG_ATOMICS + #warning "Not using atomics" + #endif #endif - -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - typedef ::std::complex< double > __pyx_t_double_complex; - #else - typedef double _Complex __pyx_t_double_complex; - #endif +typedef volatile __pyx_atomic_int_type __pyx_atomic_int; +#if CYTHON_ATOMICS + #define __pyx_add_acquisition_count(memview)\ + __pyx_atomic_incr_aligned(__pyx_get_slice_count_pointer(memview), memview->lock) + #define __pyx_sub_acquisition_count(memview)\ + __pyx_atomic_decr_aligned(__pyx_get_slice_count_pointer(memview), memview->lock) #else - typedef struct { double real, imag; } __pyx_t_double_complex; + #define __pyx_add_acquisition_count(memview)\ + __pyx_add_acquisition_count_locked(__pyx_get_slice_count_pointer(memview), memview->lock) + #define __pyx_sub_acquisition_count(memview)\ + __pyx_sub_acquisition_count_locked(__pyx_get_slice_count_pointer(memview), memview->lock) +#endif + +/* ForceInitThreads.proto */ +#ifndef __PYX_FORCE_INIT_THREADS + #define __PYX_FORCE_INIT_THREADS 0 #endif +/* NoFastGil.proto */ +#define __Pyx_PyGILState_Ensure PyGILState_Ensure +#define __Pyx_PyGILState_Release PyGILState_Release +#define __Pyx_FastGIL_Remember() +#define __Pyx_FastGIL_Forget() +#define __Pyx_FastGilFuncInit() + +/* BufferFormatStructs.proto */ +#define IS_UNSIGNED(type) (((type) -1) > 0) +struct __Pyx_StructField_; +#define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) +typedef struct { + const char* name; + struct __Pyx_StructField_* fields; + size_t size; + size_t arraysize[8]; + int ndim; + char typegroup; + char is_unsigned; + int flags; +} __Pyx_TypeInfo; +typedef struct __Pyx_StructField_ { + __Pyx_TypeInfo* type; + const char* name; + size_t offset; +} __Pyx_StructField; +typedef struct { + __Pyx_StructField* field; + size_t parent_offset; +} __Pyx_BufFmt_StackElem; +typedef struct { + __Pyx_StructField root; + __Pyx_BufFmt_StackElem* head; + size_t fmt_offset; + size_t new_count, enc_count; + size_t struct_alignment; + int is_complex; + char enc_type; + char new_packmode; + char enc_packmode; + char is_valid_array; +} __Pyx_BufFmt_Context; + /*--- Type declarations ---*/ struct __pyx_obj_4silx_2io_8specfile_SpecFile; struct __pyx_obj_4silx_2io_8specfile___pyx_scope_struct____iter__; struct __pyx_obj_4silx_2io_8specfile___pyx_scope_struct_1___iter__; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":762 - * ctypedef npy_longdouble longdouble_t - * - * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<< - * ctypedef npy_cdouble cdouble_t - * ctypedef npy_clongdouble clongdouble_t - */ -typedef npy_cfloat __pyx_t_5numpy_cfloat_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":763 - * - * ctypedef npy_cfloat cfloat_t - * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<< - * ctypedef npy_clongdouble clongdouble_t - * - */ -typedef npy_cdouble __pyx_t_5numpy_cdouble_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":764 - * ctypedef npy_cfloat cfloat_t - * ctypedef npy_cdouble cdouble_t - * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<< - * - * ctypedef npy_cdouble complex_t - */ -typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t; - -/* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":766 - * ctypedef npy_clongdouble clongdouble_t - * - * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<< - * - * cdef inline object PyArray_MultiIterNew1(a): - */ -typedef npy_cdouble __pyx_t_5numpy_complex_t; +struct __pyx_array_obj; +struct __pyx_MemviewEnum_obj; +struct __pyx_memoryview_obj; +struct __pyx_memoryviewslice_obj; /* "specfile_wrapper.pxd":35 * pass @@ -706,7 +935,7 @@ typedef npy_cdouble __pyx_t_5numpy_complex_t; */ typedef struct _SpecFile __pyx_t_4silx_2io_16specfile_wrapper_SpecFileHandle; -/* "silx/io/specfile.pyx":643 +/* "silx/io/specfile.pyx":629 * * * cdef class SpecFile(object): # <<<<<<<<<<<<<< @@ -720,7 +949,7 @@ struct __pyx_obj_4silx_2io_8specfile_SpecFile { }; -/* "silx/io/specfile.pyx":314 +/* "silx/io/specfile.pyx":300 * mca_index) * * def __iter__(self): # <<<<<<<<<<<<<< @@ -733,10 +962,11 @@ struct __pyx_obj_4silx_2io_8specfile___pyx_scope_struct____iter__ { PyObject *__pyx_v_self; Py_ssize_t __pyx_t_0; Py_ssize_t __pyx_t_1; + Py_ssize_t __pyx_t_2; }; -/* "silx/io/specfile.pyx":698 +/* "silx/io/specfile.pyx":684 * return specfile_wrapper.SfScanNo(self.handle) * * def __iter__(self): # <<<<<<<<<<<<<< @@ -749,8 +979,137 @@ struct __pyx_obj_4silx_2io_8specfile___pyx_scope_struct_1___iter__ { struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self; Py_ssize_t __pyx_t_0; Py_ssize_t __pyx_t_1; + Py_ssize_t __pyx_t_2; +}; + + +/* "View.MemoryView":104 + * + * @cname("__pyx_array") + * cdef class array: # <<<<<<<<<<<<<< + * + * cdef: + */ +struct __pyx_array_obj { + PyObject_HEAD + struct __pyx_vtabstruct_array *__pyx_vtab; + char *data; + Py_ssize_t len; + char *format; + int ndim; + Py_ssize_t *_shape; + Py_ssize_t *_strides; + Py_ssize_t itemsize; + PyObject *mode; + PyObject *_format; + void (*callback_free_data)(void *); + int free_data; + int dtype_is_object; +}; + + +/* "View.MemoryView":278 + * + * @cname('__pyx_MemviewEnum') + * cdef class Enum(object): # <<<<<<<<<<<<<< + * cdef object name + * def __init__(self, name): + */ +struct __pyx_MemviewEnum_obj { + PyObject_HEAD + PyObject *name; +}; + + +/* "View.MemoryView":329 + * + * @cname('__pyx_memoryview') + * cdef class memoryview(object): # <<<<<<<<<<<<<< + * + * cdef object obj + */ +struct __pyx_memoryview_obj { + PyObject_HEAD + struct __pyx_vtabstruct_memoryview *__pyx_vtab; + PyObject *obj; + PyObject *_size; + PyObject *_array_interface; + PyThread_type_lock lock; + __pyx_atomic_int acquisition_count[2]; + __pyx_atomic_int *acquisition_count_aligned_p; + Py_buffer view; + int flags; + int dtype_is_object; + __Pyx_TypeInfo *typeinfo; +}; + + +/* "View.MemoryView":960 + * + * @cname('__pyx_memoryviewslice') + * cdef class _memoryviewslice(memoryview): # <<<<<<<<<<<<<< + * "Internal class for passing memoryview slices to Python" + * + */ +struct __pyx_memoryviewslice_obj { + struct __pyx_memoryview_obj __pyx_base; + __Pyx_memviewslice from_slice; + PyObject *from_object; + PyObject *(*to_object_func)(char *); + int (*to_dtype_func)(char *, PyObject *); +}; + + + +/* "View.MemoryView":104 + * + * @cname("__pyx_array") + * cdef class array: # <<<<<<<<<<<<<< + * + * cdef: + */ + +struct __pyx_vtabstruct_array { + PyObject *(*get_memview)(struct __pyx_array_obj *); +}; +static struct __pyx_vtabstruct_array *__pyx_vtabptr_array; + + +/* "View.MemoryView":329 + * + * @cname('__pyx_memoryview') + * cdef class memoryview(object): # <<<<<<<<<<<<<< + * + * cdef object obj + */ + +struct __pyx_vtabstruct_memoryview { + char *(*get_item_pointer)(struct __pyx_memoryview_obj *, PyObject *); + PyObject *(*is_slice)(struct __pyx_memoryview_obj *, PyObject *); + PyObject *(*setitem_slice_assignment)(struct __pyx_memoryview_obj *, PyObject *, PyObject *); + PyObject *(*setitem_slice_assign_scalar)(struct __pyx_memoryview_obj *, struct __pyx_memoryview_obj *, PyObject *); + PyObject *(*setitem_indexed)(struct __pyx_memoryview_obj *, PyObject *, PyObject *); + PyObject *(*convert_item_to_object)(struct __pyx_memoryview_obj *, char *); + PyObject *(*assign_item_from_object)(struct __pyx_memoryview_obj *, char *, PyObject *); +}; +static struct __pyx_vtabstruct_memoryview *__pyx_vtabptr_memoryview; + + +/* "View.MemoryView":960 + * + * @cname('__pyx_memoryviewslice') + * cdef class _memoryviewslice(memoryview): # <<<<<<<<<<<<<< + * "Internal class for passing memoryview slices to Python" + * + */ + +struct __pyx_vtabstruct__memoryviewslice { + struct __pyx_vtabstruct_memoryview __pyx_base; }; +static struct __pyx_vtabstruct__memoryviewslice *__pyx_vtabptr__memoryviewslice; +/* --- Runtime support code (head) --- */ +/* Refnanny.proto */ #ifndef CYTHON_REFNANNY #define CYTHON_REFNANNY 0 #endif @@ -767,19 +1126,19 @@ struct __pyx_obj_4silx_2io_8specfile___pyx_scope_struct_1___iter__ { static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname); #define __Pyx_RefNannyDeclarations void *__pyx_refnanny = NULL; #ifdef WITH_THREAD - #define __Pyx_RefNannySetupContext(name, acquire_gil) \ - if (acquire_gil) { \ - PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure(); \ - __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__); \ - PyGILState_Release(__pyx_gilstate_save); \ - } else { \ - __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__); \ + #define __Pyx_RefNannySetupContext(name, acquire_gil)\ + if (acquire_gil) {\ + PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\ + __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\ + PyGILState_Release(__pyx_gilstate_save);\ + } else {\ + __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\ } #else - #define __Pyx_RefNannySetupContext(name, acquire_gil) \ + #define __Pyx_RefNannySetupContext(name, acquire_gil)\ __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__) #endif - #define __Pyx_RefNannyFinishContext() \ + #define __Pyx_RefNannyFinishContext()\ __Pyx_RefNanny->FinishContext(&__pyx_refnanny) #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), __LINE__) #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), __LINE__) @@ -802,84 +1161,107 @@ struct __pyx_obj_4silx_2io_8specfile___pyx_scope_struct_1___iter__ { #define __Pyx_XGOTREF(r) #define __Pyx_XGIVEREF(r) #endif -#define __Pyx_XDECREF_SET(r, v) do { \ - PyObject *tmp = (PyObject *) r; \ - r = v; __Pyx_XDECREF(tmp); \ +#define __Pyx_XDECREF_SET(r, v) do {\ + PyObject *tmp = (PyObject *) r;\ + r = v; __Pyx_XDECREF(tmp);\ } while (0) -#define __Pyx_DECREF_SET(r, v) do { \ - PyObject *tmp = (PyObject *) r; \ - r = v; __Pyx_DECREF(tmp); \ +#define __Pyx_DECREF_SET(r, v) do {\ + PyObject *tmp = (PyObject *) r;\ + r = v; __Pyx_DECREF(tmp);\ } while (0) #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0) #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0) -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { - PyTypeObject* tp = Py_TYPE(obj); - if (likely(tp->tp_getattro)) - return tp->tp_getattro(obj, attr_name); -#if PY_MAJOR_VERSION < 3 - if (likely(tp->tp_getattr)) - return tp->tp_getattr(obj, PyString_AS_STRING(attr_name)); -#endif - return PyObject_GetAttr(obj, attr_name); -} +/* PyObjectGetAttrStr.proto */ +#if CYTHON_USE_TYPE_SLOTS +static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name); #else #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) #endif +/* GetBuiltinName.proto */ static PyObject *__Pyx_GetBuiltinName(PyObject *name); +/* RaiseArgTupleInvalid.proto */ static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); +/* RaiseDoubleKeywords.proto */ static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); -static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[], \ - PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, \ +/* ParseKeywords.proto */ +static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ + PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\ const char* function_name); -#if CYTHON_COMPILING_IN_CPYTHON -#define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o,n,NULL) -static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) { - PyTypeObject* tp = Py_TYPE(obj); - if (likely(tp->tp_setattro)) - return tp->tp_setattro(obj, attr_name, value); -#if PY_MAJOR_VERSION < 3 - if (likely(tp->tp_setattr)) - return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value); -#endif - return PyObject_SetAttr(obj, attr_name, value); -} +/* PyObjectSetAttrStr.proto */ +#if CYTHON_USE_TYPE_SLOTS +#define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o, n, NULL) +static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value); #else #define __Pyx_PyObject_DelAttrStr(o,n) PyObject_DelAttr(o,n) #define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v) #endif +/* PyCFunctionFastCall.proto */ +#if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs); +#else +#define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL) +#endif + +/* PyFunctionFastCall.proto */ +#if CYTHON_FAST_PYCALL +#define __Pyx_PyFunction_FastCall(func, args, nargs)\ + __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs); +#else +#define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs) +#endif +#endif + +/* PyObjectCall.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); #else #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) #endif +/* PyObjectCallMethO.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); #endif +/* PyObjectCallOneArg.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); +/* PyObjectCallNoArg.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); #else #define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL) #endif -static CYTHON_INLINE int __Pyx_PySequence_Contains(PyObject* item, PyObject* seq, int eq) { +/* PySequenceContains.proto */ +static CYTHON_INLINE int __Pyx_PySequence_ContainsTF(PyObject* item, PyObject* seq, int eq) { int result = PySequence_Contains(seq, item); return unlikely(result < 0) ? result : (result == (eq == Py_EQ)); } -#if CYTHON_COMPILING_IN_CPYTHON +/* DictGetItem.proto */ +#if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY +static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key); +#define __Pyx_PyObject_Dict_GetItem(obj, name)\ + (likely(PyDict_CheckExact(obj)) ?\ + __Pyx_PyDict_GetItem(obj, name) : PyObject_GetItem(obj, name)) +#else +#define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) +#define __Pyx_PyObject_Dict_GetItem(obj, name) PyObject_GetItem(obj, name) +#endif + +/* ListCompAppend.proto */ +#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { PyListObject* L = (PyListObject*) list; Py_ssize_t len = Py_SIZE(list); @@ -895,15 +1277,20 @@ static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { #define __Pyx_ListComp_Append(L,x) PyList_Append(L,x) #endif +/* RaiseTooManyValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); +/* RaiseNeedMoreValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); +/* IterFinish.proto */ static CYTHON_INLINE int __Pyx_IterFinish(void); +/* UnpackItemEndCheck.proto */ static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected); -#if CYTHON_COMPILING_IN_CPYTHON +/* ListAppend.proto */ +#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) { PyListObject* L = (PyListObject*) list; Py_ssize_t len = Py_SIZE(list); @@ -919,44 +1306,142 @@ static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) { #define __Pyx_PyList_Append(L,x) PyList_Append(L,x) #endif +/* PyObjectCallMethod1.proto */ static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg); +static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg); +/* append.proto */ static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x); -#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) : \ - (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) : \ +/* PyIntBinop.proto */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace); +#else +#define __Pyx_PyInt_AddObjC(op1, op2, intval, inplace)\ + (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2)) +#endif + +/* GetItemInt.proto */ +#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\ + (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ __Pyx_GetItemInt_Generic(o, to_py_func(i)))) -#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ +#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck); -#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ +#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck); -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); +static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j); static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, int wraparound, int boundscheck); -static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); -static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); +/* PyIntBinop.proto */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, long intval, int inplace); +#else +#define __Pyx_PyInt_SubtractObjC(op1, op2, intval, inplace)\ + (inplace ? PyNumber_InPlaceSubtract(op1, op2) : PyNumber_Subtract(op1, op2)) +#endif +/* PyThreadStateGet.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; +#define __Pyx_PyThreadState_assign __pyx_tstate = __Pyx_PyThreadState_Current; +#define __Pyx_PyErr_Occurred() __pyx_tstate->curexc_type +#else +#define __Pyx_PyThreadState_declare +#define __Pyx_PyThreadState_assign +#define __Pyx_PyErr_Occurred() PyErr_Occurred() +#endif + +/* PyErrFetchRestore.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyErr_Clear() __Pyx_ErrRestore(NULL, NULL, NULL) +#define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#if CYTHON_COMPILING_IN_CPYTHON +#define __Pyx_PyErr_SetNone(exc) (Py_INCREF(exc), __Pyx_ErrRestore((exc), NULL, NULL)) +#else +#define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) +#endif +#else +#define __Pyx_PyErr_Clear() PyErr_Clear() +#define __Pyx_PyErr_SetNone(exc) PyErr_SetNone(exc) +#define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) +#define __Pyx_ErrRestoreInState(tstate, type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetchInState(tstate, type, value, tb) PyErr_Fetch(type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) +#endif + +/* RaiseException.proto */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); -static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb); -static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb); +/* ObjectGetItem.proto */ +#if CYTHON_USE_TYPE_SLOTS +static CYTHON_INLINE PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key); +#else +#define __Pyx_PyObject_GetItem(obj, key) PyObject_GetItem(obj, key) +#endif + +/* SaveResetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +#else +#define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb) +#define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb) +#endif + +/* PyErrExceptionMatches.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err) +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err); +#else +#define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) +#endif +/* GetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb) +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); +#endif +/* GetModuleGlobalName.proto */ static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); -#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x02070000 +/* FastTypeChecks.proto */ +#if CYTHON_COMPILING_IN_CPYTHON +#define __Pyx_TypeCheck(obj, type) __Pyx_IsSubtype(Py_TYPE(obj), (PyTypeObject *)type) +static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b); +static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject *type); +static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *type1, PyObject *type2); +#else +#define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) +#define __Pyx_PyErr_GivenExceptionMatches(err, type) PyErr_GivenExceptionMatches(err, type) +#define __Pyx_PyErr_GivenExceptionMatches2(err, type1, type2) (PyErr_GivenExceptionMatches(err, type1) || PyErr_GivenExceptionMatches(err, type2)) +#endif +#define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) + +/* PyObjectLookupSpecial.proto */ +#if CYTHON_USE_PYTYPE_LOOKUP && CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE PyObject* __Pyx_PyObject_LookupSpecial(PyObject* obj, PyObject* attr_name) { PyObject *res; PyTypeObject *tp = Py_TYPE(obj); @@ -981,12 +1466,15 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_LookupSpecial(PyObject* obj, PyObj #define __Pyx_PyObject_LookupSpecial(o,n) __Pyx_PyObject_GetAttrStr(o,n) #endif +/* None.proto */ static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname); +/* WriteUnraisableException.proto */ static void __Pyx_WriteUnraisable(const char *name, int clineno, int lineno, const char *filename, - int full_traceback); + int full_traceback, int nogil); +/* StringJoin.proto */ #if PY_MAJOR_VERSION < 3 #define __Pyx_PyString_Join __Pyx_PyBytes_Join #define __Pyx_PyBaseString_Join(s, v) (PyUnicode_CheckExact(s) ? PyUnicode_Join(s, v) : __Pyx_PyBytes_Join(s, v)) @@ -1004,36 +1492,47 @@ static void __Pyx_WriteUnraisable(const char *name, int clineno, static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values); #endif -static CYTHON_INLINE int __Pyx_PyDict_Contains(PyObject* item, PyObject* dict, int eq) { +/* PyDictContains.proto */ +static CYTHON_INLINE int __Pyx_PyDict_ContainsTF(PyObject* item, PyObject* dict, int eq) { int result = PyDict_Contains(dict, item); return unlikely(result < 0) ? result : (result == (eq == Py_EQ)); } -#if PY_MAJOR_VERSION >= 3 -static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { - PyObject *value; - value = PyDict_GetItemWithError(d, key); - if (unlikely(!value)) { - if (!PyErr_Occurred()) { - PyObject* args = PyTuple_Pack(1, key); - if (likely(args)) - PyErr_SetObject(PyExc_KeyError, args); - Py_XDECREF(args); - } - return NULL; - } - Py_INCREF(value); - return value; -} +/* PyObjectFormat.proto */ +#if CYTHON_USE_UNICODE_WRITER +static PyObject* __Pyx_PyObject_Format(PyObject* s, PyObject* f); #else - #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) +#define __Pyx_PyObject_Format(s, f) PyObject_Format(s, f) #endif +/* IncludeStringH.proto */ +#include <string.h> + +/* JoinPyUnicode.proto */ +static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_count, Py_ssize_t result_ulength, + Py_UCS4 max_char); + +/* decode_c_string_utf16.proto */ +static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16(const char *s, Py_ssize_t size, const char *errors) { + int byteorder = 0; + return PyUnicode_DecodeUTF16(s, size, errors, &byteorder); +} +static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16LE(const char *s, Py_ssize_t size, const char *errors) { + int byteorder = -1; + return PyUnicode_DecodeUTF16(s, size, errors, &byteorder); +} +static CYTHON_INLINE PyObject *__Pyx_PyUnicode_DecodeUTF16BE(const char *s, Py_ssize_t size, const char *errors) { + int byteorder = 1; + return PyUnicode_DecodeUTF16(s, size, errors, &byteorder); +} + +/* decode_c_bytes.proto */ static CYTHON_INLINE PyObject* __Pyx_decode_c_bytes( const char* cstring, Py_ssize_t length, Py_ssize_t start, Py_ssize_t stop, const char* encoding, const char* errors, PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)); +/* decode_bytes.proto */ static CYTHON_INLINE PyObject* __Pyx_decode_bytes( PyObject* string, Py_ssize_t start, Py_ssize_t stop, const char* encoding, const char* errors, @@ -1043,47 +1542,167 @@ static CYTHON_INLINE PyObject* __Pyx_decode_bytes( start, stop, encoding, errors, decode_func); } -static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); - -#define __Pyx_SetItemInt(o, i, v, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_SetItemInt_Fast(o, (Py_ssize_t)i, v, is_list, wraparound, boundscheck) : \ - (is_list ? (PyErr_SetString(PyExc_IndexError, "list assignment index out of range"), -1) : \ - __Pyx_SetItemInt_Generic(o, to_py_func(i), v))) -static CYTHON_INLINE int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v); -static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v, - int is_list, int wraparound, int boundscheck); - -#include <string.h> +/* PyIntBinop.proto */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, long intval, int inplace); +#else +#define __Pyx_PyInt_EqObjC(op1, op2, intval, inplace)\ + PyObject_RichCompare(op1, op2, Py_EQ) + #endif +/* BufferIndexError.proto */ +static void __Pyx_RaiseBufferIndexError(int axis); + +/* MemviewSliceInit.proto */ +#define __Pyx_BUF_MAX_NDIMS %(BUF_MAX_NDIMS)d +#define __Pyx_MEMVIEW_DIRECT 1 +#define __Pyx_MEMVIEW_PTR 2 +#define __Pyx_MEMVIEW_FULL 4 +#define __Pyx_MEMVIEW_CONTIG 8 +#define __Pyx_MEMVIEW_STRIDED 16 +#define __Pyx_MEMVIEW_FOLLOW 32 +#define __Pyx_IS_C_CONTIG 1 +#define __Pyx_IS_F_CONTIG 2 +static int __Pyx_init_memviewslice( + struct __pyx_memoryview_obj *memview, + int ndim, + __Pyx_memviewslice *memviewslice, + int memview_is_new_reference); +static CYTHON_INLINE int __pyx_add_acquisition_count_locked( + __pyx_atomic_int *acquisition_count, PyThread_type_lock lock); +static CYTHON_INLINE int __pyx_sub_acquisition_count_locked( + __pyx_atomic_int *acquisition_count, PyThread_type_lock lock); +#define __pyx_get_slice_count_pointer(memview) (memview->acquisition_count_aligned_p) +#define __pyx_get_slice_count(memview) (*__pyx_get_slice_count_pointer(memview)) +#define __PYX_INC_MEMVIEW(slice, have_gil) __Pyx_INC_MEMVIEW(slice, have_gil, __LINE__) +#define __PYX_XDEC_MEMVIEW(slice, have_gil) __Pyx_XDEC_MEMVIEW(slice, have_gil, __LINE__) +static CYTHON_INLINE void __Pyx_INC_MEMVIEW(__Pyx_memviewslice *, int, int); +static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *, int, int); + +/* decode_c_string.proto */ static CYTHON_INLINE PyObject* __Pyx_decode_c_string( const char* cstring, Py_ssize_t start, Py_ssize_t stop, const char* encoding, const char* errors, PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)); +/* ArgTypeTest.proto */ +#define __Pyx_ArgTypeTest(obj, type, none_allowed, name, exact)\ + ((likely((Py_TYPE(obj) == type) | (none_allowed && (obj == Py_None)))) ? 1 :\ + __Pyx__ArgTypeTest(obj, type, name, exact)) +static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact); + +/* BytesEquals.proto */ +static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals); + +/* UnicodeEquals.proto */ +static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals); + +/* StrEquals.proto */ +#if PY_MAJOR_VERSION >= 3 +#define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals +#else +#define __Pyx_PyString_Equals __Pyx_PyBytes_Equals +#endif + +/* None.proto */ +static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t, Py_ssize_t); + +/* UnaryNegOverflows.proto */ +#define UNARY_NEG_WOULD_OVERFLOW(x)\ + (((x) < 0) & ((unsigned long)(x) == 0-(unsigned long)(x))) + +static CYTHON_UNUSED int __pyx_array_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/ +static PyObject *__pyx_array_get_memview(struct __pyx_array_obj *); /*proto*/ +/* GetAttr.proto */ +static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *); + +/* GetAttr3.proto */ +static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *, PyObject *, PyObject *); + +/* RaiseNoneIterError.proto */ static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); +/* ExtTypeTest.proto */ +static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); + +/* SwapException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ExceptionSwap(type, value, tb) __Pyx__ExceptionSwap(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb); +#endif + +/* Import.proto */ +static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); + +static CYTHON_UNUSED int __pyx_memoryview_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/ +/* ListExtend.proto */ +static CYTHON_INLINE int __Pyx_PyList_Extend(PyObject* L, PyObject* v) { +#if CYTHON_COMPILING_IN_CPYTHON + PyObject* none = _PyList_Extend((PyListObject*)L, v); + if (unlikely(!none)) + return -1; + Py_DECREF(none); + return 0; +#else + return PyList_SetSlice(L, PY_SSIZE_T_MAX, PY_SSIZE_T_MAX, v); +#endif +} + +/* None.proto */ +static CYTHON_INLINE long __Pyx_div_long(long, long); + +/* ImportFrom.proto */ +static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name); + +/* HasAttr.proto */ +static CYTHON_INLINE int __Pyx_HasAttr(PyObject *, PyObject *); + +/* PyObject_GenericGetAttrNoDict.proto */ +#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 +static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name); +#else +#define __Pyx_PyObject_GenericGetAttrNoDict PyObject_GenericGetAttr +#endif + +/* PyObject_GenericGetAttr.proto */ +#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 +static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name); +#else +#define __Pyx_PyObject_GenericGetAttr PyObject_GenericGetAttr +#endif + +/* SetupReduce.proto */ +static int __Pyx_setup_reduce(PyObject* type_obj); + +/* SetVTable.proto */ +static int __Pyx_SetVtable(PyObject *dict, void *vtable); + +/* CalculateMetaclass.proto */ static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases); +/* Py3ClassCreate.proto */ static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name, PyObject *qualname, PyObject *mkw, PyObject *modname, PyObject *doc); static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases, PyObject *dict, PyObject *mkw, int calculate_metaclass, int allow_py2_metaclass); +/* FetchCommonType.proto */ static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type); +/* CythonFunction.proto */ #define __Pyx_CyFunction_USED 1 -#include <structmember.h> #define __Pyx_CYFUNCTION_STATICMETHOD 0x01 #define __Pyx_CYFUNCTION_CLASSMETHOD 0x02 #define __Pyx_CYFUNCTION_CCLASS 0x04 -#define __Pyx_CyFunction_GetClosure(f) \ +#define __Pyx_CyFunction_GetClosure(f)\ (((__pyx_CyFunctionObject *) (f))->func_closure) -#define __Pyx_CyFunction_GetClassObj(f) \ +#define __Pyx_CyFunction_GetClassObj(f)\ (((__pyx_CyFunctionObject *) (f))->func_classobj) -#define __Pyx_CyFunction_Defaults(type, f) \ +#define __Pyx_CyFunction_Defaults(type, f)\ ((type *)(((__pyx_CyFunctionObject *) (f))->defaults)) -#define __Pyx_CyFunction_SetDefaultsGetter(f, g) \ +#define __Pyx_CyFunction_SetDefaultsGetter(f, g)\ ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g) typedef struct { PyCFunctionObject func; @@ -1107,7 +1726,7 @@ typedef struct { PyObject *func_annotations; } __pyx_CyFunctionObject; static PyTypeObject *__pyx_CyFunctionType = 0; -#define __Pyx_CyFunction_NewEx(ml, flags, qualname, self, module, globals, code) \ +#define __Pyx_CyFunction_NewEx(ml, flags, qualname, self, module, globals, code)\ __Pyx_CyFunction_New(__pyx_CyFunctionType, ml, flags, qualname, self, module, globals, code) static PyObject *__Pyx_CyFunction_New(PyTypeObject *, PyMethodDef *ml, int flags, PyObject* qualname, @@ -1123,11 +1742,30 @@ static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m, PyObject *dict); static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m, PyObject *dict); -static int __Pyx_CyFunction_init(void); +static int __pyx_CyFunction_init(void); + +/* SetNameInClass.proto */ +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 +#define __Pyx_SetNameInClass(ns, name, value)\ + (likely(PyDict_CheckExact(ns)) ? _PyDict_SetItem_KnownHash(ns, name, value, ((PyASCIIObject *) name)->hash) : PyObject_SetItem(ns, name, value)) +#elif CYTHON_COMPILING_IN_CPYTHON +#define __Pyx_SetNameInClass(ns, name, value)\ + (likely(PyDict_CheckExact(ns)) ? PyDict_SetItem(ns, name, value) : PyObject_SetItem(ns, name, value)) +#else +#define __Pyx_SetNameInClass(ns, name, value) PyObject_SetItem(ns, name, value) +#endif +/* CLineInTraceback.proto */ +#ifdef CYTHON_CLINE_IN_TRACEBACK +#define __Pyx_CLineForTraceback(tstate, c_line) (((CYTHON_CLINE_IN_TRACEBACK)) ? c_line : 0) +#else +static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line); +#endif + +/* CodeObjectCache.proto */ typedef struct { - int code_line; PyCodeObject* code_object; + int code_line; } __Pyx_CodeObjectCacheEntry; struct __Pyx_CodeObjectCache { int count; @@ -1139,126 +1777,75 @@ static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int co static PyCodeObject *__pyx_find_code_object(int code_line); static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); +/* AddTraceback.proto */ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename); -static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); +#if PY_MAJOR_VERSION < 3 + static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags); + static void __Pyx_ReleaseBuffer(Py_buffer *view); +#else + #define __Pyx_GetBuffer PyObject_GetBuffer + #define __Pyx_ReleaseBuffer PyBuffer_Release +#endif -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); -static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); +/* BufferStructDeclare.proto */ +typedef struct { + Py_ssize_t shape, strides, suboffsets; +} __Pyx_Buf_DimInfo; +typedef struct { + size_t refcount; + Py_buffer pybuffer; +} __Pyx_Buffer; +typedef struct { + __Pyx_Buffer *rcbuffer; + char *data; + __Pyx_Buf_DimInfo diminfo[8]; +} __Pyx_LocalBuf_ND; -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); +/* MemviewSliceIsContig.proto */ +static int __pyx_memviewslice_is_contig(const __Pyx_memviewslice mvs, char order, int ndim); -static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); +/* OverlappingSlices.proto */ +static int __pyx_slices_overlap(__Pyx_memviewslice *slice1, + __Pyx_memviewslice *slice2, + int ndim, size_t itemsize); -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - #define __Pyx_CREAL(z) ((z).real()) - #define __Pyx_CIMAG(z) ((z).imag()) - #else - #define __Pyx_CREAL(z) (__real__(z)) - #define __Pyx_CIMAG(z) (__imag__(z)) - #endif -#else - #define __Pyx_CREAL(z) ((z).real) - #define __Pyx_CIMAG(z) ((z).imag) -#endif -#if (defined(_WIN32) || defined(__clang__)) && defined(__cplusplus) && CYTHON_CCOMPLEX - #define __Pyx_SET_CREAL(z,x) ((z).real(x)) - #define __Pyx_SET_CIMAG(z,y) ((z).imag(y)) -#else - #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x) - #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y) -#endif +/* Capsule.proto */ +static CYTHON_INLINE PyObject *__pyx_capsule_create(void *p, const char *sig); -static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float); +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); -#if CYTHON_CCOMPLEX - #define __Pyx_c_eqf(a, b) ((a)==(b)) - #define __Pyx_c_sumf(a, b) ((a)+(b)) - #define __Pyx_c_difff(a, b) ((a)-(b)) - #define __Pyx_c_prodf(a, b) ((a)*(b)) - #define __Pyx_c_quotf(a, b) ((a)/(b)) - #define __Pyx_c_negf(a) (-(a)) - #ifdef __cplusplus - #define __Pyx_c_is_zerof(z) ((z)==(float)0) - #define __Pyx_c_conjf(z) (::std::conj(z)) - #if 1 - #define __Pyx_c_absf(z) (::std::abs(z)) - #define __Pyx_c_powf(a, b) (::std::pow(a, b)) - #endif - #else - #define __Pyx_c_is_zerof(z) ((z)==0) - #define __Pyx_c_conjf(z) (conjf(z)) - #if 1 - #define __Pyx_c_absf(z) (cabsf(z)) - #define __Pyx_c_powf(a, b) (cpowf(a, b)) - #endif - #endif -#else - static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex, __pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex); - static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex); - #if 1 - static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex); - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex, __pyx_t_float_complex); - #endif -#endif +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); -static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double); +/* MemviewDtypeToObject.proto */ +static CYTHON_INLINE PyObject *__pyx_memview_get_double(const char *itemp); +static CYTHON_INLINE int __pyx_memview_set_double(const char *itemp, PyObject *obj); -#if CYTHON_CCOMPLEX - #define __Pyx_c_eq(a, b) ((a)==(b)) - #define __Pyx_c_sum(a, b) ((a)+(b)) - #define __Pyx_c_diff(a, b) ((a)-(b)) - #define __Pyx_c_prod(a, b) ((a)*(b)) - #define __Pyx_c_quot(a, b) ((a)/(b)) - #define __Pyx_c_neg(a) (-(a)) - #ifdef __cplusplus - #define __Pyx_c_is_zero(z) ((z)==(double)0) - #define __Pyx_c_conj(z) (::std::conj(z)) - #if 1 - #define __Pyx_c_abs(z) (::std::abs(z)) - #define __Pyx_c_pow(a, b) (::std::pow(a, b)) - #endif - #else - #define __Pyx_c_is_zero(z) ((z)==0) - #define __Pyx_c_conj(z) (conj(z)) - #if 1 - #define __Pyx_c_abs(z) (cabs(z)) - #define __Pyx_c_pow(a, b) (cpow(a, b)) - #endif - #endif -#else - static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex, __pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex); - static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex); - #if 1 - static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex); - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex, __pyx_t_double_complex); - #endif -#endif +/* MemviewSliceCopyTemplate.proto */ +static __Pyx_memviewslice +__pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs, + const char *mode, int ndim, + size_t sizeof_dtype, int contig_flag, + int dtype_is_object); -static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb); +/* CIntFromPy.proto */ +static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); -#define __Pyx_Generator_USED -#include <structmember.h> -#include <frameobject.h> -typedef PyObject *(*__pyx_generator_body_t)(PyObject *, PyObject *); +/* CIntFromPy.proto */ +static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); + +/* CIntFromPy.proto */ +static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *); + +/* CoroutineBase.proto */ +typedef PyObject *(*__pyx_coroutine_body_t)(PyObject *, PyThreadState *, PyObject *); typedef struct { PyObject_HEAD - __pyx_generator_body_t body; + __pyx_coroutine_body_t body; PyObject *closure; PyObject *exc_type; PyObject *exc_value; @@ -1268,64 +1855,107 @@ typedef struct { PyObject *yieldfrom; PyObject *gi_name; PyObject *gi_qualname; + PyObject *gi_modulename; + PyObject *gi_code; int resume_label; char is_running; -} __pyx_GeneratorObject; -static __pyx_GeneratorObject *__Pyx_Generator_New(__pyx_generator_body_t body, - PyObject *closure, PyObject *name, PyObject *qualname); -static int __pyx_Generator_init(void); -static int __Pyx_Generator_clear(PyObject* self); -#if 1 || PY_VERSION_HEX < 0x030300B0 -static int __Pyx_PyGen_FetchStopIterationValue(PyObject **pvalue); +} __pyx_CoroutineObject; +static __pyx_CoroutineObject *__Pyx__Coroutine_New( + PyTypeObject *type, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure, + PyObject *name, PyObject *qualname, PyObject *module_name); +static __pyx_CoroutineObject *__Pyx__Coroutine_NewInit( + __pyx_CoroutineObject *gen, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure, + PyObject *name, PyObject *qualname, PyObject *module_name); +static int __Pyx_Coroutine_clear(PyObject *self); +static PyObject *__Pyx_Coroutine_Send(PyObject *self, PyObject *value); +static PyObject *__Pyx_Coroutine_Close(PyObject *self); +static PyObject *__Pyx_Coroutine_Throw(PyObject *gen, PyObject *args); +#define __Pyx_Coroutine_SwapException(self) {\ + __Pyx_ExceptionSwap(&(self)->exc_type, &(self)->exc_value, &(self)->exc_traceback);\ + __Pyx_Coroutine_ResetFrameBackpointer(self);\ + } +#define __Pyx_Coroutine_ResetAndClearException(self) {\ + __Pyx_ExceptionReset((self)->exc_type, (self)->exc_value, (self)->exc_traceback);\ + (self)->exc_type = (self)->exc_value = (self)->exc_traceback = NULL;\ + } +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyGen_FetchStopIterationValue(pvalue)\ + __Pyx_PyGen__FetchStopIterationValue(__pyx_tstate, pvalue) #else -#define __Pyx_PyGen_FetchStopIterationValue(pvalue) PyGen_FetchStopIterationValue(pvalue) +#define __Pyx_PyGen_FetchStopIterationValue(pvalue)\ + __Pyx_PyGen__FetchStopIterationValue(__Pyx_PyThreadState_Current, pvalue) #endif +static int __Pyx_PyGen__FetchStopIterationValue(PyThreadState *tstate, PyObject **pvalue); +static CYTHON_INLINE void __Pyx_Coroutine_ResetFrameBackpointer(__pyx_CoroutineObject *self); -static int __Pyx_check_binary_version(void); - -#if !defined(__Pyx_PyIdentifier_FromString) -#if PY_MAJOR_VERSION < 3 - #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s) -#else - #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s) -#endif -#endif +/* PatchModuleWithCoroutine.proto */ +static PyObject* __Pyx_Coroutine_patch_module(PyObject* module, const char* py_code); -static PyObject *__Pyx_ImportModule(const char *name); +/* PatchGeneratorABC.proto */ +static int __Pyx_patch_abc(void); -static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict); +/* Generator.proto */ +#define __Pyx_Generator_USED +static PyTypeObject *__pyx_GeneratorType = 0; +#define __Pyx_Generator_CheckExact(obj) (Py_TYPE(obj) == __pyx_GeneratorType) +#define __Pyx_Generator_New(body, code, closure, name, qualname, module_name)\ + __Pyx__Coroutine_New(__pyx_GeneratorType, body, code, closure, name, qualname, module_name) +static PyObject *__Pyx_Generator_Next(PyObject *self); +static int __pyx_Generator_init(void); -static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); +/* IsLittleEndian.proto */ +static CYTHON_INLINE int __Pyx_Is_Little_Endian(void); +/* BufferFormatCheck.proto */ +static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts); +static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, + __Pyx_BufFmt_StackElem* stack, + __Pyx_TypeInfo* type); -/* Module declarations from 'cpython.buffer' */ +/* TypeInfoCompare.proto */ +static int __pyx_typeinfo_cmp(__Pyx_TypeInfo *a, __Pyx_TypeInfo *b); -/* Module declarations from 'cpython.ref' */ +/* MemviewSliceValidateAndInit.proto */ +static int __Pyx_ValidateAndInit_memviewslice( + int *axes_specs, + int c_or_f_flag, + int buf_flags, + int ndim, + __Pyx_TypeInfo *dtype, + __Pyx_BufFmt_StackElem stack[], + __Pyx_memviewslice *memviewslice, + PyObject *original_obj); -/* Module declarations from 'libc.string' */ +/* ObjectToMemviewSlice.proto */ +static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dsds_double(PyObject *, int writable_flag); -/* Module declarations from 'libc.stdio' */ +/* ObjectToMemviewSlice.proto */ +static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_ds_double(PyObject *, int writable_flag); -/* Module declarations from 'cpython.object' */ +/* CheckBinaryVersion.proto */ +static int __Pyx_check_binary_version(void); -/* Module declarations from '__builtin__' */ +/* InitStrings.proto */ +static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); -/* Module declarations from 'cpython.type' */ -static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0; +static PyObject *__pyx_array_get_memview(struct __pyx_array_obj *__pyx_v_self); /* proto*/ +static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index); /* proto*/ +static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj); /* proto*/ +static PyObject *__pyx_memoryview_setitem_slice_assignment(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_dst, PyObject *__pyx_v_src); /* proto*/ +static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memoryview_obj *__pyx_v_self, struct __pyx_memoryview_obj *__pyx_v_dst, PyObject *__pyx_v_value); /* proto*/ +static PyObject *__pyx_memoryview_setitem_indexed(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto*/ +static PyObject *__pyx_memoryview_convert_item_to_object(struct __pyx_memoryview_obj *__pyx_v_self, char *__pyx_v_itemp); /* proto*/ +static PyObject *__pyx_memoryview_assign_item_from_object(struct __pyx_memoryview_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value); /* proto*/ +static PyObject *__pyx_memoryviewslice_convert_item_to_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp); /* proto*/ +static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memoryviewslice_obj *__pyx_v_self, char *__pyx_v_itemp, PyObject *__pyx_v_value); /* proto*/ -/* Module declarations from 'libc.stdlib' */ +/* Module declarations from 'cython.view' */ -/* Module declarations from 'numpy' */ +/* Module declarations from 'cython' */ -/* Module declarations from 'numpy' */ -static PyTypeObject *__pyx_ptype_5numpy_dtype = 0; -static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0; -static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0; -static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0; -static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0; -static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/ +/* Module declarations from 'libc.string' */ -/* Module declarations from 'cython' */ +/* Module declarations from 'libc.stdlib' */ /* Module declarations from 'silx.io.specfile_wrapper' */ @@ -1333,11 +1963,56 @@ static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, cha static PyTypeObject *__pyx_ptype_4silx_2io_8specfile_SpecFile = 0; static PyTypeObject *__pyx_ptype_4silx_2io_8specfile___pyx_scope_struct____iter__ = 0; static PyTypeObject *__pyx_ptype_4silx_2io_8specfile___pyx_scope_struct_1___iter__ = 0; +static PyTypeObject *__pyx_array_type = 0; +static PyTypeObject *__pyx_MemviewEnum_type = 0; +static PyTypeObject *__pyx_memoryview_type = 0; +static PyTypeObject *__pyx_memoryviewslice_type = 0; +static PyObject *generic = 0; +static PyObject *strided = 0; +static PyObject *indirect = 0; +static PyObject *contiguous = 0; +static PyObject *indirect_contiguous = 0; +static int __pyx_memoryview_thread_locks_used; +static PyThread_type_lock __pyx_memoryview_thread_locks[8]; +static struct __pyx_array_obj *__pyx_array_new(PyObject *, Py_ssize_t, char *, char *, char *); /*proto*/ +static void *__pyx_align_pointer(void *, size_t); /*proto*/ +static PyObject *__pyx_memoryview_new(PyObject *, int, int, __Pyx_TypeInfo *); /*proto*/ +static CYTHON_INLINE int __pyx_memoryview_check(PyObject *); /*proto*/ +static PyObject *_unellipsify(PyObject *, int); /*proto*/ +static PyObject *assert_direct_dimensions(Py_ssize_t *, int); /*proto*/ +static struct __pyx_memoryview_obj *__pyx_memview_slice(struct __pyx_memoryview_obj *, PyObject *); /*proto*/ +static int __pyx_memoryview_slice_memviewslice(__Pyx_memviewslice *, Py_ssize_t, Py_ssize_t, Py_ssize_t, int, int, int *, Py_ssize_t, Py_ssize_t, Py_ssize_t, int, int, int, int); /*proto*/ +static char *__pyx_pybuffer_index(Py_buffer *, char *, Py_ssize_t, Py_ssize_t); /*proto*/ +static int __pyx_memslice_transpose(__Pyx_memviewslice *); /*proto*/ +static PyObject *__pyx_memoryview_fromslice(__Pyx_memviewslice, int, PyObject *(*)(char *), int (*)(char *, PyObject *), int); /*proto*/ +static __Pyx_memviewslice *__pyx_memoryview_get_slice_from_memoryview(struct __pyx_memoryview_obj *, __Pyx_memviewslice *); /*proto*/ +static void __pyx_memoryview_slice_copy(struct __pyx_memoryview_obj *, __Pyx_memviewslice *); /*proto*/ +static PyObject *__pyx_memoryview_copy_object(struct __pyx_memoryview_obj *); /*proto*/ +static PyObject *__pyx_memoryview_copy_object_from_slice(struct __pyx_memoryview_obj *, __Pyx_memviewslice *); /*proto*/ +static Py_ssize_t abs_py_ssize_t(Py_ssize_t); /*proto*/ +static char __pyx_get_best_slice_order(__Pyx_memviewslice *, int); /*proto*/ +static void _copy_strided_to_strided(char *, Py_ssize_t *, char *, Py_ssize_t *, Py_ssize_t *, Py_ssize_t *, int, size_t); /*proto*/ +static void copy_strided_to_strided(__Pyx_memviewslice *, __Pyx_memviewslice *, int, size_t); /*proto*/ +static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *, int); /*proto*/ +static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *, Py_ssize_t *, Py_ssize_t, int, char); /*proto*/ +static void *__pyx_memoryview_copy_data_to_temp(__Pyx_memviewslice *, __Pyx_memviewslice *, char, int); /*proto*/ +static int __pyx_memoryview_err_extents(int, Py_ssize_t, Py_ssize_t); /*proto*/ +static int __pyx_memoryview_err_dim(PyObject *, char *, int); /*proto*/ +static int __pyx_memoryview_err(PyObject *, char *); /*proto*/ +static int __pyx_memoryview_copy_contents(__Pyx_memviewslice, __Pyx_memviewslice, int, int, int); /*proto*/ +static void __pyx_memoryview_broadcast_leading(__Pyx_memviewslice *, int, int); /*proto*/ +static void __pyx_memoryview_refcount_copying(__Pyx_memviewslice *, int, int, int); /*proto*/ +static void __pyx_memoryview_refcount_objects_in_slice_with_gil(char *, Py_ssize_t *, Py_ssize_t *, int, int); /*proto*/ +static void __pyx_memoryview_refcount_objects_in_slice(char *, Py_ssize_t *, Py_ssize_t *, int, int); /*proto*/ +static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *, int, size_t, void *, int); /*proto*/ +static void __pyx_memoryview__slice_assign_scalar(char *, Py_ssize_t *, Py_ssize_t *, int, size_t, void *); /*proto*/ +static PyObject *__pyx_unpickle_Enum__set_state(struct __pyx_MemviewEnum_obj *, PyObject *); /*proto*/ +static __Pyx_TypeInfo __Pyx_TypeInfo_double = { "double", NULL, sizeof(double), { 0 }, 0, 'R', 0, 0 }; #define __Pyx_MODULE_NAME "silx.io.specfile" +extern int __pyx_module_is_main_silx__io__specfile; int __pyx_module_is_main_silx__io__specfile = 0; /* Implementation of 'silx.io.specfile' */ -static PyObject *__pyx_builtin_Exception; static PyObject *__pyx_builtin_MemoryError; static PyObject *__pyx_builtin_IOError; static PyObject *__pyx_builtin_KeyError; @@ -1351,357 +2026,350 @@ static PyObject *__pyx_builtin_open; static PyObject *__pyx_builtin_enumerate; static PyObject *__pyx_builtin_ValueError; static PyObject *__pyx_builtin_AttributeError; -static PyObject *__pyx_builtin_RuntimeError; -static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_scan); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_2_parse_channels(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_4_parse_calibration(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_6__len__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_8__getitem__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_10__iter__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile__add_or_concatenate(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dictionary, PyObject *__pyx_v_key, PyObject *__pyx_v_value); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_specfile, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_2index(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_4number(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_6order(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_8header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_10scan_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_12file_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_14scan_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_16mca_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_18file_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_20labels(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_22data(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_24mca(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_26motor_names(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_28motor_positions(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_30record_exists_in_hdr(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_record); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_32data_line(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_line_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_34data_column_by_name(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_label); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_36motor_position_by_name(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_name); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_2_string_to_char_star(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_string_); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_4is_specfile(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_filename); /* proto */ -static int __pyx_pf_4silx_2io_8specfile_8SpecFile___cinit__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_filename); /* proto */ -static int __pyx_pf_4silx_2io_8specfile_8SpecFile_2__init__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_filename); /* proto */ -static void __pyx_pf_4silx_2io_8specfile_8SpecFile_4__dealloc__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_6close(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ -static Py_ssize_t __pyx_pf_4silx_2io_8specfile_8SpecFile_8__len__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_10__iter__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_13__getitem__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_15keys(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ -static int __pyx_pf_4silx_2io_8specfile_8SpecFile_17__contains__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_19_get_error_string(CYTHON_UNUSED struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_error_code); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_21_handle_error(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_error_code); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_23index(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_number, PyObject *__pyx_v_scan_order); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_25number(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_27order(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_29_list(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_31list(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_33data(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_35data_column_by_name(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_label); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_37scan_header(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_39file_header(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_41columns(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_43command(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_45date(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_47labels(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_49motor_names(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_51motor_positions(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_53motor_position_by_name(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_name); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_55number_of_mca(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_57mca_calibration(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ -static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_59get_mca(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_mca_index); /* proto */ -static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ -static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */ -static PyObject *__pyx_tp_new_4silx_2io_8specfile_SpecFile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static PyObject *__pyx_tp_new_4silx_2io_8specfile___pyx_scope_struct____iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static PyObject *__pyx_tp_new_4silx_2io_8specfile___pyx_scope_struct_1___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static char __pyx_k_[] = "\n"; -static char __pyx_k_2[] = " {2,}"; -static char __pyx_k_3[] = "3"; -static char __pyx_k_B[] = "B"; -static char __pyx_k_F[] = "#F "; -static char __pyx_k_H[] = "H"; -static char __pyx_k_I[] = "I"; -static char __pyx_k_L[] = "L"; -static char __pyx_k_O[] = "O"; -static char __pyx_k_Q[] = "Q"; -static char __pyx_k_S[] = "#S "; -static char __pyx_k_b[] = "b"; -static char __pyx_k_d[] = "d"; -static char __pyx_k_f[] = "f"; -static char __pyx_k_g[] = "g"; -static char __pyx_k_h[] = "h"; -static char __pyx_k_i[] = "i"; -static char __pyx_k_l[] = "l"; -static char __pyx_k_q[] = "q"; -static char __pyx_k_w[] = "#(\\w+) *(.*)"; -static char __pyx_k_Zd[] = "Zd"; -static char __pyx_k_Zf[] = "Zf"; -static char __pyx_k_Zg[] = "Zg"; -static char __pyx_k__7[] = "#"; -static char __pyx_k_os[] = "os"; -static char __pyx_k_rb[] = "rb"; -static char __pyx_k_re[] = "re"; -static char __pyx_k_MCA[] = "MCA"; -static char __pyx_k_MIT[] = "MIT"; -static char __pyx_k__14[] = " "; -static char __pyx_k__28[] = "."; -static char __pyx_k__30[] = "', '"; -static char __pyx_k__31[] = "'"; -static char __pyx_k__32[] = ""; -static char __pyx_k_d_d[] = "%d.%d"; -static char __pyx_k_doc[] = "__doc__"; -static char __pyx_k_key[] = "key"; -static char __pyx_k_len[] = "__len__"; -static char __pyx_k_map[] = "map"; -static char __pyx_k_mca[] = "_mca"; -static char __pyx_k_msg[] = "msg"; -static char __pyx_k_ret[] = "ret"; -static char __pyx_k_sub[] = "sub"; -static char __pyx_k_sys[] = "sys"; -static char __pyx_k_w_2[] = "#@(\\w+) *(.*)"; -static char __pyx_k_Scan[] = "Scan"; -static char __pyx_k_args[] = "args"; -static char __pyx_k_data[] = "_data"; -static char __pyx_k_date[] = "__date__"; -static char __pyx_k_exit[] = "__exit__"; -static char __pyx_k_hkey[] = "hkey"; -static char __pyx_k_init[] = "__init__"; -static char __pyx_k_iter[] = "__iter__"; -static char __pyx_k_join[] = "join"; -static char __pyx_k_keys[] = "keys"; -static char __pyx_k_line[] = "line"; -static char __pyx_k_list[] = "_list"; -static char __pyx_k_main[] = "__main__"; -static char __pyx_k_name[] = "name"; -static char __pyx_k_open[] = "open"; -static char __pyx_k_path[] = "path"; -static char __pyx_k_read[] = "read"; -static char __pyx_k_scan[] = "scan"; -static char __pyx_k_self[] = "self"; -static char __pyx_k_send[] = "send"; -static char __pyx_k_stop[] = "stop"; -static char __pyx_k_test[] = "__test__"; -static char __pyx_k_CALIB[] = "CALIB"; -static char __pyx_k_CHANN[] = "CHANN"; -static char __pyx_k_ascii[] = "ascii"; -static char __pyx_k_chunk[] = "chunk"; -static char __pyx_k_close[] = "close"; -static char __pyx_k_dtype[] = "dtype"; -static char __pyx_k_empty[] = "empty"; -static char __pyx_k_enter[] = "__enter__"; -static char __pyx_k_group[] = "group"; -static char __pyx_k_index[] = "index"; -static char __pyx_k_label[] = "label"; -static char __pyx_k_match[] = "match"; -static char __pyx_k_mca_2[] = "mca"; -static char __pyx_k_numpy[] = "numpy"; -static char __pyx_k_order[] = "order"; -static char __pyx_k_range[] = "range"; -static char __pyx_k_shape[] = "shape"; -static char __pyx_k_split[] = "split"; -static char __pyx_k_start[] = "start"; -static char __pyx_k_strip[] = "strip"; -static char __pyx_k_throw[] = "throw"; -static char __pyx_k_value[] = "value"; -static char __pyx_k_ERRORS[] = "ERRORS"; -static char __pyx_k_append[] = "append"; -static char __pyx_k_data_2[] = "data"; -static char __pyx_k_decode[] = "decode"; -static char __pyx_k_double[] = "double"; -static char __pyx_k_encode[] = "encode"; -static char __pyx_k_header[] = "_header"; -static char __pyx_k_hvalue[] = "hvalue"; -static char __pyx_k_import[] = "__import__"; -static char __pyx_k_isfile[] = "isfile"; -static char __pyx_k_labels[] = "_labels"; -static char __pyx_k_length[] = "length"; -static char __pyx_k_logger[] = "_logger"; -static char __pyx_k_lstrip[] = "lstrip"; -static char __pyx_k_module[] = "__module__"; -static char __pyx_k_name_2[] = "__name__"; -static char __pyx_k_number[] = "number"; -static char __pyx_k_object[] = "object"; -static char __pyx_k_record[] = "record"; -static char __pyx_k_scan_2[] = "_scan"; -static char __pyx_k_search[] = "search"; -static char __pyx_k_string[] = "string_"; -static char __pyx_k_IOError[] = "IOError"; -static char __pyx_k_SfError[] = "SfError"; -static char __pyx_k_authors[] = "__authors__"; -static char __pyx_k_get_mca[] = "get_mca"; -static char __pyx_k_getitem[] = "__getitem__"; -static char __pyx_k_index_2[] = "_index"; -static char __pyx_k_license[] = "__license__"; -static char __pyx_k_logging[] = "logging"; -static char __pyx_k_order_2[] = "_order"; -static char __pyx_k_os_path[] = "os.path"; -static char __pyx_k_prepare[] = "__prepare__"; -static char __pyx_k_version[] = "version"; -static char __pyx_k_warning[] = "warning"; -static char __pyx_k_KeyError[] = "KeyError"; -static char __pyx_k_L_header[] = "L_header"; -static char __pyx_k_P_Knobel[] = "P. Knobel"; -static char __pyx_k_Scan_mca[] = "Scan.mca"; -static char __pyx_k_channels[] = "channels"; -static char __pyx_k_filename[] = "filename"; -static char __pyx_k_header_2[] = "header"; -static char __pyx_k_labels_2[] = "labels"; -static char __pyx_k_number_2[] = "_number"; -static char __pyx_k_property[] = "property"; -static char __pyx_k_qualname[] = "__qualname__"; -static char __pyx_k_specfile[] = "_specfile"; -static char __pyx_k_Exception[] = "Exception"; -static char __pyx_k_MCA___len[] = "MCA.__len__"; -static char __pyx_k_Scan_data[] = "Scan.data"; -static char __pyx_k_TypeError[] = "TypeError"; -static char __pyx_k_data_line[] = "data_line"; -static char __pyx_k_enumerate[] = "enumerate"; -static char __pyx_k_getLogger[] = "getLogger"; -static char __pyx_k_increment[] = "increment"; -static char __pyx_k_match_mca[] = "match_mca"; -static char __pyx_k_mca_index[] = "mca_index"; -static char __pyx_k_metaclass[] = "__metaclass__"; -static char __pyx_k_transpose[] = "transpose"; -static char __pyx_k_11_08_2017[] = "11/08/2017"; -static char __pyx_k_IndexError[] = "IndexError"; -static char __pyx_k_MCA___init[] = "MCA.__init__"; -static char __pyx_k_MCA___iter[] = "MCA.__iter__"; -static char __pyx_k_Scan_index[] = "Scan.index"; -static char __pyx_k_Scan_order[] = "Scan.order"; -static char __pyx_k_Valid_keys[] = "\nValid keys: '"; -static char __pyx_k_ValueError[] = "ValueError"; -static char __pyx_k_calib_line[] = "calib_line"; -static char __pyx_k_chann_line[] = "chann_line"; -static char __pyx_k_dictionary[] = "dictionary"; -static char __pyx_k_line_index[] = "line_index"; -static char __pyx_k_scan_index[] = "scan_index"; -static char __pyx_k_scan_order[] = "scan_order"; -static char __pyx_k_specfile_2[] = "specfile"; -static char __pyx_k_startswith[] = "startswith"; -static char __pyx_k_MemoryError[] = "MemoryError"; -static char __pyx_k_Scan___init[] = "Scan.__init__"; -static char __pyx_k_Scan_header[] = "Scan.header"; -static char __pyx_k_Scan_labels[] = "Scan.labels"; -static char __pyx_k_Scan_number[] = "Scan.number"; -static char __pyx_k_calib_lines[] = "calib_lines"; -static char __pyx_k_calibration[] = "calibration"; -static char __pyx_k_chann_lines[] = "chann_lines"; -static char __pyx_k_file_header[] = "file_header"; -static char __pyx_k_is_specfile[] = "is_specfile"; -static char __pyx_k_motor_names[] = "motor_names"; -static char __pyx_k_scan_header[] = "scan_header"; -static char __pyx_k_scan_number[] = "scan_number"; -static char __pyx_k_RuntimeError[] = "RuntimeError"; -static char __pyx_k_SfNoMcaError[] = "SfNoMcaError"; -static char __pyx_k_handle_error[] = "_handle_error"; -static char __pyx_k_version_info[] = "version_info"; -static char __pyx_k_MCA___getitem[] = "MCA.__getitem__"; -static char __pyx_k_SfErrFileOpen[] = "SfErrFileOpen"; -static char __pyx_k_SfErrFileRead[] = "SfErrFileRead"; -static char __pyx_k_motor_names_2[] = "_motor_names"; -static char __pyx_k_number_of_mca[] = "number_of_mca"; -static char __pyx_k_AttributeError[] = "AttributeError"; -static char __pyx_k_Scan_data_line[] = "Scan.data_line"; -static char __pyx_k_SfErrFileClose[] = "SfErrFileClose"; -static char __pyx_k_SfErrFileWrite[] = "SfErrFileWrite"; -static char __pyx_k_SfErrLineEmpty[] = "SfErrLineEmpty"; -static char __pyx_k_parse_channels[] = "_parse_channels"; -static char __pyx_k_SpecFile___iter[] = "SpecFile.__iter__"; -static char __pyx_k_mca_header_dict[] = "mca_header_dict"; -static char __pyx_k_motor_positions[] = "motor_positions"; -static char __pyx_k_SF_ERR_FILE_OPEN[] = "SF_ERR_FILE_OPEN"; -static char __pyx_k_SF_ERR_NO_ERRORS[] = "SF_ERR_NO_ERRORS"; -static char __pyx_k_Scan_file_header[] = "Scan.file_header"; -static char __pyx_k_Scan_motor_names[] = "Scan.motor_names"; -static char __pyx_k_Scan_scan_header[] = "Scan.scan_header"; -static char __pyx_k_SfErrColNotFound[] = "SfErrColNotFound"; -static char __pyx_k_SfErrMcaNotFound[] = "SfErrMcaNotFound"; -static char __pyx_k_SfErrMemoryAlloc[] = "SfErrMemoryAlloc"; -static char __pyx_k_all_calib_values[] = "all_calib_values"; -static char __pyx_k_all_chann_values[] = "all_chann_values"; -static char __pyx_k_file_header_dict[] = "_file_header_dict"; -static char __pyx_k_get_error_string[] = "_get_error_string"; -static char __pyx_k_scan_header_dict[] = "_scan_header_dict"; -static char __pyx_k_silx_io_specfile[] = "silx.io.specfile"; -static char __pyx_k_SfErrLineNotFound[] = "SfErrLineNotFound"; -static char __pyx_k_SfErrScanNotFound[] = "SfErrScanNotFound"; -static char __pyx_k_SfErrUserNotFound[] = "SfErrUserNotFound"; -static char __pyx_k_file_header_lines[] = "_file_header_lines"; -static char __pyx_k_mca_header_dict_2[] = "_mca_header_dict"; -static char __pyx_k_motor_positions_2[] = "_motor_positions"; -static char __pyx_k_parse_calibration[] = "_parse_calibration"; -static char __pyx_k_scan_header_lines[] = "_scan_header_lines"; -static char __pyx_k_SfErrLabelNotFound[] = "SfErrLabelNotFound"; -static char __pyx_k_SfErrMotorNotFound[] = "SfErrMotorNotFound"; -static char __pyx_k_SfNoMca_returned_1[] = "(SfNoMca returned -1)"; -static char __pyx_k_add_or_concatenate[] = "_add_or_concatenate"; -static char __pyx_k_file_header_dict_2[] = "file_header_dict"; -static char __pyx_k_scan_header_dict_2[] = "scan_header_dict"; -static char __pyx_k_MCA__parse_channels[] = "MCA._parse_channels"; -static char __pyx_k_SfErrHeaderNotFound[] = "SfErrHeaderNotFound"; -static char __pyx_k_data_column_by_name[] = "data_column_by_name"; -static char __pyx_k_string_to_char_star[] = "_string_to_char_star"; -static char __pyx_k_Scan_mca_header_dict[] = "Scan.mca_header_dict"; -static char __pyx_k_Scan_motor_positions[] = "Scan.motor_positions"; -static char __pyx_k_record_exists_in_hdr[] = "record_exists_in_hdr"; -static char __pyx_k_SF_ERR_SCAN_NOT_FOUND[] = "SF_ERR_SCAN_NOT_FOUND"; -static char __pyx_k_Scan_file_header_dict[] = "Scan.file_header_dict"; -static char __pyx_k_Scan_scan_header_dict[] = "Scan.scan_header_dict"; -static char __pyx_k_SfErrPositionNotFound[] = "SfErrPositionNotFound"; -static char __pyx_k_one_line_calib_values[] = "one_line_calib_values"; -static char __pyx_k_one_line_chann_values[] = "one_line_chann_values"; -static char __pyx_k_MCA__parse_calibration[] = "MCA._parse_calibration"; -static char __pyx_k_motor_position_by_name[] = "motor_position_by_name"; -static char __pyx_k_Scan_data_column_by_name[] = "Scan.data_column_by_name"; -static char __pyx_k_Scan_record_exists_in_hdr[] = "Scan.record_exists_in_hdr"; -static char __pyx_k_Scan_motor_position_by_name[] = "Scan.motor_position_by_name"; -static char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous"; -static char __pyx_k_Error_while_closing_SpecFile[] = "Error while closing SpecFile"; -static char __pyx_k_number_and_M_the_order_eg_2_3[] = " number and M the order (eg '2.3')."; -static char __pyx_k_MCA_index_must_be_in_range_0_d[] = "MCA index must be in range 0-%d"; -static char __pyx_k_param_specfile_Parent_SpecFile[] = "\n\n :param specfile: Parent SpecFile from which this scan is extracted.\n :type specfile: :class:`SpecFile`\n :param scan_index: Unique index defining the scan in the SpecFile\n :type scan_index: int\n\n Interface to access a SpecFile scan\n\n A scan is a block of descriptive header lines followed by a 2D data array.\n\n Following three ways of accessing a scan are equivalent::\n\n sf = SpecFile(\"/path/to/specfile.dat\")\n\n # Explicit class instantiation\n scan2 = Scan(sf, scan_index=2)\n\n # 0-based index on a SpecFile object\n scan2 = sf[2]\n\n # Using a \"n.m\" key (scan number starting with 1, scan order)\n scan2 = sf[\"3.1\"]\n "; -static char __pyx_k_Base_exception_inherited_by_all[] = "Base exception inherited by all exceptions raised when a\n C function from the legacy SpecFile library returns an error\n code.\n "; -static char __pyx_k_Scan_index_must_be_in_range_0_d[] = "Scan index must be in range 0-%d"; -static char __pyx_k_The_scan_identification_key_can[] = "The scan identification key can be an integer representing "; -static char __pyx_k_This_module_is_a_cython_binding[] = "\nThis module is a cython binding to wrap the C SpecFile library, to access\nSpecFile data within a python program.\n\nDocumentation for the original C library SpecFile can be found on the ESRF\nwebsite:\n`The manual for the SpecFile Library <http://www.esrf.eu/files/live/sites/www/files/Instrumentation/software/beamline-control/BLISS/documentation/SpecFileManual.pdf>`_\n\nExamples\n========\n\nStart by importing :class:`SpecFile` and instantiate it:\n\n.. code-block:: python\n\n from silx.io.specfile import SpecFile\n\n sf = SpecFile(\"test.dat\")\n\nA :class:`SpecFile` instance can be accessed like a dictionary to obtain a\n:class:`Scan` instance.\n\nIf the key is a string representing two values\nseparated by a dot (e.g. ``\"1.2\"``), they will be treated as the scan number\n(``#S`` header line) and the scan order::\n\n # get second occurrence of scan \"#S 1\"\n myscan = sf[\"1.2\"]\n\n # access scan data as a numpy array\n nlines, ncolumns = myscan.data.shape\n\nIf the key is an integer, it will be treated as a 0-based index::\n\n first_scan = sf[0]\n second_scan = sf[1]\n\nIt is also possible to browse through all scans using :class:`SpecFile` as\nan iterator::\n\n for scan in sf:\n print(scan.scan_header_dict['S'])\n\nMCA spectra can be selectively loaded using an instance of :class:`MCA`\nprovided by :class:`Scan`::\n\n # Only one MCA spectrum is loaded in memory\n second_mca = first_scan.mca[1]\n\n # Iterating trough all MCA spectra in a scan:\n for mca_data in first_scan.mca:\n print(sum(mca_data))\n\nClasses\n=======\n\n- :class:`SpecFile`\n- :class:`Scan`\n- :class:`MCA`\n\nExceptions\n==========\n\n- :class:`SfError`\n- :class:`SfErrMemoryAlloc`\n- :class:`SfErrFileOpen`\n- :class:`SfErrFileClose`\n- :class:`SfErrFileRead`\n- :class:`SfErrFileWrite`\n- :class:`SfErrLineNotFound`\n- :class:`SfErrScanNotFound`\n- :class:`SfErrHeaderNotFound`\n- :class:`SfErrLabelNotFound`\n- :class:`SfErrMotorNotFound`""\n- :class:`SfErrPositionNotFound`\n- :class:`SfErrLineEmpty`\n- :class:`SfErrUserNotFound`\n- :class:`SfErrColNotFound`\n- :class:`SfErrMcaNotFound`\n\n"; -static char __pyx_k_param_scan_Parent_Scan_instance[] = "\n\n :param scan: Parent Scan instance\n :type scan: :class:`Scan`\n\n :var calibration: MCA calibration :math:`(a, b, c)` (as in\n :math:`a + b x + c x\302\262`) from ``#@CALIB`` scan header.\n :type calibration: list of 3 floats, default ``[0., 1., 0.]``\n :var channels: MCA channels list from ``#@CHANN`` scan header.\n In the absence of a ``#@CHANN`` header, this attribute is a list\n ``[0, \342\200\246, N-1]`` where ``N`` is the length of the first spectrum.\n In the absence of MCA spectra, this attribute defaults to ``None``.\n :type channels: list of int\n\n This class provides access to Multi-Channel Analysis data. A :class:`MCA`\n instance can be indexed to access 1D numpy arrays representing single\n MCA\302\240spectra.\n\n To create a :class:`MCA` instance, you must provide a parent :class:`Scan`\n instance, which in turn will provide a reference to the original\n :class:`SpecFile` instance::\n\n sf = SpecFile(\"/path/to/specfile.dat\")\n scan2 = Scan(sf, scan_index=2)\n mcas_in_scan2 = MCA(scan2)\n for i in len(mcas_in_scan2):\n mca_data = mcas_in_scan2[i]\n ... # do some something with mca_data (1D numpy array)\n\n A more pythonic way to do the same work, without having to explicitly\n instantiate ``scan`` and ``mcas_in_scan``, would be::\n\n sf = SpecFile(\"specfilename.dat\")\n # scan2 from previous example can be referred to as sf[2]\n # mcas_in_scan2 from previous example can be referred to as scan2.mca\n for mca_data in sf[2].mca:\n ... # do some something with mca_data (1D numpy array)\n\n "; -static char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)"; -static char __pyx_k_users_knobel_git_silx_silx_io_s[] = "/users/knobel/git/silx/silx/io/specfile.pyx"; -static char __pyx_k_Cannot_get_data_column_s_in_scan[] = "Cannot get data column %s in scan %d.%d"; -static char __pyx_k_Custom_exception_raised_when_SfN[] = "Custom exception raised when ``SfNoMca()`` returns ``-1``\n "; -static char __pyx_k_Failed_to_retrieve_number_of_MCA[] = "Failed to retrieve number of MCA "; -static char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd"; -static char __pyx_k_MCA_calibration_line_CALIB_not_f[] = "MCA calibration line (@CALIB) not found"; -static char __pyx_k_MCA_index_should_be_an_integer_s[] = "MCA index should be an integer (%s provided)"; -static char __pyx_k_No_MCA_spectrum_found_in_this_sc[] = "No MCA spectrum found in this scan"; -static char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported"; -static char __pyx_k_Parameter_value_must_be_a_string[] = "Parameter value must be a string."; -static char __pyx_k_Unable_to_parse_file_header_line[] = "Unable to parse file header line "; -static char __pyx_k_Unable_to_parse_scan_header_line[] = "Unable to parse scan header line "; -static char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous"; -static char __pyx_k_the_unique_scan_index_or_a_strin[] = "the unique scan index or a string 'N.M' with N being the scan"; -static char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short."; +static PyObject *__pyx_builtin_Ellipsis; +static PyObject *__pyx_builtin_id; +static const char __pyx_k_[] = "\n"; +static const char __pyx_k_2[] = " {2,}"; +static const char __pyx_k_F[] = "#F "; +static const char __pyx_k_L[] = "L"; +static const char __pyx_k_O[] = "O"; +static const char __pyx_k_S[] = "#S "; +static const char __pyx_k_c[] = "c"; +static const char __pyx_k_d[] = "d"; +static const char __pyx_k_f[] = "f"; +static const char __pyx_k_i[] = "i"; +static const char __pyx_k_w[] = "#(\\w+) *(.*)"; +static const char __pyx_k__8[] = "#"; +static const char __pyx_k_id[] = "id"; +static const char __pyx_k_os[] = "os"; +static const char __pyx_k_rb[] = "rb"; +static const char __pyx_k_re[] = "re"; +static const char __pyx_k_MCA[] = "MCA"; +static const char __pyx_k_MIT[] = "MIT"; +static const char __pyx_k__15[] = " "; +static const char __pyx_k__28[] = "."; +static const char __pyx_k__30[] = "', '"; +static const char __pyx_k__31[] = "'"; +static const char __pyx_k_doc[] = "__doc__"; +static const char __pyx_k_key[] = "key"; +static const char __pyx_k_len[] = "__len__"; +static const char __pyx_k_map[] = "map"; +static const char __pyx_k_mca[] = "_mca"; +static const char __pyx_k_msg[] = "msg"; +static const char __pyx_k_new[] = "__new__"; +static const char __pyx_k_obj[] = "obj"; +static const char __pyx_k_ret[] = "ret"; +static const char __pyx_k_sub[] = "sub"; +static const char __pyx_k_sys[] = "sys"; +static const char __pyx_k_w_2[] = "#@(\\w+) *(.*)"; +static const char __pyx_k_Scan[] = "Scan"; +static const char __pyx_k_args[] = "args"; +static const char __pyx_k_base[] = "base"; +static const char __pyx_k_data[] = "_data"; +static const char __pyx_k_date[] = "__date__"; +static const char __pyx_k_dict[] = "__dict__"; +static const char __pyx_k_exit[] = "__exit__"; +static const char __pyx_k_hkey[] = "hkey"; +static const char __pyx_k_init[] = "__init__"; +static const char __pyx_k_iter[] = "__iter__"; +static const char __pyx_k_join[] = "join"; +static const char __pyx_k_keys[] = "keys"; +static const char __pyx_k_line[] = "line"; +static const char __pyx_k_list[] = "_list"; +static const char __pyx_k_main[] = "__main__"; +static const char __pyx_k_mode[] = "mode"; +static const char __pyx_k_name[] = "name"; +static const char __pyx_k_ndim[] = "ndim"; +static const char __pyx_k_open[] = "open"; +static const char __pyx_k_pack[] = "pack"; +static const char __pyx_k_path[] = "path"; +static const char __pyx_k_read[] = "read"; +static const char __pyx_k_scan[] = "scan"; +static const char __pyx_k_self[] = "self"; +static const char __pyx_k_send[] = "send"; +static const char __pyx_k_size[] = "size"; +static const char __pyx_k_step[] = "step"; +static const char __pyx_k_stop[] = "stop"; +static const char __pyx_k_test[] = "__test__"; +static const char __pyx_k_ASCII[] = "ASCII"; +static const char __pyx_k_CALIB[] = "CALIB"; +static const char __pyx_k_CHANN[] = "CHANN"; +static const char __pyx_k_ascii[] = "ascii"; +static const char __pyx_k_chunk[] = "chunk"; +static const char __pyx_k_class[] = "__class__"; +static const char __pyx_k_close[] = "close"; +static const char __pyx_k_dtype[] = "dtype"; +static const char __pyx_k_empty[] = "empty"; +static const char __pyx_k_enter[] = "__enter__"; +static const char __pyx_k_error[] = "error"; +static const char __pyx_k_flags[] = "flags"; +static const char __pyx_k_group[] = "group"; +static const char __pyx_k_index[] = "index"; +static const char __pyx_k_label[] = "label"; +static const char __pyx_k_match[] = "match"; +static const char __pyx_k_mca_2[] = "mca"; +static const char __pyx_k_numpy[] = "numpy"; +static const char __pyx_k_order[] = "order"; +static const char __pyx_k_range[] = "range"; +static const char __pyx_k_shape[] = "shape"; +static const char __pyx_k_split[] = "split"; +static const char __pyx_k_start[] = "start"; +static const char __pyx_k_strip[] = "strip"; +static const char __pyx_k_throw[] = "throw"; +static const char __pyx_k_value[] = "value"; +static const char __pyx_k_ERRORS[] = "ERRORS"; +static const char __pyx_k_append[] = "append"; +static const char __pyx_k_data_2[] = "data"; +static const char __pyx_k_decode[] = "decode"; +static const char __pyx_k_double[] = "double"; +static const char __pyx_k_encode[] = "encode"; +static const char __pyx_k_format[] = "format"; +static const char __pyx_k_header[] = "_header"; +static const char __pyx_k_hvalue[] = "hvalue"; +static const char __pyx_k_import[] = "__import__"; +static const char __pyx_k_isfile[] = "isfile"; +static const char __pyx_k_labels[] = "_labels"; +static const char __pyx_k_length[] = "length"; +static const char __pyx_k_logger[] = "_logger"; +static const char __pyx_k_lstrip[] = "lstrip"; +static const char __pyx_k_module[] = "__module__"; +static const char __pyx_k_name_2[] = "__name__"; +static const char __pyx_k_number[] = "number"; +static const char __pyx_k_object[] = "object"; +static const char __pyx_k_pickle[] = "pickle"; +static const char __pyx_k_record[] = "record"; +static const char __pyx_k_reduce[] = "__reduce__"; +static const char __pyx_k_scan_2[] = "_scan"; +static const char __pyx_k_search[] = "search"; +static const char __pyx_k_string[] = "string_"; +static const char __pyx_k_struct[] = "struct"; +static const char __pyx_k_unpack[] = "unpack"; +static const char __pyx_k_update[] = "update"; +static const char __pyx_k_IOError[] = "IOError"; +static const char __pyx_k_SfError[] = "SfError"; +static const char __pyx_k_asarray[] = "asarray"; +static const char __pyx_k_authors[] = "__authors__"; +static const char __pyx_k_fortran[] = "fortran"; +static const char __pyx_k_get_mca[] = "get_mca"; +static const char __pyx_k_getitem[] = "__getitem__"; +static const char __pyx_k_index_2[] = "_index"; +static const char __pyx_k_license[] = "__license__"; +static const char __pyx_k_logging[] = "logging"; +static const char __pyx_k_memview[] = "memview"; +static const char __pyx_k_order_2[] = "_order"; +static const char __pyx_k_os_path[] = "os.path"; +static const char __pyx_k_prepare[] = "__prepare__"; +static const char __pyx_k_warning[] = "warning"; +static const char __pyx_k_Ellipsis[] = "Ellipsis"; +static const char __pyx_k_KeyError[] = "KeyError"; +static const char __pyx_k_L_header[] = "L_header"; +static const char __pyx_k_P_Knobel[] = "P. Knobel"; +static const char __pyx_k_Scan_mca[] = "Scan.mca"; +static const char __pyx_k_channels[] = "channels"; +static const char __pyx_k_filename[] = "filename"; +static const char __pyx_k_getstate[] = "__getstate__"; +static const char __pyx_k_header_2[] = "header"; +static const char __pyx_k_itemsize[] = "itemsize"; +static const char __pyx_k_labels_2[] = "labels"; +static const char __pyx_k_number_2[] = "_number"; +static const char __pyx_k_property[] = "property"; +static const char __pyx_k_pyx_type[] = "__pyx_type"; +static const char __pyx_k_qualname[] = "__qualname__"; +static const char __pyx_k_setstate[] = "__setstate__"; +static const char __pyx_k_specfile[] = "_specfile"; +static const char __pyx_k_MCA___len[] = "MCA.__len__"; +static const char __pyx_k_Scan_data[] = "Scan.data"; +static const char __pyx_k_TypeError[] = "TypeError"; +static const char __pyx_k_data_line[] = "data_line"; +static const char __pyx_k_enumerate[] = "enumerate"; +static const char __pyx_k_getLogger[] = "getLogger"; +static const char __pyx_k_increment[] = "increment"; +static const char __pyx_k_match_mca[] = "match_mca"; +static const char __pyx_k_mca_index[] = "mca_index"; +static const char __pyx_k_metaclass[] = "__metaclass__"; +static const char __pyx_k_pyx_state[] = "__pyx_state"; +static const char __pyx_k_reduce_ex[] = "__reduce_ex__"; +static const char __pyx_k_transpose[] = "transpose"; +static const char __pyx_k_11_08_2017[] = "11/08/2017"; +static const char __pyx_k_IndexError[] = "IndexError"; +static const char __pyx_k_MCA___init[] = "MCA.__init__"; +static const char __pyx_k_MCA___iter[] = "MCA.__iter__"; +static const char __pyx_k_Scan_index[] = "Scan.index"; +static const char __pyx_k_Scan_order[] = "Scan.order"; +static const char __pyx_k_Valid_keys[] = "\nValid keys: '"; +static const char __pyx_k_ValueError[] = "ValueError"; +static const char __pyx_k_calib_line[] = "calib_line"; +static const char __pyx_k_chann_line[] = "chann_line"; +static const char __pyx_k_dictionary[] = "dictionary"; +static const char __pyx_k_line_index[] = "line_index"; +static const char __pyx_k_pyx_result[] = "__pyx_result"; +static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; +static const char __pyx_k_scan_index[] = "scan_index"; +static const char __pyx_k_scan_order[] = "scan_order"; +static const char __pyx_k_specfile_2[] = "specfile"; +static const char __pyx_k_startswith[] = "startswith"; +static const char __pyx_k_MemoryError[] = "MemoryError"; +static const char __pyx_k_PickleError[] = "PickleError"; +static const char __pyx_k_Scan___init[] = "Scan.__init__"; +static const char __pyx_k_Scan_header[] = "Scan.header"; +static const char __pyx_k_Scan_labels[] = "Scan.labels"; +static const char __pyx_k_Scan_number[] = "Scan.number"; +static const char __pyx_k_calib_lines[] = "calib_lines"; +static const char __pyx_k_calibration[] = "calibration"; +static const char __pyx_k_chann_lines[] = "chann_lines"; +static const char __pyx_k_file_header[] = "file_header"; +static const char __pyx_k_is_specfile[] = "is_specfile"; +static const char __pyx_k_motor_names[] = "motor_names"; +static const char __pyx_k_scan_header[] = "scan_header"; +static const char __pyx_k_scan_number[] = "scan_number"; +static const char __pyx_k_SfNoMcaError[] = "SfNoMcaError"; +static const char __pyx_k_handle_error[] = "_handle_error"; +static const char __pyx_k_pyx_checksum[] = "__pyx_checksum"; +static const char __pyx_k_stringsource[] = "stringsource"; +static const char __pyx_k_version_info[] = "version_info"; +static const char __pyx_k_MCA___getitem[] = "MCA.__getitem__"; +static const char __pyx_k_SfErrFileOpen[] = "SfErrFileOpen"; +static const char __pyx_k_SfErrFileRead[] = "SfErrFileRead"; +static const char __pyx_k_motor_names_2[] = "_motor_names"; +static const char __pyx_k_number_of_mca[] = "number_of_mca"; +static const char __pyx_k_pyx_getbuffer[] = "__pyx_getbuffer"; +static const char __pyx_k_reduce_cython[] = "__reduce_cython__"; +static const char __pyx_k_AttributeError[] = "AttributeError"; +static const char __pyx_k_Scan_data_line[] = "Scan.data_line"; +static const char __pyx_k_SfErrFileClose[] = "SfErrFileClose"; +static const char __pyx_k_SfErrFileWrite[] = "SfErrFileWrite"; +static const char __pyx_k_SfErrLineEmpty[] = "SfErrLineEmpty"; +static const char __pyx_k_parse_channels[] = "_parse_channels"; +static const char __pyx_k_SpecFile___iter[] = "SpecFile.__iter__"; +static const char __pyx_k_View_MemoryView[] = "View.MemoryView"; +static const char __pyx_k_allocate_buffer[] = "allocate_buffer"; +static const char __pyx_k_dtype_is_object[] = "dtype_is_object"; +static const char __pyx_k_mca_header_dict[] = "mca_header_dict"; +static const char __pyx_k_motor_positions[] = "motor_positions"; +static const char __pyx_k_pyx_PickleError[] = "__pyx_PickleError"; +static const char __pyx_k_setstate_cython[] = "__setstate_cython__"; +static const char __pyx_k_SF_ERR_FILE_OPEN[] = "SF_ERR_FILE_OPEN"; +static const char __pyx_k_SF_ERR_NO_ERRORS[] = "SF_ERR_NO_ERRORS"; +static const char __pyx_k_Scan_file_header[] = "Scan.file_header"; +static const char __pyx_k_Scan_motor_names[] = "Scan.motor_names"; +static const char __pyx_k_Scan_scan_header[] = "Scan.scan_header"; +static const char __pyx_k_SfErrColNotFound[] = "SfErrColNotFound"; +static const char __pyx_k_SfErrMcaNotFound[] = "SfErrMcaNotFound"; +static const char __pyx_k_SfErrMemoryAlloc[] = "SfErrMemoryAlloc"; +static const char __pyx_k_all_calib_values[] = "all_calib_values"; +static const char __pyx_k_all_chann_values[] = "all_chann_values"; +static const char __pyx_k_file_header_dict[] = "_file_header_dict"; +static const char __pyx_k_get_error_string[] = "_get_error_string"; +static const char __pyx_k_scan_header_dict[] = "_scan_header_dict"; +static const char __pyx_k_silx_io_specfile[] = "silx.io.specfile"; +static const char __pyx_k_SfErrLineNotFound[] = "SfErrLineNotFound"; +static const char __pyx_k_SfErrScanNotFound[] = "SfErrScanNotFound"; +static const char __pyx_k_SfErrUserNotFound[] = "SfErrUserNotFound"; +static const char __pyx_k_file_header_lines[] = "_file_header_lines"; +static const char __pyx_k_mca_header_dict_2[] = "_mca_header_dict"; +static const char __pyx_k_motor_positions_2[] = "_motor_positions"; +static const char __pyx_k_parse_calibration[] = "_parse_calibration"; +static const char __pyx_k_pyx_unpickle_Enum[] = "__pyx_unpickle_Enum"; +static const char __pyx_k_scan_header_lines[] = "_scan_header_lines"; +static const char __pyx_k_SfErrLabelNotFound[] = "SfErrLabelNotFound"; +static const char __pyx_k_SfErrMotorNotFound[] = "SfErrMotorNotFound"; +static const char __pyx_k_SfNoMca_returned_1[] = "(SfNoMca returned -1)"; +static const char __pyx_k_add_or_concatenate[] = "_add_or_concatenate"; +static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback"; +static const char __pyx_k_file_header_dict_2[] = "file_header_dict"; +static const char __pyx_k_scan_header_dict_2[] = "scan_header_dict"; +static const char __pyx_k_strided_and_direct[] = "<strided and direct>"; +static const char __pyx_k_MCA__parse_channels[] = "MCA._parse_channels"; +static const char __pyx_k_SfErrHeaderNotFound[] = "SfErrHeaderNotFound"; +static const char __pyx_k_data_column_by_name[] = "data_column_by_name"; +static const char __pyx_k_string_to_char_star[] = "_string_to_char_star"; +static const char __pyx_k_Scan_mca_header_dict[] = "Scan.mca_header_dict"; +static const char __pyx_k_Scan_motor_positions[] = "Scan.motor_positions"; +static const char __pyx_k_record_exists_in_hdr[] = "record_exists_in_hdr"; +static const char __pyx_k_silx_io_specfile_pyx[] = "silx/io/specfile.pyx"; +static const char __pyx_k_strided_and_indirect[] = "<strided and indirect>"; +static const char __pyx_k_SF_ERR_SCAN_NOT_FOUND[] = "SF_ERR_SCAN_NOT_FOUND"; +static const char __pyx_k_Scan_file_header_dict[] = "Scan.file_header_dict"; +static const char __pyx_k_Scan_scan_header_dict[] = "Scan.scan_header_dict"; +static const char __pyx_k_SfErrPositionNotFound[] = "SfErrPositionNotFound"; +static const char __pyx_k_contiguous_and_direct[] = "<contiguous and direct>"; +static const char __pyx_k_one_line_calib_values[] = "one_line_calib_values"; +static const char __pyx_k_one_line_chann_values[] = "one_line_chann_values"; +static const char __pyx_k_MCA__parse_calibration[] = "MCA._parse_calibration"; +static const char __pyx_k_MemoryView_of_r_object[] = "<MemoryView of %r object>"; +static const char __pyx_k_motor_position_by_name[] = "motor_position_by_name"; +static const char __pyx_k_MemoryView_of_r_at_0x_x[] = "<MemoryView of %r at 0x%x>"; +static const char __pyx_k_contiguous_and_indirect[] = "<contiguous and indirect>"; +static const char __pyx_k_Cannot_index_with_type_s[] = "Cannot index with type '%s'"; +static const char __pyx_k_Scan_data_column_by_name[] = "Scan.data_column_by_name"; +static const char __pyx_k_Invalid_shape_in_axis_d_d[] = "Invalid shape in axis %d: %d."; +static const char __pyx_k_Scan_record_exists_in_hdr[] = "Scan.record_exists_in_hdr"; +static const char __pyx_k_Scan_motor_position_by_name[] = "Scan.motor_position_by_name"; +static const char __pyx_k_itemsize_0_for_cython_array[] = "itemsize <= 0 for cython.array"; +static const char __pyx_k_Error_while_closing_SpecFile[] = "Error while closing SpecFile"; +static const char __pyx_k_number_and_M_the_order_eg_2_3[] = " number and M the order (eg '2.3')."; +static const char __pyx_k_unable_to_allocate_array_data[] = "unable to allocate array data."; +static const char __pyx_k_MCA_index_must_be_in_range_0_d[] = "MCA index must be in range 0-%d"; +static const char __pyx_k_param_specfile_Parent_SpecFile[] = "\n\n :param specfile: Parent SpecFile from which this scan is extracted.\n :type specfile: :class:`SpecFile`\n :param scan_index: Unique index defining the scan in the SpecFile\n :type scan_index: int\n\n Interface to access a SpecFile scan\n\n A scan is a block of descriptive header lines followed by a 2D data array.\n\n Following three ways of accessing a scan are equivalent::\n\n sf = SpecFile(\"/path/to/specfile.dat\")\n\n # Explicit class instantiation\n scan2 = Scan(sf, scan_index=2)\n\n # 0-based index on a SpecFile object\n scan2 = sf[2]\n\n # Using a \"n.m\" key (scan number starting with 1, scan order)\n scan2 = sf[\"3.1\"]\n "; +static const char __pyx_k_strided_and_direct_or_indirect[] = "<strided and direct or indirect>"; +static const char __pyx_k_Base_exception_inherited_by_all[] = "Base exception inherited by all exceptions raised when a\n C function from the legacy SpecFile library returns an error\n code.\n "; +static const char __pyx_k_Scan_index_must_be_in_range_0_d[] = "Scan index must be in range 0-%d"; +static const char __pyx_k_The_scan_identification_key_can[] = "The scan identification key can be an integer representing "; +static const char __pyx_k_This_module_is_a_cython_binding[] = "\nThis module is a cython binding to wrap the C SpecFile library, to access\nSpecFile data within a python program.\n\nDocumentation for the original C library SpecFile can be found on the ESRF\nwebsite:\n`The manual for the SpecFile Library <http://www.esrf.eu/files/live/sites/www/files/Instrumentation/software/beamline-control/BLISS/documentation/SpecFileManual.pdf>`_\n\nExamples\n========\n\nStart by importing :class:`SpecFile` and instantiate it:\n\n.. code-block:: python\n\n from silx.io.specfile import SpecFile\n\n sf = SpecFile(\"test.dat\")\n\nA :class:`SpecFile` instance can be accessed like a dictionary to obtain a\n:class:`Scan` instance.\n\nIf the key is a string representing two values\nseparated by a dot (e.g. ``\"1.2\"``), they will be treated as the scan number\n(``#S`` header line) and the scan order::\n\n # get second occurrence of scan \"#S 1\"\n myscan = sf[\"1.2\"]\n\n # access scan data as a numpy array\n nlines, ncolumns = myscan.data.shape\n\nIf the key is an integer, it will be treated as a 0-based index::\n\n first_scan = sf[0]\n second_scan = sf[1]\n\nIt is also possible to browse through all scans using :class:`SpecFile` as\nan iterator::\n\n for scan in sf:\n print(scan.scan_header_dict['S'])\n\nMCA spectra can be selectively loaded using an instance of :class:`MCA`\nprovided by :class:`Scan`::\n\n # Only one MCA spectrum is loaded in memory\n second_mca = first_scan.mca[1]\n\n # Iterating trough all MCA spectra in a scan:\n for mca_data in first_scan.mca:\n print(sum(mca_data))\n\nClasses\n=======\n\n- :class:`SpecFile`\n- :class:`Scan`\n- :class:`MCA`\n\nExceptions\n==========\n\n- :class:`SfError`\n- :class:`SfErrMemoryAlloc`\n- :class:`SfErrFileOpen`\n- :class:`SfErrFileClose`\n- :class:`SfErrFileRead`\n- :class:`SfErrFileWrite`\n- :class:`SfErrLineNotFound`\n- :class:`SfErrScanNotFound`\n- :class:`SfErrHeaderNotFound`\n- :class:`SfErrLabelNotFound`\n- :class:`SfErrMotorNotFound`""\n- :class:`SfErrPositionNotFound`\n- :class:`SfErrLineEmpty`\n- :class:`SfErrUserNotFound`\n- :class:`SfErrColNotFound`\n- :class:`SfErrMcaNotFound`\n\n"; +static const char __pyx_k_param_scan_Parent_Scan_instance[] = "\n\n :param scan: Parent Scan instance\n :type scan: :class:`Scan`\n\n :var calibration: MCA calibration :math:`(a, b, c)` (as in\n :math:`a + b x + c x\302\262`) from ``#@CALIB`` scan header.\n :type calibration: list of 3 floats, default ``[0., 1., 0.]``\n :var channels: MCA channels list from ``#@CHANN`` scan header.\n In the absence of a ``#@CHANN`` header, this attribute is a list\n ``[0, \342\200\246, N-1]`` where ``N`` is the length of the first spectrum.\n In the absence of MCA spectra, this attribute defaults to ``None``.\n :type channels: list of int\n\n This class provides access to Multi-Channel Analysis data. A :class:`MCA`\n instance can be indexed to access 1D numpy arrays representing single\n MCA\302\240spectra.\n\n To create a :class:`MCA` instance, you must provide a parent :class:`Scan`\n instance, which in turn will provide a reference to the original\n :class:`SpecFile` instance::\n\n sf = SpecFile(\"/path/to/specfile.dat\")\n scan2 = Scan(sf, scan_index=2)\n mcas_in_scan2 = MCA(scan2)\n for i in len(mcas_in_scan2):\n mca_data = mcas_in_scan2[i]\n ... # do some something with mca_data (1D numpy array)\n\n A more pythonic way to do the same work, without having to explicitly\n instantiate ``scan`` and ``mcas_in_scan``, would be::\n\n sf = SpecFile(\"specfilename.dat\")\n # scan2 from previous example can be referred to as sf[2]\n # mcas_in_scan2 from previous example can be referred to as scan2.mca\n for mca_data in sf[2].mca:\n ... # do some something with mca_data (1D numpy array)\n\n "; +static const char __pyx_k_Buffer_view_does_not_expose_stri[] = "Buffer view does not expose strides"; +static const char __pyx_k_Can_only_create_a_buffer_that_is[] = "Can only create a buffer that is contiguous in memory."; +static const char __pyx_k_Cannot_assign_to_read_only_memor[] = "Cannot assign to read-only memoryview"; +static const char __pyx_k_Cannot_create_writable_memory_vi[] = "Cannot create writable memory view from read-only memoryview"; +static const char __pyx_k_Cannot_get_data_column_s_in_scan[] = "Cannot get data column %s in scan %d.%d"; +static const char __pyx_k_Custom_exception_raised_when_SfN[] = "Custom exception raised when ``SfNoMca()`` returns ``-1``\n "; +static const char __pyx_k_Empty_shape_tuple_for_cython_arr[] = "Empty shape tuple for cython.array"; +static const char __pyx_k_Failed_to_retrieve_number_of_MCA[] = "Failed to retrieve number of MCA "; +static const char __pyx_k_Incompatible_checksums_s_vs_0xb0[] = "Incompatible checksums (%s vs 0xb068931 = (name))"; +static const char __pyx_k_Indirect_dimensions_not_supporte[] = "Indirect dimensions not supported"; +static const char __pyx_k_Invalid_mode_expected_c_or_fortr[] = "Invalid mode, expected 'c' or 'fortran', got %s"; +static const char __pyx_k_MCA_calibration_line_CALIB_not_f[] = "MCA calibration line (@CALIB) not found"; +static const char __pyx_k_MCA_index_should_be_an_integer_s[] = "MCA index should be an integer (%s provided)"; +static const char __pyx_k_No_MCA_spectrum_found_in_this_sc[] = "No MCA spectrum found in this scan"; +static const char __pyx_k_Out_of_bounds_on_buffer_access_a[] = "Out of bounds on buffer access (axis %d)"; +static const char __pyx_k_Parameter_value_must_be_a_string[] = "Parameter value must be a string."; +static const char __pyx_k_SfDataColByName_returned_1_witho[] = "SfDataColByName returned -1 without an error. Assuming aborted scan."; +static const char __pyx_k_SfData_returned_1_without_an_err[] = "SfData returned -1 without an error. Assuming aborted scan."; +static const char __pyx_k_Unable_to_convert_item_to_object[] = "Unable to convert item to object"; +static const char __pyx_k_Unable_to_parse_file_header_line[] = "Unable to parse file header line "; +static const char __pyx_k_Unable_to_parse_scan_header_line[] = "Unable to parse scan header line "; +static const char __pyx_k_got_differing_extents_in_dimensi[] = "got differing extents in dimension %d (got %d and %d)"; +static const char __pyx_k_no_default___reduce___due_to_non[] = "no default __reduce__ due to non-trivial __cinit__"; +static const char __pyx_k_the_unique_scan_index_or_a_strin[] = "the unique scan index or a string 'N.M' with N being the scan"; +static const char __pyx_k_unable_to_allocate_shape_and_str[] = "unable to allocate shape and strides."; static PyObject *__pyx_kp_b_; static PyObject *__pyx_kp_s_; static PyObject *__pyx_kp_s_11_08_2017; static PyObject *__pyx_kp_s_2; -static PyObject *__pyx_kp_s_3; +static PyObject *__pyx_n_s_ASCII; static PyObject *__pyx_n_s_AttributeError; static PyObject *__pyx_kp_s_Base_exception_inherited_by_all; +static PyObject *__pyx_kp_s_Buffer_view_does_not_expose_stri; static PyObject *__pyx_n_s_CALIB; static PyObject *__pyx_n_s_CHANN; +static PyObject *__pyx_kp_s_Can_only_create_a_buffer_that_is; +static PyObject *__pyx_kp_s_Cannot_assign_to_read_only_memor; +static PyObject *__pyx_kp_s_Cannot_create_writable_memory_vi; static PyObject *__pyx_kp_s_Cannot_get_data_column_s_in_scan; +static PyObject *__pyx_kp_s_Cannot_index_with_type_s; static PyObject *__pyx_kp_s_Custom_exception_raised_when_SfN; static PyObject *__pyx_n_s_ERRORS; +static PyObject *__pyx_n_s_Ellipsis; +static PyObject *__pyx_kp_s_Empty_shape_tuple_for_cython_arr; static PyObject *__pyx_kp_s_Error_while_closing_SpecFile; -static PyObject *__pyx_n_s_Exception; static PyObject *__pyx_kp_b_F; static PyObject *__pyx_kp_s_Failed_to_retrieve_number_of_MCA; -static PyObject *__pyx_kp_u_Format_string_allocated_too_shor; -static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2; static PyObject *__pyx_n_s_IOError; +static PyObject *__pyx_kp_s_Incompatible_checksums_s_vs_0xb0; static PyObject *__pyx_n_s_IndexError; +static PyObject *__pyx_kp_s_Indirect_dimensions_not_supporte; +static PyObject *__pyx_kp_s_Invalid_mode_expected_c_or_fortr; +static PyObject *__pyx_kp_s_Invalid_shape_in_axis_d_d; static PyObject *__pyx_n_s_KeyError; static PyObject *__pyx_n_s_L; static PyObject *__pyx_n_s_L_header; @@ -1717,11 +2385,14 @@ static PyObject *__pyx_kp_s_MCA_index_must_be_in_range_0_d; static PyObject *__pyx_kp_s_MCA_index_should_be_an_integer_s; static PyObject *__pyx_n_s_MIT; static PyObject *__pyx_n_s_MemoryError; +static PyObject *__pyx_kp_s_MemoryView_of_r_at_0x_x; +static PyObject *__pyx_kp_s_MemoryView_of_r_object; static PyObject *__pyx_kp_s_No_MCA_spectrum_found_in_this_sc; -static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor; +static PyObject *__pyx_n_b_O; +static PyObject *__pyx_kp_s_Out_of_bounds_on_buffer_access_a; static PyObject *__pyx_kp_s_P_Knobel; static PyObject *__pyx_kp_s_Parameter_value_must_be_a_string; -static PyObject *__pyx_n_s_RuntimeError; +static PyObject *__pyx_n_s_PickleError; static PyObject *__pyx_kp_b_S; static PyObject *__pyx_n_s_SF_ERR_FILE_OPEN; static PyObject *__pyx_n_s_SF_ERR_NO_ERRORS; @@ -1747,6 +2418,8 @@ static PyObject *__pyx_n_s_Scan_order; static PyObject *__pyx_n_s_Scan_record_exists_in_hdr; static PyObject *__pyx_n_s_Scan_scan_header; static PyObject *__pyx_n_s_Scan_scan_header_dict; +static PyObject *__pyx_kp_s_SfDataColByName_returned_1_witho; +static PyObject *__pyx_kp_s_SfData_returned_1_without_an_err; static PyObject *__pyx_n_s_SfErrColNotFound; static PyObject *__pyx_n_s_SfErrFileClose; static PyObject *__pyx_n_s_SfErrFileOpen; @@ -1768,22 +2441,30 @@ static PyObject *__pyx_kp_s_SfNoMca_returned_1; static PyObject *__pyx_n_s_SpecFile___iter; static PyObject *__pyx_kp_s_The_scan_identification_key_can; static PyObject *__pyx_n_s_TypeError; +static PyObject *__pyx_kp_s_Unable_to_convert_item_to_object; static PyObject *__pyx_kp_s_Unable_to_parse_file_header_line; static PyObject *__pyx_kp_s_Unable_to_parse_scan_header_line; static PyObject *__pyx_kp_s_Valid_keys; static PyObject *__pyx_n_s_ValueError; -static PyObject *__pyx_kp_s__14; +static PyObject *__pyx_n_s_View_MemoryView; +static PyObject *__pyx_kp_s__15; static PyObject *__pyx_kp_s__28; +static PyObject *__pyx_kp_u__28; static PyObject *__pyx_kp_s__30; static PyObject *__pyx_kp_s__31; -static PyObject *__pyx_kp_s__7; +static PyObject *__pyx_kp_s__8; static PyObject *__pyx_n_s_add_or_concatenate; static PyObject *__pyx_n_s_all_calib_values; static PyObject *__pyx_n_s_all_chann_values; +static PyObject *__pyx_n_s_allocate_buffer; static PyObject *__pyx_n_s_append; static PyObject *__pyx_n_s_args; +static PyObject *__pyx_n_s_asarray; static PyObject *__pyx_n_s_ascii; static PyObject *__pyx_n_s_authors; +static PyObject *__pyx_n_s_base; +static PyObject *__pyx_n_s_c; +static PyObject *__pyx_n_u_c; static PyObject *__pyx_n_s_calib_line; static PyObject *__pyx_n_s_calib_lines; static PyObject *__pyx_n_s_calibration; @@ -1791,22 +2472,29 @@ static PyObject *__pyx_n_s_chann_line; static PyObject *__pyx_n_s_chann_lines; static PyObject *__pyx_n_s_channels; static PyObject *__pyx_n_s_chunk; +static PyObject *__pyx_n_s_class; +static PyObject *__pyx_n_s_cline_in_traceback; static PyObject *__pyx_n_s_close; -static PyObject *__pyx_kp_u_d_d; +static PyObject *__pyx_kp_s_contiguous_and_direct; +static PyObject *__pyx_kp_s_contiguous_and_indirect; +static PyObject *__pyx_n_u_d; static PyObject *__pyx_n_s_data; static PyObject *__pyx_n_s_data_2; static PyObject *__pyx_n_s_data_column_by_name; static PyObject *__pyx_n_s_data_line; static PyObject *__pyx_n_s_date; static PyObject *__pyx_n_s_decode; +static PyObject *__pyx_n_s_dict; static PyObject *__pyx_n_s_dictionary; static PyObject *__pyx_n_s_doc; static PyObject *__pyx_n_s_double; static PyObject *__pyx_n_s_dtype; +static PyObject *__pyx_n_s_dtype_is_object; static PyObject *__pyx_n_s_empty; static PyObject *__pyx_n_s_encode; static PyObject *__pyx_n_s_enter; static PyObject *__pyx_n_s_enumerate; +static PyObject *__pyx_n_s_error; static PyObject *__pyx_n_s_exit; static PyObject *__pyx_n_s_f; static PyObject *__pyx_n_s_file_header; @@ -1814,10 +2502,16 @@ static PyObject *__pyx_n_s_file_header_dict; static PyObject *__pyx_n_s_file_header_dict_2; static PyObject *__pyx_n_s_file_header_lines; static PyObject *__pyx_n_s_filename; +static PyObject *__pyx_n_s_flags; +static PyObject *__pyx_n_s_format; +static PyObject *__pyx_n_s_fortran; +static PyObject *__pyx_n_u_fortran; static PyObject *__pyx_n_s_getLogger; static PyObject *__pyx_n_s_get_error_string; static PyObject *__pyx_n_s_get_mca; static PyObject *__pyx_n_s_getitem; +static PyObject *__pyx_n_s_getstate; +static PyObject *__pyx_kp_s_got_differing_extents_in_dimensi; static PyObject *__pyx_n_s_group; static PyObject *__pyx_n_s_handle_error; static PyObject *__pyx_n_s_header; @@ -1825,6 +2519,7 @@ static PyObject *__pyx_n_s_header_2; static PyObject *__pyx_n_s_hkey; static PyObject *__pyx_n_s_hvalue; static PyObject *__pyx_n_s_i; +static PyObject *__pyx_n_s_id; static PyObject *__pyx_n_s_import; static PyObject *__pyx_n_s_increment; static PyObject *__pyx_n_s_index; @@ -1832,6 +2527,8 @@ static PyObject *__pyx_n_s_index_2; static PyObject *__pyx_n_s_init; static PyObject *__pyx_n_s_is_specfile; static PyObject *__pyx_n_s_isfile; +static PyObject *__pyx_n_s_itemsize; +static PyObject *__pyx_kp_s_itemsize_0_for_cython_array; static PyObject *__pyx_n_s_iter; static PyObject *__pyx_n_s_join; static PyObject *__pyx_n_s_key; @@ -1857,7 +2554,9 @@ static PyObject *__pyx_n_s_mca_2; static PyObject *__pyx_n_s_mca_header_dict; static PyObject *__pyx_n_s_mca_header_dict_2; static PyObject *__pyx_n_s_mca_index; +static PyObject *__pyx_n_s_memview; static PyObject *__pyx_n_s_metaclass; +static PyObject *__pyx_n_s_mode; static PyObject *__pyx_n_s_module; static PyObject *__pyx_n_s_motor_names; static PyObject *__pyx_n_s_motor_names_2; @@ -1867,13 +2566,15 @@ static PyObject *__pyx_n_s_motor_positions_2; static PyObject *__pyx_n_s_msg; static PyObject *__pyx_n_s_name; static PyObject *__pyx_n_s_name_2; -static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous; -static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou; +static PyObject *__pyx_n_s_ndim; +static PyObject *__pyx_n_s_new; +static PyObject *__pyx_kp_s_no_default___reduce___due_to_non; static PyObject *__pyx_n_s_number; static PyObject *__pyx_n_s_number_2; static PyObject *__pyx_kp_s_number_and_M_the_order_eg_2_3; static PyObject *__pyx_n_s_number_of_mca; static PyObject *__pyx_n_s_numpy; +static PyObject *__pyx_n_s_obj; static PyObject *__pyx_n_s_object; static PyObject *__pyx_n_s_one_line_calib_values; static PyObject *__pyx_n_s_one_line_chann_values; @@ -1882,13 +2583,23 @@ static PyObject *__pyx_n_s_order; static PyObject *__pyx_n_s_order_2; static PyObject *__pyx_n_s_os; static PyObject *__pyx_n_s_os_path; +static PyObject *__pyx_n_s_pack; static PyObject *__pyx_kp_s_param_scan_Parent_Scan_instance; static PyObject *__pyx_kp_s_param_specfile_Parent_SpecFile; static PyObject *__pyx_n_s_parse_calibration; static PyObject *__pyx_n_s_parse_channels; static PyObject *__pyx_n_s_path; +static PyObject *__pyx_n_s_pickle; static PyObject *__pyx_n_s_prepare; static PyObject *__pyx_n_s_property; +static PyObject *__pyx_n_s_pyx_PickleError; +static PyObject *__pyx_n_s_pyx_checksum; +static PyObject *__pyx_n_s_pyx_getbuffer; +static PyObject *__pyx_n_s_pyx_result; +static PyObject *__pyx_n_s_pyx_state; +static PyObject *__pyx_n_s_pyx_type; +static PyObject *__pyx_n_s_pyx_unpickle_Enum; +static PyObject *__pyx_n_s_pyx_vtable; static PyObject *__pyx_n_s_qualname; static PyObject *__pyx_n_s_range; static PyObject *__pyx_n_s_rb; @@ -1896,6 +2607,9 @@ static PyObject *__pyx_n_s_re; static PyObject *__pyx_n_s_read; static PyObject *__pyx_n_s_record; static PyObject *__pyx_n_s_record_exists_in_hdr; +static PyObject *__pyx_n_s_reduce; +static PyObject *__pyx_n_s_reduce_cython; +static PyObject *__pyx_n_s_reduce_ex; static PyObject *__pyx_n_s_ret; static PyObject *__pyx_n_s_scan; static PyObject *__pyx_n_s_scan_2; @@ -1909,31 +2623,151 @@ static PyObject *__pyx_n_s_scan_order; static PyObject *__pyx_n_s_search; static PyObject *__pyx_n_s_self; static PyObject *__pyx_n_s_send; +static PyObject *__pyx_n_s_setstate; +static PyObject *__pyx_n_s_setstate_cython; static PyObject *__pyx_n_s_shape; static PyObject *__pyx_n_s_silx_io_specfile; +static PyObject *__pyx_kp_s_silx_io_specfile_pyx; +static PyObject *__pyx_n_s_size; static PyObject *__pyx_n_s_specfile; static PyObject *__pyx_n_s_specfile_2; static PyObject *__pyx_n_s_split; static PyObject *__pyx_n_s_start; static PyObject *__pyx_n_s_startswith; +static PyObject *__pyx_n_s_step; static PyObject *__pyx_n_s_stop; +static PyObject *__pyx_kp_s_strided_and_direct; +static PyObject *__pyx_kp_s_strided_and_direct_or_indirect; +static PyObject *__pyx_kp_s_strided_and_indirect; static PyObject *__pyx_n_s_string; static PyObject *__pyx_n_s_string_to_char_star; +static PyObject *__pyx_kp_s_stringsource; static PyObject *__pyx_n_s_strip; +static PyObject *__pyx_n_s_struct; static PyObject *__pyx_n_s_sub; static PyObject *__pyx_n_s_sys; static PyObject *__pyx_n_s_test; static PyObject *__pyx_kp_s_the_unique_scan_index_or_a_strin; static PyObject *__pyx_n_s_throw; static PyObject *__pyx_n_s_transpose; -static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd; -static PyObject *__pyx_kp_s_users_knobel_git_silx_silx_io_s; +static PyObject *__pyx_kp_s_unable_to_allocate_array_data; +static PyObject *__pyx_kp_s_unable_to_allocate_shape_and_str; +static PyObject *__pyx_n_s_unpack; +static PyObject *__pyx_n_s_update; static PyObject *__pyx_n_s_value; -static PyObject *__pyx_n_s_version; static PyObject *__pyx_n_s_version_info; static PyObject *__pyx_kp_s_w; static PyObject *__pyx_kp_s_w_2; static PyObject *__pyx_n_s_warning; +static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_scan); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_2_parse_channels(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_4_parse_calibration(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_6__len__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_8__getitem__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_3MCA_10__iter__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile__add_or_concatenate(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_dictionary, PyObject *__pyx_v_key, PyObject *__pyx_v_value); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_specfile, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_2index(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_4number(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_6order(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_8header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_10scan_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_12file_header(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_14scan_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_16mca_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_18file_header_dict(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_20labels(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_22data(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_24mca(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_26motor_names(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_28motor_positions(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_30record_exists_in_hdr(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_record); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_32data_line(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_line_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_34data_column_by_name(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_label); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4Scan_36motor_position_by_name(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_name); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_2_string_to_char_star(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_string_); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_4is_specfile(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_filename); /* proto */ +static int __pyx_pf_4silx_2io_8specfile_8SpecFile___cinit__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_filename); /* proto */ +static int __pyx_pf_4silx_2io_8specfile_8SpecFile_2__init__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_filename); /* proto */ +static void __pyx_pf_4silx_2io_8specfile_8SpecFile_4__dealloc__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_6close(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ +static Py_ssize_t __pyx_pf_4silx_2io_8specfile_8SpecFile_8__len__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_10__iter__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_13__getitem__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_15keys(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ +static int __pyx_pf_4silx_2io_8specfile_8SpecFile_17__contains__(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_key); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_19_get_error_string(CYTHON_UNUSED struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_error_code); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_21_handle_error(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_error_code); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_23index(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_number, PyObject *__pyx_v_scan_order); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_25number(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_27order(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_29_list(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_31list(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_33data(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_35data_column_by_name(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_label); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_37scan_header(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_39file_header(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_41columns(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_43command(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_45date(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_47labels(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_49motor_names(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_51motor_positions(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_53motor_position_by_name(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_name); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_55number_of_mca(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_57mca_calibration(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_59get_mca(struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, PyObject *__pyx_v_scan_index, PyObject *__pyx_v_mca_index); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_61__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_63__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_4silx_2io_8specfile_SpecFile *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ +static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array___cinit__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_shape, Py_ssize_t __pyx_v_itemsize, PyObject *__pyx_v_format, PyObject *__pyx_v_mode, int __pyx_v_allocate_buffer); /* proto */ +static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_2__getbuffer__(struct __pyx_array_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ +static void __pyx_array___pyx_pf_15View_dot_MemoryView_5array_4__dealloc__(struct __pyx_array_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_5array_7memview___get__(struct __pyx_array_obj *__pyx_v_self); /* proto */ +static Py_ssize_t __pyx_array___pyx_pf_15View_dot_MemoryView_5array_6__len__(struct __pyx_array_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_8__getattr__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_attr); /* proto */ +static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_10__getitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item); /* proto */ +static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_12__setitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value); /* proto */ +static PyObject *__pyx_pf___pyx_array___reduce_cython__(CYTHON_UNUSED struct __pyx_array_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf___pyx_array_2__setstate_cython__(CYTHON_UNUSED struct __pyx_array_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ +static int __pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum___init__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v_name); /* proto */ +static PyObject *__pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum_2__repr__(struct __pyx_MemviewEnum_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf___pyx_MemviewEnum___reduce_cython__(struct __pyx_MemviewEnum_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf___pyx_MemviewEnum_2__setstate_cython__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */ +static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj, int __pyx_v_flags, int __pyx_v_dtype_is_object); /* proto */ +static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__dealloc__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_4__getitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index); /* proto */ +static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_6__setitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto */ +static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbuffer__(struct __pyx_memoryview_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_1T___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4base___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_5shape___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_7strides___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_10suboffsets___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4ndim___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_8itemsize___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_6nbytes___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4size___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static Py_ssize_t __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_10__len__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_12__repr__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_14__str__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_16is_c_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_18is_f_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_20copy(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_22copy_fortran(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf___pyx_memoryview___reduce_cython__(CYTHON_UNUSED struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf___pyx_memoryview_2__setstate_cython__(CYTHON_UNUSED struct __pyx_memoryview_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ +static void __pyx_memoryviewslice___pyx_pf_15View_dot_MemoryView_16_memoryviewslice___dealloc__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_16_memoryviewslice_4base___get__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf___pyx_memoryviewslice___reduce_cython__(CYTHON_UNUSED struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf___pyx_memoryviewslice_2__setstate_cython__(CYTHON_UNUSED struct __pyx_memoryviewslice_obj *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView___pyx_unpickle_Enum(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */ +static PyObject *__pyx_tp_new_4silx_2io_8specfile_SpecFile(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_4silx_2io_8specfile___pyx_scope_struct____iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_4silx_2io_8specfile___pyx_scope_struct_1___iter__(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_array(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_Enum(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_memoryview(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_float_0_; static PyObject *__pyx_float_1_; static PyObject *__pyx_int_0; @@ -1953,24 +2787,27 @@ static PyObject *__pyx_int_13; static PyObject *__pyx_int_14; static PyObject *__pyx_int_15; static PyObject *__pyx_int_2500; +static PyObject *__pyx_int_184977713; static PyObject *__pyx_int_neg_1; static PyObject *__pyx_tuple__2; static PyObject *__pyx_tuple__3; static PyObject *__pyx_tuple__4; -static PyObject *__pyx_tuple__5; static PyObject *__pyx_tuple__6; -static PyObject *__pyx_tuple__8; +static PyObject *__pyx_tuple__7; static PyObject *__pyx_tuple__9; -static PyObject *__pyx_slice__19; +static PyObject *__pyx_slice__20; +static PyObject *__pyx_slice__52; +static PyObject *__pyx_slice__53; +static PyObject *__pyx_slice__54; static PyObject *__pyx_tuple__10; static PyObject *__pyx_tuple__11; static PyObject *__pyx_tuple__12; static PyObject *__pyx_tuple__13; -static PyObject *__pyx_tuple__15; +static PyObject *__pyx_tuple__14; static PyObject *__pyx_tuple__16; static PyObject *__pyx_tuple__17; static PyObject *__pyx_tuple__18; -static PyObject *__pyx_tuple__20; +static PyObject *__pyx_tuple__19; static PyObject *__pyx_tuple__21; static PyObject *__pyx_tuple__22; static PyObject *__pyx_tuple__23; @@ -1979,6 +2816,7 @@ static PyObject *__pyx_tuple__25; static PyObject *__pyx_tuple__26; static PyObject *__pyx_tuple__27; static PyObject *__pyx_tuple__29; +static PyObject *__pyx_tuple__32; static PyObject *__pyx_tuple__33; static PyObject *__pyx_tuple__34; static PyObject *__pyx_tuple__35; @@ -1987,63 +2825,88 @@ static PyObject *__pyx_tuple__37; static PyObject *__pyx_tuple__38; static PyObject *__pyx_tuple__39; static PyObject *__pyx_tuple__40; +static PyObject *__pyx_tuple__41; static PyObject *__pyx_tuple__42; +static PyObject *__pyx_tuple__43; static PyObject *__pyx_tuple__44; +static PyObject *__pyx_tuple__45; static PyObject *__pyx_tuple__46; +static PyObject *__pyx_tuple__47; static PyObject *__pyx_tuple__48; +static PyObject *__pyx_tuple__49; static PyObject *__pyx_tuple__50; -static PyObject *__pyx_tuple__52; -static PyObject *__pyx_tuple__54; +static PyObject *__pyx_tuple__51; +static PyObject *__pyx_tuple__55; static PyObject *__pyx_tuple__56; +static PyObject *__pyx_tuple__57; static PyObject *__pyx_tuple__58; -static PyObject *__pyx_tuple__60; -static PyObject *__pyx_tuple__62; -static PyObject *__pyx_tuple__64; -static PyObject *__pyx_tuple__66; -static PyObject *__pyx_tuple__68; +static PyObject *__pyx_tuple__59; +static PyObject *__pyx_tuple__61; +static PyObject *__pyx_tuple__63; +static PyObject *__pyx_tuple__65; +static PyObject *__pyx_tuple__67; +static PyObject *__pyx_tuple__69; static PyObject *__pyx_tuple__70; static PyObject *__pyx_tuple__72; -static PyObject *__pyx_tuple__74; -static PyObject *__pyx_tuple__76; -static PyObject *__pyx_tuple__78; -static PyObject *__pyx_tuple__80; -static PyObject *__pyx_tuple__82; -static PyObject *__pyx_tuple__84; -static PyObject *__pyx_tuple__86; -static PyObject *__pyx_tuple__88; -static PyObject *__pyx_tuple__90; -static PyObject *__pyx_tuple__92; -static PyObject *__pyx_tuple__94; -static PyObject *__pyx_codeobj__41; -static PyObject *__pyx_codeobj__43; -static PyObject *__pyx_codeobj__45; -static PyObject *__pyx_codeobj__47; -static PyObject *__pyx_codeobj__49; -static PyObject *__pyx_codeobj__51; -static PyObject *__pyx_codeobj__53; -static PyObject *__pyx_codeobj__55; -static PyObject *__pyx_codeobj__57; -static PyObject *__pyx_codeobj__59; -static PyObject *__pyx_codeobj__61; -static PyObject *__pyx_codeobj__63; -static PyObject *__pyx_codeobj__65; -static PyObject *__pyx_codeobj__67; -static PyObject *__pyx_codeobj__69; +static PyObject *__pyx_tuple__73; +static PyObject *__pyx_tuple__75; +static PyObject *__pyx_tuple__77; +static PyObject *__pyx_tuple__79; +static PyObject *__pyx_tuple__81; +static PyObject *__pyx_tuple__83; +static PyObject *__pyx_tuple__85; +static PyObject *__pyx_tuple__87; +static PyObject *__pyx_tuple__89; +static PyObject *__pyx_tuple__91; +static PyObject *__pyx_tuple__93; +static PyObject *__pyx_tuple__95; +static PyObject *__pyx_tuple__97; +static PyObject *__pyx_tuple__99; +static PyObject *__pyx_codeobj__5; +static PyObject *__pyx_tuple__101; +static PyObject *__pyx_tuple__103; +static PyObject *__pyx_tuple__105; +static PyObject *__pyx_tuple__107; +static PyObject *__pyx_tuple__109; +static PyObject *__pyx_tuple__111; +static PyObject *__pyx_tuple__113; +static PyObject *__pyx_tuple__115; +static PyObject *__pyx_tuple__116; +static PyObject *__pyx_tuple__117; +static PyObject *__pyx_tuple__118; +static PyObject *__pyx_tuple__119; +static PyObject *__pyx_tuple__120; +static PyObject *__pyx_codeobj__60; +static PyObject *__pyx_codeobj__62; +static PyObject *__pyx_codeobj__64; +static PyObject *__pyx_codeobj__66; +static PyObject *__pyx_codeobj__68; static PyObject *__pyx_codeobj__71; -static PyObject *__pyx_codeobj__73; -static PyObject *__pyx_codeobj__75; -static PyObject *__pyx_codeobj__77; -static PyObject *__pyx_codeobj__79; -static PyObject *__pyx_codeobj__81; -static PyObject *__pyx_codeobj__83; -static PyObject *__pyx_codeobj__85; -static PyObject *__pyx_codeobj__87; -static PyObject *__pyx_codeobj__89; -static PyObject *__pyx_codeobj__91; -static PyObject *__pyx_codeobj__93; -static PyObject *__pyx_codeobj__95; - -/* "silx/io/specfile.pyx":233 +static PyObject *__pyx_codeobj__74; +static PyObject *__pyx_codeobj__76; +static PyObject *__pyx_codeobj__78; +static PyObject *__pyx_codeobj__80; +static PyObject *__pyx_codeobj__82; +static PyObject *__pyx_codeobj__84; +static PyObject *__pyx_codeobj__86; +static PyObject *__pyx_codeobj__88; +static PyObject *__pyx_codeobj__90; +static PyObject *__pyx_codeobj__92; +static PyObject *__pyx_codeobj__94; +static PyObject *__pyx_codeobj__96; +static PyObject *__pyx_codeobj__98; +static PyObject *__pyx_codeobj__100; +static PyObject *__pyx_codeobj__102; +static PyObject *__pyx_codeobj__104; +static PyObject *__pyx_codeobj__106; +static PyObject *__pyx_codeobj__108; +static PyObject *__pyx_codeobj__110; +static PyObject *__pyx_codeobj__112; +static PyObject *__pyx_codeobj__114; +static PyObject *__pyx_codeobj__121; +/* Late includes */ + +/* "silx/io/specfile.pyx":219 * * """ * def __init__(self, scan): # <<<<<<<<<<<<<< @@ -2058,9 +2921,6 @@ static PyMethodDef __pyx_mdef_4silx_2io_8specfile_3MCA_1__init__ = {"__init__", static PyObject *__pyx_pw_4silx_2io_8specfile_3MCA_1__init__(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { PyObject *__pyx_v_self = 0; PyObject *__pyx_v_scan = 0; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; PyObject *__pyx_r = 0; __Pyx_RefNannyDeclarations __Pyx_RefNannySetupContext("__init__ (wrapper)", 0); @@ -2072,23 +2932,26 @@ static PyObject *__pyx_pw_4silx_2io_8specfile_3MCA_1__init__(PyObject *__pyx_sel const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args); switch (pos_args) { case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1); + CYTHON_FALLTHROUGH; case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0); + CYTHON_FALLTHROUGH; case 0: break; default: goto __pyx_L5_argtuple_error; } kw_args = PyDict_Size(__pyx_kwds); switch (pos_args) { case 0: - if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_self)) != 0)) kw_args--; + if (likely((values[0] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_self)) != 0)) kw_args--; else goto __pyx_L5_argtuple_error; + CYTHON_FALLTHROUGH; case 1: - if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_scan)) != 0)) kw_args--; + if (likely((values[1] = __Pyx_PyDict_GetItemStr(__pyx_kwds, __pyx_n_s_scan)) != 0)) kw_args--; else { - __Pyx_RaiseArgtupleInvalid("__init__", 1, 2, 2, 1); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 233; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __Pyx_RaiseArgtupleInvalid("__init__", 1, 2, 2, 1); __PYX_ERR(0, 219, __pyx_L3_error) } } if (unlikely(kw_args > 0)) { - if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 233; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) __PYX_ERR(0, 219, __pyx_L3_error) } } else if (PyTuple_GET_SIZE(__pyx_args) != 2) { goto __pyx_L5_argtuple_error; @@ -2101,7 +2964,7 @@ static PyObject *__pyx_pw_4silx_2io_8specfile_3MCA_1__init__(PyObject *__pyx_sel } goto __pyx_L4_argument_unpacking_done; __pyx_L5_argtuple_error:; - __Pyx_RaiseArgtupleInvalid("__init__", 1, 2, 2, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 233; 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if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 237; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_scan, __pyx_n_s_mca_header_dict); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 223, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); - if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_header, __pyx_t_1) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 237; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_header, __pyx_t_1) < 0) __PYX_ERR(0, 223, __pyx_L1_error) __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; - /* "silx/io/specfile.pyx":239 + /* "silx/io/specfile.pyx":225 * self._header = scan.mca_header_dict * * self.calibration = [] # <<<<<<<<<<<<<< * """List of lists of calibration values, * one list of 3 floats per MCA device or a single list applying to */ - __pyx_t_1 = PyList_New(0); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 239; __pyx_clineno = __LINE__; 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goto __pyx_L0; - /* "silx/io/specfile.pyx":955 - * return ret_array + /* "silx/io/specfile.pyx":954 + * return numpy.asarray(ret_array) * * def scan_header(self, scan_index): # <<<<<<<<<<<<<< * """Return list of scan header lines. @@ -11584,7 +13718,7 @@ static PyObject *__pyx_pf_4silx_2io_8specfile_8SpecFile_37scan_header(struct __p return __pyx_r; } -/* "silx/io/specfile.pyx":985 +/* "silx/io/specfile.pyx":984 * return lines_list * * def file_header(self, scan_index=0): # <<<<<<<<<<<<<< @@ -11597,9 +13731,6 @@ static PyObject *__pyx_pw_4silx_2io_8specfile_8SpecFile_40file_header(PyObject * static char __pyx_doc_4silx_2io_8specfile_8SpecFile_39file_header[] = "SpecFile.file_header(self, scan_index=0)\nReturn list of file header lines.\n\n A file header contains all lines between a ``#F`` header line and\n a ``#S`` header line (start of scan). 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nogil: # <<<<<<<<<<<<<< + * if arg < 0: + * return -arg + */ + +static Py_ssize_t abs_py_ssize_t(Py_ssize_t __pyx_v_arg) { + Py_ssize_t __pyx_r; + int __pyx_t_1; + + /* "View.MemoryView":1105 + * + * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil: + * if arg < 0: # <<<<<<<<<<<<<< + * return -arg + * else: + */ + __pyx_t_1 = ((__pyx_v_arg < 0) != 0); if (__pyx_t_1) { - /* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":978 - * cdef inline object get_array_base(ndarray arr): - * if arr.base is NULL: - * return None # <<<<<<<<<<<<<< + /* "View.MemoryView":1106 + * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil: + * if arg < 0: + * return -arg # <<<<<<<<<<<<<< * else: - * return <object>arr.base + * return arg */ - __Pyx_XDECREF(__pyx_r); - __Pyx_INCREF(Py_None); - __pyx_r = Py_None; + __pyx_r = (-__pyx_v_arg); goto __pyx_L0; + + /* "View.MemoryView":1105 + * + * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil: + * if arg < 0: # <<<<<<<<<<<<<< + * return -arg + * else: + */ } + + /* "View.MemoryView":1108 + * return -arg + * else: + * return arg # <<<<<<<<<<<<<< + * + * @cname('__pyx_get_best_slice_order') + */ /*else*/ { + __pyx_r = __pyx_v_arg; + goto __pyx_L0; + } - /* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":980 - * return None + /* "View.MemoryView":1104 + * + * + * cdef Py_ssize_t abs_py_ssize_t(Py_ssize_t arg) nogil: # <<<<<<<<<<<<<< + * if arg < 0: + * return -arg + */ + + /* function exit code */ + __pyx_L0:; + return __pyx_r; +} + +/* "View.MemoryView":1111 + * + * @cname('__pyx_get_best_slice_order') + * cdef char get_best_order(__Pyx_memviewslice *mslice, int ndim) nogil: # <<<<<<<<<<<<<< + * """ + * Figure out the best memory access order for a given slice. + */ + +static char __pyx_get_best_slice_order(__Pyx_memviewslice *__pyx_v_mslice, int __pyx_v_ndim) { + int __pyx_v_i; + Py_ssize_t __pyx_v_c_stride; + Py_ssize_t __pyx_v_f_stride; + char __pyx_r; + int __pyx_t_1; + int __pyx_t_2; + int __pyx_t_3; + int __pyx_t_4; + + /* "View.MemoryView":1116 + * """ + * cdef int i + * cdef Py_ssize_t c_stride = 0 # <<<<<<<<<<<<<< + * cdef Py_ssize_t f_stride = 0 + * + */ + __pyx_v_c_stride = 0; + + /* "View.MemoryView":1117 + * cdef int i + * cdef Py_ssize_t c_stride = 0 + * cdef Py_ssize_t f_stride = 0 # <<<<<<<<<<<<<< + * + * for i in range(ndim - 1, -1, -1): + */ + __pyx_v_f_stride = 0; + + /* "View.MemoryView":1119 + * cdef Py_ssize_t f_stride = 0 + * + * for i in range(ndim - 1, -1, -1): # <<<<<<<<<<<<<< + * if mslice.shape[i] > 1: + * c_stride = mslice.strides[i] + */ + for (__pyx_t_1 = (__pyx_v_ndim - 1); __pyx_t_1 > -1; __pyx_t_1-=1) { + __pyx_v_i = __pyx_t_1; + + /* "View.MemoryView":1120 + * + * for i in range(ndim - 1, -1, -1): + * if mslice.shape[i] > 1: # <<<<<<<<<<<<<< + * c_stride = mslice.strides[i] + * break + */ + __pyx_t_2 = (((__pyx_v_mslice->shape[__pyx_v_i]) > 1) != 0); + if (__pyx_t_2) { + + /* "View.MemoryView":1121 + * for i in range(ndim - 1, -1, -1): + * if mslice.shape[i] > 1: + * c_stride = mslice.strides[i] # <<<<<<<<<<<<<< + * break + * + */ + __pyx_v_c_stride = (__pyx_v_mslice->strides[__pyx_v_i]); + + /* "View.MemoryView":1122 + * if mslice.shape[i] > 1: + * c_stride = mslice.strides[i] + * break # <<<<<<<<<<<<<< + * + * for i in range(ndim): + */ + goto __pyx_L4_break; + + /* "View.MemoryView":1120 + * + * for i in range(ndim - 1, -1, -1): + * if mslice.shape[i] > 1: # <<<<<<<<<<<<<< + * c_stride = mslice.strides[i] + * break + */ + } + } + __pyx_L4_break:; + + /* "View.MemoryView":1124 + * break + * + * for i in range(ndim): # <<<<<<<<<<<<<< + * if mslice.shape[i] > 1: + * f_stride = mslice.strides[i] + */ + __pyx_t_1 = __pyx_v_ndim; + __pyx_t_3 = __pyx_t_1; + for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { + __pyx_v_i = __pyx_t_4; + + /* "View.MemoryView":1125 + * + * for i in range(ndim): + * if mslice.shape[i] > 1: # <<<<<<<<<<<<<< + * f_stride = mslice.strides[i] + * break + */ + __pyx_t_2 = (((__pyx_v_mslice->shape[__pyx_v_i]) > 1) != 0); + if (__pyx_t_2) { + + /* "View.MemoryView":1126 + * for i in range(ndim): + * if mslice.shape[i] > 1: + * f_stride = mslice.strides[i] # <<<<<<<<<<<<<< + * break + * + */ + __pyx_v_f_stride = (__pyx_v_mslice->strides[__pyx_v_i]); + + /* "View.MemoryView":1127 + * if mslice.shape[i] > 1: + * f_stride = mslice.strides[i] + * break # <<<<<<<<<<<<<< + * + * if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride): + */ + goto __pyx_L7_break; + + /* "View.MemoryView":1125 + * + * for i in range(ndim): + * if mslice.shape[i] > 1: # <<<<<<<<<<<<<< + * f_stride = mslice.strides[i] + * break + */ + } + } + __pyx_L7_break:; + + /* "View.MemoryView":1129 + * break + * + * if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride): # <<<<<<<<<<<<<< + * return 'C' * else: - * return <object>arr.base # <<<<<<<<<<<<<< */ - __Pyx_XDECREF(__pyx_r); - __Pyx_INCREF(((PyObject *)__pyx_v_arr->base)); - __pyx_r = ((PyObject *)__pyx_v_arr->base); + __pyx_t_2 = ((abs_py_ssize_t(__pyx_v_c_stride) <= abs_py_ssize_t(__pyx_v_f_stride)) != 0); + if (__pyx_t_2) { + + /* "View.MemoryView":1130 + * + * if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride): + * return 'C' # <<<<<<<<<<<<<< + * else: + * return 'F' + */ + __pyx_r = 'C'; + goto __pyx_L0; + + /* "View.MemoryView":1129 + * break + * + * if abs_py_ssize_t(c_stride) <= abs_py_ssize_t(f_stride): # <<<<<<<<<<<<<< + * return 'C' + * else: + */ + } + + /* "View.MemoryView":1132 + * return 'C' + * else: + * return 'F' # <<<<<<<<<<<<<< + * + * @cython.cdivision(True) + */ + /*else*/ { + __pyx_r = 'F'; goto __pyx_L0; } - /* "../../../../usr/lib/python2.7/dist-packages/Cython/Includes/numpy/__init__.pxd":976 - * arr.base = baseptr + /* "View.MemoryView":1111 * - * cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<< - * if arr.base is NULL: - * return None + * @cname('__pyx_get_best_slice_order') + * cdef char get_best_order(__Pyx_memviewslice *mslice, int ndim) nogil: # <<<<<<<<<<<<<< + * """ + * Figure out the best memory access order for a given slice. + */ + + /* function exit code */ + __pyx_L0:; + return __pyx_r; +} + +/* "View.MemoryView":1135 + * + * @cython.cdivision(True) + * cdef void _copy_strided_to_strided(char *src_data, Py_ssize_t *src_strides, # <<<<<<<<<<<<<< + * char *dst_data, Py_ssize_t *dst_strides, + * Py_ssize_t *src_shape, Py_ssize_t *dst_shape, + */ + +static void _copy_strided_to_strided(char *__pyx_v_src_data, Py_ssize_t *__pyx_v_src_strides, char *__pyx_v_dst_data, Py_ssize_t *__pyx_v_dst_strides, Py_ssize_t *__pyx_v_src_shape, Py_ssize_t *__pyx_v_dst_shape, int __pyx_v_ndim, size_t __pyx_v_itemsize) { + CYTHON_UNUSED Py_ssize_t __pyx_v_i; + CYTHON_UNUSED Py_ssize_t __pyx_v_src_extent; + Py_ssize_t __pyx_v_dst_extent; + Py_ssize_t __pyx_v_src_stride; + Py_ssize_t __pyx_v_dst_stride; + int __pyx_t_1; + int __pyx_t_2; + int __pyx_t_3; + Py_ssize_t __pyx_t_4; + Py_ssize_t __pyx_t_5; + Py_ssize_t __pyx_t_6; + + /* "View.MemoryView":1142 + * + * cdef Py_ssize_t i + * cdef Py_ssize_t src_extent = src_shape[0] # <<<<<<<<<<<<<< + * cdef Py_ssize_t dst_extent = dst_shape[0] + * cdef Py_ssize_t src_stride = src_strides[0] + */ + __pyx_v_src_extent = (__pyx_v_src_shape[0]); + + /* "View.MemoryView":1143 + * cdef Py_ssize_t i + * cdef Py_ssize_t src_extent = src_shape[0] + * cdef Py_ssize_t dst_extent = dst_shape[0] # <<<<<<<<<<<<<< + * cdef Py_ssize_t src_stride = src_strides[0] + * cdef Py_ssize_t dst_stride = dst_strides[0] + */ + __pyx_v_dst_extent = (__pyx_v_dst_shape[0]); + + /* "View.MemoryView":1144 + * cdef Py_ssize_t src_extent = src_shape[0] + * cdef Py_ssize_t dst_extent = dst_shape[0] + * cdef Py_ssize_t src_stride = src_strides[0] # <<<<<<<<<<<<<< + * cdef Py_ssize_t dst_stride = dst_strides[0] + * + */ + __pyx_v_src_stride = (__pyx_v_src_strides[0]); + + /* "View.MemoryView":1145 + * cdef Py_ssize_t dst_extent = dst_shape[0] + * cdef Py_ssize_t src_stride = src_strides[0] + * cdef Py_ssize_t dst_stride = dst_strides[0] # <<<<<<<<<<<<<< + * + * if ndim == 1: + */ + __pyx_v_dst_stride = (__pyx_v_dst_strides[0]); + + /* "View.MemoryView":1147 + * cdef Py_ssize_t dst_stride = dst_strides[0] + * + * if ndim == 1: # <<<<<<<<<<<<<< + * if (src_stride > 0 and dst_stride > 0 and + * <size_t> src_stride == itemsize == <size_t> dst_stride): + */ + __pyx_t_1 = ((__pyx_v_ndim == 1) != 0); + if (__pyx_t_1) { + + /* "View.MemoryView":1148 + * + * if ndim == 1: + * if (src_stride > 0 and dst_stride > 0 and # <<<<<<<<<<<<<< + * <size_t> src_stride == itemsize == <size_t> dst_stride): + * memcpy(dst_data, src_data, itemsize * dst_extent) + */ + __pyx_t_2 = ((__pyx_v_src_stride > 0) != 0); + if (__pyx_t_2) { + } else { + __pyx_t_1 = __pyx_t_2; + goto __pyx_L5_bool_binop_done; + } + __pyx_t_2 = ((__pyx_v_dst_stride > 0) != 0); + if (__pyx_t_2) { + } else { + __pyx_t_1 = __pyx_t_2; + goto __pyx_L5_bool_binop_done; + } + + /* "View.MemoryView":1149 + * if ndim == 1: + * if (src_stride > 0 and dst_stride > 0 and + * <size_t> src_stride == itemsize == <size_t> dst_stride): # <<<<<<<<<<<<<< + * memcpy(dst_data, src_data, itemsize * dst_extent) + * else: + */ + __pyx_t_2 = (((size_t)__pyx_v_src_stride) == __pyx_v_itemsize); + if (__pyx_t_2) { + __pyx_t_2 = (__pyx_v_itemsize == ((size_t)__pyx_v_dst_stride)); + } + __pyx_t_3 = (__pyx_t_2 != 0); + __pyx_t_1 = __pyx_t_3; + __pyx_L5_bool_binop_done:; + + /* "View.MemoryView":1148 + * + * if ndim == 1: + * if (src_stride > 0 and dst_stride > 0 and # <<<<<<<<<<<<<< + * <size_t> src_stride == itemsize == <size_t> dst_stride): + * memcpy(dst_data, src_data, itemsize * dst_extent) + */ + if (__pyx_t_1) { + + /* "View.MemoryView":1150 + * if (src_stride > 0 and dst_stride > 0 and + * <size_t> src_stride == itemsize == <size_t> dst_stride): + * memcpy(dst_data, src_data, itemsize * dst_extent) # <<<<<<<<<<<<<< + * else: + * for i in range(dst_extent): + */ + (void)(memcpy(__pyx_v_dst_data, __pyx_v_src_data, (__pyx_v_itemsize * __pyx_v_dst_extent))); + + /* "View.MemoryView":1148 + * + * if ndim == 1: + * if (src_stride > 0 and dst_stride > 0 and # <<<<<<<<<<<<<< + * <size_t> src_stride == itemsize == <size_t> dst_stride): + * memcpy(dst_data, src_data, itemsize * dst_extent) + */ + goto __pyx_L4; + } + + /* "View.MemoryView":1152 + * memcpy(dst_data, src_data, itemsize * dst_extent) + * else: + * for i in range(dst_extent): # <<<<<<<<<<<<<< + * memcpy(dst_data, src_data, itemsize) + * src_data += src_stride + */ + /*else*/ { + __pyx_t_4 = __pyx_v_dst_extent; + __pyx_t_5 = __pyx_t_4; + for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { + __pyx_v_i = __pyx_t_6; + + /* "View.MemoryView":1153 + * else: + * for i in range(dst_extent): + * memcpy(dst_data, src_data, itemsize) # <<<<<<<<<<<<<< + * src_data += src_stride + * dst_data += dst_stride + */ + (void)(memcpy(__pyx_v_dst_data, __pyx_v_src_data, __pyx_v_itemsize)); + + /* "View.MemoryView":1154 + * for i in range(dst_extent): + * memcpy(dst_data, src_data, itemsize) + * src_data += src_stride # <<<<<<<<<<<<<< + * dst_data += dst_stride + * else: + */ + __pyx_v_src_data = (__pyx_v_src_data + __pyx_v_src_stride); + + /* "View.MemoryView":1155 + * memcpy(dst_data, src_data, itemsize) + * src_data += src_stride + * dst_data += dst_stride # <<<<<<<<<<<<<< + * else: + * for i in range(dst_extent): + */ + __pyx_v_dst_data = (__pyx_v_dst_data + __pyx_v_dst_stride); + } + } + __pyx_L4:; + + /* "View.MemoryView":1147 + * cdef Py_ssize_t dst_stride = dst_strides[0] + * + * if ndim == 1: # <<<<<<<<<<<<<< + * if (src_stride > 0 and dst_stride > 0 and + * <size_t> src_stride == itemsize == <size_t> dst_stride): + */ + goto __pyx_L3; + } + + /* "View.MemoryView":1157 + * dst_data += dst_stride + * else: + * for i in range(dst_extent): # <<<<<<<<<<<<<< + * _copy_strided_to_strided(src_data, src_strides + 1, + * dst_data, dst_strides + 1, + */ + /*else*/ { + __pyx_t_4 = __pyx_v_dst_extent; + __pyx_t_5 = __pyx_t_4; + for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { + __pyx_v_i = __pyx_t_6; + + /* "View.MemoryView":1158 + * else: + * for i in range(dst_extent): + * _copy_strided_to_strided(src_data, src_strides + 1, # <<<<<<<<<<<<<< + * dst_data, dst_strides + 1, + * src_shape + 1, dst_shape + 1, + */ + _copy_strided_to_strided(__pyx_v_src_data, (__pyx_v_src_strides + 1), __pyx_v_dst_data, (__pyx_v_dst_strides + 1), (__pyx_v_src_shape + 1), (__pyx_v_dst_shape + 1), (__pyx_v_ndim - 1), __pyx_v_itemsize); + + /* "View.MemoryView":1162 + * src_shape + 1, dst_shape + 1, + * ndim - 1, itemsize) + * src_data += src_stride # <<<<<<<<<<<<<< + * dst_data += dst_stride + * + */ + __pyx_v_src_data = (__pyx_v_src_data + __pyx_v_src_stride); + + /* "View.MemoryView":1163 + * ndim - 1, itemsize) + * src_data += src_stride + * dst_data += dst_stride # <<<<<<<<<<<<<< + * + * cdef void copy_strided_to_strided(__Pyx_memviewslice *src, + */ + __pyx_v_dst_data = (__pyx_v_dst_data + __pyx_v_dst_stride); + } + } + __pyx_L3:; + + /* "View.MemoryView":1135 + * + * @cython.cdivision(True) + * cdef void _copy_strided_to_strided(char *src_data, Py_ssize_t *src_strides, # <<<<<<<<<<<<<< + * char *dst_data, Py_ssize_t *dst_strides, + * Py_ssize_t *src_shape, Py_ssize_t *dst_shape, + */ + + /* function exit code */ +} + +/* "View.MemoryView":1165 + * dst_data += dst_stride + * + * cdef void copy_strided_to_strided(__Pyx_memviewslice *src, # <<<<<<<<<<<<<< + * __Pyx_memviewslice *dst, + * int ndim, size_t itemsize) nogil: + */ + +static void copy_strided_to_strided(__Pyx_memviewslice *__pyx_v_src, __Pyx_memviewslice *__pyx_v_dst, int __pyx_v_ndim, size_t __pyx_v_itemsize) { + + /* "View.MemoryView":1168 + * __Pyx_memviewslice *dst, + * int ndim, size_t itemsize) nogil: + * _copy_strided_to_strided(src.data, src.strides, dst.data, dst.strides, # <<<<<<<<<<<<<< + * src.shape, dst.shape, ndim, itemsize) + * + */ + _copy_strided_to_strided(__pyx_v_src->data, __pyx_v_src->strides, __pyx_v_dst->data, __pyx_v_dst->strides, __pyx_v_src->shape, __pyx_v_dst->shape, __pyx_v_ndim, __pyx_v_itemsize); + + /* "View.MemoryView":1165 + * dst_data += dst_stride + * + * cdef void copy_strided_to_strided(__Pyx_memviewslice *src, # <<<<<<<<<<<<<< + * __Pyx_memviewslice *dst, + * int ndim, size_t itemsize) nogil: + */ + + /* function exit code */ +} + +/* "View.MemoryView":1172 + * + * @cname('__pyx_memoryview_slice_get_size') + * cdef Py_ssize_t slice_get_size(__Pyx_memviewslice *src, int ndim) nogil: # <<<<<<<<<<<<<< + * "Return the size of the memory occupied by the slice in number of bytes" + * cdef int i + */ + +static Py_ssize_t __pyx_memoryview_slice_get_size(__Pyx_memviewslice *__pyx_v_src, int __pyx_v_ndim) { + int __pyx_v_i; + Py_ssize_t __pyx_v_size; + Py_ssize_t __pyx_r; + Py_ssize_t __pyx_t_1; + int __pyx_t_2; + int __pyx_t_3; + int __pyx_t_4; + + /* "View.MemoryView":1175 + * "Return the size of the memory occupied by the slice in number of bytes" + * cdef int i + * cdef Py_ssize_t size = src.memview.view.itemsize # <<<<<<<<<<<<<< + * + * for i in range(ndim): + */ + __pyx_t_1 = __pyx_v_src->memview->view.itemsize; + __pyx_v_size = __pyx_t_1; + + /* "View.MemoryView":1177 + * cdef Py_ssize_t size = src.memview.view.itemsize + * + * for i in range(ndim): # <<<<<<<<<<<<<< + * size *= src.shape[i] + * + */ + __pyx_t_2 = __pyx_v_ndim; + __pyx_t_3 = __pyx_t_2; + for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { + __pyx_v_i = __pyx_t_4; + + /* "View.MemoryView":1178 + * + * for i in range(ndim): + * size *= src.shape[i] # <<<<<<<<<<<<<< + * + * return size + */ + __pyx_v_size = (__pyx_v_size * (__pyx_v_src->shape[__pyx_v_i])); + } + + /* "View.MemoryView":1180 + * size *= src.shape[i] + * + * return size # <<<<<<<<<<<<<< + * + * @cname('__pyx_fill_contig_strides_array') + */ + __pyx_r = __pyx_v_size; + goto __pyx_L0; + + /* "View.MemoryView":1172 + * + * @cname('__pyx_memoryview_slice_get_size') + * cdef Py_ssize_t slice_get_size(__Pyx_memviewslice *src, int ndim) nogil: # <<<<<<<<<<<<<< + * "Return the size of the memory occupied by the slice in number of bytes" + * cdef int i + */ + + /* function exit code */ + __pyx_L0:; + return __pyx_r; +} + +/* "View.MemoryView":1183 + * + * @cname('__pyx_fill_contig_strides_array') + * cdef Py_ssize_t fill_contig_strides_array( # <<<<<<<<<<<<<< + * Py_ssize_t *shape, Py_ssize_t *strides, Py_ssize_t stride, + * int ndim, char order) nogil: + */ + +static Py_ssize_t __pyx_fill_contig_strides_array(Py_ssize_t *__pyx_v_shape, Py_ssize_t *__pyx_v_strides, Py_ssize_t __pyx_v_stride, int __pyx_v_ndim, char __pyx_v_order) { + int __pyx_v_idx; + Py_ssize_t __pyx_r; + int __pyx_t_1; + int __pyx_t_2; + int __pyx_t_3; + int __pyx_t_4; + + /* "View.MemoryView":1192 + * cdef int idx + * + * if order == 'F': # <<<<<<<<<<<<<< + * for idx in range(ndim): + * strides[idx] = stride + */ + __pyx_t_1 = ((__pyx_v_order == 'F') != 0); + if (__pyx_t_1) { + + /* "View.MemoryView":1193 + * + * if order == 'F': + * for idx in range(ndim): # <<<<<<<<<<<<<< + * strides[idx] = stride + * stride = stride * shape[idx] + */ + __pyx_t_2 = __pyx_v_ndim; + __pyx_t_3 = __pyx_t_2; + for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { + __pyx_v_idx = __pyx_t_4; + + /* "View.MemoryView":1194 + * if order == 'F': + * for idx in range(ndim): + * strides[idx] = stride # <<<<<<<<<<<<<< + * stride = stride * shape[idx] + * else: + */ + (__pyx_v_strides[__pyx_v_idx]) = __pyx_v_stride; + + /* "View.MemoryView":1195 + * for idx in range(ndim): + * strides[idx] = stride + * stride = stride * shape[idx] # <<<<<<<<<<<<<< + * else: + * for idx in range(ndim - 1, -1, -1): + */ + __pyx_v_stride = (__pyx_v_stride * (__pyx_v_shape[__pyx_v_idx])); + } + + /* "View.MemoryView":1192 + * cdef int idx + * + * if order == 'F': # <<<<<<<<<<<<<< + * for idx in range(ndim): + * strides[idx] = stride + */ + goto __pyx_L3; + } + + /* "View.MemoryView":1197 + * stride = stride * shape[idx] + * else: + * for idx in range(ndim - 1, -1, -1): # 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slice_is_contig(dst, 'F', ndim) + * + */ + __pyx_t_2 = (__pyx_memviewslice_is_contig(__pyx_v_src, 'F', __pyx_v_ndim) != 0); + if (__pyx_t_2) { + + /* "View.MemoryView":1312 + * direct_copy = slice_is_contig(dst, 'C', ndim) + * elif slice_is_contig(src, 'F', ndim): + * direct_copy = slice_is_contig(dst, 'F', ndim) # <<<<<<<<<<<<<< + * + * if direct_copy: + */ + __pyx_v_direct_copy = __pyx_memviewslice_is_contig(__pyx_v_dst, 'F', __pyx_v_ndim); + + /* "View.MemoryView":1311 + * if slice_is_contig(src, 'C', ndim): + * direct_copy = slice_is_contig(dst, 'C', ndim) + * elif slice_is_contig(src, 'F', ndim): # <<<<<<<<<<<<<< + * direct_copy = slice_is_contig(dst, 'F', ndim) + * + */ + } + __pyx_L12:; + + /* "View.MemoryView":1314 + * direct_copy = slice_is_contig(dst, 'F', ndim) + * + * if direct_copy: # <<<<<<<<<<<<<< + * + * refcount_copying(&dst, dtype_is_object, ndim, False) + */ + __pyx_t_2 = (__pyx_v_direct_copy != 0); + if (__pyx_t_2) { + + /* "View.MemoryView":1316 + * if direct_copy: + * + * refcount_copying(&dst, dtype_is_object, ndim, False) # <<<<<<<<<<<<<< + * memcpy(dst.data, src.data, slice_get_size(&src, ndim)) + * refcount_copying(&dst, dtype_is_object, ndim, True) + */ + __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 0); + + /* "View.MemoryView":1317 + * + * refcount_copying(&dst, dtype_is_object, ndim, False) + * memcpy(dst.data, src.data, slice_get_size(&src, ndim)) # <<<<<<<<<<<<<< + * refcount_copying(&dst, dtype_is_object, ndim, True) + * free(tmpdata) + */ + (void)(memcpy(__pyx_v_dst.data, __pyx_v_src.data, __pyx_memoryview_slice_get_size((&__pyx_v_src), __pyx_v_ndim))); + + /* "View.MemoryView":1318 + * refcount_copying(&dst, dtype_is_object, ndim, False) + * memcpy(dst.data, src.data, slice_get_size(&src, ndim)) + * refcount_copying(&dst, dtype_is_object, ndim, True) # <<<<<<<<<<<<<< + * free(tmpdata) + * return 0 + */ + __pyx_memoryview_refcount_copying((&__pyx_v_dst), __pyx_v_dtype_is_object, __pyx_v_ndim, 1); + + /* "View.MemoryView":1319 + * memcpy(dst.data, src.data, slice_get_size(&src, ndim)) + * refcount_copying(&dst, dtype_is_object, ndim, True) + * free(tmpdata) # <<<<<<<<<<<<<< + * return 0 + * + */ + free(__pyx_v_tmpdata); + + /* "View.MemoryView":1320 + * refcount_copying(&dst, dtype_is_object, ndim, True) + * free(tmpdata) + * return 0 # <<<<<<<<<<<<<< + * + * if order == 'F' == get_best_order(&dst, ndim): + */ + __pyx_r = 0; + goto __pyx_L0; + + /* "View.MemoryView":1314 + * direct_copy = slice_is_contig(dst, 'F', ndim) + * + * if direct_copy: # <<<<<<<<<<<<<< + * + * refcount_copying(&dst, dtype_is_object, ndim, False) + */ + } + + /* "View.MemoryView":1306 + * src = tmp + * + * if not broadcasting: # <<<<<<<<<<<<<< + * + * + */ + } + + /* "View.MemoryView":1322 + * return 0 + * + * if order == 'F' == get_best_order(&dst, ndim): # <<<<<<<<<<<<<< + * + * + */ + __pyx_t_2 = (__pyx_v_order == 'F'); + if (__pyx_t_2) { + __pyx_t_2 = ('F' == __pyx_get_best_slice_order((&__pyx_v_dst), __pyx_v_ndim)); + } + __pyx_t_8 = (__pyx_t_2 != 0); + if (__pyx_t_8) { + + /* "View.MemoryView":1325 + * + * + * transpose_memslice(&src) # <<<<<<<<<<<<<< + * transpose_memslice(&dst) + * + */ + __pyx_t_5 = __pyx_memslice_transpose((&__pyx_v_src)); if (unlikely(__pyx_t_5 == ((int)0))) __PYX_ERR(1, 1325, __pyx_L1_error) + + /* "View.MemoryView":1326 + * + * transpose_memslice(&src) + * transpose_memslice(&dst) # <<<<<<<<<<<<<< + * + * refcount_copying(&dst, dtype_is_object, ndim, False) + */ + __pyx_t_5 = __pyx_memslice_transpose((&__pyx_v_dst)); if (unlikely(__pyx_t_5 == ((int)0))) __PYX_ERR(1, 1326, __pyx_L1_error) + + /* "View.MemoryView":1322 + * return 0 + * + * if order == 'F' == get_best_order(&dst, ndim): # <<<<<<<<<<<<<< + * + * + */ + } + + /* "View.MemoryView":1328 + * transpose_memslice(&dst) + * + * refcount_copying(&dst, dtype_is_object, ndim, False) # <<<<<<<<<<<<<< + * copy_strided_to_strided(&src, &dst, ndim, itemsize) + * 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} + + /* "(tree fragment)":9 + * __pyx_unpickle_Enum__set_state(<Enum> __pyx_result, __pyx_state) + * return __pyx_result + * cdef __pyx_unpickle_Enum__set_state(Enum __pyx_result, tuple __pyx_state): # <<<<<<<<<<<<<< + * __pyx_result.name = __pyx_state[0] + * if len(__pyx_state) > 1 and hasattr(__pyx_result, '__dict__'): + */ + + /* function exit code */ + __pyx_r = Py_None; __Pyx_INCREF(Py_None); + goto __pyx_L0; + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_1); + __Pyx_XDECREF(__pyx_t_6); + __Pyx_XDECREF(__pyx_t_7); + __Pyx_XDECREF(__pyx_t_8); + __Pyx_XDECREF(__pyx_t_9); + __Pyx_AddTraceback("View.MemoryView.__pyx_unpickle_Enum__set_state", __pyx_clineno, __pyx_lineno, __pyx_filename); + __pyx_r = 0; __pyx_L0:; __Pyx_XGIVEREF(__pyx_r); __Pyx_RefNannyFinishContext(); @@ -15889,16 +29307,17 @@ static PyObject *__pyx_tp_new_4silx_2io_8specfile_SpecFile(PyTypeObject *t, PyOb if (unlikely(!o)) return 0; p = ((struct __pyx_obj_4silx_2io_8specfile_SpecFile *)o); p->filename = ((PyObject*)Py_None); Py_INCREF(Py_None); - if (unlikely(__pyx_pw_4silx_2io_8specfile_8SpecFile_1__cinit__(o, a, k) < 0)) { - Py_DECREF(o); o = 0; - } + if (unlikely(__pyx_pw_4silx_2io_8specfile_8SpecFile_1__cinit__(o, a, k) < 0)) goto bad; return o; + bad: + Py_DECREF(o); o = 0; + return NULL; } static void __pyx_tp_dealloc_4silx_2io_8specfile_SpecFile(PyObject *o) { struct __pyx_obj_4silx_2io_8specfile_SpecFile *p = (struct __pyx_obj_4silx_2io_8specfile_SpecFile *)o; - #if PY_VERSION_HEX >= 0x030400a1 - if (unlikely(Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) { + #if CYTHON_USE_TP_FINALIZE + if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) { if (PyObject_CallFinalizerFromDealloc(o)) return; } #endif @@ -15945,6 +29364,8 @@ static PyMethodDef __pyx_methods_4silx_2io_8specfile_SpecFile[] = { {"number_of_mca", 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PY_MAJOR_VERSION >= 3 + 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ @@ -16061,15 +29483,6 @@ static int __pyx_tp_traverse_4silx_2io_8specfile___pyx_scope_struct____iter__(Py return 0; } -static int __pyx_tp_clear_4silx_2io_8specfile___pyx_scope_struct____iter__(PyObject *o) { - PyObject* tmp; - struct __pyx_obj_4silx_2io_8specfile___pyx_scope_struct____iter__ *p = (struct __pyx_obj_4silx_2io_8specfile___pyx_scope_struct____iter__ *)o; - tmp = ((PyObject*)p->__pyx_v_self); - p->__pyx_v_self = Py_None; Py_INCREF(Py_None); - Py_XDECREF(tmp); - return 0; -} - static PyTypeObject __pyx_type_4silx_2io_8specfile___pyx_scope_struct____iter__ = { PyVarObject_HEAD_INIT(0, 0) "silx.io.specfile.__pyx_scope_struct____iter__", /*tp_name*/ @@ -16081,8 +29494,9 @@ static PyTypeObject __pyx_type_4silx_2io_8specfile___pyx_scope_struct____iter__ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ - #else - 0, /*reserved*/ + #endif + #if PY_MAJOR_VERSION >= 3 + 0, /*tp_as_async*/ 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__pyx_tp_clear_4silx_2io_8specfile___pyx_scope_struct_1___iter__(PyObject *o) { - PyObject* tmp; - struct __pyx_obj_4silx_2io_8specfile___pyx_scope_struct_1___iter__ *p = (struct __pyx_obj_4silx_2io_8specfile___pyx_scope_struct_1___iter__ *)o; - tmp = ((PyObject*)p->__pyx_v_self); - p->__pyx_v_self = ((struct __pyx_obj_4silx_2io_8specfile_SpecFile *)Py_None); Py_INCREF(Py_None); - Py_XDECREF(tmp); - return 0; -} - static PyTypeObject __pyx_type_4silx_2io_8specfile___pyx_scope_struct_1___iter__ = { PyVarObject_HEAD_INIT(0, 0) "silx.io.specfile.__pyx_scope_struct_1___iter__", /*tp_name*/ @@ -16184,8 +29589,9 @@ static PyTypeObject __pyx_type_4silx_2io_8specfile___pyx_scope_struct_1___iter__ 0, /*tp_setattr*/ #if PY_MAJOR_VERSION < 3 0, /*tp_compare*/ - #else - 0, /*reserved*/ + #endif + #if PY_MAJOR_VERSION >= 3 + 0, /*tp_as_async*/ #endif 0, /*tp_repr*/ 0, /*tp_as_number*/ @@ -16200,7 +29606,7 @@ static PyTypeObject __pyx_type_4silx_2io_8specfile___pyx_scope_struct_1___iter__ Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ 0, /*tp_doc*/ __pyx_tp_traverse_4silx_2io_8specfile___pyx_scope_struct_1___iter__, /*tp_traverse*/ - __pyx_tp_clear_4silx_2io_8specfile___pyx_scope_struct_1___iter__, /*tp_clear*/ + 0, /*tp_clear*/ 0, /*tp_richcompare*/ 0, /*tp_weaklistoffset*/ 0, /*tp_iter*/ @@ -16229,23 +29635,708 @@ static PyTypeObject __pyx_type_4silx_2io_8specfile___pyx_scope_struct_1___iter__ 0, /*tp_finalize*/ #endif }; +static struct __pyx_vtabstruct_array __pyx_vtable_array; + +static PyObject *__pyx_tp_new_array(PyTypeObject *t, PyObject *a, PyObject *k) { + struct __pyx_array_obj *p; + PyObject *o; + if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) { + o = (*t->tp_alloc)(t, 0); + } else { + o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); + } + if (unlikely(!o)) return 0; + p = ((struct __pyx_array_obj *)o); + p->__pyx_vtab = __pyx_vtabptr_array; + p->mode = ((PyObject*)Py_None); Py_INCREF(Py_None); + p->_format = ((PyObject*)Py_None); Py_INCREF(Py_None); + if (unlikely(__pyx_array___cinit__(o, a, k) < 0)) goto bad; + return o; + bad: + Py_DECREF(o); o = 0; + return NULL; +} + +static void __pyx_tp_dealloc_array(PyObject *o) { + struct __pyx_array_obj *p = (struct __pyx_array_obj *)o; + #if CYTHON_USE_TP_FINALIZE + if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) { + if (PyObject_CallFinalizerFromDealloc(o)) return; + } + #endif + { + PyObject *etype, *eval, *etb; + PyErr_Fetch(&etype, &eval, &etb); + ++Py_REFCNT(o); + __pyx_array___dealloc__(o); + --Py_REFCNT(o); + PyErr_Restore(etype, eval, etb); + } + Py_CLEAR(p->mode); + Py_CLEAR(p->_format); + (*Py_TYPE(o)->tp_free)(o); +} +static PyObject *__pyx_sq_item_array(PyObject *o, Py_ssize_t i) { + PyObject *r; + PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; + r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); + Py_DECREF(x); + return r; +} + +static int __pyx_mp_ass_subscript_array(PyObject *o, PyObject *i, PyObject *v) { + if (v) { + return __pyx_array___setitem__(o, i, v); + } + else { + PyErr_Format(PyExc_NotImplementedError, + "Subscript deletion not supported by %.200s", Py_TYPE(o)->tp_name); + return -1; + } +} + +static PyObject *__pyx_tp_getattro_array(PyObject *o, PyObject *n) { + PyObject *v = __Pyx_PyObject_GenericGetAttr(o, n); + if (!v && PyErr_ExceptionMatches(PyExc_AttributeError)) { + PyErr_Clear(); + v = __pyx_array___getattr__(o, n); + } + return v; +} + +static PyObject *__pyx_getprop___pyx_array_memview(PyObject *o, CYTHON_UNUSED void *x) { + return __pyx_pw_15View_dot_MemoryView_5array_7memview_1__get__(o); +} + +static PyMethodDef __pyx_methods_array[] = { + {"__getattr__", (PyCFunction)__pyx_array___getattr__, METH_O|METH_COEXIST, 0}, + {"__reduce_cython__", (PyCFunction)__pyx_pw___pyx_array_1__reduce_cython__, METH_NOARGS, 0}, + {"__setstate_cython__", (PyCFunction)__pyx_pw___pyx_array_3__setstate_cython__, METH_O, 0}, + {0, 0, 0, 0} +}; + +static struct PyGetSetDef __pyx_getsets_array[] = { + {(char *)"memview", __pyx_getprop___pyx_array_memview, 0, (char *)0, 0}, + {0, 0, 0, 0, 0} +}; + +static PySequenceMethods __pyx_tp_as_sequence_array = { + __pyx_array___len__, /*sq_length*/ + 0, /*sq_concat*/ + 0, /*sq_repeat*/ + __pyx_sq_item_array, /*sq_item*/ + 0, /*sq_slice*/ + 0, /*sq_ass_item*/ + 0, /*sq_ass_slice*/ + 0, /*sq_contains*/ + 0, /*sq_inplace_concat*/ + 0, /*sq_inplace_repeat*/ +}; + +static PyMappingMethods __pyx_tp_as_mapping_array = { + __pyx_array___len__, /*mp_length*/ + __pyx_array___getitem__, /*mp_subscript*/ + __pyx_mp_ass_subscript_array, /*mp_ass_subscript*/ +}; + +static PyBufferProcs __pyx_tp_as_buffer_array = { + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getreadbuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getwritebuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getsegcount*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getcharbuffer*/ + #endif + __pyx_array_getbuffer, /*bf_getbuffer*/ + 0, /*bf_releasebuffer*/ +}; + +static PyTypeObject __pyx_type___pyx_array = { + PyVarObject_HEAD_INIT(0, 0) + "silx.io.specfile.array", /*tp_name*/ + sizeof(struct __pyx_array_obj), /*tp_basicsize*/ + 0, /*tp_itemsize*/ + __pyx_tp_dealloc_array, /*tp_dealloc*/ + 0, /*tp_print*/ + 0, /*tp_getattr*/ + 0, /*tp_setattr*/ + #if PY_MAJOR_VERSION < 3 + 0, /*tp_compare*/ + #endif + #if PY_MAJOR_VERSION >= 3 + 0, /*tp_as_async*/ + #endif + 0, /*tp_repr*/ + 0, /*tp_as_number*/ + &__pyx_tp_as_sequence_array, /*tp_as_sequence*/ + &__pyx_tp_as_mapping_array, /*tp_as_mapping*/ + 0, /*tp_hash*/ + 0, /*tp_call*/ + 0, /*tp_str*/ + __pyx_tp_getattro_array, /*tp_getattro*/ + 0, /*tp_setattro*/ + &__pyx_tp_as_buffer_array, /*tp_as_buffer*/ + Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/ + 0, /*tp_doc*/ + 0, /*tp_traverse*/ + 0, /*tp_clear*/ + 0, /*tp_richcompare*/ + 0, /*tp_weaklistoffset*/ + 0, /*tp_iter*/ + 0, /*tp_iternext*/ + __pyx_methods_array, /*tp_methods*/ + 0, /*tp_members*/ + __pyx_getsets_array, /*tp_getset*/ + 0, /*tp_base*/ + 0, /*tp_dict*/ + 0, /*tp_descr_get*/ + 0, /*tp_descr_set*/ + 0, /*tp_dictoffset*/ + 0, /*tp_init*/ + 0, /*tp_alloc*/ + __pyx_tp_new_array, /*tp_new*/ + 0, /*tp_free*/ + 0, /*tp_is_gc*/ + 0, /*tp_bases*/ + 0, /*tp_mro*/ + 0, /*tp_cache*/ + 0, /*tp_subclasses*/ + 0, /*tp_weaklist*/ + 0, /*tp_del*/ + 0, /*tp_version_tag*/ + #if PY_VERSION_HEX >= 0x030400a1 + 0, /*tp_finalize*/ + #endif +}; + +static PyObject *__pyx_tp_new_Enum(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) { + struct __pyx_MemviewEnum_obj *p; + PyObject *o; + if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) { + o = (*t->tp_alloc)(t, 0); + } else { + o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); + } + if (unlikely(!o)) return 0; + p = ((struct __pyx_MemviewEnum_obj *)o); + p->name = Py_None; Py_INCREF(Py_None); + return o; +} + +static void __pyx_tp_dealloc_Enum(PyObject *o) { + struct __pyx_MemviewEnum_obj *p = (struct __pyx_MemviewEnum_obj *)o; + #if CYTHON_USE_TP_FINALIZE + if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) { + if (PyObject_CallFinalizerFromDealloc(o)) return; + } + #endif + PyObject_GC_UnTrack(o); + Py_CLEAR(p->name); + (*Py_TYPE(o)->tp_free)(o); +} + +static int __pyx_tp_traverse_Enum(PyObject *o, visitproc v, void *a) { + int e; + struct __pyx_MemviewEnum_obj *p = (struct __pyx_MemviewEnum_obj *)o; + if (p->name) { + e = (*v)(p->name, a); if (e) return e; + } + return 0; +} + +static int __pyx_tp_clear_Enum(PyObject *o) { + PyObject* tmp; + struct __pyx_MemviewEnum_obj *p = (struct __pyx_MemviewEnum_obj *)o; + tmp = ((PyObject*)p->name); + p->name = Py_None; Py_INCREF(Py_None); + Py_XDECREF(tmp); + return 0; +} + +static PyMethodDef __pyx_methods_Enum[] = { + {"__reduce_cython__", (PyCFunction)__pyx_pw___pyx_MemviewEnum_1__reduce_cython__, METH_NOARGS, 0}, + {"__setstate_cython__", (PyCFunction)__pyx_pw___pyx_MemviewEnum_3__setstate_cython__, METH_O, 0}, + {0, 0, 0, 0} +}; + +static PyTypeObject __pyx_type___pyx_MemviewEnum = { + PyVarObject_HEAD_INIT(0, 0) + "silx.io.specfile.Enum", /*tp_name*/ + sizeof(struct __pyx_MemviewEnum_obj), /*tp_basicsize*/ + 0, /*tp_itemsize*/ + __pyx_tp_dealloc_Enum, /*tp_dealloc*/ + 0, /*tp_print*/ + 0, /*tp_getattr*/ + 0, /*tp_setattr*/ + #if PY_MAJOR_VERSION < 3 + 0, /*tp_compare*/ + #endif + #if PY_MAJOR_VERSION >= 3 + 0, /*tp_as_async*/ + #endif + __pyx_MemviewEnum___repr__, /*tp_repr*/ + 0, /*tp_as_number*/ + 0, /*tp_as_sequence*/ + 0, /*tp_as_mapping*/ + 0, /*tp_hash*/ + 0, /*tp_call*/ + 0, /*tp_str*/ + 0, /*tp_getattro*/ + 0, /*tp_setattro*/ + 0, /*tp_as_buffer*/ + Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ + 0, /*tp_doc*/ + __pyx_tp_traverse_Enum, /*tp_traverse*/ + __pyx_tp_clear_Enum, /*tp_clear*/ + 0, /*tp_richcompare*/ + 0, /*tp_weaklistoffset*/ + 0, /*tp_iter*/ + 0, /*tp_iternext*/ + __pyx_methods_Enum, /*tp_methods*/ + 0, /*tp_members*/ + 0, /*tp_getset*/ + 0, /*tp_base*/ + 0, /*tp_dict*/ + 0, /*tp_descr_get*/ + 0, /*tp_descr_set*/ + 0, /*tp_dictoffset*/ + __pyx_MemviewEnum___init__, /*tp_init*/ + 0, /*tp_alloc*/ + __pyx_tp_new_Enum, /*tp_new*/ + 0, /*tp_free*/ + 0, /*tp_is_gc*/ + 0, /*tp_bases*/ + 0, /*tp_mro*/ + 0, /*tp_cache*/ + 0, /*tp_subclasses*/ + 0, /*tp_weaklist*/ + 0, /*tp_del*/ + 0, /*tp_version_tag*/ + #if PY_VERSION_HEX >= 0x030400a1 + 0, /*tp_finalize*/ + #endif +}; +static struct __pyx_vtabstruct_memoryview __pyx_vtable_memoryview; + +static PyObject *__pyx_tp_new_memoryview(PyTypeObject *t, PyObject *a, PyObject *k) { + struct __pyx_memoryview_obj *p; + PyObject *o; + if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) { + o = (*t->tp_alloc)(t, 0); + } else { + o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0); + } + if (unlikely(!o)) return 0; + p = ((struct __pyx_memoryview_obj *)o); + p->__pyx_vtab = __pyx_vtabptr_memoryview; + p->obj = Py_None; Py_INCREF(Py_None); + p->_size = Py_None; Py_INCREF(Py_None); + p->_array_interface = Py_None; Py_INCREF(Py_None); + p->view.obj = NULL; + if (unlikely(__pyx_memoryview___cinit__(o, a, k) < 0)) goto bad; + return o; + bad: + Py_DECREF(o); o = 0; + return NULL; +} + +static void __pyx_tp_dealloc_memoryview(PyObject *o) { + struct __pyx_memoryview_obj *p = (struct __pyx_memoryview_obj *)o; + #if CYTHON_USE_TP_FINALIZE + if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) { + if (PyObject_CallFinalizerFromDealloc(o)) return; + } + #endif + PyObject_GC_UnTrack(o); + { + PyObject *etype, *eval, *etb; + PyErr_Fetch(&etype, &eval, &etb); + ++Py_REFCNT(o); + __pyx_memoryview___dealloc__(o); + --Py_REFCNT(o); + PyErr_Restore(etype, eval, etb); + } + Py_CLEAR(p->obj); + Py_CLEAR(p->_size); + Py_CLEAR(p->_array_interface); + (*Py_TYPE(o)->tp_free)(o); +} + +static int __pyx_tp_traverse_memoryview(PyObject *o, visitproc v, void *a) { + int e; + struct __pyx_memoryview_obj *p = (struct __pyx_memoryview_obj *)o; + if (p->obj) { + e = (*v)(p->obj, a); if (e) return e; + } + if (p->_size) { + e = (*v)(p->_size, a); if (e) return e; + } + if (p->_array_interface) { + e = (*v)(p->_array_interface, a); if (e) return e; + } + if (p->view.obj) { + e = (*v)(p->view.obj, a); if (e) return e; + } + return 0; +} + +static int __pyx_tp_clear_memoryview(PyObject *o) { + PyObject* tmp; + struct __pyx_memoryview_obj *p = (struct __pyx_memoryview_obj *)o; + tmp = ((PyObject*)p->obj); + p->obj = Py_None; Py_INCREF(Py_None); + Py_XDECREF(tmp); + tmp = ((PyObject*)p->_size); + p->_size = Py_None; Py_INCREF(Py_None); + Py_XDECREF(tmp); + tmp = ((PyObject*)p->_array_interface); + p->_array_interface = Py_None; Py_INCREF(Py_None); + Py_XDECREF(tmp); + Py_CLEAR(p->view.obj); + return 0; +} +static PyObject *__pyx_sq_item_memoryview(PyObject *o, Py_ssize_t i) { + PyObject *r; + PyObject *x = PyInt_FromSsize_t(i); if(!x) return 0; + r = Py_TYPE(o)->tp_as_mapping->mp_subscript(o, x); + Py_DECREF(x); + return r; +} + +static int __pyx_mp_ass_subscript_memoryview(PyObject *o, PyObject *i, PyObject *v) { + if (v) { + return __pyx_memoryview___setitem__(o, i, v); + } + else { + PyErr_Format(PyExc_NotImplementedError, + "Subscript deletion not supported by %.200s", Py_TYPE(o)->tp_name); + return -1; + } +} + +static PyObject *__pyx_getprop___pyx_memoryview_T(PyObject *o, CYTHON_UNUSED void *x) { + return __pyx_pw_15View_dot_MemoryView_10memoryview_1T_1__get__(o); +} + +static PyObject *__pyx_getprop___pyx_memoryview_base(PyObject *o, CYTHON_UNUSED void *x) { + return __pyx_pw_15View_dot_MemoryView_10memoryview_4base_1__get__(o); +} + +static PyObject *__pyx_getprop___pyx_memoryview_shape(PyObject *o, CYTHON_UNUSED void *x) { + return __pyx_pw_15View_dot_MemoryView_10memoryview_5shape_1__get__(o); +} + +static PyObject *__pyx_getprop___pyx_memoryview_strides(PyObject *o, CYTHON_UNUSED void *x) { + return __pyx_pw_15View_dot_MemoryView_10memoryview_7strides_1__get__(o); +} + +static PyObject *__pyx_getprop___pyx_memoryview_suboffsets(PyObject *o, CYTHON_UNUSED void *x) { + return __pyx_pw_15View_dot_MemoryView_10memoryview_10suboffsets_1__get__(o); +} + +static PyObject *__pyx_getprop___pyx_memoryview_ndim(PyObject *o, CYTHON_UNUSED void *x) { + return __pyx_pw_15View_dot_MemoryView_10memoryview_4ndim_1__get__(o); +} + +static PyObject *__pyx_getprop___pyx_memoryview_itemsize(PyObject *o, CYTHON_UNUSED void *x) { + return __pyx_pw_15View_dot_MemoryView_10memoryview_8itemsize_1__get__(o); +} + +static PyObject *__pyx_getprop___pyx_memoryview_nbytes(PyObject *o, CYTHON_UNUSED void *x) { + return __pyx_pw_15View_dot_MemoryView_10memoryview_6nbytes_1__get__(o); +} + +static PyObject *__pyx_getprop___pyx_memoryview_size(PyObject *o, CYTHON_UNUSED void *x) { + return __pyx_pw_15View_dot_MemoryView_10memoryview_4size_1__get__(o); +} + +static PyMethodDef __pyx_methods_memoryview[] = { + {"is_c_contig", (PyCFunction)__pyx_memoryview_is_c_contig, METH_NOARGS, 0}, + {"is_f_contig", (PyCFunction)__pyx_memoryview_is_f_contig, METH_NOARGS, 0}, + {"copy", (PyCFunction)__pyx_memoryview_copy, METH_NOARGS, 0}, + {"copy_fortran", (PyCFunction)__pyx_memoryview_copy_fortran, METH_NOARGS, 0}, + {"__reduce_cython__", (PyCFunction)__pyx_pw___pyx_memoryview_1__reduce_cython__, METH_NOARGS, 0}, + {"__setstate_cython__", (PyCFunction)__pyx_pw___pyx_memoryview_3__setstate_cython__, METH_O, 0}, + {0, 0, 0, 0} +}; + +static struct PyGetSetDef __pyx_getsets_memoryview[] = { + {(char *)"T", __pyx_getprop___pyx_memoryview_T, 0, (char *)0, 0}, + {(char *)"base", __pyx_getprop___pyx_memoryview_base, 0, (char *)0, 0}, + {(char *)"shape", __pyx_getprop___pyx_memoryview_shape, 0, (char *)0, 0}, + {(char *)"strides", __pyx_getprop___pyx_memoryview_strides, 0, (char *)0, 0}, + {(char *)"suboffsets", __pyx_getprop___pyx_memoryview_suboffsets, 0, (char *)0, 0}, + {(char *)"ndim", __pyx_getprop___pyx_memoryview_ndim, 0, (char *)0, 0}, + {(char *)"itemsize", __pyx_getprop___pyx_memoryview_itemsize, 0, (char *)0, 0}, + {(char *)"nbytes", __pyx_getprop___pyx_memoryview_nbytes, 0, (char *)0, 0}, + {(char *)"size", __pyx_getprop___pyx_memoryview_size, 0, (char *)0, 0}, + {0, 0, 0, 0, 0} +}; + +static PySequenceMethods __pyx_tp_as_sequence_memoryview = { + __pyx_memoryview___len__, /*sq_length*/ + 0, /*sq_concat*/ + 0, /*sq_repeat*/ + __pyx_sq_item_memoryview, /*sq_item*/ + 0, /*sq_slice*/ + 0, /*sq_ass_item*/ + 0, /*sq_ass_slice*/ + 0, /*sq_contains*/ + 0, /*sq_inplace_concat*/ + 0, /*sq_inplace_repeat*/ +}; + +static PyMappingMethods __pyx_tp_as_mapping_memoryview = { + __pyx_memoryview___len__, /*mp_length*/ + __pyx_memoryview___getitem__, /*mp_subscript*/ + __pyx_mp_ass_subscript_memoryview, /*mp_ass_subscript*/ +}; + +static PyBufferProcs __pyx_tp_as_buffer_memoryview = { + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getreadbuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getwritebuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getsegcount*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getcharbuffer*/ + #endif + __pyx_memoryview_getbuffer, /*bf_getbuffer*/ + 0, /*bf_releasebuffer*/ +}; + +static PyTypeObject __pyx_type___pyx_memoryview = { + PyVarObject_HEAD_INIT(0, 0) + "silx.io.specfile.memoryview", /*tp_name*/ + sizeof(struct __pyx_memoryview_obj), /*tp_basicsize*/ + 0, /*tp_itemsize*/ + __pyx_tp_dealloc_memoryview, /*tp_dealloc*/ + 0, /*tp_print*/ + 0, /*tp_getattr*/ + 0, /*tp_setattr*/ + #if PY_MAJOR_VERSION < 3 + 0, /*tp_compare*/ + #endif + #if PY_MAJOR_VERSION >= 3 + 0, /*tp_as_async*/ + #endif + __pyx_memoryview___repr__, /*tp_repr*/ + 0, /*tp_as_number*/ + &__pyx_tp_as_sequence_memoryview, /*tp_as_sequence*/ + &__pyx_tp_as_mapping_memoryview, /*tp_as_mapping*/ + 0, /*tp_hash*/ + 0, /*tp_call*/ + __pyx_memoryview___str__, /*tp_str*/ + 0, /*tp_getattro*/ + 0, /*tp_setattro*/ + &__pyx_tp_as_buffer_memoryview, /*tp_as_buffer*/ + Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ + 0, /*tp_doc*/ + __pyx_tp_traverse_memoryview, /*tp_traverse*/ + __pyx_tp_clear_memoryview, /*tp_clear*/ + 0, /*tp_richcompare*/ + 0, /*tp_weaklistoffset*/ + 0, /*tp_iter*/ + 0, /*tp_iternext*/ + __pyx_methods_memoryview, /*tp_methods*/ + 0, /*tp_members*/ + __pyx_getsets_memoryview, /*tp_getset*/ + 0, /*tp_base*/ + 0, /*tp_dict*/ + 0, /*tp_descr_get*/ + 0, /*tp_descr_set*/ + 0, /*tp_dictoffset*/ + 0, /*tp_init*/ + 0, /*tp_alloc*/ + __pyx_tp_new_memoryview, /*tp_new*/ + 0, /*tp_free*/ + 0, /*tp_is_gc*/ + 0, /*tp_bases*/ + 0, /*tp_mro*/ + 0, /*tp_cache*/ + 0, /*tp_subclasses*/ + 0, /*tp_weaklist*/ + 0, /*tp_del*/ + 0, /*tp_version_tag*/ + #if PY_VERSION_HEX >= 0x030400a1 + 0, /*tp_finalize*/ + #endif +}; +static struct __pyx_vtabstruct__memoryviewslice __pyx_vtable__memoryviewslice; + +static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k) { + struct __pyx_memoryviewslice_obj *p; + PyObject *o = __pyx_tp_new_memoryview(t, a, k); + if (unlikely(!o)) return 0; + p = ((struct __pyx_memoryviewslice_obj *)o); + p->__pyx_base.__pyx_vtab = (struct __pyx_vtabstruct_memoryview*)__pyx_vtabptr__memoryviewslice; + p->from_object = Py_None; Py_INCREF(Py_None); + p->from_slice.memview = NULL; + return o; +} + +static void __pyx_tp_dealloc__memoryviewslice(PyObject *o) { + struct __pyx_memoryviewslice_obj *p = (struct __pyx_memoryviewslice_obj *)o; + #if CYTHON_USE_TP_FINALIZE + if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) { + if (PyObject_CallFinalizerFromDealloc(o)) return; + } + #endif + PyObject_GC_UnTrack(o); + { + PyObject *etype, *eval, *etb; + PyErr_Fetch(&etype, &eval, &etb); + ++Py_REFCNT(o); + __pyx_memoryviewslice___dealloc__(o); + --Py_REFCNT(o); + PyErr_Restore(etype, eval, etb); + } + Py_CLEAR(p->from_object); + PyObject_GC_Track(o); + __pyx_tp_dealloc_memoryview(o); +} + +static int __pyx_tp_traverse__memoryviewslice(PyObject *o, visitproc v, void *a) { + int e; + struct __pyx_memoryviewslice_obj *p = (struct __pyx_memoryviewslice_obj *)o; + e = __pyx_tp_traverse_memoryview(o, v, a); if (e) return e; + if (p->from_object) { + e = (*v)(p->from_object, a); if (e) return e; + } + return 0; +} + +static int __pyx_tp_clear__memoryviewslice(PyObject *o) { + PyObject* tmp; + struct __pyx_memoryviewslice_obj *p = (struct __pyx_memoryviewslice_obj *)o; + __pyx_tp_clear_memoryview(o); + tmp = ((PyObject*)p->from_object); + p->from_object = Py_None; Py_INCREF(Py_None); + Py_XDECREF(tmp); + __PYX_XDEC_MEMVIEW(&p->from_slice, 1); + return 0; +} + +static PyObject *__pyx_getprop___pyx_memoryviewslice_base(PyObject *o, CYTHON_UNUSED void *x) { + return __pyx_pw_15View_dot_MemoryView_16_memoryviewslice_4base_1__get__(o); +} + +static PyMethodDef __pyx_methods__memoryviewslice[] = { + {"__reduce_cython__", (PyCFunction)__pyx_pw___pyx_memoryviewslice_1__reduce_cython__, METH_NOARGS, 0}, + {"__setstate_cython__", (PyCFunction)__pyx_pw___pyx_memoryviewslice_3__setstate_cython__, METH_O, 0}, + {0, 0, 0, 0} +}; + +static struct PyGetSetDef __pyx_getsets__memoryviewslice[] = { + {(char *)"base", __pyx_getprop___pyx_memoryviewslice_base, 0, (char *)0, 0}, + {0, 0, 0, 0, 0} +}; + +static PyTypeObject __pyx_type___pyx_memoryviewslice = { + PyVarObject_HEAD_INIT(0, 0) + "silx.io.specfile._memoryviewslice", /*tp_name*/ + sizeof(struct __pyx_memoryviewslice_obj), /*tp_basicsize*/ + 0, /*tp_itemsize*/ + __pyx_tp_dealloc__memoryviewslice, /*tp_dealloc*/ + 0, /*tp_print*/ + 0, /*tp_getattr*/ + 0, /*tp_setattr*/ + #if PY_MAJOR_VERSION < 3 + 0, /*tp_compare*/ + #endif + #if PY_MAJOR_VERSION >= 3 + 0, /*tp_as_async*/ + #endif + #if CYTHON_COMPILING_IN_PYPY + __pyx_memoryview___repr__, /*tp_repr*/ + #else + 0, /*tp_repr*/ + #endif + 0, /*tp_as_number*/ + 0, /*tp_as_sequence*/ + 0, /*tp_as_mapping*/ + 0, /*tp_hash*/ + 0, /*tp_call*/ + #if CYTHON_COMPILING_IN_PYPY + __pyx_memoryview___str__, /*tp_str*/ + #else + 0, /*tp_str*/ + #endif + 0, /*tp_getattro*/ + 0, /*tp_setattro*/ + 0, /*tp_as_buffer*/ + Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/ + "Internal class for passing memoryview slices to Python", /*tp_doc*/ + __pyx_tp_traverse__memoryviewslice, /*tp_traverse*/ + __pyx_tp_clear__memoryviewslice, /*tp_clear*/ + 0, /*tp_richcompare*/ + 0, /*tp_weaklistoffset*/ + 0, /*tp_iter*/ + 0, /*tp_iternext*/ + __pyx_methods__memoryviewslice, /*tp_methods*/ + 0, /*tp_members*/ + __pyx_getsets__memoryviewslice, /*tp_getset*/ + 0, /*tp_base*/ + 0, /*tp_dict*/ + 0, /*tp_descr_get*/ + 0, /*tp_descr_set*/ + 0, /*tp_dictoffset*/ + 0, /*tp_init*/ + 0, /*tp_alloc*/ + __pyx_tp_new__memoryviewslice, /*tp_new*/ + 0, /*tp_free*/ + 0, /*tp_is_gc*/ + 0, /*tp_bases*/ + 0, /*tp_mro*/ + 0, /*tp_cache*/ + 0, /*tp_subclasses*/ + 0, /*tp_weaklist*/ + 0, /*tp_del*/ + 0, /*tp_version_tag*/ + #if PY_VERSION_HEX >= 0x030400a1 + 0, /*tp_finalize*/ + #endif +}; static PyMethodDef __pyx_methods[] = { {0, 0, 0, 0} }; #if PY_MAJOR_VERSION >= 3 +#if CYTHON_PEP489_MULTI_PHASE_INIT +static PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def); /*proto*/ +static int __pyx_pymod_exec_specfile(PyObject* module); /*proto*/ +static PyModuleDef_Slot __pyx_moduledef_slots[] = { + {Py_mod_create, (void*)__pyx_pymod_create}, + {Py_mod_exec, (void*)__pyx_pymod_exec_specfile}, + {0, NULL} +}; +#endif + static struct PyModuleDef __pyx_moduledef = { - #if PY_VERSION_HEX < 0x03020000 - { PyObject_HEAD_INIT(NULL) NULL, 0, NULL }, - #else PyModuleDef_HEAD_INIT, - #endif "specfile", __pyx_k_This_module_is_a_cython_binding, /* m_doc */ + #if CYTHON_PEP489_MULTI_PHASE_INIT + 0, /* m_size */ + #else -1, /* m_size */ + #endif __pyx_methods /* m_methods */, + #if CYTHON_PEP489_MULTI_PHASE_INIT + __pyx_moduledef_slots, /* m_slots */ + #else NULL, /* m_reload */ + #endif NULL, /* m_traverse */ NULL, /* m_clear */ NULL /* m_free */ @@ -16257,22 +30348,30 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_kp_s_, __pyx_k_, sizeof(__pyx_k_), 0, 0, 1, 0}, {&__pyx_kp_s_11_08_2017, __pyx_k_11_08_2017, sizeof(__pyx_k_11_08_2017), 0, 0, 1, 0}, {&__pyx_kp_s_2, __pyx_k_2, sizeof(__pyx_k_2), 0, 0, 1, 0}, - {&__pyx_kp_s_3, __pyx_k_3, sizeof(__pyx_k_3), 0, 0, 1, 0}, + {&__pyx_n_s_ASCII, __pyx_k_ASCII, sizeof(__pyx_k_ASCII), 0, 0, 1, 1}, {&__pyx_n_s_AttributeError, __pyx_k_AttributeError, sizeof(__pyx_k_AttributeError), 0, 0, 1, 1}, {&__pyx_kp_s_Base_exception_inherited_by_all, __pyx_k_Base_exception_inherited_by_all, sizeof(__pyx_k_Base_exception_inherited_by_all), 0, 0, 1, 0}, + {&__pyx_kp_s_Buffer_view_does_not_expose_stri, __pyx_k_Buffer_view_does_not_expose_stri, sizeof(__pyx_k_Buffer_view_does_not_expose_stri), 0, 0, 1, 0}, {&__pyx_n_s_CALIB, __pyx_k_CALIB, sizeof(__pyx_k_CALIB), 0, 0, 1, 1}, {&__pyx_n_s_CHANN, __pyx_k_CHANN, sizeof(__pyx_k_CHANN), 0, 0, 1, 1}, + {&__pyx_kp_s_Can_only_create_a_buffer_that_is, __pyx_k_Can_only_create_a_buffer_that_is, sizeof(__pyx_k_Can_only_create_a_buffer_that_is), 0, 0, 1, 0}, + {&__pyx_kp_s_Cannot_assign_to_read_only_memor, __pyx_k_Cannot_assign_to_read_only_memor, sizeof(__pyx_k_Cannot_assign_to_read_only_memor), 0, 0, 1, 0}, + {&__pyx_kp_s_Cannot_create_writable_memory_vi, __pyx_k_Cannot_create_writable_memory_vi, sizeof(__pyx_k_Cannot_create_writable_memory_vi), 0, 0, 1, 0}, {&__pyx_kp_s_Cannot_get_data_column_s_in_scan, __pyx_k_Cannot_get_data_column_s_in_scan, sizeof(__pyx_k_Cannot_get_data_column_s_in_scan), 0, 0, 1, 0}, + {&__pyx_kp_s_Cannot_index_with_type_s, __pyx_k_Cannot_index_with_type_s, sizeof(__pyx_k_Cannot_index_with_type_s), 0, 0, 1, 0}, {&__pyx_kp_s_Custom_exception_raised_when_SfN, __pyx_k_Custom_exception_raised_when_SfN, sizeof(__pyx_k_Custom_exception_raised_when_SfN), 0, 0, 1, 0}, {&__pyx_n_s_ERRORS, __pyx_k_ERRORS, sizeof(__pyx_k_ERRORS), 0, 0, 1, 1}, + {&__pyx_n_s_Ellipsis, __pyx_k_Ellipsis, sizeof(__pyx_k_Ellipsis), 0, 0, 1, 1}, + {&__pyx_kp_s_Empty_shape_tuple_for_cython_arr, __pyx_k_Empty_shape_tuple_for_cython_arr, sizeof(__pyx_k_Empty_shape_tuple_for_cython_arr), 0, 0, 1, 0}, {&__pyx_kp_s_Error_while_closing_SpecFile, __pyx_k_Error_while_closing_SpecFile, sizeof(__pyx_k_Error_while_closing_SpecFile), 0, 0, 1, 0}, - {&__pyx_n_s_Exception, __pyx_k_Exception, sizeof(__pyx_k_Exception), 0, 0, 1, 1}, {&__pyx_kp_b_F, __pyx_k_F, sizeof(__pyx_k_F), 0, 0, 0, 0}, {&__pyx_kp_s_Failed_to_retrieve_number_of_MCA, __pyx_k_Failed_to_retrieve_number_of_MCA, sizeof(__pyx_k_Failed_to_retrieve_number_of_MCA), 0, 0, 1, 0}, - {&__pyx_kp_u_Format_string_allocated_too_shor, __pyx_k_Format_string_allocated_too_shor, sizeof(__pyx_k_Format_string_allocated_too_shor), 0, 1, 0, 0}, - {&__pyx_kp_u_Format_string_allocated_too_shor_2, __pyx_k_Format_string_allocated_too_shor_2, sizeof(__pyx_k_Format_string_allocated_too_shor_2), 0, 1, 0, 0}, {&__pyx_n_s_IOError, __pyx_k_IOError, sizeof(__pyx_k_IOError), 0, 0, 1, 1}, + {&__pyx_kp_s_Incompatible_checksums_s_vs_0xb0, __pyx_k_Incompatible_checksums_s_vs_0xb0, sizeof(__pyx_k_Incompatible_checksums_s_vs_0xb0), 0, 0, 1, 0}, {&__pyx_n_s_IndexError, __pyx_k_IndexError, sizeof(__pyx_k_IndexError), 0, 0, 1, 1}, + {&__pyx_kp_s_Indirect_dimensions_not_supporte, __pyx_k_Indirect_dimensions_not_supporte, sizeof(__pyx_k_Indirect_dimensions_not_supporte), 0, 0, 1, 0}, + {&__pyx_kp_s_Invalid_mode_expected_c_or_fortr, __pyx_k_Invalid_mode_expected_c_or_fortr, sizeof(__pyx_k_Invalid_mode_expected_c_or_fortr), 0, 0, 1, 0}, + {&__pyx_kp_s_Invalid_shape_in_axis_d_d, __pyx_k_Invalid_shape_in_axis_d_d, sizeof(__pyx_k_Invalid_shape_in_axis_d_d), 0, 0, 1, 0}, {&__pyx_n_s_KeyError, __pyx_k_KeyError, sizeof(__pyx_k_KeyError), 0, 0, 1, 1}, {&__pyx_n_s_L, __pyx_k_L, sizeof(__pyx_k_L), 0, 0, 1, 1}, {&__pyx_n_s_L_header, __pyx_k_L_header, sizeof(__pyx_k_L_header), 0, 0, 1, 1}, @@ -16288,11 +30387,14 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_kp_s_MCA_index_should_be_an_integer_s, __pyx_k_MCA_index_should_be_an_integer_s, sizeof(__pyx_k_MCA_index_should_be_an_integer_s), 0, 0, 1, 0}, {&__pyx_n_s_MIT, __pyx_k_MIT, sizeof(__pyx_k_MIT), 0, 0, 1, 1}, {&__pyx_n_s_MemoryError, __pyx_k_MemoryError, sizeof(__pyx_k_MemoryError), 0, 0, 1, 1}, + {&__pyx_kp_s_MemoryView_of_r_at_0x_x, __pyx_k_MemoryView_of_r_at_0x_x, sizeof(__pyx_k_MemoryView_of_r_at_0x_x), 0, 0, 1, 0}, + {&__pyx_kp_s_MemoryView_of_r_object, __pyx_k_MemoryView_of_r_object, sizeof(__pyx_k_MemoryView_of_r_object), 0, 0, 1, 0}, {&__pyx_kp_s_No_MCA_spectrum_found_in_this_sc, __pyx_k_No_MCA_spectrum_found_in_this_sc, sizeof(__pyx_k_No_MCA_spectrum_found_in_this_sc), 0, 0, 1, 0}, - {&__pyx_kp_u_Non_native_byte_order_not_suppor, __pyx_k_Non_native_byte_order_not_suppor, sizeof(__pyx_k_Non_native_byte_order_not_suppor), 0, 1, 0, 0}, + {&__pyx_n_b_O, __pyx_k_O, sizeof(__pyx_k_O), 0, 0, 0, 1}, + {&__pyx_kp_s_Out_of_bounds_on_buffer_access_a, __pyx_k_Out_of_bounds_on_buffer_access_a, sizeof(__pyx_k_Out_of_bounds_on_buffer_access_a), 0, 0, 1, 0}, {&__pyx_kp_s_P_Knobel, __pyx_k_P_Knobel, sizeof(__pyx_k_P_Knobel), 0, 0, 1, 0}, {&__pyx_kp_s_Parameter_value_must_be_a_string, __pyx_k_Parameter_value_must_be_a_string, sizeof(__pyx_k_Parameter_value_must_be_a_string), 0, 0, 1, 0}, - {&__pyx_n_s_RuntimeError, __pyx_k_RuntimeError, sizeof(__pyx_k_RuntimeError), 0, 0, 1, 1}, + {&__pyx_n_s_PickleError, __pyx_k_PickleError, sizeof(__pyx_k_PickleError), 0, 0, 1, 1}, {&__pyx_kp_b_S, __pyx_k_S, sizeof(__pyx_k_S), 0, 0, 0, 0}, {&__pyx_n_s_SF_ERR_FILE_OPEN, __pyx_k_SF_ERR_FILE_OPEN, sizeof(__pyx_k_SF_ERR_FILE_OPEN), 0, 0, 1, 1}, {&__pyx_n_s_SF_ERR_NO_ERRORS, __pyx_k_SF_ERR_NO_ERRORS, sizeof(__pyx_k_SF_ERR_NO_ERRORS), 0, 0, 1, 1}, @@ -16318,6 +30420,8 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_Scan_record_exists_in_hdr, __pyx_k_Scan_record_exists_in_hdr, sizeof(__pyx_k_Scan_record_exists_in_hdr), 0, 0, 1, 1}, {&__pyx_n_s_Scan_scan_header, __pyx_k_Scan_scan_header, sizeof(__pyx_k_Scan_scan_header), 0, 0, 1, 1}, {&__pyx_n_s_Scan_scan_header_dict, __pyx_k_Scan_scan_header_dict, sizeof(__pyx_k_Scan_scan_header_dict), 0, 0, 1, 1}, + {&__pyx_kp_s_SfDataColByName_returned_1_witho, __pyx_k_SfDataColByName_returned_1_witho, sizeof(__pyx_k_SfDataColByName_returned_1_witho), 0, 0, 1, 0}, + {&__pyx_kp_s_SfData_returned_1_without_an_err, __pyx_k_SfData_returned_1_without_an_err, sizeof(__pyx_k_SfData_returned_1_without_an_err), 0, 0, 1, 0}, {&__pyx_n_s_SfErrColNotFound, __pyx_k_SfErrColNotFound, sizeof(__pyx_k_SfErrColNotFound), 0, 0, 1, 1}, {&__pyx_n_s_SfErrFileClose, __pyx_k_SfErrFileClose, sizeof(__pyx_k_SfErrFileClose), 0, 0, 1, 1}, {&__pyx_n_s_SfErrFileOpen, __pyx_k_SfErrFileOpen, sizeof(__pyx_k_SfErrFileOpen), 0, 0, 1, 1}, @@ -16339,22 +30443,30 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_SpecFile___iter, __pyx_k_SpecFile___iter, sizeof(__pyx_k_SpecFile___iter), 0, 0, 1, 1}, {&__pyx_kp_s_The_scan_identification_key_can, __pyx_k_The_scan_identification_key_can, sizeof(__pyx_k_The_scan_identification_key_can), 0, 0, 1, 0}, {&__pyx_n_s_TypeError, __pyx_k_TypeError, sizeof(__pyx_k_TypeError), 0, 0, 1, 1}, + {&__pyx_kp_s_Unable_to_convert_item_to_object, __pyx_k_Unable_to_convert_item_to_object, sizeof(__pyx_k_Unable_to_convert_item_to_object), 0, 0, 1, 0}, {&__pyx_kp_s_Unable_to_parse_file_header_line, __pyx_k_Unable_to_parse_file_header_line, sizeof(__pyx_k_Unable_to_parse_file_header_line), 0, 0, 1, 0}, {&__pyx_kp_s_Unable_to_parse_scan_header_line, __pyx_k_Unable_to_parse_scan_header_line, sizeof(__pyx_k_Unable_to_parse_scan_header_line), 0, 0, 1, 0}, {&__pyx_kp_s_Valid_keys, __pyx_k_Valid_keys, sizeof(__pyx_k_Valid_keys), 0, 0, 1, 0}, {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1}, - {&__pyx_kp_s__14, __pyx_k__14, sizeof(__pyx_k__14), 0, 0, 1, 0}, + {&__pyx_n_s_View_MemoryView, __pyx_k_View_MemoryView, sizeof(__pyx_k_View_MemoryView), 0, 0, 1, 1}, + {&__pyx_kp_s__15, __pyx_k__15, sizeof(__pyx_k__15), 0, 0, 1, 0}, {&__pyx_kp_s__28, __pyx_k__28, sizeof(__pyx_k__28), 0, 0, 1, 0}, + {&__pyx_kp_u__28, __pyx_k__28, sizeof(__pyx_k__28), 0, 1, 0, 0}, {&__pyx_kp_s__30, __pyx_k__30, sizeof(__pyx_k__30), 0, 0, 1, 0}, {&__pyx_kp_s__31, __pyx_k__31, sizeof(__pyx_k__31), 0, 0, 1, 0}, - {&__pyx_kp_s__7, __pyx_k__7, sizeof(__pyx_k__7), 0, 0, 1, 0}, + {&__pyx_kp_s__8, __pyx_k__8, sizeof(__pyx_k__8), 0, 0, 1, 0}, {&__pyx_n_s_add_or_concatenate, __pyx_k_add_or_concatenate, sizeof(__pyx_k_add_or_concatenate), 0, 0, 1, 1}, {&__pyx_n_s_all_calib_values, __pyx_k_all_calib_values, sizeof(__pyx_k_all_calib_values), 0, 0, 1, 1}, {&__pyx_n_s_all_chann_values, __pyx_k_all_chann_values, sizeof(__pyx_k_all_chann_values), 0, 0, 1, 1}, + {&__pyx_n_s_allocate_buffer, __pyx_k_allocate_buffer, sizeof(__pyx_k_allocate_buffer), 0, 0, 1, 1}, {&__pyx_n_s_append, __pyx_k_append, sizeof(__pyx_k_append), 0, 0, 1, 1}, {&__pyx_n_s_args, __pyx_k_args, sizeof(__pyx_k_args), 0, 0, 1, 1}, + {&__pyx_n_s_asarray, __pyx_k_asarray, sizeof(__pyx_k_asarray), 0, 0, 1, 1}, {&__pyx_n_s_ascii, __pyx_k_ascii, sizeof(__pyx_k_ascii), 0, 0, 1, 1}, {&__pyx_n_s_authors, __pyx_k_authors, sizeof(__pyx_k_authors), 0, 0, 1, 1}, + {&__pyx_n_s_base, __pyx_k_base, sizeof(__pyx_k_base), 0, 0, 1, 1}, + {&__pyx_n_s_c, __pyx_k_c, sizeof(__pyx_k_c), 0, 0, 1, 1}, + {&__pyx_n_u_c, __pyx_k_c, sizeof(__pyx_k_c), 0, 1, 0, 1}, {&__pyx_n_s_calib_line, __pyx_k_calib_line, sizeof(__pyx_k_calib_line), 0, 0, 1, 1}, {&__pyx_n_s_calib_lines, __pyx_k_calib_lines, sizeof(__pyx_k_calib_lines), 0, 0, 1, 1}, {&__pyx_n_s_calibration, __pyx_k_calibration, sizeof(__pyx_k_calibration), 0, 0, 1, 1}, @@ -16362,22 +30474,29 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_chann_lines, __pyx_k_chann_lines, sizeof(__pyx_k_chann_lines), 0, 0, 1, 1}, {&__pyx_n_s_channels, __pyx_k_channels, sizeof(__pyx_k_channels), 0, 0, 1, 1}, {&__pyx_n_s_chunk, __pyx_k_chunk, sizeof(__pyx_k_chunk), 0, 0, 1, 1}, + {&__pyx_n_s_class, __pyx_k_class, sizeof(__pyx_k_class), 0, 0, 1, 1}, + {&__pyx_n_s_cline_in_traceback, __pyx_k_cline_in_traceback, sizeof(__pyx_k_cline_in_traceback), 0, 0, 1, 1}, {&__pyx_n_s_close, __pyx_k_close, sizeof(__pyx_k_close), 0, 0, 1, 1}, - {&__pyx_kp_u_d_d, __pyx_k_d_d, sizeof(__pyx_k_d_d), 0, 1, 0, 0}, + {&__pyx_kp_s_contiguous_and_direct, __pyx_k_contiguous_and_direct, sizeof(__pyx_k_contiguous_and_direct), 0, 0, 1, 0}, + {&__pyx_kp_s_contiguous_and_indirect, __pyx_k_contiguous_and_indirect, sizeof(__pyx_k_contiguous_and_indirect), 0, 0, 1, 0}, + {&__pyx_n_u_d, __pyx_k_d, sizeof(__pyx_k_d), 0, 1, 0, 1}, {&__pyx_n_s_data, __pyx_k_data, sizeof(__pyx_k_data), 0, 0, 1, 1}, {&__pyx_n_s_data_2, __pyx_k_data_2, sizeof(__pyx_k_data_2), 0, 0, 1, 1}, {&__pyx_n_s_data_column_by_name, __pyx_k_data_column_by_name, sizeof(__pyx_k_data_column_by_name), 0, 0, 1, 1}, {&__pyx_n_s_data_line, __pyx_k_data_line, sizeof(__pyx_k_data_line), 0, 0, 1, 1}, {&__pyx_n_s_date, __pyx_k_date, sizeof(__pyx_k_date), 0, 0, 1, 1}, {&__pyx_n_s_decode, __pyx_k_decode, sizeof(__pyx_k_decode), 0, 0, 1, 1}, + {&__pyx_n_s_dict, __pyx_k_dict, sizeof(__pyx_k_dict), 0, 0, 1, 1}, {&__pyx_n_s_dictionary, __pyx_k_dictionary, sizeof(__pyx_k_dictionary), 0, 0, 1, 1}, {&__pyx_n_s_doc, __pyx_k_doc, sizeof(__pyx_k_doc), 0, 0, 1, 1}, {&__pyx_n_s_double, __pyx_k_double, sizeof(__pyx_k_double), 0, 0, 1, 1}, {&__pyx_n_s_dtype, __pyx_k_dtype, sizeof(__pyx_k_dtype), 0, 0, 1, 1}, + {&__pyx_n_s_dtype_is_object, __pyx_k_dtype_is_object, sizeof(__pyx_k_dtype_is_object), 0, 0, 1, 1}, {&__pyx_n_s_empty, __pyx_k_empty, sizeof(__pyx_k_empty), 0, 0, 1, 1}, {&__pyx_n_s_encode, __pyx_k_encode, sizeof(__pyx_k_encode), 0, 0, 1, 1}, {&__pyx_n_s_enter, __pyx_k_enter, sizeof(__pyx_k_enter), 0, 0, 1, 1}, {&__pyx_n_s_enumerate, __pyx_k_enumerate, sizeof(__pyx_k_enumerate), 0, 0, 1, 1}, + {&__pyx_n_s_error, __pyx_k_error, sizeof(__pyx_k_error), 0, 0, 1, 1}, {&__pyx_n_s_exit, __pyx_k_exit, sizeof(__pyx_k_exit), 0, 0, 1, 1}, {&__pyx_n_s_f, __pyx_k_f, sizeof(__pyx_k_f), 0, 0, 1, 1}, {&__pyx_n_s_file_header, __pyx_k_file_header, sizeof(__pyx_k_file_header), 0, 0, 1, 1}, @@ -16385,10 +30504,16 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_file_header_dict_2, __pyx_k_file_header_dict_2, sizeof(__pyx_k_file_header_dict_2), 0, 0, 1, 1}, {&__pyx_n_s_file_header_lines, __pyx_k_file_header_lines, sizeof(__pyx_k_file_header_lines), 0, 0, 1, 1}, {&__pyx_n_s_filename, __pyx_k_filename, sizeof(__pyx_k_filename), 0, 0, 1, 1}, + {&__pyx_n_s_flags, __pyx_k_flags, sizeof(__pyx_k_flags), 0, 0, 1, 1}, + {&__pyx_n_s_format, __pyx_k_format, sizeof(__pyx_k_format), 0, 0, 1, 1}, + {&__pyx_n_s_fortran, __pyx_k_fortran, sizeof(__pyx_k_fortran), 0, 0, 1, 1}, + {&__pyx_n_u_fortran, __pyx_k_fortran, sizeof(__pyx_k_fortran), 0, 1, 0, 1}, {&__pyx_n_s_getLogger, __pyx_k_getLogger, sizeof(__pyx_k_getLogger), 0, 0, 1, 1}, {&__pyx_n_s_get_error_string, __pyx_k_get_error_string, sizeof(__pyx_k_get_error_string), 0, 0, 1, 1}, {&__pyx_n_s_get_mca, __pyx_k_get_mca, sizeof(__pyx_k_get_mca), 0, 0, 1, 1}, {&__pyx_n_s_getitem, __pyx_k_getitem, sizeof(__pyx_k_getitem), 0, 0, 1, 1}, + {&__pyx_n_s_getstate, __pyx_k_getstate, sizeof(__pyx_k_getstate), 0, 0, 1, 1}, + {&__pyx_kp_s_got_differing_extents_in_dimensi, __pyx_k_got_differing_extents_in_dimensi, sizeof(__pyx_k_got_differing_extents_in_dimensi), 0, 0, 1, 0}, {&__pyx_n_s_group, __pyx_k_group, sizeof(__pyx_k_group), 0, 0, 1, 1}, {&__pyx_n_s_handle_error, __pyx_k_handle_error, sizeof(__pyx_k_handle_error), 0, 0, 1, 1}, {&__pyx_n_s_header, __pyx_k_header, sizeof(__pyx_k_header), 0, 0, 1, 1}, @@ -16396,6 +30521,7 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_hkey, __pyx_k_hkey, sizeof(__pyx_k_hkey), 0, 0, 1, 1}, {&__pyx_n_s_hvalue, __pyx_k_hvalue, sizeof(__pyx_k_hvalue), 0, 0, 1, 1}, {&__pyx_n_s_i, __pyx_k_i, sizeof(__pyx_k_i), 0, 0, 1, 1}, + {&__pyx_n_s_id, __pyx_k_id, sizeof(__pyx_k_id), 0, 0, 1, 1}, {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1}, {&__pyx_n_s_increment, __pyx_k_increment, sizeof(__pyx_k_increment), 0, 0, 1, 1}, {&__pyx_n_s_index, __pyx_k_index, sizeof(__pyx_k_index), 0, 0, 1, 1}, @@ -16403,6 +30529,8 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_init, __pyx_k_init, sizeof(__pyx_k_init), 0, 0, 1, 1}, {&__pyx_n_s_is_specfile, __pyx_k_is_specfile, sizeof(__pyx_k_is_specfile), 0, 0, 1, 1}, {&__pyx_n_s_isfile, __pyx_k_isfile, sizeof(__pyx_k_isfile), 0, 0, 1, 1}, + {&__pyx_n_s_itemsize, __pyx_k_itemsize, sizeof(__pyx_k_itemsize), 0, 0, 1, 1}, + {&__pyx_kp_s_itemsize_0_for_cython_array, __pyx_k_itemsize_0_for_cython_array, sizeof(__pyx_k_itemsize_0_for_cython_array), 0, 0, 1, 0}, {&__pyx_n_s_iter, __pyx_k_iter, sizeof(__pyx_k_iter), 0, 0, 1, 1}, {&__pyx_n_s_join, __pyx_k_join, sizeof(__pyx_k_join), 0, 0, 1, 1}, {&__pyx_n_s_key, __pyx_k_key, sizeof(__pyx_k_key), 0, 0, 1, 1}, @@ -16428,7 +30556,9 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_mca_header_dict, __pyx_k_mca_header_dict, sizeof(__pyx_k_mca_header_dict), 0, 0, 1, 1}, {&__pyx_n_s_mca_header_dict_2, __pyx_k_mca_header_dict_2, sizeof(__pyx_k_mca_header_dict_2), 0, 0, 1, 1}, {&__pyx_n_s_mca_index, __pyx_k_mca_index, sizeof(__pyx_k_mca_index), 0, 0, 1, 1}, + {&__pyx_n_s_memview, __pyx_k_memview, sizeof(__pyx_k_memview), 0, 0, 1, 1}, {&__pyx_n_s_metaclass, __pyx_k_metaclass, sizeof(__pyx_k_metaclass), 0, 0, 1, 1}, + {&__pyx_n_s_mode, __pyx_k_mode, sizeof(__pyx_k_mode), 0, 0, 1, 1}, {&__pyx_n_s_module, __pyx_k_module, sizeof(__pyx_k_module), 0, 0, 1, 1}, {&__pyx_n_s_motor_names, __pyx_k_motor_names, sizeof(__pyx_k_motor_names), 0, 0, 1, 1}, {&__pyx_n_s_motor_names_2, __pyx_k_motor_names_2, sizeof(__pyx_k_motor_names_2), 0, 0, 1, 1}, @@ -16438,13 +30568,15 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_msg, __pyx_k_msg, sizeof(__pyx_k_msg), 0, 0, 1, 1}, {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1}, {&__pyx_n_s_name_2, __pyx_k_name_2, sizeof(__pyx_k_name_2), 0, 0, 1, 1}, - {&__pyx_kp_u_ndarray_is_not_C_contiguous, __pyx_k_ndarray_is_not_C_contiguous, sizeof(__pyx_k_ndarray_is_not_C_contiguous), 0, 1, 0, 0}, - {&__pyx_kp_u_ndarray_is_not_Fortran_contiguou, __pyx_k_ndarray_is_not_Fortran_contiguou, sizeof(__pyx_k_ndarray_is_not_Fortran_contiguou), 0, 1, 0, 0}, + {&__pyx_n_s_ndim, __pyx_k_ndim, sizeof(__pyx_k_ndim), 0, 0, 1, 1}, + {&__pyx_n_s_new, __pyx_k_new, sizeof(__pyx_k_new), 0, 0, 1, 1}, + {&__pyx_kp_s_no_default___reduce___due_to_non, __pyx_k_no_default___reduce___due_to_non, sizeof(__pyx_k_no_default___reduce___due_to_non), 0, 0, 1, 0}, {&__pyx_n_s_number, __pyx_k_number, sizeof(__pyx_k_number), 0, 0, 1, 1}, {&__pyx_n_s_number_2, __pyx_k_number_2, sizeof(__pyx_k_number_2), 0, 0, 1, 1}, {&__pyx_kp_s_number_and_M_the_order_eg_2_3, __pyx_k_number_and_M_the_order_eg_2_3, sizeof(__pyx_k_number_and_M_the_order_eg_2_3), 0, 0, 1, 0}, {&__pyx_n_s_number_of_mca, __pyx_k_number_of_mca, sizeof(__pyx_k_number_of_mca), 0, 0, 1, 1}, {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1}, + {&__pyx_n_s_obj, __pyx_k_obj, sizeof(__pyx_k_obj), 0, 0, 1, 1}, {&__pyx_n_s_object, __pyx_k_object, sizeof(__pyx_k_object), 0, 0, 1, 1}, {&__pyx_n_s_one_line_calib_values, __pyx_k_one_line_calib_values, sizeof(__pyx_k_one_line_calib_values), 0, 0, 1, 1}, {&__pyx_n_s_one_line_chann_values, __pyx_k_one_line_chann_values, sizeof(__pyx_k_one_line_chann_values), 0, 0, 1, 1}, @@ -16453,13 +30585,23 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_order_2, __pyx_k_order_2, sizeof(__pyx_k_order_2), 0, 0, 1, 1}, {&__pyx_n_s_os, __pyx_k_os, sizeof(__pyx_k_os), 0, 0, 1, 1}, {&__pyx_n_s_os_path, __pyx_k_os_path, sizeof(__pyx_k_os_path), 0, 0, 1, 1}, + {&__pyx_n_s_pack, __pyx_k_pack, sizeof(__pyx_k_pack), 0, 0, 1, 1}, {&__pyx_kp_s_param_scan_Parent_Scan_instance, __pyx_k_param_scan_Parent_Scan_instance, sizeof(__pyx_k_param_scan_Parent_Scan_instance), 0, 0, 1, 0}, {&__pyx_kp_s_param_specfile_Parent_SpecFile, __pyx_k_param_specfile_Parent_SpecFile, sizeof(__pyx_k_param_specfile_Parent_SpecFile), 0, 0, 1, 0}, {&__pyx_n_s_parse_calibration, __pyx_k_parse_calibration, sizeof(__pyx_k_parse_calibration), 0, 0, 1, 1}, {&__pyx_n_s_parse_channels, __pyx_k_parse_channels, sizeof(__pyx_k_parse_channels), 0, 0, 1, 1}, {&__pyx_n_s_path, __pyx_k_path, sizeof(__pyx_k_path), 0, 0, 1, 1}, + {&__pyx_n_s_pickle, __pyx_k_pickle, sizeof(__pyx_k_pickle), 0, 0, 1, 1}, {&__pyx_n_s_prepare, __pyx_k_prepare, sizeof(__pyx_k_prepare), 0, 0, 1, 1}, {&__pyx_n_s_property, __pyx_k_property, sizeof(__pyx_k_property), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_PickleError, __pyx_k_pyx_PickleError, sizeof(__pyx_k_pyx_PickleError), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_checksum, __pyx_k_pyx_checksum, sizeof(__pyx_k_pyx_checksum), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_getbuffer, __pyx_k_pyx_getbuffer, sizeof(__pyx_k_pyx_getbuffer), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_result, __pyx_k_pyx_result, sizeof(__pyx_k_pyx_result), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_state, __pyx_k_pyx_state, sizeof(__pyx_k_pyx_state), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_type, __pyx_k_pyx_type, sizeof(__pyx_k_pyx_type), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_unpickle_Enum, __pyx_k_pyx_unpickle_Enum, sizeof(__pyx_k_pyx_unpickle_Enum), 0, 0, 1, 1}, + {&__pyx_n_s_pyx_vtable, __pyx_k_pyx_vtable, sizeof(__pyx_k_pyx_vtable), 0, 0, 1, 1}, {&__pyx_n_s_qualname, __pyx_k_qualname, sizeof(__pyx_k_qualname), 0, 0, 1, 1}, {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1}, {&__pyx_n_s_rb, __pyx_k_rb, sizeof(__pyx_k_rb), 0, 0, 1, 1}, @@ -16467,6 +30609,9 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_read, __pyx_k_read, sizeof(__pyx_k_read), 0, 0, 1, 1}, {&__pyx_n_s_record, __pyx_k_record, sizeof(__pyx_k_record), 0, 0, 1, 1}, {&__pyx_n_s_record_exists_in_hdr, __pyx_k_record_exists_in_hdr, sizeof(__pyx_k_record_exists_in_hdr), 0, 0, 1, 1}, + {&__pyx_n_s_reduce, __pyx_k_reduce, sizeof(__pyx_k_reduce), 0, 0, 1, 1}, + {&__pyx_n_s_reduce_cython, __pyx_k_reduce_cython, sizeof(__pyx_k_reduce_cython), 0, 0, 1, 1}, + {&__pyx_n_s_reduce_ex, __pyx_k_reduce_ex, sizeof(__pyx_k_reduce_ex), 0, 0, 1, 1}, {&__pyx_n_s_ret, __pyx_k_ret, sizeof(__pyx_k_ret), 0, 0, 1, 1}, {&__pyx_n_s_scan, __pyx_k_scan, sizeof(__pyx_k_scan), 0, 0, 1, 1}, {&__pyx_n_s_scan_2, __pyx_k_scan_2, sizeof(__pyx_k_scan_2), 0, 0, 1, 1}, @@ -16480,27 +30625,38 @@ static __Pyx_StringTabEntry __pyx_string_tab[] = { {&__pyx_n_s_search, __pyx_k_search, sizeof(__pyx_k_search), 0, 0, 1, 1}, {&__pyx_n_s_self, __pyx_k_self, sizeof(__pyx_k_self), 0, 0, 1, 1}, {&__pyx_n_s_send, __pyx_k_send, sizeof(__pyx_k_send), 0, 0, 1, 1}, + {&__pyx_n_s_setstate, __pyx_k_setstate, sizeof(__pyx_k_setstate), 0, 0, 1, 1}, + {&__pyx_n_s_setstate_cython, __pyx_k_setstate_cython, sizeof(__pyx_k_setstate_cython), 0, 0, 1, 1}, {&__pyx_n_s_shape, __pyx_k_shape, sizeof(__pyx_k_shape), 0, 0, 1, 1}, {&__pyx_n_s_silx_io_specfile, __pyx_k_silx_io_specfile, sizeof(__pyx_k_silx_io_specfile), 0, 0, 1, 1}, + {&__pyx_kp_s_silx_io_specfile_pyx, __pyx_k_silx_io_specfile_pyx, sizeof(__pyx_k_silx_io_specfile_pyx), 0, 0, 1, 0}, + {&__pyx_n_s_size, __pyx_k_size, sizeof(__pyx_k_size), 0, 0, 1, 1}, {&__pyx_n_s_specfile, __pyx_k_specfile, sizeof(__pyx_k_specfile), 0, 0, 1, 1}, {&__pyx_n_s_specfile_2, __pyx_k_specfile_2, sizeof(__pyx_k_specfile_2), 0, 0, 1, 1}, {&__pyx_n_s_split, __pyx_k_split, sizeof(__pyx_k_split), 0, 0, 1, 1}, {&__pyx_n_s_start, __pyx_k_start, sizeof(__pyx_k_start), 0, 0, 1, 1}, {&__pyx_n_s_startswith, __pyx_k_startswith, sizeof(__pyx_k_startswith), 0, 0, 1, 1}, + {&__pyx_n_s_step, __pyx_k_step, sizeof(__pyx_k_step), 0, 0, 1, 1}, {&__pyx_n_s_stop, __pyx_k_stop, sizeof(__pyx_k_stop), 0, 0, 1, 1}, + {&__pyx_kp_s_strided_and_direct, __pyx_k_strided_and_direct, sizeof(__pyx_k_strided_and_direct), 0, 0, 1, 0}, + {&__pyx_kp_s_strided_and_direct_or_indirect, __pyx_k_strided_and_direct_or_indirect, sizeof(__pyx_k_strided_and_direct_or_indirect), 0, 0, 1, 0}, + {&__pyx_kp_s_strided_and_indirect, __pyx_k_strided_and_indirect, sizeof(__pyx_k_strided_and_indirect), 0, 0, 1, 0}, {&__pyx_n_s_string, __pyx_k_string, sizeof(__pyx_k_string), 0, 0, 1, 1}, {&__pyx_n_s_string_to_char_star, __pyx_k_string_to_char_star, sizeof(__pyx_k_string_to_char_star), 0, 0, 1, 1}, + {&__pyx_kp_s_stringsource, __pyx_k_stringsource, sizeof(__pyx_k_stringsource), 0, 0, 1, 0}, {&__pyx_n_s_strip, __pyx_k_strip, sizeof(__pyx_k_strip), 0, 0, 1, 1}, + {&__pyx_n_s_struct, __pyx_k_struct, sizeof(__pyx_k_struct), 0, 0, 1, 1}, {&__pyx_n_s_sub, __pyx_k_sub, sizeof(__pyx_k_sub), 0, 0, 1, 1}, {&__pyx_n_s_sys, __pyx_k_sys, sizeof(__pyx_k_sys), 0, 0, 1, 1}, {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1}, {&__pyx_kp_s_the_unique_scan_index_or_a_strin, __pyx_k_the_unique_scan_index_or_a_strin, sizeof(__pyx_k_the_unique_scan_index_or_a_strin), 0, 0, 1, 0}, {&__pyx_n_s_throw, __pyx_k_throw, sizeof(__pyx_k_throw), 0, 0, 1, 1}, {&__pyx_n_s_transpose, __pyx_k_transpose, sizeof(__pyx_k_transpose), 0, 0, 1, 1}, - {&__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_k_unknown_dtype_code_in_numpy_pxd, sizeof(__pyx_k_unknown_dtype_code_in_numpy_pxd), 0, 1, 0, 0}, - {&__pyx_kp_s_users_knobel_git_silx_silx_io_s, __pyx_k_users_knobel_git_silx_silx_io_s, sizeof(__pyx_k_users_knobel_git_silx_silx_io_s), 0, 0, 1, 0}, + {&__pyx_kp_s_unable_to_allocate_array_data, __pyx_k_unable_to_allocate_array_data, sizeof(__pyx_k_unable_to_allocate_array_data), 0, 0, 1, 0}, + {&__pyx_kp_s_unable_to_allocate_shape_and_str, __pyx_k_unable_to_allocate_shape_and_str, sizeof(__pyx_k_unable_to_allocate_shape_and_str), 0, 0, 1, 0}, + {&__pyx_n_s_unpack, __pyx_k_unpack, sizeof(__pyx_k_unpack), 0, 0, 1, 1}, + {&__pyx_n_s_update, __pyx_k_update, sizeof(__pyx_k_update), 0, 0, 1, 1}, {&__pyx_n_s_value, __pyx_k_value, sizeof(__pyx_k_value), 0, 0, 1, 1}, - {&__pyx_n_s_version, __pyx_k_version, sizeof(__pyx_k_version), 0, 0, 1, 1}, {&__pyx_n_s_version_info, __pyx_k_version_info, sizeof(__pyx_k_version_info), 0, 0, 1, 1}, {&__pyx_kp_s_w, __pyx_k_w, sizeof(__pyx_k_w), 0, 0, 1, 0}, {&__pyx_kp_s_w_2, __pyx_k_w_2, sizeof(__pyx_k_w_2), 0, 0, 1, 0}, @@ -16508,21 +30664,21 @@ static 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__Pyx_GIVEREF(__pyx_tuple__27); - /* "silx/io/specfile.pyx":734 + /* "silx/io/specfile.pyx":720 * else: * try: * (number, order) = map(int, key.split(".")) # <<<<<<<<<<<<<< * scan_index = self.index(number, order) * except (ValueError, SfErrScanNotFound, KeyError): */ - __pyx_tuple__29 = PyTuple_Pack(1, __pyx_kp_s__28); if (unlikely(!__pyx_tuple__29)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 734; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_tuple__29 = PyTuple_Pack(1, __pyx_kp_s__28); if (unlikely(!__pyx_tuple__29)) __PYX_ERR(0, 720, __pyx_L1_error) __Pyx_GOTREF(__pyx_tuple__29); __Pyx_GIVEREF(__pyx_tuple__29); - /* "silx/io/specfile.pyx":1234 - * # error code updating isn't implemented in SfMcaCalib - * if mca_calib_error: - * raise KeyError("MCA calibration line (@CALIB) not found") # <<<<<<<<<<<<<< + /* "silx/io/specfile.pyx":888 + * if sfdata_error == -1 and not error: + * # this has happened in some situations with empty scans (#1759) + * _logger.warning("SfData 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if (unlikely(!result)) { @@ -18951,6 +33594,7 @@ static PyObject *__Pyx_GetBuiltinName(PyObject *name) { return result; } +/* RaiseArgTupleInvalid */ static void __Pyx_RaiseArgtupleInvalid( const char* func_name, int exact, @@ -18976,6 +33620,7 @@ static void __Pyx_RaiseArgtupleInvalid( (num_expected == 1) ? "" : "s", num_found); } +/* RaiseDoubleKeywords */ static void __Pyx_RaiseDoubleKeywordsError( const char* func_name, PyObject* kw_name) @@ -18989,6 +33634,7 @@ static void __Pyx_RaiseDoubleKeywordsError( #endif } +/* ParseKeywords */ static int __Pyx_ParseOptionalKeywords( PyObject *kwds, PyObject **argnames[], @@ -19090,6 +33736,164 @@ bad: return -1; } +/* PyObjectSetAttrStr */ +#if CYTHON_USE_TYPE_SLOTS +static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) { + PyTypeObject* tp = Py_TYPE(obj); + if (likely(tp->tp_setattro)) + return tp->tp_setattro(obj, attr_name, value); +#if PY_MAJOR_VERSION < 3 + if (likely(tp->tp_setattr)) + return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value); +#endif + return PyObject_SetAttr(obj, attr_name, value); +} +#endif + +/* PyCFunctionFastCall */ +#if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) { + PyCFunctionObject *func = (PyCFunctionObject*)func_obj; + PyCFunction meth = PyCFunction_GET_FUNCTION(func); + PyObject *self = PyCFunction_GET_SELF(func); + int flags = PyCFunction_GET_FLAGS(func); + assert(PyCFunction_Check(func)); + assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS))); + assert(nargs >= 0); + assert(nargs == 0 || args != NULL); + /* _PyCFunction_FastCallDict() must not be called with an exception set, + because it may clear it (directly or indirectly) and so the + caller loses its exception */ + assert(!PyErr_Occurred()); + if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) { + return (*((__Pyx_PyCFunctionFastWithKeywords)meth)) (self, args, nargs, NULL); + } else { + return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs); + } +} +#endif + +/* PyFunctionFastCall */ +#if CYTHON_FAST_PYCALL +#include "frameobject.h" +static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na, + PyObject *globals) { + PyFrameObject *f; + PyThreadState *tstate = __Pyx_PyThreadState_Current; + PyObject **fastlocals; + Py_ssize_t i; + PyObject *result; + assert(globals != NULL); + /* XXX Perhaps we should create a specialized + PyFrame_New() that doesn't take locals, but does + take builtins without sanity checking them. + */ + assert(tstate != NULL); + f = PyFrame_New(tstate, co, globals, NULL); + if (f == NULL) { + return NULL; + } + fastlocals = f->f_localsplus; + for (i = 0; i < na; i++) { + Py_INCREF(*args); + fastlocals[i] = *args++; + } + result = PyEval_EvalFrameEx(f,0); + ++tstate->recursion_depth; + Py_DECREF(f); + --tstate->recursion_depth; + return result; +} +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs) { + PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func); + PyObject *globals = PyFunction_GET_GLOBALS(func); + PyObject *argdefs = PyFunction_GET_DEFAULTS(func); + PyObject *closure; +#if PY_MAJOR_VERSION >= 3 + PyObject *kwdefs; +#endif + PyObject *kwtuple, **k; + PyObject **d; + Py_ssize_t nd; + Py_ssize_t nk; + PyObject *result; + assert(kwargs == NULL || PyDict_Check(kwargs)); + nk = kwargs ? PyDict_Size(kwargs) : 0; + if (Py_EnterRecursiveCall((char*)" while calling a Python object")) { + return NULL; + } + if ( +#if PY_MAJOR_VERSION >= 3 + co->co_kwonlyargcount == 0 && +#endif + likely(kwargs == NULL || nk == 0) && + co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) { + if (argdefs == NULL && co->co_argcount == nargs) { + result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals); + goto done; + } + else if (nargs == 0 && argdefs != NULL + && co->co_argcount == Py_SIZE(argdefs)) { + /* function called with no arguments, but all parameters have + a default value: use default values as arguments .*/ + args = &PyTuple_GET_ITEM(argdefs, 0); + result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals); + goto done; + } + } + if (kwargs != NULL) { + Py_ssize_t pos, i; + kwtuple = PyTuple_New(2 * nk); + if (kwtuple == NULL) { + result = NULL; + goto done; + } + k = &PyTuple_GET_ITEM(kwtuple, 0); + pos = i = 0; + while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) { + Py_INCREF(k[i]); + Py_INCREF(k[i+1]); + i += 2; + } + nk = i / 2; + } + else { + kwtuple = NULL; + k = NULL; + } + closure = PyFunction_GET_CLOSURE(func); +#if PY_MAJOR_VERSION >= 3 + kwdefs = PyFunction_GET_KW_DEFAULTS(func); +#endif + if (argdefs != NULL) { + d = &PyTuple_GET_ITEM(argdefs, 0); + nd = Py_SIZE(argdefs); + } + else { + d = NULL; + nd = 0; + } +#if PY_MAJOR_VERSION >= 3 + result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, kwdefs, closure); +#else + result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL, + args, nargs, + k, (int)nk, + d, (int)nd, closure); +#endif + Py_XDECREF(kwtuple); +done: + Py_LeaveRecursiveCall(); + return result; +} +#endif +#endif + +/* PyObjectCall */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) { PyObject *result; @@ -19109,6 +33913,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg } #endif +/* PyObjectCallMethO */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) { PyObject *self, *result; @@ -19128,6 +33933,7 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject } #endif +/* PyObjectCallOneArg */ #if CYTHON_COMPILING_IN_CPYTHON static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { PyObject *result; @@ -19140,28 +33946,43 @@ static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) { return result; } static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { -#ifdef __Pyx_CyFunction_USED - if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { -#else - if (likely(PyCFunction_Check(func))) { +#if CYTHON_FAST_PYCALL + if (PyFunction_Check(func)) { + return __Pyx_PyFunction_FastCall(func, &arg, 1); + } #endif + if (likely(PyCFunction_Check(func))) { if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) { return __Pyx_PyObject_CallMethO(func, arg); +#if CYTHON_FAST_PYCCALL + } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) { + return __Pyx_PyCFunction_FastCall(func, &arg, 1); +#endif } } return __Pyx__PyObject_CallOneArg(func, arg); } #else static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) { - PyObject* args = PyTuple_Pack(1, arg); - return (likely(args)) ? __Pyx_PyObject_Call(func, args, NULL) : NULL; + PyObject *result; + PyObject *args = PyTuple_Pack(1, arg); + if (unlikely(!args)) return NULL; + result = __Pyx_PyObject_Call(func, args, NULL); + Py_DECREF(args); + return result; } #endif +/* PyObjectCallNoArg */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { +#if CYTHON_FAST_PYCALL + if (PyFunction_Check(func)) { + return __Pyx_PyFunction_FastCall(func, NULL, 0); + } +#endif #ifdef __Pyx_CyFunction_USED - if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) { + if (likely(PyCFunction_Check(func) || __Pyx_TypeCheck(func, __pyx_CyFunctionType))) { #else if (likely(PyCFunction_Check(func))) { #endif @@ -19173,23 +33994,45 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) { } #endif -static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { +/* DictGetItem */ + #if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY +static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { + PyObject *value; + value = PyDict_GetItemWithError(d, key); + if (unlikely(!value)) { + if (!PyErr_Occurred()) { + PyObject* args = PyTuple_Pack(1, key); + if (likely(args)) + PyErr_SetObject(PyExc_KeyError, args); + Py_XDECREF(args); + } + return NULL; + } + Py_INCREF(value); + return value; +} +#endif + +/* RaiseTooManyValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { PyErr_Format(PyExc_ValueError, "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected); } -static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { +/* RaiseNeedMoreValuesToUnpack */ + static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { PyErr_Format(PyExc_ValueError, "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack", index, (index == 1) ? "" : "s"); } -static CYTHON_INLINE int __Pyx_IterFinish(void) { -#if CYTHON_COMPILING_IN_CPYTHON - PyThreadState *tstate = PyThreadState_GET(); +/* IterFinish */ + static CYTHON_INLINE int __Pyx_IterFinish(void) { +#if CYTHON_FAST_THREAD_STATE + PyThreadState *tstate = __Pyx_PyThreadState_Current; PyObject* exc_type = tstate->curexc_type; if (unlikely(exc_type)) { - if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) { + if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) { PyObject *exc_value, *exc_tb; exc_value = tstate->curexc_value; exc_tb = tstate->curexc_traceback; @@ -19218,7 +34061,8 @@ static CYTHON_INLINE int __Pyx_IterFinish(void) { #endif } -static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { +/* UnpackItemEndCheck */ + static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { if (unlikely(retval)) { Py_DECREF(retval); __Pyx_RaiseTooManyValuesError(expected); @@ -19229,24 +34073,36 @@ static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) { return 0; } -static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) { - PyObject *method, *result = NULL; - method = __Pyx_PyObject_GetAttrStr(obj, method_name); - if (unlikely(!method)) goto bad; -#if CYTHON_COMPILING_IN_CPYTHON +/* PyObjectCallMethod1 */ + static PyObject* __Pyx__PyObject_CallMethod1(PyObject* method, PyObject* arg) { + PyObject *result = NULL; +#if CYTHON_UNPACK_METHODS if (likely(PyMethod_Check(method))) { PyObject *self = PyMethod_GET_SELF(method); if (likely(self)) { PyObject *args; PyObject *function = PyMethod_GET_FUNCTION(method); + #if CYTHON_FAST_PYCALL + if (PyFunction_Check(function)) { + PyObject *args[2] = {self, arg}; + result = __Pyx_PyFunction_FastCall(function, args, 2); + goto done; + } + #endif + #if CYTHON_FAST_PYCCALL + if (__Pyx_PyFastCFunction_Check(function)) { + PyObject *args[2] = {self, arg}; + result = __Pyx_PyCFunction_FastCall(function, args, 2); + goto done; + } + #endif args = PyTuple_New(2); - if (unlikely(!args)) goto bad; + if (unlikely(!args)) goto done; Py_INCREF(self); PyTuple_SET_ITEM(args, 0, self); Py_INCREF(arg); PyTuple_SET_ITEM(args, 1, arg); Py_INCREF(function); - Py_DECREF(method); method = NULL; result = __Pyx_PyObject_Call(function, args, NULL); Py_DECREF(args); Py_DECREF(function); @@ -19255,12 +34111,21 @@ static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name } #endif result = __Pyx_PyObject_CallOneArg(method, arg); -bad: - Py_XDECREF(method); + goto done; +done: + return result; +} +static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) { + PyObject *method, *result; + method = __Pyx_PyObject_GetAttrStr(obj, method_name); + if (unlikely(!method)) return NULL; + result = __Pyx__PyObject_CallMethod1(method, arg); + Py_DECREF(method); return result; } -static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x) { +/* append */ + static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x) { if (likely(PyList_CheckExact(L))) { if (unlikely(__Pyx_PyList_Append(L, x) < 0)) return -1; } else { @@ -19272,7 +34137,130 @@ static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x) { return 0; } -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { +/* PyIntBinop */ + #if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { + #if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(op1))) { + const long b = intval; + long x; + long a = PyInt_AS_LONG(op1); + x = (long)((unsigned long)a + b); + if (likely((x^a) >= 0 || (x^b) >= 0)) + return PyInt_FromLong(x); + return PyLong_Type.tp_as_number->nb_add(op1, op2); + } + #endif + #if CYTHON_USE_PYLONG_INTERNALS + if (likely(PyLong_CheckExact(op1))) { + const long b = intval; + long a, x; +#ifdef HAVE_LONG_LONG + const PY_LONG_LONG llb = intval; + PY_LONG_LONG lla, llx; +#endif + const digit* digits = ((PyLongObject*)op1)->ob_digit; + const Py_ssize_t size = Py_SIZE(op1); + if (likely(__Pyx_sst_abs(size) <= 1)) { + a = likely(size) ? digits[0] : 0; + if (size == -1) a = -a; + } else { + switch (size) { + case -2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + CYTHON_FALLTHROUGH; + case 2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + CYTHON_FALLTHROUGH; + case -3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + CYTHON_FALLTHROUGH; + case 3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + CYTHON_FALLTHROUGH; + case -4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + CYTHON_FALLTHROUGH; + case 4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + CYTHON_FALLTHROUGH; + default: return PyLong_Type.tp_as_number->nb_add(op1, op2); + } + } + x = a + b; + return PyLong_FromLong(x); +#ifdef HAVE_LONG_LONG + long_long: + llx = lla + llb; + return PyLong_FromLongLong(llx); +#endif + + + } + #endif + if (PyFloat_CheckExact(op1)) { + const long b = intval; + double a = PyFloat_AS_DOUBLE(op1); + double result; + PyFPE_START_PROTECT("add", return NULL) + result = ((double)a) + (double)b; + PyFPE_END_PROTECT(result) + return PyFloat_FromDouble(result); + } + return (inplace ? PyNumber_InPlaceAdd : PyNumber_Add)(op1, op2); +} +#endif + +/* GetItemInt */ + static PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { PyObject *r; if (!j) return NULL; r = PyObject_GetItem(o, j); @@ -19280,11 +34268,15 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j return r; } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { - PyObject *r = PyList_GET_ITEM(o, i); + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + Py_ssize_t wrapped_i = i; + if (wraparound & unlikely(i < 0)) { + wrapped_i += PyList_GET_SIZE(o); + } + if ((!boundscheck) || likely((0 <= wrapped_i) & (wrapped_i < PyList_GET_SIZE(o)))) { + PyObject *r = PyList_GET_ITEM(o, wrapped_i); Py_INCREF(r); return r; } @@ -19294,11 +34286,15 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_ #endif } static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, - int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o); - if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { - PyObject *r = PyTuple_GET_ITEM(o, i); + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + Py_ssize_t wrapped_i = i; + if (wraparound & unlikely(i < 0)) { + wrapped_i += PyTuple_GET_SIZE(o); + } + if ((!boundscheck) || likely((0 <= wrapped_i) & (wrapped_i < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, wrapped_i); Py_INCREF(r); return r; } @@ -19307,9 +34303,10 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize return PySequence_GetItem(o, i); #endif } -static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, - int is_list, int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, + CYTHON_NCP_UNUSED int wraparound, + CYTHON_NCP_UNUSED int boundscheck) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS if (is_list || PyList_CheckExact(o)) { Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o); if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) { @@ -19333,10 +34330,9 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, if (likely(l >= 0)) { i += l; } else { - if (PyErr_ExceptionMatches(PyExc_OverflowError)) - PyErr_Clear(); - else + if (!PyErr_ExceptionMatches(PyExc_OverflowError)) return NULL; + PyErr_Clear(); } } return m->sq_item(o, i); @@ -19350,10 +34346,132 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); } -static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { -#if CYTHON_COMPILING_IN_CPYTHON +/* PyIntBinop */ + #if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_SubtractObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { + #if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(op1))) { + const long b = intval; + long x; + long a = PyInt_AS_LONG(op1); + x = (long)((unsigned long)a - b); + if (likely((x^a) >= 0 || (x^~b) >= 0)) + return PyInt_FromLong(x); + return PyLong_Type.tp_as_number->nb_subtract(op1, op2); + } + #endif + #if CYTHON_USE_PYLONG_INTERNALS + if (likely(PyLong_CheckExact(op1))) { + const long b = intval; + long a, x; +#ifdef HAVE_LONG_LONG + const PY_LONG_LONG llb = intval; + PY_LONG_LONG lla, llx; +#endif + const digit* digits = ((PyLongObject*)op1)->ob_digit; + const Py_ssize_t size = Py_SIZE(op1); + if (likely(__Pyx_sst_abs(size) <= 1)) { + a = likely(size) ? digits[0] : 0; + if (size == -1) a = -a; + } else { + switch (size) { + case -2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + CYTHON_FALLTHROUGH; + case 2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + CYTHON_FALLTHROUGH; + case -3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + CYTHON_FALLTHROUGH; + case 3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + CYTHON_FALLTHROUGH; + case -4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + CYTHON_FALLTHROUGH; + case 4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; +#ifdef HAVE_LONG_LONG + } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) { + lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0])); + goto long_long; +#endif + } + CYTHON_FALLTHROUGH; + default: return PyLong_Type.tp_as_number->nb_subtract(op1, op2); + } + } + x = a - b; + return PyLong_FromLong(x); +#ifdef HAVE_LONG_LONG + long_long: + llx = lla - llb; + return PyLong_FromLongLong(llx); +#endif + + + } + #endif + if (PyFloat_CheckExact(op1)) { + const long b = intval; + double a = PyFloat_AS_DOUBLE(op1); + double result; + PyFPE_START_PROTECT("subtract", return NULL) + result = ((double)a) - (double)b; + PyFPE_END_PROTECT(result) + return PyFloat_FromDouble(result); + } + return (inplace ? PyNumber_InPlaceSubtract : PyNumber_Subtract)(op1, op2); +} +#endif + +/* PyErrFetchRestore */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; - PyThreadState *tstate = PyThreadState_GET(); tmp_type = tstate->curexc_type; tmp_value = tstate->curexc_value; tmp_tb = tstate->curexc_traceback; @@ -19363,27 +34481,22 @@ static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyOb Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); -#else - PyErr_Restore(type, value, tb); -#endif } -static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { -#if CYTHON_COMPILING_IN_CPYTHON - PyThreadState *tstate = PyThreadState_GET(); +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { *type = tstate->curexc_type; *value = tstate->curexc_value; *tb = tstate->curexc_traceback; tstate->curexc_type = 0; tstate->curexc_value = 0; tstate->curexc_traceback = 0; -#else - PyErr_Fetch(type, value, tb); -#endif } +#endif -#if PY_MAJOR_VERSION < 3 +/* RaiseException */ + #if PY_MAJOR_VERSION < 3 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, CYTHON_UNUSED PyObject *cause) { + __Pyx_PyThreadState_declare Py_XINCREF(type); if (!value || value == Py_None) value = NULL; @@ -19422,6 +34535,7 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, goto raise_error; } } + __Pyx_PyThreadState_assign __Pyx_ErrRestore(type, value, tb); return; raise_error: @@ -19455,10 +34569,13 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject if (value && PyExceptionInstance_Check(value)) { instance_class = (PyObject*) Py_TYPE(value); if (instance_class != type) { - if (PyObject_IsSubclass(instance_class, type)) { - type = instance_class; - } else { + int is_subclass = PyObject_IsSubclass(instance_class, type); + if (!is_subclass) { instance_class = NULL; + } else if (unlikely(is_subclass == -1)) { + goto bad; + } else { + type = instance_class; } } } @@ -19491,11 +34608,7 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject "raise: exception class must be a subclass of BaseException"); goto bad; } -#if PY_VERSION_HEX >= 0x03030000 if (cause) { -#else - if (cause && cause != Py_None) { -#endif PyObject *fixed_cause; if (cause == Py_None) { fixed_cause = NULL; @@ -19518,12 +34631,12 @@ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject if (tb) { #if CYTHON_COMPILING_IN_PYPY PyObject *tmp_type, *tmp_value, *tmp_tb; - PyErr_Fetch(tmp_type, tmp_value, tmp_tb); + PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb); Py_INCREF(tb); PyErr_Restore(tmp_type, tmp_value, tb); Py_XDECREF(tmp_tb); #else - PyThreadState *tstate = PyThreadState_GET(); + PyThreadState *tstate = __Pyx_PyThreadState_Current; PyObject* tmp_tb = tstate->curexc_traceback; if (tb != tmp_tb) { Py_INCREF(tb); @@ -19538,42 +34651,108 @@ bad: } #endif -static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb) { -#if CYTHON_COMPILING_IN_CPYTHON - PyThreadState *tstate = PyThreadState_GET(); +/* ObjectGetItem */ + #if CYTHON_USE_TYPE_SLOTS +static PyObject *__Pyx_PyObject_GetIndex(PyObject *obj, PyObject* index) { + PyObject *runerr; + Py_ssize_t key_value; + PySequenceMethods *m = Py_TYPE(obj)->tp_as_sequence; + if (unlikely(!(m && m->sq_item))) { + PyErr_Format(PyExc_TypeError, "'%.200s' object is not subscriptable", Py_TYPE(obj)->tp_name); + return NULL; + } + key_value = __Pyx_PyIndex_AsSsize_t(index); + if (likely(key_value != -1 || !(runerr = PyErr_Occurred()))) { + return __Pyx_GetItemInt_Fast(obj, key_value, 0, 1, 1); + } + if (PyErr_GivenExceptionMatches(runerr, PyExc_OverflowError)) { + PyErr_Clear(); + PyErr_Format(PyExc_IndexError, "cannot fit '%.200s' into an index-sized integer", Py_TYPE(index)->tp_name); + } + return NULL; +} +static PyObject *__Pyx_PyObject_GetItem(PyObject *obj, PyObject* key) { + PyMappingMethods *m = Py_TYPE(obj)->tp_as_mapping; + if (likely(m && m->mp_subscript)) { + return m->mp_subscript(obj, key); + } + return __Pyx_PyObject_GetIndex(obj, key); +} +#endif + +/* SaveResetException */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + #if PY_VERSION_HEX >= 0x030700A2 + *type = tstate->exc_state.exc_type; + *value = tstate->exc_state.exc_value; + *tb = tstate->exc_state.exc_traceback; + #else *type = tstate->exc_type; *value = tstate->exc_value; *tb = tstate->exc_traceback; + #endif Py_XINCREF(*type); Py_XINCREF(*value); Py_XINCREF(*tb); -#else - PyErr_GetExcInfo(type, value, tb); -#endif } -static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb) { -#if CYTHON_COMPILING_IN_CPYTHON +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) { PyObject *tmp_type, *tmp_value, *tmp_tb; - PyThreadState *tstate = PyThreadState_GET(); + #if PY_VERSION_HEX >= 0x030700A2 + tmp_type = tstate->exc_state.exc_type; + tmp_value = tstate->exc_state.exc_value; + tmp_tb = tstate->exc_state.exc_traceback; + tstate->exc_state.exc_type = type; + tstate->exc_state.exc_value = value; + tstate->exc_state.exc_traceback = tb; + #else tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = type; tstate->exc_value = value; tstate->exc_traceback = tb; + #endif Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); -#else - PyErr_SetExcInfo(type, value, tb); +} +#endif + +/* PyErrExceptionMatches */ + #if CYTHON_FAST_THREAD_STATE +static int __Pyx_PyErr_ExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) { + Py_ssize_t i, n; + n = PyTuple_GET_SIZE(tuple); +#if PY_MAJOR_VERSION >= 3 + for (i=0; i<n; i++) { + if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1; + } #endif + for (i=0; i<n; i++) { + if (__Pyx_PyErr_GivenExceptionMatches(exc_type, PyTuple_GET_ITEM(tuple, i))) return 1; + } + return 0; +} +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) { + PyObject *exc_type = tstate->curexc_type; + if (exc_type == err) return 1; + if (unlikely(!exc_type)) return 0; + if (unlikely(PyTuple_Check(err))) + return __Pyx_PyErr_ExceptionMatchesTuple(exc_type, err); + return __Pyx_PyErr_GivenExceptionMatches(exc_type, err); } +#endif +/* GetException */ + #if CYTHON_FAST_THREAD_STATE +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { +#else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { +#endif PyObject *local_type, *local_value, *local_tb; -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_FAST_THREAD_STATE PyObject *tmp_type, *tmp_value, *tmp_tb; - PyThreadState *tstate = PyThreadState_GET(); local_type = tstate->curexc_type; local_value = tstate->curexc_value; local_tb = tstate->curexc_traceback; @@ -19584,7 +34763,7 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) PyErr_Fetch(&local_type, &local_value, &local_tb); #endif PyErr_NormalizeException(&local_type, &local_value, &local_tb); -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_FAST_THREAD_STATE if (unlikely(tstate->curexc_type)) #else if (unlikely(PyErr_Occurred())) @@ -19602,13 +34781,22 @@ static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) *type = local_type; *value = local_value; *tb = local_tb; -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_FAST_THREAD_STATE + #if PY_VERSION_HEX >= 0x030700A2 + tmp_type = tstate->exc_state.exc_type; + tmp_value = tstate->exc_state.exc_value; + tmp_tb = tstate->exc_state.exc_traceback; + tstate->exc_state.exc_type = local_type; + tstate->exc_state.exc_value = local_value; + tstate->exc_state.exc_traceback = local_tb; + #else tmp_type = tstate->exc_type; tmp_value = tstate->exc_value; tmp_tb = tstate->exc_traceback; tstate->exc_type = local_type; tstate->exc_value = local_value; tstate->exc_traceback = local_tb; + #endif Py_XDECREF(tmp_type); Py_XDECREF(tmp_value); Py_XDECREF(tmp_tb); @@ -19626,13 +34814,23 @@ bad: return -1; } -static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { +/* GetModuleGlobalName */ + static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { PyObject *result; -#if CYTHON_COMPILING_IN_CPYTHON +#if !CYTHON_AVOID_BORROWED_REFS +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 + result = _PyDict_GetItem_KnownHash(__pyx_d, name, ((PyASCIIObject *) name)->hash); + if (likely(result)) { + Py_INCREF(result); + } else if (unlikely(PyErr_Occurred())) { + result = NULL; + } else { +#else result = PyDict_GetItem(__pyx_d, name); if (likely(result)) { Py_INCREF(result); } else { +#endif #else result = PyObject_GetItem(__pyx_d, name); if (!result) { @@ -19643,15 +34841,99 @@ static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) { return result; } -static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) { +/* FastTypeChecks */ + #if CYTHON_COMPILING_IN_CPYTHON +static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) { + while (a) { + a = a->tp_base; + if (a == b) + return 1; + } + return b == &PyBaseObject_Type; +} +static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) { + PyObject *mro; + if (a == b) return 1; + mro = a->tp_mro; + if (likely(mro)) { + Py_ssize_t i, n; + n = PyTuple_GET_SIZE(mro); + for (i = 0; i < n; i++) { + if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b) + return 1; + } + return 0; + } + return __Pyx_InBases(a, b); +} +#if PY_MAJOR_VERSION == 2 +static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) { + PyObject *exception, *value, *tb; + int res; + __Pyx_PyThreadState_declare + __Pyx_PyThreadState_assign + __Pyx_ErrFetch(&exception, &value, &tb); + res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0; + if (unlikely(res == -1)) { + PyErr_WriteUnraisable(err); + res = 0; + } + if (!res) { + res = PyObject_IsSubclass(err, exc_type2); + if (unlikely(res == -1)) { + PyErr_WriteUnraisable(err); + res = 0; + } + } + __Pyx_ErrRestore(exception, value, tb); + return res; +} +#else +static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) { + int res = exc_type1 ? __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type1) : 0; + if (!res) { + res = __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2); + } + return res; +} +#endif +static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject* exc_type) { + if (likely(err == exc_type)) return 1; + if (likely(PyExceptionClass_Check(err))) { + return __Pyx_inner_PyErr_GivenExceptionMatches2(err, NULL, exc_type); + } + return PyErr_GivenExceptionMatches(err, exc_type); +} +static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *exc_type1, PyObject *exc_type2) { + if (likely(err == exc_type1 || err == exc_type2)) return 1; + if (likely(PyExceptionClass_Check(err))) { + return __Pyx_inner_PyErr_GivenExceptionMatches2(err, exc_type1, exc_type2); + } + return (PyErr_GivenExceptionMatches(err, exc_type1) || PyErr_GivenExceptionMatches(err, exc_type2)); +} +#endif + +/* None */ + static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname) { PyErr_Format(PyExc_UnboundLocalError, "local variable '%s' referenced before assignment", varname); } -static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, +/* WriteUnraisableException */ + static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, CYTHON_UNUSED int lineno, CYTHON_UNUSED const char *filename, - int full_traceback) { + int full_traceback, CYTHON_UNUSED int nogil) { PyObject *old_exc, *old_val, *old_tb; PyObject *ctx; + __Pyx_PyThreadState_declare +#ifdef WITH_THREAD + PyGILState_STATE state; + if (nogil) + state = PyGILState_Ensure(); +#ifdef _MSC_VER + else state = (PyGILState_STATE)-1; +#endif +#endif + __Pyx_PyThreadState_assign __Pyx_ErrFetch(&old_exc, &old_val, &old_tb); if (full_traceback) { Py_XINCREF(old_exc); @@ -19672,15 +34954,119 @@ static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno, PyErr_WriteUnraisable(ctx); Py_DECREF(ctx); } +#ifdef WITH_THREAD + if (nogil) + PyGILState_Release(state); +#endif } -#if !CYTHON_COMPILING_IN_CPYTHON +/* StringJoin */ + #if !CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyBytes_Join(PyObject* sep, PyObject* values) { return PyObject_CallMethodObjArgs(sep, __pyx_n_s_join, values, NULL); } #endif -static CYTHON_INLINE PyObject* __Pyx_decode_c_bytes( +/* PyObjectFormat */ + #if CYTHON_USE_UNICODE_WRITER +static PyObject* __Pyx_PyObject_Format(PyObject* obj, PyObject* format_spec) { + int ret; + _PyUnicodeWriter writer; + if (likely(PyFloat_CheckExact(obj))) { +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x03040000 + _PyUnicodeWriter_Init(&writer, 0); +#else + _PyUnicodeWriter_Init(&writer); +#endif + ret = _PyFloat_FormatAdvancedWriter( + &writer, + obj, + format_spec, 0, PyUnicode_GET_LENGTH(format_spec)); + } else if (likely(PyLong_CheckExact(obj))) { +#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x03040000 + _PyUnicodeWriter_Init(&writer, 0); +#else + _PyUnicodeWriter_Init(&writer); +#endif + ret = _PyLong_FormatAdvancedWriter( + &writer, + obj, + format_spec, 0, PyUnicode_GET_LENGTH(format_spec)); + } else { + return PyObject_Format(obj, format_spec); + } + if (unlikely(ret == -1)) { + _PyUnicodeWriter_Dealloc(&writer); + return NULL; + } + return _PyUnicodeWriter_Finish(&writer); +} +#endif + +/* JoinPyUnicode */ + static PyObject* __Pyx_PyUnicode_Join(PyObject* value_tuple, Py_ssize_t value_count, Py_ssize_t result_ulength, + CYTHON_UNUSED Py_UCS4 max_char) { +#if CYTHON_USE_UNICODE_INTERNALS && CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + PyObject *result_uval; + int result_ukind; + Py_ssize_t i, char_pos; + void *result_udata; +#if CYTHON_PEP393_ENABLED + result_uval = PyUnicode_New(result_ulength, max_char); + if (unlikely(!result_uval)) return NULL; + result_ukind = (max_char <= 255) ? PyUnicode_1BYTE_KIND : (max_char <= 65535) ? PyUnicode_2BYTE_KIND : PyUnicode_4BYTE_KIND; + result_udata = PyUnicode_DATA(result_uval); +#else + result_uval = PyUnicode_FromUnicode(NULL, result_ulength); + if (unlikely(!result_uval)) return NULL; + result_ukind = sizeof(Py_UNICODE); + result_udata = PyUnicode_AS_UNICODE(result_uval); +#endif + char_pos = 0; + for (i=0; i < value_count; i++) { + int ukind; + Py_ssize_t ulength; + void *udata; + PyObject *uval = PyTuple_GET_ITEM(value_tuple, i); + if (unlikely(__Pyx_PyUnicode_READY(uval))) + goto bad; + ulength = __Pyx_PyUnicode_GET_LENGTH(uval); + if (unlikely(!ulength)) + continue; + if (unlikely(char_pos + ulength < 0)) + goto overflow; + ukind = __Pyx_PyUnicode_KIND(uval); + udata = __Pyx_PyUnicode_DATA(uval); + if (!CYTHON_PEP393_ENABLED || ukind == result_ukind) { + memcpy((char *)result_udata + char_pos * result_ukind, udata, (size_t) (ulength * result_ukind)); + } else { + #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030300F0 || defined(_PyUnicode_FastCopyCharacters) + _PyUnicode_FastCopyCharacters(result_uval, char_pos, uval, 0, ulength); + #else + Py_ssize_t j; + for (j=0; j < ulength; j++) { + Py_UCS4 uchar = __Pyx_PyUnicode_READ(ukind, udata, j); + __Pyx_PyUnicode_WRITE(result_ukind, result_udata, char_pos+j, uchar); + } + #endif + } + char_pos += ulength; + } + return result_uval; +overflow: + PyErr_SetString(PyExc_OverflowError, "join() result is too long for a Python string"); +bad: + Py_DECREF(result_uval); + return NULL; +#else + result_ulength++; + value_count++; + return PyUnicode_Join(__pyx_empty_unicode, value_tuple); +#endif +} + +/* decode_c_bytes */ + static CYTHON_INLINE PyObject* __Pyx_decode_c_bytes( const char* cstring, Py_ssize_t length, Py_ssize_t start, Py_ssize_t stop, const char* encoding, const char* errors, PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)) { @@ -19706,73 +35092,255 @@ static CYTHON_INLINE PyObject* __Pyx_decode_c_bytes( } } -static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { - if (unlikely(!type)) { - PyErr_SetString(PyExc_SystemError, "Missing type object"); - return 0; +/* PyIntBinop */ + #if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) { + if (op1 == op2) { + Py_RETURN_TRUE; } - if (likely(PyObject_TypeCheck(obj, type))) - return 1; - PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", - Py_TYPE(obj)->tp_name, type->tp_name); - return 0; + #if PY_MAJOR_VERSION < 3 + if (likely(PyInt_CheckExact(op1))) { + const long b = intval; + long a = PyInt_AS_LONG(op1); + if (a == b) { + Py_RETURN_TRUE; + } else { + Py_RETURN_FALSE; + } + } + #endif + #if CYTHON_USE_PYLONG_INTERNALS + if (likely(PyLong_CheckExact(op1))) { + const long b = intval; + long a; + const digit* digits = ((PyLongObject*)op1)->ob_digit; + const Py_ssize_t size = Py_SIZE(op1); + if (likely(__Pyx_sst_abs(size) <= 1)) { + a = likely(size) ? digits[0] : 0; + if (size == -1) a = -a; + } else { + switch (size) { + case -2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + } + CYTHON_FALLTHROUGH; + case 2: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + } + CYTHON_FALLTHROUGH; + case -3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + } + CYTHON_FALLTHROUGH; + case 3: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + } + CYTHON_FALLTHROUGH; + case -4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + } + CYTHON_FALLTHROUGH; + case 4: + if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])); + break; + } + CYTHON_FALLTHROUGH; + #if PyLong_SHIFT < 30 && PyLong_SHIFT != 15 + default: return PyLong_Type.tp_richcompare(op1, op2, Py_EQ); + #else + default: Py_RETURN_FALSE; + #endif + } + } + if (a == b) { + Py_RETURN_TRUE; + } else { + Py_RETURN_FALSE; + } + } + #endif + if (PyFloat_CheckExact(op1)) { + const long b = intval; + double a = PyFloat_AS_DOUBLE(op1); + if ((double)a == (double)b) { + Py_RETURN_TRUE; + } else { + Py_RETURN_FALSE; + } + } + return PyObject_RichCompare(op1, op2, Py_EQ); } +#endif -static CYTHON_INLINE int __Pyx_SetItemInt_Generic(PyObject *o, PyObject *j, PyObject *v) { - int r; - if (!j) return -1; - r = PyObject_SetItem(o, j, v); - Py_DECREF(j); - return r; +/* BufferIndexError */ + static void __Pyx_RaiseBufferIndexError(int axis) { + PyErr_Format(PyExc_IndexError, + "Out of bounds on buffer access (axis %d)", axis); } -static CYTHON_INLINE int __Pyx_SetItemInt_Fast(PyObject *o, Py_ssize_t i, PyObject *v, - int is_list, int wraparound, int boundscheck) { -#if CYTHON_COMPILING_IN_CPYTHON - if (is_list || PyList_CheckExact(o)) { - Py_ssize_t n = (!wraparound) ? i : ((likely(i >= 0)) ? i : i + PyList_GET_SIZE(o)); - if ((!boundscheck) || likely((n >= 0) & (n < PyList_GET_SIZE(o)))) { - PyObject* old = PyList_GET_ITEM(o, n); - Py_INCREF(v); - PyList_SET_ITEM(o, n, v); - Py_DECREF(old); - return 1; + +/* MemviewSliceInit */ + static int +__Pyx_init_memviewslice(struct __pyx_memoryview_obj *memview, + int ndim, + __Pyx_memviewslice *memviewslice, + int memview_is_new_reference) +{ + __Pyx_RefNannyDeclarations + int i, retval=-1; + Py_buffer *buf = &memview->view; + __Pyx_RefNannySetupContext("init_memviewslice", 0); + if (!buf) { + PyErr_SetString(PyExc_ValueError, + "buf is NULL."); + goto fail; + } else if (memviewslice->memview || memviewslice->data) { + PyErr_SetString(PyExc_ValueError, + "memviewslice is already initialized!"); + goto fail; + } + if (buf->strides) { + for (i = 0; i < ndim; i++) { + memviewslice->strides[i] = buf->strides[i]; } } else { - PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence; - if (likely(m && m->sq_ass_item)) { - if (wraparound && unlikely(i < 0) && likely(m->sq_length)) { - Py_ssize_t l = m->sq_length(o); - if (likely(l >= 0)) { - i += l; - } else { - if (PyErr_ExceptionMatches(PyExc_OverflowError)) - PyErr_Clear(); - else - return -1; - } - } - return m->sq_ass_item(o, i, v); + Py_ssize_t stride = buf->itemsize; + for (i = ndim - 1; i >= 0; i--) { + memviewslice->strides[i] = stride; + stride *= buf->shape[i]; } } + for (i = 0; i < ndim; i++) { + memviewslice->shape[i] = buf->shape[i]; + if (buf->suboffsets) { + memviewslice->suboffsets[i] = buf->suboffsets[i]; + } else { + memviewslice->suboffsets[i] = -1; + } + } + memviewslice->memview = memview; + memviewslice->data = (char *)buf->buf; + if (__pyx_add_acquisition_count(memview) == 0 && !memview_is_new_reference) { + Py_INCREF(memview); + } + retval = 0; + goto no_fail; +fail: + memviewslice->memview = 0; + memviewslice->data = 0; + retval = -1; +no_fail: + __Pyx_RefNannyFinishContext(); + return retval; +} +#ifndef Py_NO_RETURN +#define Py_NO_RETURN +#endif +static void __pyx_fatalerror(const char *fmt, ...) Py_NO_RETURN { + va_list vargs; + char msg[200]; +#ifdef HAVE_STDARG_PROTOTYPES + va_start(vargs, fmt); #else -#if CYTHON_COMPILING_IN_PYPY - if (is_list || (PySequence_Check(o) && !PyDict_Check(o))) { -#else - if (is_list || PySequence_Check(o)) { + va_start(vargs); #endif - return PySequence_SetItem(o, i, v); + vsnprintf(msg, 200, fmt, vargs); + va_end(vargs); + Py_FatalError(msg); +} +static CYTHON_INLINE int +__pyx_add_acquisition_count_locked(__pyx_atomic_int *acquisition_count, + PyThread_type_lock lock) +{ + int result; + PyThread_acquire_lock(lock, 1); + result = (*acquisition_count)++; + PyThread_release_lock(lock); + return result; +} +static CYTHON_INLINE int +__pyx_sub_acquisition_count_locked(__pyx_atomic_int *acquisition_count, + PyThread_type_lock lock) +{ + int result; + PyThread_acquire_lock(lock, 1); + result = (*acquisition_count)--; + PyThread_release_lock(lock); + return result; +} +static CYTHON_INLINE void +__Pyx_INC_MEMVIEW(__Pyx_memviewslice *memslice, int have_gil, int lineno) +{ + int first_time; + struct __pyx_memoryview_obj *memview = memslice->memview; + if (!memview || (PyObject *) memview == Py_None) + return; + if (__pyx_get_slice_count(memview) < 0) + __pyx_fatalerror("Acquisition count is %d (line %d)", + __pyx_get_slice_count(memview), lineno); + first_time = __pyx_add_acquisition_count(memview) == 0; + if (first_time) { + if (have_gil) { + Py_INCREF((PyObject *) memview); + } else { + PyGILState_STATE _gilstate = PyGILState_Ensure(); + Py_INCREF((PyObject *) memview); + PyGILState_Release(_gilstate); + } + } +} +static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *memslice, + int have_gil, int lineno) { + int last_time; + struct __pyx_memoryview_obj *memview = memslice->memview; + if (!memview ) { + return; + } else if ((PyObject *) memview == Py_None) { + memslice->memview = NULL; + return; + } + if (__pyx_get_slice_count(memview) <= 0) + __pyx_fatalerror("Acquisition count is %d (line %d)", + __pyx_get_slice_count(memview), lineno); + last_time = __pyx_sub_acquisition_count(memview) == 1; + memslice->data = NULL; + if (last_time) { + if (have_gil) { + Py_CLEAR(memslice->memview); + } else { + PyGILState_STATE _gilstate = PyGILState_Ensure(); + Py_CLEAR(memslice->memview); + PyGILState_Release(_gilstate); + } + } else { + memslice->memview = NULL; } -#endif - return __Pyx_SetItemInt_Generic(o, PyInt_FromSsize_t(i), v); } -static CYTHON_INLINE PyObject* __Pyx_decode_c_string( +/* decode_c_string */ + static CYTHON_INLINE PyObject* __Pyx_decode_c_string( const char* cstring, Py_ssize_t start, Py_ssize_t stop, const char* encoding, const char* errors, PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)) { Py_ssize_t length; if (unlikely((start < 0) | (stop < 0))) { - length = strlen(cstring); + size_t slen = strlen(cstring); + if (unlikely(slen > (size_t) PY_SSIZE_T_MAX)) { + PyErr_SetString(PyExc_OverflowError, + "c-string too long to convert to Python"); + return NULL; + } + length = (Py_ssize_t) slen; if (start < 0) { start += length; if (start < 0) @@ -19792,11 +35360,512 @@ static CYTHON_INLINE PyObject* __Pyx_decode_c_string( } } -static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { +/* ArgTypeTest */ + static int __Pyx__ArgTypeTest(PyObject *obj, PyTypeObject *type, const char *name, int exact) +{ + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + else if (exact) { + #if PY_MAJOR_VERSION == 2 + if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1; + #endif + } + else { + if (likely(__Pyx_TypeCheck(obj, type))) return 1; + } + PyErr_Format(PyExc_TypeError, + "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)", + name, type->tp_name, Py_TYPE(obj)->tp_name); + return 0; +} + +/* BytesEquals */ + static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) { +#if CYTHON_COMPILING_IN_PYPY + return PyObject_RichCompareBool(s1, s2, equals); +#else + if (s1 == s2) { + return (equals == Py_EQ); + } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) { + const char *ps1, *ps2; + Py_ssize_t length = PyBytes_GET_SIZE(s1); + if (length != PyBytes_GET_SIZE(s2)) + return (equals == Py_NE); + ps1 = PyBytes_AS_STRING(s1); + ps2 = PyBytes_AS_STRING(s2); + if (ps1[0] != ps2[0]) { + return (equals == Py_NE); + } else if (length == 1) { + return (equals == Py_EQ); + } else { + int result; +#if CYTHON_USE_UNICODE_INTERNALS + Py_hash_t hash1, hash2; + hash1 = ((PyBytesObject*)s1)->ob_shash; + hash2 = ((PyBytesObject*)s2)->ob_shash; + if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { + return (equals == Py_NE); + } +#endif + result = memcmp(ps1, ps2, (size_t)length); + return (equals == Py_EQ) ? (result == 0) : (result != 0); + } + } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) { + return (equals == Py_NE); + } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) { + return (equals == Py_NE); + } else { + int result; + PyObject* py_result = PyObject_RichCompare(s1, s2, equals); + if (!py_result) + return -1; + result = __Pyx_PyObject_IsTrue(py_result); + Py_DECREF(py_result); + return result; + } +#endif +} + +/* UnicodeEquals */ + static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) { +#if CYTHON_COMPILING_IN_PYPY + return PyObject_RichCompareBool(s1, s2, equals); +#else +#if PY_MAJOR_VERSION < 3 + PyObject* owned_ref = NULL; +#endif + int s1_is_unicode, s2_is_unicode; + if (s1 == s2) { + goto return_eq; + } + s1_is_unicode = PyUnicode_CheckExact(s1); + s2_is_unicode = PyUnicode_CheckExact(s2); +#if PY_MAJOR_VERSION < 3 + if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) { + owned_ref = PyUnicode_FromObject(s2); + if (unlikely(!owned_ref)) + return -1; + s2 = owned_ref; + s2_is_unicode = 1; + } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) { + owned_ref = PyUnicode_FromObject(s1); + if (unlikely(!owned_ref)) + return -1; + s1 = owned_ref; + s1_is_unicode = 1; + } else if (((!s2_is_unicode) & (!s1_is_unicode))) { + return __Pyx_PyBytes_Equals(s1, s2, equals); + } +#endif + if (s1_is_unicode & s2_is_unicode) { + Py_ssize_t length; + int kind; + void *data1, *data2; + if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0)) + return -1; + length = __Pyx_PyUnicode_GET_LENGTH(s1); + if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) { + goto return_ne; + } +#if CYTHON_USE_UNICODE_INTERNALS + { + Py_hash_t hash1, hash2; + #if CYTHON_PEP393_ENABLED + hash1 = ((PyASCIIObject*)s1)->hash; + hash2 = ((PyASCIIObject*)s2)->hash; + #else + hash1 = ((PyUnicodeObject*)s1)->hash; + hash2 = ((PyUnicodeObject*)s2)->hash; + #endif + if (hash1 != hash2 && hash1 != -1 && hash2 != -1) { + goto return_ne; + } + } +#endif + kind = __Pyx_PyUnicode_KIND(s1); + if (kind != __Pyx_PyUnicode_KIND(s2)) { + goto return_ne; + } + data1 = __Pyx_PyUnicode_DATA(s1); + data2 = __Pyx_PyUnicode_DATA(s2); + if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) { + goto return_ne; + } else if (length == 1) { + goto return_eq; + } else { + int result = memcmp(data1, data2, (size_t)(length * kind)); + #if PY_MAJOR_VERSION < 3 + Py_XDECREF(owned_ref); + #endif + return (equals == Py_EQ) ? (result == 0) : (result != 0); + } + } else if ((s1 == Py_None) & s2_is_unicode) { + goto return_ne; + } else if ((s2 == Py_None) & s1_is_unicode) { + goto return_ne; + } else { + int result; + PyObject* py_result = PyObject_RichCompare(s1, s2, equals); + if (!py_result) + return -1; + result = __Pyx_PyObject_IsTrue(py_result); + Py_DECREF(py_result); + return result; + } +return_eq: + #if PY_MAJOR_VERSION < 3 + Py_XDECREF(owned_ref); + #endif + return (equals == Py_EQ); +return_ne: + #if PY_MAJOR_VERSION < 3 + Py_XDECREF(owned_ref); + #endif + return (equals == Py_NE); +#endif +} + +/* None */ + static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t a, Py_ssize_t b) { + Py_ssize_t q = a / b; + Py_ssize_t r = a - q*b; + q -= ((r != 0) & ((r ^ b) < 0)); + return q; +} + +/* GetAttr */ + static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *o, PyObject *n) { +#if CYTHON_USE_TYPE_SLOTS +#if PY_MAJOR_VERSION >= 3 + if (likely(PyUnicode_Check(n))) +#else + if (likely(PyString_Check(n))) +#endif + return __Pyx_PyObject_GetAttrStr(o, n); +#endif + return PyObject_GetAttr(o, n); +} + +/* GetAttr3 */ + static PyObject *__Pyx_GetAttr3Default(PyObject *d) { + __Pyx_PyThreadState_declare + __Pyx_PyThreadState_assign + if (unlikely(!__Pyx_PyErr_ExceptionMatches(PyExc_AttributeError))) + return NULL; + __Pyx_PyErr_Clear(); + Py_INCREF(d); + return d; +} +static CYTHON_INLINE PyObject *__Pyx_GetAttr3(PyObject *o, PyObject *n, PyObject *d) { + PyObject *r = __Pyx_GetAttr(o, n); + return (likely(r)) ? r : __Pyx_GetAttr3Default(d); +} + +/* RaiseNoneIterError */ + static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) { PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable"); } -static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases) { +/* ExtTypeTest */ + static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) { + if (unlikely(!type)) { + PyErr_SetString(PyExc_SystemError, "Missing type object"); + return 0; + } + if (likely(__Pyx_TypeCheck(obj, type))) + return 1; + PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s", + Py_TYPE(obj)->tp_name, type->tp_name); + return 0; +} + +/* SwapException */ + #if CYTHON_FAST_THREAD_STATE +static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + #if PY_VERSION_HEX >= 0x030700A2 + tmp_type = tstate->exc_state.exc_type; + tmp_value = tstate->exc_state.exc_value; + tmp_tb = tstate->exc_state.exc_traceback; + tstate->exc_state.exc_type = *type; + tstate->exc_state.exc_value = *value; + tstate->exc_state.exc_traceback = *tb; + #else + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = *type; + tstate->exc_value = *value; + tstate->exc_traceback = *tb; + #endif + *type = tmp_type; + *value = tmp_value; + *tb = tmp_tb; +} +#else +static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb); + PyErr_SetExcInfo(*type, *value, *tb); + *type = tmp_type; + *value = tmp_value; + *tb = tmp_tb; +} +#endif + +/* Import */ + static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { + PyObject *empty_list = 0; + PyObject *module = 0; + PyObject *global_dict = 0; + PyObject *empty_dict = 0; + PyObject *list; + #if PY_MAJOR_VERSION < 3 + PyObject *py_import; + py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); + if (!py_import) + goto bad; + #endif + if (from_list) + list = from_list; + else { + empty_list = PyList_New(0); + if (!empty_list) + goto bad; + list = empty_list; + } + global_dict = PyModule_GetDict(__pyx_m); + if (!global_dict) + goto bad; + empty_dict = PyDict_New(); + if (!empty_dict) + goto bad; + { + #if PY_MAJOR_VERSION >= 3 + if (level == -1) { + if (strchr(__Pyx_MODULE_NAME, '.')) { + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, 1); + if (!module) { + if (!PyErr_ExceptionMatches(PyExc_ImportError)) + goto bad; + PyErr_Clear(); + } + } + level = 0; + } + #endif + if (!module) { + #if PY_MAJOR_VERSION < 3 + PyObject *py_level = PyInt_FromLong(level); + if (!py_level) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, py_level, NULL); + Py_DECREF(py_level); + #else + module = PyImport_ImportModuleLevelObject( + name, global_dict, empty_dict, list, level); + #endif + } + } +bad: + #if PY_MAJOR_VERSION < 3 + Py_XDECREF(py_import); + #endif + Py_XDECREF(empty_list); + Py_XDECREF(empty_dict); + return module; +} + +/* None */ + static CYTHON_INLINE long __Pyx_div_long(long a, long b) { + long q = a / b; + long r = a - q*b; + q -= ((r != 0) & ((r ^ b) < 0)); + return q; +} + +/* ImportFrom */ + static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) { + PyObject* value = __Pyx_PyObject_GetAttrStr(module, name); + if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) { + PyErr_Format(PyExc_ImportError, + #if PY_MAJOR_VERSION < 3 + "cannot import name %.230s", PyString_AS_STRING(name)); + #else + "cannot import name %S", name); + #endif + } + return value; +} + +/* HasAttr */ + static CYTHON_INLINE int __Pyx_HasAttr(PyObject *o, PyObject *n) { + PyObject *r; + if (unlikely(!__Pyx_PyBaseString_Check(n))) { + PyErr_SetString(PyExc_TypeError, + "hasattr(): attribute name must be string"); + return -1; + } + r = __Pyx_GetAttr(o, n); + if (unlikely(!r)) { + PyErr_Clear(); + return 0; + } else { + Py_DECREF(r); + return 1; + } +} + +/* PyObject_GenericGetAttrNoDict */ + #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 +static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) { + PyErr_Format(PyExc_AttributeError, +#if PY_MAJOR_VERSION >= 3 + "'%.50s' object has no attribute '%U'", + tp->tp_name, attr_name); +#else + "'%.50s' object has no attribute '%.400s'", + tp->tp_name, PyString_AS_STRING(attr_name)); +#endif + return NULL; +} +static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) { + PyObject *descr; + PyTypeObject *tp = Py_TYPE(obj); + if (unlikely(!PyString_Check(attr_name))) { + return PyObject_GenericGetAttr(obj, attr_name); + } + assert(!tp->tp_dictoffset); + descr = _PyType_Lookup(tp, attr_name); + if (unlikely(!descr)) { + return __Pyx_RaiseGenericGetAttributeError(tp, attr_name); + } + Py_INCREF(descr); + #if PY_MAJOR_VERSION < 3 + if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS))) + #endif + { + descrgetfunc f = Py_TYPE(descr)->tp_descr_get; + if (unlikely(f)) { + PyObject *res = f(descr, obj, (PyObject *)tp); + Py_DECREF(descr); + return res; + } + } + return descr; +} +#endif + +/* PyObject_GenericGetAttr */ + #if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000 +static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) { + if (unlikely(Py_TYPE(obj)->tp_dictoffset)) { + return PyObject_GenericGetAttr(obj, attr_name); + } + return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name); +} +#endif + +/* SetupReduce */ + static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) { + int ret; + PyObject *name_attr; + name_attr = __Pyx_PyObject_GetAttrStr(meth, __pyx_n_s_name_2); + if (likely(name_attr)) { + ret = PyObject_RichCompareBool(name_attr, name, Py_EQ); + } else { + ret = -1; + } + if (unlikely(ret < 0)) { + PyErr_Clear(); + ret = 0; + } + Py_XDECREF(name_attr); + return ret; +} +static int __Pyx_setup_reduce(PyObject* type_obj) { + int ret = 0; + PyObject *object_reduce = NULL; + PyObject *object_reduce_ex = NULL; + PyObject *reduce = NULL; + PyObject *reduce_ex = NULL; + PyObject *reduce_cython = NULL; + PyObject *setstate = NULL; + PyObject *setstate_cython = NULL; +#if CYTHON_USE_PYTYPE_LOOKUP + if (_PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate)) goto GOOD; +#else + if (PyObject_HasAttr(type_obj, __pyx_n_s_getstate)) goto GOOD; +#endif +#if CYTHON_USE_PYTYPE_LOOKUP + object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto BAD; +#else + object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto BAD; +#endif + reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto BAD; + if (reduce_ex == object_reduce_ex) { +#if CYTHON_USE_PYTYPE_LOOKUP + object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto BAD; +#else + object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto BAD; +#endif + reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto BAD; + if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) { + reduce_cython = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_cython); if (unlikely(!reduce_cython)) goto BAD; + ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto BAD; + ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto BAD; + setstate = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate); + if (!setstate) PyErr_Clear(); + if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) { + setstate_cython = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate_cython); if (unlikely(!setstate_cython)) goto BAD; + ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto BAD; + ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto BAD; + } + PyType_Modified((PyTypeObject*)type_obj); + } + } + goto GOOD; +BAD: + if (!PyErr_Occurred()) + PyErr_Format(PyExc_RuntimeError, "Unable to initialize pickling for %s", ((PyTypeObject*)type_obj)->tp_name); + ret = -1; +GOOD: +#if !CYTHON_USE_PYTYPE_LOOKUP + Py_XDECREF(object_reduce); + Py_XDECREF(object_reduce_ex); +#endif + Py_XDECREF(reduce); + Py_XDECREF(reduce_ex); + Py_XDECREF(reduce_cython); + Py_XDECREF(setstate); + Py_XDECREF(setstate_cython); + return ret; +} + +/* SetVTable */ + static int __Pyx_SetVtable(PyObject *dict, void *vtable) { +#if PY_VERSION_HEX >= 0x02070000 + PyObject *ob = PyCapsule_New(vtable, 0, 0); +#else + PyObject *ob = PyCObject_FromVoidPtr(vtable, 0); +#endif + if (!ob) + goto bad; + if (PyDict_SetItem(dict, __pyx_n_s_pyx_vtable, ob) < 0) + goto bad; + Py_DECREF(ob); + return 0; +bad: + Py_XDECREF(ob); + return -1; +} + +/* CalculateMetaclass */ + static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases) { Py_ssize_t i, nbases = PyTuple_GET_SIZE(bases); for (i=0; i < nbases; i++) { PyTypeObject *tmptype; @@ -19834,7 +35903,8 @@ static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bas return (PyObject*) metaclass; } -static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name, +/* Py3ClassCreate */ + static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name, PyObject *qualname, PyObject *mkw, PyObject *modname, PyObject *doc) { PyObject *ns; if (metaclass) { @@ -19900,7 +35970,8 @@ static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObj return result; } -static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) { +/* FetchCommonType */ + static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) { PyObject* fake_module; PyTypeObject* cached_type = NULL; fake_module = PyImport_AddModule((char*) "_cython_" CYTHON_ABI); @@ -19938,6 +36009,8 @@ bad: goto done; } +/* CythonFunction */ + #include <structmember.h> static PyObject * __Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure) { @@ -20091,15 +36164,25 @@ __Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op) } static int __Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) { + int result = 0; PyObject *res = op->defaults_getter((PyObject *) op); if (unlikely(!res)) return -1; + #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS op->defaults_tuple = PyTuple_GET_ITEM(res, 0); Py_INCREF(op->defaults_tuple); op->defaults_kwdict = PyTuple_GET_ITEM(res, 1); Py_INCREF(op->defaults_kwdict); + #else + op->defaults_tuple = PySequence_ITEM(res, 0); + if (unlikely(!op->defaults_tuple)) result = -1; + else { + op->defaults_kwdict = PySequence_ITEM(res, 1); + if (unlikely(!op->defaults_kwdict)) result = -1; + } + #endif Py_DECREF(res); - return 0; + return result; } static int __Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value) { @@ -20209,11 +36292,8 @@ static PyGetSetDef __pyx_CyFunction_getsets[] = { {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0}, {0, 0, 0, 0, 0} }; -#ifndef PY_WRITE_RESTRICTED -#define PY_WRITE_RESTRICTED WRITE_RESTRICTED -#endif static PyMemberDef __pyx_CyFunction_members[] = { - {(char *) "__module__", T_OBJECT, offsetof(__pyx_CyFunctionObject, func.m_module), PY_WRITE_RESTRICTED, 0}, + {(char *) "__module__", T_OBJECT, offsetof(PyCFunctionObject, m_module), PY_WRITE_RESTRICTED, 0}, {0, 0, 0, 0, 0} }; static PyObject * @@ -20286,19 +36366,23 @@ __Pyx_CyFunction_clear(__pyx_CyFunctionObject *m) int i; for (i = 0; i < m->defaults_pyobjects; i++) Py_XDECREF(pydefaults[i]); - PyMem_Free(m->defaults); + PyObject_Free(m->defaults); m->defaults = NULL; } return 0; } -static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) +static void __Pyx__CyFunction_dealloc(__pyx_CyFunctionObject *m) { - PyObject_GC_UnTrack(m); if (__Pyx_CyFunction_weakreflist(m) != NULL) PyObject_ClearWeakRefs((PyObject *) m); __Pyx_CyFunction_clear(m); PyObject_GC_Del(m); } +static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m) +{ + PyObject_GC_UnTrack(m); + __Pyx__CyFunction_dealloc(m); +} static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg) { Py_VISIT(m->func_closure); @@ -20347,37 +36431,46 @@ __Pyx_CyFunction_repr(__pyx_CyFunctionObject *op) PyString_AsString(op->func_qualname), (void *)op); #endif } -#if CYTHON_COMPILING_IN_PYPY -static PyObject * __Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { +static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) { PyCFunctionObject* f = (PyCFunctionObject*)func; - PyCFunction meth = PyCFunction_GET_FUNCTION(func); - PyObject *self = PyCFunction_GET_SELF(func); + PyCFunction meth = f->m_ml->ml_meth; Py_ssize_t size; - switch (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST)) { + switch (f->m_ml->ml_flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) { case METH_VARARGS: - if (likely(kw == NULL) || PyDict_Size(kw) == 0) + if (likely(kw == NULL || PyDict_Size(kw) == 0)) return (*meth)(self, arg); break; case METH_VARARGS | METH_KEYWORDS: return (*(PyCFunctionWithKeywords)meth)(self, arg, kw); case METH_NOARGS: - if (likely(kw == NULL) || PyDict_Size(kw) == 0) { + if (likely(kw == NULL || PyDict_Size(kw) == 0)) { size = PyTuple_GET_SIZE(arg); - if (size == 0) + if (likely(size == 0)) return (*meth)(self, NULL); PyErr_Format(PyExc_TypeError, - "%.200s() takes no arguments (%zd given)", + "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)", f->m_ml->ml_name, size); return NULL; } break; case METH_O: - if (likely(kw == NULL) || PyDict_Size(kw) == 0) { + if (likely(kw == NULL || PyDict_Size(kw) == 0)) { size = PyTuple_GET_SIZE(arg); - if (size == 1) - return (*meth)(self, PyTuple_GET_ITEM(arg, 0)); + if (likely(size == 1)) { + PyObject *result, *arg0; + #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + arg0 = PyTuple_GET_ITEM(arg, 0); + #else + arg0 = PySequence_ITEM(arg, 0); if (unlikely(!arg0)) return NULL; + #endif + result = (*meth)(self, arg0); + #if !(CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS) + Py_DECREF(arg0); + #endif + return result; + } PyErr_Format(PyExc_TypeError, - "%.200s() takes exactly one argument (%zd given)", + "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)", f->m_ml->ml_name, size); return NULL; } @@ -20392,11 +36485,32 @@ static PyObject * __Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject f->m_ml->ml_name); return NULL; } -#else -static PyObject * __Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { - return PyCFunction_Call(func, arg, kw); +static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) { + return __Pyx_CyFunction_CallMethod(func, ((PyCFunctionObject*)func)->m_self, arg, kw); +} +static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) { + PyObject *result; + __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func; + if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) { + Py_ssize_t argc; + PyObject *new_args; + PyObject *self; + argc = PyTuple_GET_SIZE(args); + new_args = PyTuple_GetSlice(args, 1, argc); + if (unlikely(!new_args)) + return NULL; + self = PyTuple_GetItem(args, 0); + if (unlikely(!self)) { + Py_DECREF(new_args); + return NULL; + } + result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw); + Py_DECREF(new_args); + } else { + result = __Pyx_CyFunction_Call(func, args, kw); + } + return result; } -#endif static PyTypeObject __pyx_CyFunctionType_type = { PyVarObject_HEAD_INIT(0, 0) "cython_function_or_method", @@ -20416,7 +36530,7 @@ static PyTypeObject __pyx_CyFunctionType_type = { 0, 0, 0, - __Pyx_CyFunction_Call, + __Pyx_CyFunction_CallAsMethod, 0, 0, 0, @@ -20457,20 +36571,17 @@ static PyTypeObject __pyx_CyFunctionType_type = { 0, #endif }; -static int __Pyx_CyFunction_init(void) { -#if !CYTHON_COMPILING_IN_PYPY - __pyx_CyFunctionType_type.tp_call = PyCFunction_Call; -#endif +static int __pyx_CyFunction_init(void) { __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type); - if (__pyx_CyFunctionType == NULL) { + if (unlikely(__pyx_CyFunctionType == NULL)) { return -1; } return 0; } static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) { __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func; - m->defaults = PyMem_Malloc(size); - if (!m->defaults) + m->defaults = PyObject_Malloc(size); + if (unlikely(!m->defaults)) return PyErr_NoMemory(); memset(m->defaults, 0, size); m->defaults_pyobjects = pyobjects; @@ -20492,13 +36603,54 @@ static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, Py Py_INCREF(dict); } -static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { +/* CLineInTraceback */ + #ifndef CYTHON_CLINE_IN_TRACEBACK +static int __Pyx_CLineForTraceback(CYTHON_UNUSED PyThreadState *tstate, int c_line) { + PyObject *use_cline; + PyObject *ptype, *pvalue, *ptraceback; +#if CYTHON_COMPILING_IN_CPYTHON + PyObject **cython_runtime_dict; +#endif + if (unlikely(!__pyx_cython_runtime)) { + return c_line; + } + __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback); +#if CYTHON_COMPILING_IN_CPYTHON + cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime); + if (likely(cython_runtime_dict)) { + use_cline = __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback); + } else +#endif + { + PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback); + if (use_cline_obj) { + use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True; + Py_DECREF(use_cline_obj); + } else { + PyErr_Clear(); + use_cline = NULL; + } + } + if (!use_cline) { + c_line = 0; + PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False); + } + else if (PyObject_Not(use_cline) != 0) { + c_line = 0; + } + __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback); + return c_line; +} +#endif + +/* CodeObjectCache */ + static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) { int start = 0, mid = 0, end = count - 1; if (end >= 0 && code_line > entries[end].code_line) { return count; } while (start < end) { - mid = (start + end) / 2; + mid = start + (end - start) / 2; if (code_line < entries[mid].code_line) { end = mid; } else if (code_line > entries[mid].code_line) { @@ -20571,7 +36723,8 @@ static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) { Py_INCREF(code_object); } -#include "compile.h" +/* AddTraceback */ + #include "compile.h" #include "frameobject.h" #include "traceback.h" static PyCodeObject* __Pyx_CreateCodeObjectForTraceback( @@ -20630,116 +36783,145 @@ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename) { PyCodeObject *py_code = 0; PyFrameObject *py_frame = 0; - py_code = __pyx_find_code_object(c_line ? c_line : py_line); + PyThreadState *tstate = __Pyx_PyThreadState_Current; + if (c_line) { + c_line = __Pyx_CLineForTraceback(tstate, c_line); + } + py_code = __pyx_find_code_object(c_line ? -c_line : py_line); if (!py_code) { py_code = __Pyx_CreateCodeObjectForTraceback( funcname, c_line, py_line, filename); if (!py_code) goto bad; - __pyx_insert_code_object(c_line ? c_line : py_line, py_code); + __pyx_insert_code_object(c_line ? -c_line : py_line, py_code); } py_frame = PyFrame_New( - PyThreadState_GET(), /*PyThreadState *tstate,*/ - py_code, /*PyCodeObject *code,*/ - __pyx_d, /*PyObject *globals,*/ - 0 /*PyObject *locals*/ + tstate, /*PyThreadState *tstate,*/ + py_code, /*PyCodeObject *code,*/ + __pyx_d, /*PyObject *globals,*/ + 0 /*PyObject *locals*/ ); if (!py_frame) goto bad; - py_frame->f_lineno = py_line; + __Pyx_PyFrame_SetLineNumber(py_frame, py_line); PyTraceBack_Here(py_frame); bad: Py_XDECREF(py_code); Py_XDECREF(py_frame); } -static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) { - PyObject *empty_list = 0; - PyObject *module = 0; - PyObject *global_dict = 0; - PyObject *empty_dict = 0; - PyObject *list; - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_import; - py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import); - if (!py_import) - goto bad; - #endif - if (from_list) - list = from_list; - else { - empty_list = PyList_New(0); - if (!empty_list) - goto bad; - list = empty_list; +#if PY_MAJOR_VERSION < 3 +static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags) { + if (PyObject_CheckBuffer(obj)) return PyObject_GetBuffer(obj, view, flags); + if (__Pyx_TypeCheck(obj, __pyx_array_type)) return __pyx_array_getbuffer(obj, view, flags); + if (__Pyx_TypeCheck(obj, __pyx_memoryview_type)) return __pyx_memoryview_getbuffer(obj, view, flags); + PyErr_Format(PyExc_TypeError, "'%.200s' does not have the buffer interface", Py_TYPE(obj)->tp_name); + return -1; +} +static void __Pyx_ReleaseBuffer(Py_buffer *view) { + PyObject *obj = view->obj; + if (!obj) return; + if (PyObject_CheckBuffer(obj)) { + PyBuffer_Release(view); + return; } - global_dict = PyModule_GetDict(__pyx_m); - if (!global_dict) - goto bad; - empty_dict = PyDict_New(); - if (!empty_dict) - goto bad; - { - #if PY_MAJOR_VERSION >= 3 - if (level == -1) { - if (strchr(__Pyx_MODULE_NAME, '.')) { - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_level = PyInt_FromLong(1); - if (!py_level) - goto bad; - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, NULL); - Py_DECREF(py_level); - #else - module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, 1); - #endif - if (!module) { - if (!PyErr_ExceptionMatches(PyExc_ImportError)) - goto bad; - PyErr_Clear(); - } - } - level = 0; - } - #endif - if (!module) { - #if PY_VERSION_HEX < 0x03030000 - PyObject *py_level = PyInt_FromLong(level); - if (!py_level) - goto bad; - module = PyObject_CallFunctionObjArgs(py_import, - name, global_dict, empty_dict, list, py_level, NULL); - Py_DECREF(py_level); - #else - module = PyImport_ImportModuleLevelObject( - name, global_dict, empty_dict, list, level); - #endif + if ((0)) {} + view->obj = NULL; + Py_DECREF(obj); +} +#endif + + + /* MemviewSliceIsContig */ + static int +__pyx_memviewslice_is_contig(const __Pyx_memviewslice mvs, char order, int ndim) +{ + int i, index, step, start; + Py_ssize_t itemsize = mvs.memview->view.itemsize; + if (order == 'F') { + step = 1; + start = 0; + } else { + step = -1; + start = ndim - 1; + } + for (i = 0; i < ndim; i++) { + index = start + step * i; + if (mvs.suboffsets[index] >= 0 || mvs.strides[index] != itemsize) + return 0; + itemsize *= mvs.shape[index]; + } + return 1; +} + +/* OverlappingSlices */ + static void +__pyx_get_array_memory_extents(__Pyx_memviewslice *slice, + void **out_start, void **out_end, + int ndim, size_t itemsize) +{ + char *start, *end; + int i; + start = end = slice->data; + for (i = 0; i < ndim; i++) { + Py_ssize_t stride = slice->strides[i]; + Py_ssize_t extent = slice->shape[i]; + if (extent == 0) { + *out_start = *out_end = start; + return; + } else { + if (stride > 0) + end += stride * (extent - 1); + else + start += stride * (extent - 1); } } -bad: - #if PY_VERSION_HEX < 0x03030000 - Py_XDECREF(py_import); - #endif - Py_XDECREF(empty_list); - Py_XDECREF(empty_dict); - return module; + *out_start = start; + *out_end = end + itemsize; +} +static int +__pyx_slices_overlap(__Pyx_memviewslice *slice1, + __Pyx_memviewslice *slice2, + int ndim, size_t itemsize) +{ + void *start1, *end1, *start2, *end2; + __pyx_get_array_memory_extents(slice1, &start1, &end1, ndim, itemsize); + __pyx_get_array_memory_extents(slice2, &start2, &end2, ndim, itemsize); + return (start1 < end2) && (start2 < end1); } -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { - const long neg_one = (long) -1, const_zero = 0; +/* Capsule */ + static CYTHON_INLINE PyObject * +__pyx_capsule_create(void *p, CYTHON_UNUSED const char *sig) +{ + PyObject *cobj; +#if PY_VERSION_HEX >= 0x02070000 + cobj = PyCapsule_New(p, sig, NULL); +#else + cobj = PyCObject_FromVoidPtr(p, NULL); +#endif + return cobj; +} + +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { + const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; if (is_unsigned) { if (sizeof(long) < sizeof(long)) { return PyInt_FromLong((long) value); } else if (sizeof(long) <= sizeof(unsigned long)) { return PyLong_FromUnsignedLong((unsigned long) value); - } else if (sizeof(long) <= sizeof(unsigned long long)) { - return PyLong_FromUnsignedLongLong((unsigned long long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif } } else { if (sizeof(long) <= sizeof(long)) { return PyInt_FromLong((long) value); - } else if (sizeof(long) <= sizeof(long long)) { - return PyLong_FromLongLong((long long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif } } { @@ -20750,29 +36932,141 @@ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) { } } -#define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value) \ - { \ - func_type value = func_value; \ - if (sizeof(target_type) < sizeof(func_type)) { \ - if (unlikely(value != (func_type) (target_type) value)) { \ - func_type zero = 0; \ - if (is_unsigned && unlikely(value < zero)) \ - goto raise_neg_overflow; \ - else \ - goto raise_overflow; \ - } \ - } \ - return (target_type) value; \ +/* CIntToPy */ + static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { + const int neg_one = (int) -1, const_zero = (int) 0; + const int is_unsigned = neg_one > const_zero; + if (is_unsigned) { + if (sizeof(int) < sizeof(long)) { + return PyInt_FromLong((long) value); + } else if (sizeof(int) <= sizeof(unsigned long)) { + return PyLong_FromUnsignedLong((unsigned long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value); +#endif + } + } else { + if (sizeof(int) <= sizeof(long)) { + return PyInt_FromLong((long) value); +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + return PyLong_FromLongLong((PY_LONG_LONG) value); +#endif + } + } + { + int one = 1; int little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&value; + return _PyLong_FromByteArray(bytes, sizeof(int), + little, !is_unsigned); } +} -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - #include "longintrepr.h" - #endif -#endif +/* CIntFromPyVerify */ + #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0) +#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\ + __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1) +#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\ + {\ + func_type value = func_value;\ + if (sizeof(target_type) < sizeof(func_type)) {\ + if (unlikely(value != (func_type) (target_type) value)) {\ + func_type zero = 0;\ + if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\ + return (target_type) -1;\ + if (is_unsigned && unlikely(value < zero))\ + goto raise_neg_overflow;\ + else\ + goto raise_overflow;\ + }\ + }\ + return (target_type) value;\ + } + +/* MemviewDtypeToObject */ + static CYTHON_INLINE PyObject *__pyx_memview_get_double(const char *itemp) { + return (PyObject *) PyFloat_FromDouble(*(double *) itemp); +} +static CYTHON_INLINE int __pyx_memview_set_double(const char *itemp, PyObject *obj) { + double value = __pyx_PyFloat_AsDouble(obj); + if ((value == (double)-1) && PyErr_Occurred()) + return 0; + *(double *) itemp = value; + return 1; +} -static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { - const int neg_one = (int) -1, const_zero = 0; +/* MemviewSliceCopyTemplate */ + static __Pyx_memviewslice +__pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs, + const char *mode, int ndim, + size_t sizeof_dtype, int contig_flag, + int dtype_is_object) +{ + __Pyx_RefNannyDeclarations + int i; + __Pyx_memviewslice new_mvs = { 0, 0, { 0 }, { 0 }, { 0 } }; + struct __pyx_memoryview_obj *from_memview = from_mvs->memview; + Py_buffer *buf = &from_memview->view; + PyObject *shape_tuple = NULL; + PyObject *temp_int = NULL; + struct __pyx_array_obj *array_obj = NULL; + struct __pyx_memoryview_obj *memview_obj = NULL; + __Pyx_RefNannySetupContext("__pyx_memoryview_copy_new_contig", 0); + for (i = 0; i < ndim; i++) { + if (from_mvs->suboffsets[i] >= 0) { + PyErr_Format(PyExc_ValueError, "Cannot copy memoryview slice with " + "indirect dimensions (axis %d)", i); + goto fail; + } + } + shape_tuple = PyTuple_New(ndim); + if (unlikely(!shape_tuple)) { + goto fail; + } + __Pyx_GOTREF(shape_tuple); + for(i = 0; i < ndim; i++) { + temp_int = PyInt_FromSsize_t(from_mvs->shape[i]); + if(unlikely(!temp_int)) { + goto fail; + } else { + PyTuple_SET_ITEM(shape_tuple, i, temp_int); + temp_int = NULL; + } + } + array_obj = __pyx_array_new(shape_tuple, sizeof_dtype, buf->format, (char *) mode, NULL); + if (unlikely(!array_obj)) { + goto fail; + } + __Pyx_GOTREF(array_obj); + memview_obj = (struct __pyx_memoryview_obj *) __pyx_memoryview_new( + (PyObject *) array_obj, contig_flag, + dtype_is_object, + from_mvs->memview->typeinfo); + if (unlikely(!memview_obj)) + goto fail; + if (unlikely(__Pyx_init_memviewslice(memview_obj, ndim, &new_mvs, 1) < 0)) + goto fail; + if (unlikely(__pyx_memoryview_copy_contents(*from_mvs, new_mvs, ndim, ndim, + dtype_is_object) < 0)) + goto fail; + goto no_fail; +fail: + __Pyx_XDECREF(new_mvs.memview); + new_mvs.memview = NULL; + new_mvs.data = NULL; +no_fail: + __Pyx_XDECREF(shape_tuple); + __Pyx_XDECREF(temp_int); + __Pyx_XDECREF(array_obj); + __Pyx_RefNannyFinishContext(); + return new_mvs; +} + +/* CIntFromPy */ + static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { + const int neg_one = (int) -1, const_zero = (int) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { @@ -20789,36 +37083,129 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; switch (Py_SIZE(x)) { - case 0: return 0; - case 1: __PYX_VERIFY_RETURN_INT(int, digit, ((PyLongObject*)x)->ob_digit[0]); + case 0: return (int) 0; + case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0]) + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) { + return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) { + return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) { + return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])); + } + } + break; } - #endif #endif +#if CYTHON_COMPILING_IN_CPYTHON if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (int) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif if (sizeof(int) <= sizeof(unsigned long)) { - __PYX_VERIFY_RETURN_INT(int, unsigned long, PyLong_AsUnsignedLong(x)) - } else if (sizeof(int) <= sizeof(unsigned long long)) { - __PYX_VERIFY_RETURN_INT(int, unsigned long long, PyLong_AsUnsignedLongLong(x)) + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif } } else { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; switch (Py_SIZE(x)) { - case 0: return 0; - case 1: __PYX_VERIFY_RETURN_INT(int, digit, +(((PyLongObject*)x)->ob_digit[0])); - case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, -(sdigit) ((PyLongObject*)x)->ob_digit[0]); + case 0: return (int) 0; + case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0]) + case -2: + if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(int) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(int) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(int) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) { + return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]))); + } + } + break; } - #endif #endif if (sizeof(int) <= sizeof(long)) { - __PYX_VERIFY_RETURN_INT(int, long, PyLong_AsLong(x)) - } else if (sizeof(int) <= sizeof(long long)) { - __PYX_VERIFY_RETURN_INT(int, long long, PyLong_AsLongLong(x)) + __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif } } { @@ -20827,7 +37214,7 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else int val; - PyObject *v = __Pyx_PyNumber_Int(x); + PyObject *v = __Pyx_PyNumber_IntOrLong(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; @@ -20850,7 +37237,7 @@ static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) { } } else { int val; - PyObject *tmp = __Pyx_PyNumber_Int(x); + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); if (!tmp) return (int) -1; val = __Pyx_PyInt_As_int(tmp); Py_DECREF(tmp); @@ -20866,34 +37253,9 @@ raise_neg_overflow: return (int) -1; } -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) { - const int neg_one = (int) -1, const_zero = 0; - const int is_unsigned = neg_one > const_zero; - if (is_unsigned) { - if (sizeof(int) < sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(int) <= sizeof(unsigned long)) { - return PyLong_FromUnsignedLong((unsigned long) value); - } else if (sizeof(int) <= sizeof(unsigned long long)) { - return PyLong_FromUnsignedLongLong((unsigned long long) value); - } - } else { - if (sizeof(int) <= sizeof(long)) { - return PyInt_FromLong((long) value); - } else if (sizeof(int) <= sizeof(long long)) { - return PyLong_FromLongLong((long long) value); - } - } - { - int one = 1; int little = (int)*(unsigned char *)&one; - unsigned char *bytes = (unsigned char *)&value; - return _PyLong_FromByteArray(bytes, sizeof(int), - little, !is_unsigned); - } -} - -static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { - const long neg_one = (long) -1, const_zero = 0; +/* CIntFromPy */ + static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { + const long neg_one = (long) -1, const_zero = (long) 0; const int is_unsigned = neg_one > const_zero; #if PY_MAJOR_VERSION < 3 if (likely(PyInt_Check(x))) { @@ -20910,36 +37272,129 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { #endif if (likely(PyLong_Check(x))) { if (is_unsigned) { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; switch (Py_SIZE(x)) { - case 0: return 0; - case 1: __PYX_VERIFY_RETURN_INT(long, digit, ((PyLongObject*)x)->ob_digit[0]); + case 0: return (long) 0; + case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0]) + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) { + return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) { + return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) { + return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])); + } + } + break; } - #endif #endif +#if CYTHON_COMPILING_IN_CPYTHON if (unlikely(Py_SIZE(x) < 0)) { goto raise_neg_overflow; } +#else + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (long) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; + } +#endif if (sizeof(long) <= sizeof(unsigned long)) { - __PYX_VERIFY_RETURN_INT(long, unsigned long, PyLong_AsUnsignedLong(x)) - } else if (sizeof(long) <= sizeof(unsigned long long)) { - __PYX_VERIFY_RETURN_INT(long, unsigned long long, PyLong_AsUnsignedLongLong(x)) + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif } } else { -#if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; switch (Py_SIZE(x)) { - case 0: return 0; - case 1: __PYX_VERIFY_RETURN_INT(long, digit, +(((PyLongObject*)x)->ob_digit[0])); - case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, -(sdigit) ((PyLongObject*)x)->ob_digit[0]); + case 0: return (long) 0; + case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0]) + case -2: + if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(long) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(long) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(long) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) { + return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]))); + } + } + break; } - #endif #endif if (sizeof(long) <= sizeof(long)) { - __PYX_VERIFY_RETURN_INT(long, long, PyLong_AsLong(x)) - } else if (sizeof(long) <= sizeof(long long)) { - __PYX_VERIFY_RETURN_INT(long, long long, PyLong_AsLongLong(x)) + __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif } } { @@ -20948,7 +37403,7 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else long val; - PyObject *v = __Pyx_PyNumber_Int(x); + PyObject *v = __Pyx_PyNumber_IntOrLong(x); #if PY_MAJOR_VERSION < 3 if (likely(v) && !PyLong_Check(v)) { PyObject *tmp = v; @@ -20971,7 +37426,7 @@ static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) { } } else { long val; - PyObject *tmp = __Pyx_PyNumber_Int(x); + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); if (!tmp) return (long) -1; val = __Pyx_PyInt_As_long(tmp); Py_DECREF(tmp); @@ -20987,274 +37442,200 @@ raise_neg_overflow: return (long) -1; } -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - return ::std::complex< float >(x, y); - } - #else - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - return x + y*(__pyx_t_float_complex)_Complex_I; - } - #endif -#else - static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) { - __pyx_t_float_complex z; - z.real = x; - z.imag = y; - return z; - } -#endif - -#if CYTHON_CCOMPLEX -#else - static CYTHON_INLINE int __Pyx_c_eqf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - return (a.real == b.real) && (a.imag == b.imag); - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sumf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - z.real = a.real + b.real; - z.imag = a.imag + b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_difff(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - z.real = a.real - b.real; - z.imag = a.imag - b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prodf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - z.real = a.real * b.real - a.imag * b.imag; - z.imag = a.real * b.imag + a.imag * b.real; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quotf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - float denom = b.real * b.real + b.imag * b.imag; - z.real = (a.real * b.real + a.imag * b.imag) / denom; - z.imag = (a.imag * b.real - a.real * b.imag) / denom; - return z; - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_negf(__pyx_t_float_complex a) { - __pyx_t_float_complex z; - z.real = -a.real; - z.imag = -a.imag; - return z; - } - static CYTHON_INLINE int __Pyx_c_is_zerof(__pyx_t_float_complex a) { - return (a.real == 0) && (a.imag == 0); - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conjf(__pyx_t_float_complex a) { - __pyx_t_float_complex z; - z.real = a.real; - z.imag = -a.imag; - return z; - } - #if 1 - static CYTHON_INLINE float __Pyx_c_absf(__pyx_t_float_complex z) { - #if !defined(HAVE_HYPOT) || defined(_MSC_VER) - return sqrtf(z.real*z.real + z.imag*z.imag); - #else - return hypotf(z.real, z.imag); - #endif - } - static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_powf(__pyx_t_float_complex a, __pyx_t_float_complex b) { - __pyx_t_float_complex z; - float r, lnr, theta, z_r, z_theta; - if (b.imag == 0 && b.real == (int)b.real) { - if (b.real < 0) { - float denom = a.real * a.real + a.imag * a.imag; - a.real = a.real / denom; - a.imag = -a.imag / denom; - b.real = -b.real; - } - switch ((int)b.real) { - case 0: - z.real = 1; - z.imag = 0; - return z; - case 1: - return a; - case 2: - z = __Pyx_c_prodf(a, a); - return __Pyx_c_prodf(a, a); - case 3: - z = __Pyx_c_prodf(a, a); - return __Pyx_c_prodf(z, a); - case 4: - z = __Pyx_c_prodf(a, a); - return __Pyx_c_prodf(z, z); - } - } - if (a.imag == 0) { - if (a.real == 0) { - return a; - } - r = a.real; - theta = 0; - } else { - r = __Pyx_c_absf(a); - theta = atan2f(a.imag, a.real); +/* CIntFromPy */ + static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *x) { + const char neg_one = (char) -1, const_zero = (char) 0; + const int is_unsigned = neg_one > const_zero; +#if PY_MAJOR_VERSION < 3 + if (likely(PyInt_Check(x))) { + if (sizeof(char) < sizeof(long)) { + __PYX_VERIFY_RETURN_INT(char, long, PyInt_AS_LONG(x)) + } else { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + goto raise_neg_overflow; } - lnr = logf(r); - z_r = expf(lnr * b.real - theta * b.imag); - z_theta = theta * b.real + lnr * b.imag; - z.real = z_r * cosf(z_theta); - z.imag = z_r * sinf(z_theta); - return z; + return (char) val; } - #endif + } else #endif - -#if CYTHON_CCOMPLEX - #ifdef __cplusplus - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - return ::std::complex< double >(x, y); - } - #else - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - return x + y*(__pyx_t_double_complex)_Complex_I; - } - #endif -#else - static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) { - __pyx_t_double_complex z; - z.real = x; - z.imag = y; - return z; - } + if (likely(PyLong_Check(x))) { + if (is_unsigned) { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (char) 0; + case 1: __PYX_VERIFY_RETURN_INT(char, digit, digits[0]) + case 2: + if (8 * sizeof(char) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(char) >= 2 * PyLong_SHIFT) { + return (char) (((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0])); + } + } + break; + case 3: + if (8 * sizeof(char) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(char) >= 3 * PyLong_SHIFT) { + return (char) (((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])); + } + } + break; + case 4: + if (8 * sizeof(char) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(char) >= 4 * PyLong_SHIFT) { + return (char) (((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0])); + } + } + break; + } #endif - -#if CYTHON_CCOMPLEX +#if CYTHON_COMPILING_IN_CPYTHON + if (unlikely(Py_SIZE(x) < 0)) { + goto raise_neg_overflow; + } #else - static CYTHON_INLINE int __Pyx_c_eq(__pyx_t_double_complex a, __pyx_t_double_complex b) { - return (a.real == b.real) && (a.imag == b.imag); - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real + b.real; - z.imag = a.imag + b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real - b.real; - z.imag = a.imag - b.imag; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - z.real = a.real * b.real - a.imag * b.imag; - z.imag = a.real * b.imag + a.imag * b.real; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - double denom = b.real * b.real + b.imag * b.imag; - z.real = (a.real * b.real + a.imag * b.imag) / denom; - z.imag = (a.imag * b.real - a.real * b.imag) / denom; - return z; - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg(__pyx_t_double_complex a) { - __pyx_t_double_complex z; - z.real = -a.real; - z.imag = -a.imag; - return z; - } - static CYTHON_INLINE int __Pyx_c_is_zero(__pyx_t_double_complex a) { - return (a.real == 0) && (a.imag == 0); - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj(__pyx_t_double_complex a) { - __pyx_t_double_complex z; - z.real = a.real; - z.imag = -a.imag; - return z; - } - #if 1 - static CYTHON_INLINE double __Pyx_c_abs(__pyx_t_double_complex z) { - #if !defined(HAVE_HYPOT) || defined(_MSC_VER) - return sqrt(z.real*z.real + z.imag*z.imag); - #else - return hypot(z.real, z.imag); - #endif - } - static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow(__pyx_t_double_complex a, __pyx_t_double_complex b) { - __pyx_t_double_complex z; - double r, lnr, theta, z_r, z_theta; - if (b.imag == 0 && b.real == (int)b.real) { - if (b.real < 0) { - double denom = a.real * a.real + a.imag * a.imag; - a.real = a.real / denom; - a.imag = -a.imag / denom; - b.real = -b.real; - } - switch ((int)b.real) { - case 0: - z.real = 1; - z.imag = 0; - return z; - case 1: - return a; - case 2: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(a, a); - case 3: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(z, a); - case 4: - z = __Pyx_c_prod(a, a); - return __Pyx_c_prod(z, z); - } + { + int result = PyObject_RichCompareBool(x, Py_False, Py_LT); + if (unlikely(result < 0)) + return (char) -1; + if (unlikely(result == 1)) + goto raise_neg_overflow; } - if (a.imag == 0) { - if (a.real == 0) { - return a; - } - r = a.real; - theta = 0; - } else { - r = __Pyx_c_abs(a); - theta = atan2(a.imag, a.real); +#endif + if (sizeof(char) <= sizeof(unsigned long)) { + __PYX_VERIFY_RETURN_INT_EXC(char, unsigned long, PyLong_AsUnsignedLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(char) <= sizeof(unsigned PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(char, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x)) +#endif + } + } else { +#if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)x)->ob_digit; + switch (Py_SIZE(x)) { + case 0: return (char) 0; + case -1: __PYX_VERIFY_RETURN_INT(char, sdigit, (sdigit) (-(sdigit)digits[0])) + case 1: __PYX_VERIFY_RETURN_INT(char, digit, +digits[0]) + case -2: + if (8 * sizeof(char) - 1 > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) { + return (char) (((char)-1)*(((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0]))); + } + } + break; + case 2: + if (8 * sizeof(char) > 1 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) { + return (char) ((((((char)digits[1]) << PyLong_SHIFT) | (char)digits[0]))); + } + } + break; + case -3: + if (8 * sizeof(char) - 1 > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) { + return (char) (((char)-1)*(((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0]))); + } + } + break; + case 3: + if (8 * sizeof(char) > 2 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) { + return (char) ((((((((char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0]))); + } + } + break; + case -4: + if (8 * sizeof(char) - 1 > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(char, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(char) - 1 > 4 * PyLong_SHIFT) { + return (char) (((char)-1)*(((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0]))); + } + } + break; + case 4: + if (8 * sizeof(char) > 3 * PyLong_SHIFT) { + if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) { + __PYX_VERIFY_RETURN_INT(char, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]))) + } else if (8 * sizeof(char) - 1 > 4 * PyLong_SHIFT) { + return (char) ((((((((((char)digits[3]) << PyLong_SHIFT) | (char)digits[2]) << PyLong_SHIFT) | (char)digits[1]) << PyLong_SHIFT) | (char)digits[0]))); + } + } + break; } - lnr = log(r); - z_r = exp(lnr * b.real - theta * b.imag); - z_theta = theta * b.real + lnr * b.imag; - z.real = z_r * cos(z_theta); - z.imag = z_r * sin(z_theta); - return z; - } - #endif #endif - -static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb) { - PyObject *tmp_type, *tmp_value, *tmp_tb; -#if CYTHON_COMPILING_IN_CPYTHON - PyThreadState *tstate = PyThreadState_GET(); - tmp_type = tstate->exc_type; - tmp_value = tstate->exc_value; - tmp_tb = tstate->exc_traceback; - tstate->exc_type = *type; - tstate->exc_value = *value; - tstate->exc_traceback = *tb; + if (sizeof(char) <= sizeof(long)) { + __PYX_VERIFY_RETURN_INT_EXC(char, long, PyLong_AsLong(x)) +#ifdef HAVE_LONG_LONG + } else if (sizeof(char) <= sizeof(PY_LONG_LONG)) { + __PYX_VERIFY_RETURN_INT_EXC(char, PY_LONG_LONG, PyLong_AsLongLong(x)) +#endif + } + } + { +#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray) + PyErr_SetString(PyExc_RuntimeError, + "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers"); #else - PyErr_GetExcInfo(&tmp_type, &tmp_value, &tmp_tb); - PyErr_SetExcInfo(*type, *value, *tb); + char val; + PyObject *v = __Pyx_PyNumber_IntOrLong(x); + #if PY_MAJOR_VERSION < 3 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } #endif - *type = tmp_type; - *value = tmp_value; - *tb = tmp_tb; + return (char) -1; + } + } else { + char val; + PyObject *tmp = __Pyx_PyNumber_IntOrLong(x); + if (!tmp) return (char) -1; + val = __Pyx_PyInt_As_char(tmp); + Py_DECREF(tmp); + return val; + } +raise_overflow: + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to char"); + return (char) -1; +raise_neg_overflow: + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to char"); + return (char) -1; } -static PyObject *__Pyx_Generator_Next(PyObject *self); -static PyObject *__Pyx_Generator_Send(PyObject *self, PyObject *value); -static PyObject *__Pyx_Generator_Close(PyObject *self); -static PyObject *__Pyx_Generator_Throw(PyObject *gen, PyObject *args); -static PyTypeObject *__pyx_GeneratorType = 0; -#define __Pyx_Generator_CheckExact(obj) (Py_TYPE(obj) == __pyx_GeneratorType) -#define __Pyx_Generator_Undelegate(gen) Py_CLEAR((gen)->yieldfrom) -#if 1 || PY_VERSION_HEX < 0x030300B0 -static int __Pyx_PyGen_FetchStopIterationValue(PyObject **pvalue) { +/* CoroutineBase */ + #include <structmember.h> +#include <frameobject.h> +#define __Pyx_Coroutine_Undelegate(gen) Py_CLEAR((gen)->yieldfrom) +static int __Pyx_PyGen__FetchStopIterationValue(CYTHON_UNUSED PyThreadState *__pyx_tstate, PyObject **pvalue) { PyObject *et, *ev, *tb; PyObject *value = NULL; __Pyx_ErrFetch(&et, &ev, &tb); @@ -21265,25 +37646,47 @@ static int __Pyx_PyGen_FetchStopIterationValue(PyObject **pvalue) { *pvalue = Py_None; return 0; } - if (unlikely(et != PyExc_StopIteration) && - unlikely(!PyErr_GivenExceptionMatches(et, PyExc_StopIteration))) { - __Pyx_ErrRestore(et, ev, tb); - return -1; - } if (likely(et == PyExc_StopIteration)) { - if (likely(!ev) || !PyObject_IsInstance(ev, PyExc_StopIteration)) { - if (!ev) { + if (!ev) { + Py_INCREF(Py_None); + value = Py_None; + } +#if PY_VERSION_HEX >= 0x030300A0 + else if (Py_TYPE(ev) == (PyTypeObject*)PyExc_StopIteration) { + value = ((PyStopIterationObject *)ev)->value; + Py_INCREF(value); + Py_DECREF(ev); + } +#endif + else if (unlikely(PyTuple_Check(ev))) { + if (PyTuple_GET_SIZE(ev) >= 1) { +#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + value = PyTuple_GET_ITEM(ev, 0); + Py_INCREF(value); +#else + value = PySequence_ITEM(ev, 0); +#endif + } else { Py_INCREF(Py_None); - ev = Py_None; + value = Py_None; } + Py_DECREF(ev); + } + else if (!__Pyx_TypeCheck(ev, (PyTypeObject*)PyExc_StopIteration)) { + value = ev; + } + if (likely(value)) { Py_XDECREF(tb); Py_DECREF(et); - *pvalue = ev; + *pvalue = value; return 0; } + } else if (!__Pyx_PyErr_GivenExceptionMatches(et, PyExc_StopIteration)) { + __Pyx_ErrRestore(et, ev, tb); + return -1; } PyErr_NormalizeException(&et, &ev, &tb); - if (unlikely(!PyObject_IsInstance(ev, PyExc_StopIteration))) { + if (unlikely(!PyObject_TypeCheck(ev, (PyTypeObject*)PyExc_StopIteration))) { __Pyx_ErrRestore(et, ev, tb); return -1; } @@ -21295,10 +37698,10 @@ static int __Pyx_PyGen_FetchStopIterationValue(PyObject **pvalue) { Py_DECREF(ev); #else { - PyObject* args = PyObject_GetAttr(ev, __pyx_n_s_args); + PyObject* args = __Pyx_PyObject_GetAttrStr(ev, __pyx_n_s_args); Py_DECREF(ev); if (likely(args)) { - value = PyObject_GetItem(args, 0); + value = PySequence_GetItem(args, 0); Py_DECREF(args); } if (unlikely(!value)) { @@ -21311,9 +37714,8 @@ static int __Pyx_PyGen_FetchStopIterationValue(PyObject **pvalue) { *pvalue = value; return 0; } -#endif static CYTHON_INLINE -void __Pyx_Generator_ExceptionClear(__pyx_GeneratorObject *self) { +void __Pyx_Coroutine_ExceptionClear(__pyx_CoroutineObject *self) { PyObject *exc_type = self->exc_type; PyObject *exc_value = self->exc_value; PyObject *exc_traceback = self->exc_traceback; @@ -21324,36 +37726,80 @@ void __Pyx_Generator_ExceptionClear(__pyx_GeneratorObject *self) { Py_XDECREF(exc_value); Py_XDECREF(exc_traceback); } -static CYTHON_INLINE -int __Pyx_Generator_CheckRunning(__pyx_GeneratorObject *gen) { - if (unlikely(gen->is_running)) { - PyErr_SetString(PyExc_ValueError, - "generator already executing"); - return 1; +#define __Pyx_Coroutine_AlreadyRunningError(gen) (__Pyx__Coroutine_AlreadyRunningError(gen), (PyObject*)NULL) +static void __Pyx__Coroutine_AlreadyRunningError(CYTHON_UNUSED __pyx_CoroutineObject *gen) { + const char *msg; + if (0) { + #ifdef __Pyx_Coroutine_USED + } else if (__Pyx_Coroutine_Check((PyObject*)gen)) { + msg = "coroutine already executing"; + #endif + #ifdef __Pyx_AsyncGen_USED + } else if (__Pyx_AsyncGen_CheckExact((PyObject*)gen)) { + msg = "async generator already executing"; + #endif + } else { + msg = "generator already executing"; } - return 0; + PyErr_SetString(PyExc_ValueError, msg); } -static CYTHON_INLINE -PyObject *__Pyx_Generator_SendEx(__pyx_GeneratorObject *self, PyObject *value) { +#define __Pyx_Coroutine_NotStartedError(gen) (__Pyx__Coroutine_NotStartedError(gen), (PyObject*)NULL) +static void __Pyx__Coroutine_NotStartedError(CYTHON_UNUSED PyObject *gen) { + const char *msg; + if (0) { + #ifdef __Pyx_Coroutine_USED + } else if (__Pyx_Coroutine_Check(gen)) { + msg = "can't send non-None value to a just-started coroutine"; + #endif + #ifdef __Pyx_AsyncGen_USED + } else if (__Pyx_AsyncGen_CheckExact(gen)) { + msg = "can't send non-None value to a just-started async generator"; + #endif + } else { + msg = "can't send non-None value to a just-started generator"; + } + PyErr_SetString(PyExc_TypeError, msg); +} +#define __Pyx_Coroutine_AlreadyTerminatedError(gen, value, closing) (__Pyx__Coroutine_AlreadyTerminatedError(gen, value, closing), (PyObject*)NULL) +static void __Pyx__Coroutine_AlreadyTerminatedError(CYTHON_UNUSED PyObject *gen, PyObject *value, CYTHON_UNUSED int closing) { + #ifdef __Pyx_Coroutine_USED + if (!closing && __Pyx_Coroutine_Check(gen)) { + PyErr_SetString(PyExc_RuntimeError, "cannot reuse already awaited coroutine"); + } else + #endif + if (value) { + #ifdef __Pyx_AsyncGen_USED + if (__Pyx_AsyncGen_CheckExact(gen)) + PyErr_SetNone(__Pyx_PyExc_StopAsyncIteration); + else + #endif + PyErr_SetNone(PyExc_StopIteration); + } +} +static +PyObject *__Pyx_Coroutine_SendEx(__pyx_CoroutineObject *self, PyObject *value, int closing) { + __Pyx_PyThreadState_declare + PyThreadState *tstate; PyObject *retval; assert(!self->is_running); if (unlikely(self->resume_label == 0)) { if (unlikely(value && value != Py_None)) { - PyErr_SetString(PyExc_TypeError, - "can't send non-None value to a " - "just-started generator"); - return NULL; + return __Pyx_Coroutine_NotStartedError((PyObject*)self); } } if (unlikely(self->resume_label == -1)) { - PyErr_SetNone(PyExc_StopIteration); - return NULL; + return __Pyx_Coroutine_AlreadyTerminatedError((PyObject*)self, value, closing); } - if (value) { -#if CYTHON_COMPILING_IN_PYPY +#if CYTHON_FAST_THREAD_STATE + __Pyx_PyThreadState_assign + tstate = __pyx_tstate; +#else + tstate = __Pyx_PyThreadState_Current; +#endif + if (self->exc_type) { +#if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_PYSTON #else if (self->exc_traceback) { - PyThreadState *tstate = PyThreadState_GET(); PyTracebackObject *tb = (PyTracebackObject *) self->exc_traceback; PyFrameObject *f = tb->tb_frame; Py_XINCREF(tstate->frame); @@ -21364,67 +37810,87 @@ PyObject *__Pyx_Generator_SendEx(__pyx_GeneratorObject *self, PyObject *value) { __Pyx_ExceptionSwap(&self->exc_type, &self->exc_value, &self->exc_traceback); } else { - __Pyx_Generator_ExceptionClear(self); + __Pyx_Coroutine_ExceptionClear(self); + __Pyx_ExceptionSave(&self->exc_type, &self->exc_value, &self->exc_traceback); } self->is_running = 1; - retval = self->body((PyObject *) self, value); + retval = self->body((PyObject *) self, tstate, value); self->is_running = 0; - if (retval) { - __Pyx_ExceptionSwap(&self->exc_type, &self->exc_value, - &self->exc_traceback); -#if CYTHON_COMPILING_IN_PYPY + return retval; +} +static CYTHON_INLINE void __Pyx_Coroutine_ResetFrameBackpointer(__pyx_CoroutineObject *self) { + if (likely(self->exc_traceback)) { +#if CYTHON_COMPILING_IN_PYPY || CYTHON_COMPILING_IN_PYSTON #else - if (self->exc_traceback) { - PyTracebackObject *tb = (PyTracebackObject *) self->exc_traceback; - PyFrameObject *f = tb->tb_frame; - Py_CLEAR(f->f_back); - } + PyTracebackObject *tb = (PyTracebackObject *) self->exc_traceback; + PyFrameObject *f = tb->tb_frame; + Py_CLEAR(f->f_back); #endif - } else { - __Pyx_Generator_ExceptionClear(self); + } +} +static CYTHON_INLINE +PyObject *__Pyx_Coroutine_MethodReturn(CYTHON_UNUSED PyObject* gen, PyObject *retval) { + if (unlikely(!retval)) { + __Pyx_PyThreadState_declare + __Pyx_PyThreadState_assign + if (!__Pyx_PyErr_Occurred()) { + PyObject *exc = PyExc_StopIteration; + #ifdef __Pyx_AsyncGen_USED + if (__Pyx_AsyncGen_CheckExact(gen)) + exc = __Pyx_PyExc_StopAsyncIteration; + #endif + __Pyx_PyErr_SetNone(exc); + } } return retval; } static CYTHON_INLINE -PyObject *__Pyx_Generator_FinishDelegation(__pyx_GeneratorObject *gen) { +PyObject *__Pyx_Coroutine_FinishDelegation(__pyx_CoroutineObject *gen) { PyObject *ret; PyObject *val = NULL; - __Pyx_Generator_Undelegate(gen); - __Pyx_PyGen_FetchStopIterationValue(&val); - ret = __Pyx_Generator_SendEx(gen, val); + __Pyx_Coroutine_Undelegate(gen); + __Pyx_PyGen__FetchStopIterationValue(__Pyx_PyThreadState_Current, &val); + ret = __Pyx_Coroutine_SendEx(gen, val, 0); Py_XDECREF(val); return ret; } -static PyObject *__Pyx_Generator_Next(PyObject *self) { - __pyx_GeneratorObject *gen = (__pyx_GeneratorObject*) self; - PyObject *yf = gen->yieldfrom; - if (unlikely(__Pyx_Generator_CheckRunning(gen))) - return NULL; - if (yf) { - PyObject *ret; - gen->is_running = 1; - ret = Py_TYPE(yf)->tp_iternext(yf); - gen->is_running = 0; - if (likely(ret)) { - return ret; - } - return __Pyx_Generator_FinishDelegation(gen); - } - return __Pyx_Generator_SendEx(gen, Py_None); -} -static PyObject *__Pyx_Generator_Send(PyObject *self, PyObject *value) { - __pyx_GeneratorObject *gen = (__pyx_GeneratorObject*) self; +static PyObject *__Pyx_Coroutine_Send(PyObject *self, PyObject *value) { + PyObject *retval; + __pyx_CoroutineObject *gen = (__pyx_CoroutineObject*) self; PyObject *yf = gen->yieldfrom; - if (unlikely(__Pyx_Generator_CheckRunning(gen))) - return NULL; + if (unlikely(gen->is_running)) + return __Pyx_Coroutine_AlreadyRunningError(gen); if (yf) { PyObject *ret; gen->is_running = 1; + #ifdef __Pyx_Generator_USED if (__Pyx_Generator_CheckExact(yf)) { - ret = __Pyx_Generator_Send(yf, value); - } else { + ret = __Pyx_Coroutine_Send(yf, value); + } else + #endif + #ifdef __Pyx_Coroutine_USED + if (__Pyx_Coroutine_Check(yf)) { + ret = __Pyx_Coroutine_Send(yf, value); + } else + #endif + #ifdef __Pyx_AsyncGen_USED + if (__pyx_PyAsyncGenASend_CheckExact(yf)) { + ret = __Pyx_async_gen_asend_send(yf, value); + } else + #endif + #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03030000 && (defined(__linux__) || PY_VERSION_HEX >= 0x030600B3) + if (PyGen_CheckExact(yf)) { + ret = _PyGen_Send((PyGenObject*)yf, value == Py_None ? NULL : value); + } else + #endif + #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03050000 && defined(PyCoro_CheckExact) && (defined(__linux__) || PY_VERSION_HEX >= 0x030600B3) + if (PyCoro_CheckExact(yf)) { + ret = _PyGen_Send((PyGenObject*)yf, value == Py_None ? NULL : value); + } else + #endif + { if (value == Py_None) - ret = PyIter_Next(yf); + ret = Py_TYPE(yf)->tp_iternext(yf); else ret = __Pyx_PyObject_CallMethod1(yf, __pyx_n_s_send, value); } @@ -21432,21 +37898,46 @@ static PyObject *__Pyx_Generator_Send(PyObject *self, PyObject *value) { if (likely(ret)) { return ret; } - return __Pyx_Generator_FinishDelegation(gen); + retval = __Pyx_Coroutine_FinishDelegation(gen); + } else { + retval = __Pyx_Coroutine_SendEx(gen, value, 0); } - return __Pyx_Generator_SendEx(gen, value); + return __Pyx_Coroutine_MethodReturn(self, retval); } -static int __Pyx_Generator_CloseIter(__pyx_GeneratorObject *gen, PyObject *yf) { +static int __Pyx_Coroutine_CloseIter(__pyx_CoroutineObject *gen, PyObject *yf) { PyObject *retval = NULL; int err = 0; + #ifdef __Pyx_Generator_USED if (__Pyx_Generator_CheckExact(yf)) { - retval = __Pyx_Generator_Close(yf); + retval = __Pyx_Coroutine_Close(yf); if (!retval) return -1; - } else { + } else + #endif + #ifdef __Pyx_Coroutine_USED + if (__Pyx_Coroutine_Check(yf)) { + retval = __Pyx_Coroutine_Close(yf); + if (!retval) + return -1; + } else + if (__Pyx_CoroutineAwait_CheckExact(yf)) { + retval = __Pyx_CoroutineAwait_Close((__pyx_CoroutineAwaitObject*)yf); + if (!retval) + return -1; + } else + #endif + #ifdef __Pyx_AsyncGen_USED + if (__pyx_PyAsyncGenASend_CheckExact(yf)) { + retval = __Pyx_async_gen_asend_close(yf, NULL); + } else + if (__pyx_PyAsyncGenAThrow_CheckExact(yf)) { + retval = __Pyx_async_gen_athrow_close(yf, NULL); + } else + #endif + { PyObject *meth; gen->is_running = 1; - meth = PyObject_GetAttr(yf, __pyx_n_s_close); + meth = __Pyx_PyObject_GetAttrStr(yf, __pyx_n_s_close); if (unlikely(!meth)) { if (!PyErr_ExceptionMatches(PyExc_AttributeError)) { PyErr_WriteUnraisable(yf); @@ -21463,67 +37954,117 @@ static int __Pyx_Generator_CloseIter(__pyx_GeneratorObject *gen, PyObject *yf) { Py_XDECREF(retval); return err; } -static PyObject *__Pyx_Generator_Close(PyObject *self) { - __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self; +static PyObject *__Pyx_Generator_Next(PyObject *self) { + __pyx_CoroutineObject *gen = (__pyx_CoroutineObject*) self; + PyObject *yf = gen->yieldfrom; + if (unlikely(gen->is_running)) + return __Pyx_Coroutine_AlreadyRunningError(gen); + if (yf) { + PyObject *ret; + gen->is_running = 1; + #ifdef __Pyx_Generator_USED + if (__Pyx_Generator_CheckExact(yf)) { + ret = __Pyx_Generator_Next(yf); + } else + #endif + #if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x03030000 && (defined(__linux__) || PY_VERSION_HEX >= 0x030600B3) + if (PyGen_CheckExact(yf)) { + ret = _PyGen_Send((PyGenObject*)yf, NULL); + } else + #endif + #ifdef __Pyx_Coroutine_USED + if (__Pyx_Coroutine_Check(yf)) { + ret = __Pyx_Coroutine_Send(yf, Py_None); + } else + #endif + ret = Py_TYPE(yf)->tp_iternext(yf); + gen->is_running = 0; + if (likely(ret)) { + return ret; + } + return __Pyx_Coroutine_FinishDelegation(gen); + } + return __Pyx_Coroutine_SendEx(gen, Py_None, 0); +} +static PyObject *__Pyx_Coroutine_Close(PyObject *self) { + __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self; PyObject *retval, *raised_exception; PyObject *yf = gen->yieldfrom; int err = 0; - if (unlikely(__Pyx_Generator_CheckRunning(gen))) - return NULL; + if (unlikely(gen->is_running)) + return __Pyx_Coroutine_AlreadyRunningError(gen); if (yf) { Py_INCREF(yf); - err = __Pyx_Generator_CloseIter(gen, yf); - __Pyx_Generator_Undelegate(gen); + err = __Pyx_Coroutine_CloseIter(gen, yf); + __Pyx_Coroutine_Undelegate(gen); Py_DECREF(yf); } if (err == 0) PyErr_SetNone(PyExc_GeneratorExit); - retval = __Pyx_Generator_SendEx(gen, NULL); - if (retval) { + retval = __Pyx_Coroutine_SendEx(gen, NULL, 1); + if (unlikely(retval)) { + const char *msg; Py_DECREF(retval); - PyErr_SetString(PyExc_RuntimeError, - "generator ignored GeneratorExit"); + if ((0)) { + #ifdef __Pyx_Coroutine_USED + } else if (__Pyx_Coroutine_Check(self)) { + msg = "coroutine ignored GeneratorExit"; + #endif + #ifdef __Pyx_AsyncGen_USED + } else if (__Pyx_AsyncGen_CheckExact(self)) { +#if PY_VERSION_HEX < 0x03060000 + msg = "async generator ignored GeneratorExit - might require Python 3.6+ finalisation (PEP 525)"; +#else + msg = "async generator ignored GeneratorExit"; +#endif + #endif + } else { + msg = "generator ignored GeneratorExit"; + } + PyErr_SetString(PyExc_RuntimeError, msg); return NULL; } raised_exception = PyErr_Occurred(); - if (!raised_exception - || raised_exception == PyExc_StopIteration - || raised_exception == PyExc_GeneratorExit - || PyErr_GivenExceptionMatches(raised_exception, PyExc_GeneratorExit) - || PyErr_GivenExceptionMatches(raised_exception, PyExc_StopIteration)) - { + if (likely(!raised_exception || __Pyx_PyErr_GivenExceptionMatches2(raised_exception, PyExc_GeneratorExit, PyExc_StopIteration))) { if (raised_exception) PyErr_Clear(); Py_INCREF(Py_None); return Py_None; } return NULL; } -static PyObject *__Pyx_Generator_Throw(PyObject *self, PyObject *args) { - __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self; - PyObject *typ; - PyObject *tb = NULL; - PyObject *val = NULL; +static PyObject *__Pyx__Coroutine_Throw(PyObject *self, PyObject *typ, PyObject *val, PyObject *tb, + PyObject *args, int close_on_genexit) { + __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self; PyObject *yf = gen->yieldfrom; - if (!PyArg_UnpackTuple(args, (char *)"throw", 1, 3, &typ, &val, &tb)) - return NULL; - if (unlikely(__Pyx_Generator_CheckRunning(gen))) - return NULL; + if (unlikely(gen->is_running)) + return __Pyx_Coroutine_AlreadyRunningError(gen); if (yf) { PyObject *ret; Py_INCREF(yf); - if (PyErr_GivenExceptionMatches(typ, PyExc_GeneratorExit)) { - int err = __Pyx_Generator_CloseIter(gen, yf); + if (__Pyx_PyErr_GivenExceptionMatches(typ, PyExc_GeneratorExit) && close_on_genexit) { + int err = __Pyx_Coroutine_CloseIter(gen, yf); Py_DECREF(yf); - __Pyx_Generator_Undelegate(gen); + __Pyx_Coroutine_Undelegate(gen); if (err < 0) - return __Pyx_Generator_SendEx(gen, NULL); + return __Pyx_Coroutine_MethodReturn(self, __Pyx_Coroutine_SendEx(gen, NULL, 0)); goto throw_here; } gen->is_running = 1; - if (__Pyx_Generator_CheckExact(yf)) { - ret = __Pyx_Generator_Throw(yf, args); + if (0 + #ifdef __Pyx_Generator_USED + || __Pyx_Generator_CheckExact(yf) + #endif + #ifdef __Pyx_Coroutine_USED + || __Pyx_Coroutine_Check(yf) + #endif + ) { + ret = __Pyx__Coroutine_Throw(yf, typ, val, tb, args, close_on_genexit); + #ifdef __Pyx_Coroutine_USED + } else if (__Pyx_CoroutineAwait_CheckExact(yf)) { + ret = __Pyx__Coroutine_Throw(((__pyx_CoroutineAwaitObject*)yf)->coroutine, typ, val, tb, args, close_on_genexit); + #endif } else { - PyObject *meth = PyObject_GetAttr(yf, __pyx_n_s_throw); + PyObject *meth = __Pyx_PyObject_GetAttrStr(yf, __pyx_n_s_throw); if (unlikely(!meth)) { Py_DECREF(yf); if (!PyErr_ExceptionMatches(PyExc_AttributeError)) { @@ -21531,26 +38072,37 @@ static PyObject *__Pyx_Generator_Throw(PyObject *self, PyObject *args) { return NULL; } PyErr_Clear(); - __Pyx_Generator_Undelegate(gen); + __Pyx_Coroutine_Undelegate(gen); gen->is_running = 0; goto throw_here; } - ret = PyObject_CallObject(meth, args); + if (likely(args)) { + ret = PyObject_CallObject(meth, args); + } else { + ret = PyObject_CallFunctionObjArgs(meth, typ, val, tb, NULL); + } Py_DECREF(meth); } gen->is_running = 0; Py_DECREF(yf); if (!ret) { - ret = __Pyx_Generator_FinishDelegation(gen); + ret = __Pyx_Coroutine_FinishDelegation(gen); } - return ret; + return __Pyx_Coroutine_MethodReturn(self, ret); } throw_here: __Pyx_Raise(typ, val, tb, NULL); - return __Pyx_Generator_SendEx(gen, NULL); + return __Pyx_Coroutine_MethodReturn(self, __Pyx_Coroutine_SendEx(gen, NULL, 0)); +} +static PyObject *__Pyx_Coroutine_Throw(PyObject *self, PyObject *args) { + PyObject *typ; + PyObject *val = NULL; + PyObject *tb = NULL; + if (!PyArg_UnpackTuple(args, (char *)"throw", 1, 3, &typ, &val, &tb)) + return NULL; + return __Pyx__Coroutine_Throw(self, typ, val, tb, args, 1); } -static int __Pyx_Generator_traverse(PyObject *self, visitproc visit, void *arg) { - __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self; +static int __Pyx_Coroutine_traverse(__pyx_CoroutineObject *gen, visitproc visit, void *arg) { Py_VISIT(gen->closure); Py_VISIT(gen->classobj); Py_VISIT(gen->yieldfrom); @@ -21559,26 +38111,33 @@ static int __Pyx_Generator_traverse(PyObject *self, visitproc visit, void *arg) Py_VISIT(gen->exc_traceback); return 0; } -static int __Pyx_Generator_clear(PyObject *self) { - __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self; +static int __Pyx_Coroutine_clear(PyObject *self) { + __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self; Py_CLEAR(gen->closure); Py_CLEAR(gen->classobj); Py_CLEAR(gen->yieldfrom); Py_CLEAR(gen->exc_type); Py_CLEAR(gen->exc_value); Py_CLEAR(gen->exc_traceback); +#ifdef __Pyx_AsyncGen_USED + if (__Pyx_AsyncGen_CheckExact(self)) { + Py_CLEAR(((__pyx_PyAsyncGenObject*)gen)->ag_finalizer); + } +#endif + Py_CLEAR(gen->gi_code); Py_CLEAR(gen->gi_name); Py_CLEAR(gen->gi_qualname); + Py_CLEAR(gen->gi_modulename); return 0; } -static void __Pyx_Generator_dealloc(PyObject *self) { - __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self; +static void __Pyx_Coroutine_dealloc(PyObject *self) { + __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self; PyObject_GC_UnTrack(gen); if (gen->gi_weakreflist != NULL) PyObject_ClearWeakRefs(self); - if (gen->resume_label > 0) { + if (gen->resume_label >= 0) { PyObject_GC_Track(self); -#if PY_VERSION_HEX >= 0x030400a1 +#if PY_VERSION_HEX >= 0x030400a1 && CYTHON_USE_TP_FINALIZE if (PyObject_CallFinalizerFromDealloc(self)) #else Py_TYPE(gen)->tp_del(self); @@ -21589,27 +38148,93 @@ static void __Pyx_Generator_dealloc(PyObject *self) { } PyObject_GC_UnTrack(self); } - __Pyx_Generator_clear(self); +#ifdef __Pyx_AsyncGen_USED + if (__Pyx_AsyncGen_CheckExact(self)) { + /* We have to handle this case for asynchronous generators + right here, because this code has to be between UNTRACK + and GC_Del. */ + Py_CLEAR(((__pyx_PyAsyncGenObject*)self)->ag_finalizer); + } +#endif + __Pyx_Coroutine_clear(self); PyObject_GC_Del(gen); } -static void __Pyx_Generator_del(PyObject *self) { - PyObject *res; +static void __Pyx_Coroutine_del(PyObject *self) { PyObject *error_type, *error_value, *error_traceback; - __pyx_GeneratorObject *gen = (__pyx_GeneratorObject *) self; - if (gen->resume_label <= 0) - return ; -#if PY_VERSION_HEX < 0x030400a1 + __pyx_CoroutineObject *gen = (__pyx_CoroutineObject *) self; + __Pyx_PyThreadState_declare + if (gen->resume_label < 0) { + return; + } +#if !CYTHON_USE_TP_FINALIZE assert(self->ob_refcnt == 0); self->ob_refcnt = 1; #endif + __Pyx_PyThreadState_assign __Pyx_ErrFetch(&error_type, &error_value, &error_traceback); - res = __Pyx_Generator_Close(self); - if (res == NULL) - PyErr_WriteUnraisable(self); - else - Py_DECREF(res); +#ifdef __Pyx_AsyncGen_USED + if (__Pyx_AsyncGen_CheckExact(self)) { + __pyx_PyAsyncGenObject *agen = (__pyx_PyAsyncGenObject*)self; + PyObject *finalizer = agen->ag_finalizer; + if (finalizer && !agen->ag_closed) { + PyObject *res = __Pyx_PyObject_CallOneArg(finalizer, self); + if (unlikely(!res)) { + PyErr_WriteUnraisable(self); + } else { + Py_DECREF(res); + } + __Pyx_ErrRestore(error_type, error_value, error_traceback); + return; + } + } +#endif + if (unlikely(gen->resume_label == 0 && !error_value)) { +#ifdef __Pyx_Coroutine_USED +#ifdef __Pyx_Generator_USED + if (!__Pyx_Generator_CheckExact(self)) +#endif + { + PyObject_GC_UnTrack(self); +#if PY_MAJOR_VERSION >= 3 || defined(PyErr_WarnFormat) + if (unlikely(PyErr_WarnFormat(PyExc_RuntimeWarning, 1, "coroutine '%.50S' was never awaited", gen->gi_qualname) < 0)) + PyErr_WriteUnraisable(self); +#else + {PyObject *msg; + char *cmsg; + #if CYTHON_COMPILING_IN_PYPY + msg = NULL; + cmsg = (char*) "coroutine was never awaited"; + #else + char *cname; + PyObject *qualname; + qualname = gen->gi_qualname; + cname = PyString_AS_STRING(qualname); + msg = PyString_FromFormat("coroutine '%.50s' was never awaited", cname); + if (unlikely(!msg)) { + PyErr_Clear(); + cmsg = (char*) "coroutine was never awaited"; + } else { + cmsg = PyString_AS_STRING(msg); + } + #endif + if (unlikely(PyErr_WarnEx(PyExc_RuntimeWarning, cmsg, 1) < 0)) + PyErr_WriteUnraisable(self); + Py_XDECREF(msg);} +#endif + PyObject_GC_Track(self); + } +#endif + } else { + PyObject *res = __Pyx_Coroutine_Close(self); + if (unlikely(!res)) { + if (PyErr_Occurred()) + PyErr_WriteUnraisable(self); + } else { + Py_DECREF(res); + } + } __Pyx_ErrRestore(error_type, error_value, error_traceback); -#if PY_VERSION_HEX < 0x030400a1 +#if !CYTHON_USE_TP_FINALIZE assert(self->ob_refcnt > 0); if (--self->ob_refcnt == 0) { return; @@ -21631,13 +38256,15 @@ static void __Pyx_Generator_del(PyObject *self) { #endif } static PyObject * -__Pyx_Generator_get_name(__pyx_GeneratorObject *self) +__Pyx_Coroutine_get_name(__pyx_CoroutineObject *self) { - Py_INCREF(self->gi_name); - return self->gi_name; + PyObject *name = self->gi_name; + if (unlikely(!name)) name = Py_None; + Py_INCREF(name); + return name; } static int -__Pyx_Generator_set_name(__pyx_GeneratorObject *self, PyObject *value) +__Pyx_Coroutine_set_name(__pyx_CoroutineObject *self, PyObject *value) { PyObject *tmp; #if PY_MAJOR_VERSION >= 3 @@ -21656,13 +38283,15 @@ __Pyx_Generator_set_name(__pyx_GeneratorObject *self, PyObject *value) return 0; } static PyObject * -__Pyx_Generator_get_qualname(__pyx_GeneratorObject *self) +__Pyx_Coroutine_get_qualname(__pyx_CoroutineObject *self) { - Py_INCREF(self->gi_qualname); - return self->gi_qualname; + PyObject *name = self->gi_qualname; + if (unlikely(!name)) name = Py_None; + Py_INCREF(name); + return name; } static int -__Pyx_Generator_set_qualname(__pyx_GeneratorObject *self, PyObject *value) +__Pyx_Coroutine_set_qualname(__pyx_CoroutineObject *self, PyObject *value) { PyObject *tmp; #if PY_MAJOR_VERSION >= 3 @@ -21680,37 +38309,171 @@ __Pyx_Generator_set_qualname(__pyx_GeneratorObject *self, PyObject *value) Py_XDECREF(tmp); return 0; } -static PyGetSetDef __pyx_Generator_getsets[] = { - {(char *) "__name__", (getter)__Pyx_Generator_get_name, (setter)__Pyx_Generator_set_name, - (char*) PyDoc_STR("name of the generator"), 0}, - {(char *) "__qualname__", (getter)__Pyx_Generator_get_qualname, (setter)__Pyx_Generator_set_qualname, - (char*) PyDoc_STR("qualified name of the generator"), 0}, - {0, 0, 0, 0, 0} +static __pyx_CoroutineObject *__Pyx__Coroutine_New( + PyTypeObject* type, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure, + PyObject *name, PyObject *qualname, PyObject *module_name) { + __pyx_CoroutineObject *gen = PyObject_GC_New(__pyx_CoroutineObject, type); + if (unlikely(!gen)) + return NULL; + return __Pyx__Coroutine_NewInit(gen, body, code, closure, name, qualname, module_name); +} +static __pyx_CoroutineObject *__Pyx__Coroutine_NewInit( + __pyx_CoroutineObject *gen, __pyx_coroutine_body_t body, PyObject *code, PyObject *closure, + PyObject *name, PyObject *qualname, PyObject *module_name) { + gen->body = body; + gen->closure = closure; + Py_XINCREF(closure); + gen->is_running = 0; + gen->resume_label = 0; + gen->classobj = NULL; + gen->yieldfrom = NULL; + gen->exc_type = NULL; + gen->exc_value = NULL; + gen->exc_traceback = NULL; + gen->gi_weakreflist = NULL; + Py_XINCREF(qualname); + gen->gi_qualname = qualname; + Py_XINCREF(name); + gen->gi_name = name; + Py_XINCREF(module_name); + gen->gi_modulename = module_name; + Py_XINCREF(code); + gen->gi_code = code; + PyObject_GC_Track(gen); + return gen; +} + +/* PatchModuleWithCoroutine */ + static PyObject* __Pyx_Coroutine_patch_module(PyObject* module, const char* py_code) { +#if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED) + int result; + PyObject *globals, *result_obj; + globals = PyDict_New(); if (unlikely(!globals)) goto ignore; + result = PyDict_SetItemString(globals, "_cython_coroutine_type", + #ifdef __Pyx_Coroutine_USED + (PyObject*)__pyx_CoroutineType); + #else + Py_None); + #endif + if (unlikely(result < 0)) goto ignore; + result = PyDict_SetItemString(globals, "_cython_generator_type", + #ifdef __Pyx_Generator_USED + (PyObject*)__pyx_GeneratorType); + #else + Py_None); + #endif + if (unlikely(result < 0)) goto ignore; + if (unlikely(PyDict_SetItemString(globals, "_module", module) < 0)) goto ignore; + if (unlikely(PyDict_SetItemString(globals, "__builtins__", __pyx_b) < 0)) goto ignore; + result_obj = PyRun_String(py_code, Py_file_input, globals, globals); + if (unlikely(!result_obj)) goto ignore; + Py_DECREF(result_obj); + Py_DECREF(globals); + return module; +ignore: + Py_XDECREF(globals); + PyErr_WriteUnraisable(module); + if (unlikely(PyErr_WarnEx(PyExc_RuntimeWarning, "Cython module failed to patch module with custom type", 1) < 0)) { + Py_DECREF(module); + module = NULL; + } +#else + py_code++; +#endif + return module; +} + +/* PatchGeneratorABC */ + #ifndef CYTHON_REGISTER_ABCS +#define CYTHON_REGISTER_ABCS 1 +#endif +#if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED) +static PyObject* __Pyx_patch_abc_module(PyObject *module); +static PyObject* __Pyx_patch_abc_module(PyObject *module) { + module = __Pyx_Coroutine_patch_module( + module, "" +"if _cython_generator_type is not None:\n" +" try: Generator = _module.Generator\n" +" except AttributeError: pass\n" +" else: Generator.register(_cython_generator_type)\n" +"if _cython_coroutine_type is not None:\n" +" try: Coroutine = _module.Coroutine\n" +" except AttributeError: pass\n" +" else: Coroutine.register(_cython_coroutine_type)\n" + ); + return module; +} +#endif +static int __Pyx_patch_abc(void) { +#if defined(__Pyx_Generator_USED) || defined(__Pyx_Coroutine_USED) + static int abc_patched = 0; + if (CYTHON_REGISTER_ABCS && !abc_patched) { + PyObject *module; + module = PyImport_ImportModule((PY_MAJOR_VERSION >= 3) ? "collections.abc" : "collections"); + if (!module) { + PyErr_WriteUnraisable(NULL); + if (unlikely(PyErr_WarnEx(PyExc_RuntimeWarning, + ((PY_MAJOR_VERSION >= 3) ? + "Cython module failed to register with collections.abc module" : + "Cython module failed to register with collections module"), 1) < 0)) { + return -1; + } + } else { + module = __Pyx_patch_abc_module(module); + abc_patched = 1; + if (unlikely(!module)) + return -1; + Py_DECREF(module); + } + module = PyImport_ImportModule("backports_abc"); + if (module) { + module = __Pyx_patch_abc_module(module); + Py_XDECREF(module); + } + if (!module) { + PyErr_Clear(); + } + } +#else + if ((0)) __Pyx_Coroutine_patch_module(NULL, NULL); +#endif + return 0; +} + +/* Generator */ + static PyMethodDef __pyx_Generator_methods[] = { + {"send", (PyCFunction) __Pyx_Coroutine_Send, METH_O, + (char*) PyDoc_STR("send(arg) -> send 'arg' into generator,\nreturn next yielded value or raise StopIteration.")}, + {"throw", (PyCFunction) __Pyx_Coroutine_Throw, METH_VARARGS, + (char*) PyDoc_STR("throw(typ[,val[,tb]]) -> raise exception in generator,\nreturn next yielded value or raise StopIteration.")}, + {"close", (PyCFunction) __Pyx_Coroutine_Close, METH_NOARGS, + (char*) PyDoc_STR("close() -> raise GeneratorExit inside generator.")}, + {0, 0, 0, 0} }; static PyMemberDef __pyx_Generator_memberlist[] = { - {(char *) "gi_running", T_BOOL, offsetof(__pyx_GeneratorObject, is_running), READONLY, NULL}, + {(char *) "gi_running", T_BOOL, offsetof(__pyx_CoroutineObject, is_running), READONLY, NULL}, + {(char*) "gi_yieldfrom", T_OBJECT, offsetof(__pyx_CoroutineObject, yieldfrom), READONLY, + (char*) PyDoc_STR("object being iterated by 'yield from', or None")}, + {(char*) "gi_code", T_OBJECT, offsetof(__pyx_CoroutineObject, gi_code), READONLY, NULL}, {0, 0, 0, 0, 0} }; -static PyMethodDef __pyx_Generator_methods[] = { - {"send", (PyCFunction) __Pyx_Generator_Send, METH_O, 0}, - {"throw", (PyCFunction) __Pyx_Generator_Throw, METH_VARARGS, 0}, - {"close", (PyCFunction) __Pyx_Generator_Close, METH_NOARGS, 0}, - {0, 0, 0, 0} +static PyGetSetDef __pyx_Generator_getsets[] = { + {(char *) "__name__", (getter)__Pyx_Coroutine_get_name, (setter)__Pyx_Coroutine_set_name, + (char*) PyDoc_STR("name of the generator"), 0}, + {(char *) "__qualname__", (getter)__Pyx_Coroutine_get_qualname, (setter)__Pyx_Coroutine_set_qualname, + (char*) PyDoc_STR("qualified name of the generator"), 0}, + {0, 0, 0, 0, 0} }; static PyTypeObject __pyx_GeneratorType_type = { PyVarObject_HEAD_INIT(0, 0) "generator", - sizeof(__pyx_GeneratorObject), + sizeof(__pyx_CoroutineObject), 0, - (destructor) __Pyx_Generator_dealloc, + (destructor) __Pyx_Coroutine_dealloc, 0, 0, 0, -#if PY_MAJOR_VERSION < 3 0, -#else - 0, -#endif 0, 0, 0, @@ -21723,10 +38486,10 @@ static PyTypeObject __pyx_GeneratorType_type = { 0, Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC | Py_TPFLAGS_HAVE_FINALIZE, 0, - (traverseproc) __Pyx_Generator_traverse, + (traverseproc) __Pyx_Coroutine_traverse, 0, 0, - offsetof(__pyx_GeneratorObject, gi_weakreflist), + offsetof(__pyx_CoroutineObject, gi_weakreflist), 0, (iternextfunc) __Pyx_Generator_Next, __pyx_Generator_methods, @@ -21747,51 +38510,812 @@ static PyTypeObject __pyx_GeneratorType_type = { 0, 0, 0, -#if PY_VERSION_HEX >= 0x030400a1 +#if CYTHON_USE_TP_FINALIZE 0, #else - __Pyx_Generator_del, + __Pyx_Coroutine_del, #endif 0, -#if PY_VERSION_HEX >= 0x030400a1 - __Pyx_Generator_del, +#if CYTHON_USE_TP_FINALIZE + __Pyx_Coroutine_del, +#elif PY_VERSION_HEX >= 0x030400a1 + 0, #endif }; -static __pyx_GeneratorObject *__Pyx_Generator_New(__pyx_generator_body_t body, - PyObject *closure, PyObject *name, PyObject *qualname) { - __pyx_GeneratorObject *gen = - PyObject_GC_New(__pyx_GeneratorObject, &__pyx_GeneratorType_type); - if (gen == NULL) - return NULL; - gen->body = body; - gen->closure = closure; - Py_XINCREF(closure); - gen->is_running = 0; - gen->resume_label = 0; - gen->classobj = NULL; - gen->yieldfrom = NULL; - gen->exc_type = NULL; - gen->exc_value = NULL; - gen->exc_traceback = NULL; - gen->gi_weakreflist = NULL; - Py_XINCREF(qualname); - gen->gi_qualname = qualname; - Py_XINCREF(name); - gen->gi_name = name; - PyObject_GC_Track(gen); - return gen; -} static int __pyx_Generator_init(void) { - __pyx_GeneratorType_type.tp_getattro = PyObject_GenericGetAttr; + __pyx_GeneratorType_type.tp_getattro = __Pyx_PyObject_GenericGetAttrNoDict; __pyx_GeneratorType_type.tp_iter = PyObject_SelfIter; __pyx_GeneratorType = __Pyx_FetchCommonType(&__pyx_GeneratorType_type); - if (__pyx_GeneratorType == NULL) { + if (unlikely(!__pyx_GeneratorType)) { return -1; } return 0; } -static int __Pyx_check_binary_version(void) { +/* IsLittleEndian */ + static CYTHON_INLINE int __Pyx_Is_Little_Endian(void) +{ + union { + uint32_t u32; + uint8_t u8[4]; + } S; + S.u32 = 0x01020304; + return S.u8[0] == 4; +} + +/* BufferFormatCheck */ + static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, + __Pyx_BufFmt_StackElem* stack, + __Pyx_TypeInfo* type) { + stack[0].field = &ctx->root; + stack[0].parent_offset = 0; + ctx->root.type = type; + ctx->root.name = "buffer dtype"; + ctx->root.offset = 0; + ctx->head = stack; + ctx->head->field = &ctx->root; + ctx->fmt_offset = 0; + ctx->head->parent_offset = 0; + ctx->new_packmode = '@'; + ctx->enc_packmode = '@'; + ctx->new_count = 1; + ctx->enc_count = 0; + ctx->enc_type = 0; + ctx->is_complex = 0; + ctx->is_valid_array = 0; + ctx->struct_alignment = 0; + while (type->typegroup == 'S') { + ++ctx->head; + ctx->head->field = type->fields; + ctx->head->parent_offset = 0; + type = type->fields->type; + } +} +static int __Pyx_BufFmt_ParseNumber(const char** ts) { + int count; + const char* t = *ts; + if (*t < '0' || *t > '9') { + return -1; + } else { + count = *t++ - '0'; + while (*t >= '0' && *t < '9') { + count *= 10; + count += *t++ - '0'; + } + } + *ts = t; + return count; +} +static int __Pyx_BufFmt_ExpectNumber(const char **ts) { + int number = __Pyx_BufFmt_ParseNumber(ts); + if (number == -1) + PyErr_Format(PyExc_ValueError,\ + "Does not understand character buffer dtype format string ('%c')", **ts); + return number; +} +static void __Pyx_BufFmt_RaiseUnexpectedChar(char ch) { + PyErr_Format(PyExc_ValueError, + "Unexpected format string character: '%c'", ch); +} +static const char* __Pyx_BufFmt_DescribeTypeChar(char ch, int is_complex) { + switch (ch) { + case 'c': return "'char'"; + case 'b': return "'signed char'"; + case 'B': return "'unsigned char'"; + case 'h': return "'short'"; + case 'H': return "'unsigned short'"; + case 'i': return "'int'"; + case 'I': return "'unsigned int'"; + case 'l': return "'long'"; + case 'L': return "'unsigned long'"; + case 'q': return "'long long'"; + case 'Q': return "'unsigned long long'"; + case 'f': return (is_complex ? "'complex float'" : "'float'"); + case 'd': return (is_complex ? "'complex double'" : "'double'"); + case 'g': return (is_complex ? "'complex long double'" : "'long double'"); + case 'T': return "a struct"; + case 'O': return "Python object"; + case 'P': return "a pointer"; + case 's': case 'p': return "a string"; + case 0: return "end"; + default: return "unparseable format string"; + } +} +static size_t __Pyx_BufFmt_TypeCharToStandardSize(char ch, int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return 2; + case 'i': case 'I': case 'l': case 'L': return 4; + case 'q': case 'Q': return 8; + case 'f': return (is_complex ? 8 : 4); + case 'd': return (is_complex ? 16 : 8); + case 'g': { + PyErr_SetString(PyExc_ValueError, "Python does not define a standard format string size for long double ('g').."); + return 0; + } + case 'O': case 'P': return sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +static size_t __Pyx_BufFmt_TypeCharToNativeSize(char ch, int is_complex) { + switch (ch) { + case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(short); + case 'i': case 'I': return sizeof(int); + case 'l': case 'L': return sizeof(long); + #ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(PY_LONG_LONG); + #endif + case 'f': return sizeof(float) * (is_complex ? 2 : 1); + case 'd': return sizeof(double) * (is_complex ? 2 : 1); + case 'g': return sizeof(long double) * (is_complex ? 2 : 1); + case 'O': case 'P': return sizeof(void*); + default: { + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } + } +} +typedef struct { char c; short x; } __Pyx_st_short; +typedef struct { char c; int x; } __Pyx_st_int; +typedef struct { char c; long x; } __Pyx_st_long; +typedef struct { char c; float x; } __Pyx_st_float; +typedef struct { char c; double x; } __Pyx_st_double; +typedef struct { char c; long double x; } __Pyx_st_longdouble; +typedef struct { char c; void *x; } __Pyx_st_void_p; +#ifdef HAVE_LONG_LONG +typedef struct { char c; PY_LONG_LONG x; } __Pyx_st_longlong; +#endif +static size_t __Pyx_BufFmt_TypeCharToAlignment(char ch, CYTHON_UNUSED int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(__Pyx_st_short) - sizeof(short); + case 'i': case 'I': return sizeof(__Pyx_st_int) - sizeof(int); + case 'l': case 'L': return sizeof(__Pyx_st_long) - sizeof(long); +#ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(__Pyx_st_longlong) - sizeof(PY_LONG_LONG); +#endif + case 'f': return sizeof(__Pyx_st_float) - sizeof(float); + case 'd': return sizeof(__Pyx_st_double) - sizeof(double); + case 'g': return sizeof(__Pyx_st_longdouble) - sizeof(long double); + case 'P': case 'O': return sizeof(__Pyx_st_void_p) - sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +/* These are for computing the padding at the end of the struct to align + on the first member of the struct. This will probably the same as above, + but we don't have any guarantees. + */ +typedef struct { short x; char c; } __Pyx_pad_short; +typedef struct { int x; char c; } __Pyx_pad_int; +typedef struct { long x; char c; } __Pyx_pad_long; +typedef struct { float x; char c; } __Pyx_pad_float; +typedef struct { double x; char c; } __Pyx_pad_double; +typedef struct { long double x; char c; } __Pyx_pad_longdouble; +typedef struct { void *x; char c; } __Pyx_pad_void_p; +#ifdef HAVE_LONG_LONG +typedef struct { PY_LONG_LONG x; char c; } __Pyx_pad_longlong; +#endif +static size_t __Pyx_BufFmt_TypeCharToPadding(char ch, CYTHON_UNUSED int is_complex) { + switch (ch) { + case '?': case 'c': case 'b': case 'B': case 's': case 'p': return 1; + case 'h': case 'H': return sizeof(__Pyx_pad_short) - sizeof(short); + case 'i': case 'I': return sizeof(__Pyx_pad_int) - sizeof(int); + case 'l': case 'L': return sizeof(__Pyx_pad_long) - sizeof(long); +#ifdef HAVE_LONG_LONG + case 'q': case 'Q': return sizeof(__Pyx_pad_longlong) - sizeof(PY_LONG_LONG); +#endif + case 'f': return sizeof(__Pyx_pad_float) - sizeof(float); + case 'd': return sizeof(__Pyx_pad_double) - sizeof(double); + case 'g': return sizeof(__Pyx_pad_longdouble) - sizeof(long double); + case 'P': case 'O': return sizeof(__Pyx_pad_void_p) - sizeof(void*); + default: + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } +} +static char __Pyx_BufFmt_TypeCharToGroup(char ch, int is_complex) { + switch (ch) { + case 'c': + return 'H'; + case 'b': case 'h': case 'i': + case 'l': case 'q': case 's': case 'p': + return 'I'; + case 'B': case 'H': case 'I': case 'L': case 'Q': + return 'U'; + case 'f': case 'd': case 'g': + return (is_complex ? 'C' : 'R'); + case 'O': + return 'O'; + case 'P': + return 'P'; + default: { + __Pyx_BufFmt_RaiseUnexpectedChar(ch); + return 0; + } + } +} +static void __Pyx_BufFmt_RaiseExpected(__Pyx_BufFmt_Context* ctx) { + if (ctx->head == NULL || ctx->head->field == &ctx->root) { + const char* expected; + const char* quote; + if (ctx->head == NULL) { + expected = "end"; + quote = ""; + } else { + expected = ctx->head->field->type->name; + quote = "'"; + } + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch, expected %s%s%s but got %s", + quote, expected, quote, + __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex)); + } else { + __Pyx_StructField* field = ctx->head->field; + __Pyx_StructField* parent = (ctx->head - 1)->field; + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch, expected '%s' but got %s in '%s.%s'", + field->type->name, __Pyx_BufFmt_DescribeTypeChar(ctx->enc_type, ctx->is_complex), + parent->type->name, field->name); + } +} +static int __Pyx_BufFmt_ProcessTypeChunk(__Pyx_BufFmt_Context* ctx) { + char group; + size_t size, offset, arraysize = 1; + if (ctx->enc_type == 0) return 0; + if (ctx->head->field->type->arraysize[0]) { + int i, ndim = 0; + if (ctx->enc_type == 's' || ctx->enc_type == 'p') { + ctx->is_valid_array = ctx->head->field->type->ndim == 1; + ndim = 1; + if (ctx->enc_count != ctx->head->field->type->arraysize[0]) { + PyErr_Format(PyExc_ValueError, + "Expected a dimension of size %zu, got %zu", + ctx->head->field->type->arraysize[0], ctx->enc_count); + return -1; + } + } + if (!ctx->is_valid_array) { + PyErr_Format(PyExc_ValueError, "Expected %d dimensions, got %d", + ctx->head->field->type->ndim, ndim); + return -1; + } + for (i = 0; i < ctx->head->field->type->ndim; i++) { + arraysize *= ctx->head->field->type->arraysize[i]; + } + ctx->is_valid_array = 0; + ctx->enc_count = 1; + } + group = __Pyx_BufFmt_TypeCharToGroup(ctx->enc_type, ctx->is_complex); + do { + __Pyx_StructField* field = ctx->head->field; + __Pyx_TypeInfo* type = field->type; + if (ctx->enc_packmode == '@' || ctx->enc_packmode == '^') { + size = __Pyx_BufFmt_TypeCharToNativeSize(ctx->enc_type, ctx->is_complex); + } else { + size = __Pyx_BufFmt_TypeCharToStandardSize(ctx->enc_type, ctx->is_complex); + } + if (ctx->enc_packmode == '@') { + size_t align_at = __Pyx_BufFmt_TypeCharToAlignment(ctx->enc_type, ctx->is_complex); + size_t align_mod_offset; + if (align_at == 0) return -1; + align_mod_offset = ctx->fmt_offset % align_at; + if (align_mod_offset > 0) ctx->fmt_offset += align_at - align_mod_offset; + if (ctx->struct_alignment == 0) + ctx->struct_alignment = __Pyx_BufFmt_TypeCharToPadding(ctx->enc_type, + ctx->is_complex); + } + if (type->size != size || type->typegroup != group) { + if (type->typegroup == 'C' && type->fields != NULL) { + size_t parent_offset = ctx->head->parent_offset + field->offset; + ++ctx->head; + ctx->head->field = type->fields; + ctx->head->parent_offset = parent_offset; + continue; + } + if ((type->typegroup == 'H' || group == 'H') && type->size == size) { + } else { + __Pyx_BufFmt_RaiseExpected(ctx); + return -1; + } + } + offset = ctx->head->parent_offset + field->offset; + if (ctx->fmt_offset != offset) { + PyErr_Format(PyExc_ValueError, + "Buffer dtype mismatch; next field is at offset %" CYTHON_FORMAT_SSIZE_T "d but %" CYTHON_FORMAT_SSIZE_T "d expected", + (Py_ssize_t)ctx->fmt_offset, (Py_ssize_t)offset); + return -1; + } + ctx->fmt_offset += size; + if (arraysize) + ctx->fmt_offset += (arraysize - 1) * size; + --ctx->enc_count; + while (1) { + if (field == &ctx->root) { + ctx->head = NULL; + if (ctx->enc_count != 0) { + __Pyx_BufFmt_RaiseExpected(ctx); + return -1; + } + break; + } + ctx->head->field = ++field; + if (field->type == NULL) { + --ctx->head; + field = ctx->head->field; + continue; + } else if (field->type->typegroup == 'S') { + size_t parent_offset = ctx->head->parent_offset + field->offset; + if (field->type->fields->type == NULL) continue; + field = field->type->fields; + ++ctx->head; + ctx->head->field = field; + ctx->head->parent_offset = parent_offset; + break; + } else { + break; + } + } + } while (ctx->enc_count); + ctx->enc_type = 0; + ctx->is_complex = 0; + return 0; +} +static PyObject * +__pyx_buffmt_parse_array(__Pyx_BufFmt_Context* ctx, const char** tsp) +{ + const char *ts = *tsp; + int i = 0, number; + int ndim = ctx->head->field->type->ndim; +; + ++ts; + if (ctx->new_count != 1) { + PyErr_SetString(PyExc_ValueError, + "Cannot handle repeated arrays in format string"); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + while (*ts && *ts != ')') { + switch (*ts) { + case ' ': case '\f': case '\r': case '\n': case '\t': case '\v': continue; + default: break; + } + number = __Pyx_BufFmt_ExpectNumber(&ts); + if (number == -1) return NULL; + if (i < ndim && (size_t) number != ctx->head->field->type->arraysize[i]) + return PyErr_Format(PyExc_ValueError, + "Expected a dimension of size %zu, got %d", + ctx->head->field->type->arraysize[i], number); + if (*ts != ',' && *ts != ')') + return PyErr_Format(PyExc_ValueError, + "Expected a comma in format string, got '%c'", *ts); + if (*ts == ',') ts++; + i++; + } + if (i != ndim) + return PyErr_Format(PyExc_ValueError, "Expected %d dimension(s), got %d", + ctx->head->field->type->ndim, i); + if (!*ts) { + PyErr_SetString(PyExc_ValueError, + "Unexpected end of format string, expected ')'"); + return NULL; + } + ctx->is_valid_array = 1; + ctx->new_count = 1; + *tsp = ++ts; + return Py_None; +} +static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts) { + int got_Z = 0; + while (1) { + switch(*ts) { + case 0: + if (ctx->enc_type != 0 && ctx->head == NULL) { + __Pyx_BufFmt_RaiseExpected(ctx); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + if (ctx->head != NULL) { + __Pyx_BufFmt_RaiseExpected(ctx); + return NULL; + } + return ts; + case ' ': + case '\r': + case '\n': + ++ts; + break; + case '<': + if (!__Pyx_Is_Little_Endian()) { + PyErr_SetString(PyExc_ValueError, "Little-endian buffer not supported on big-endian compiler"); + return NULL; + } + ctx->new_packmode = '='; + ++ts; + break; + case '>': + case '!': + if (__Pyx_Is_Little_Endian()) { + PyErr_SetString(PyExc_ValueError, "Big-endian buffer not supported on little-endian compiler"); + return NULL; + } + ctx->new_packmode = '='; + ++ts; + break; + case '=': + case '@': + case '^': + ctx->new_packmode = *ts++; + break; + case 'T': + { + const char* ts_after_sub; + size_t i, struct_count = ctx->new_count; + size_t struct_alignment = ctx->struct_alignment; + ctx->new_count = 1; + ++ts; + if (*ts != '{') { + PyErr_SetString(PyExc_ValueError, "Buffer acquisition: Expected '{' after 'T'"); + return NULL; + } + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_type = 0; + ctx->enc_count = 0; + ctx->struct_alignment = 0; + ++ts; + ts_after_sub = ts; + for (i = 0; i != struct_count; ++i) { + ts_after_sub = __Pyx_BufFmt_CheckString(ctx, ts); + if (!ts_after_sub) return NULL; + } + ts = ts_after_sub; + if (struct_alignment) ctx->struct_alignment = struct_alignment; + } + break; + case '}': + { + size_t alignment = ctx->struct_alignment; + ++ts; + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_type = 0; + if (alignment && ctx->fmt_offset % alignment) { + ctx->fmt_offset += alignment - (ctx->fmt_offset % alignment); + } + } + return ts; + case 'x': + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->fmt_offset += ctx->new_count; + ctx->new_count = 1; + ctx->enc_count = 0; + ctx->enc_type = 0; + ctx->enc_packmode = ctx->new_packmode; + ++ts; + break; + case 'Z': + got_Z = 1; + ++ts; + if (*ts != 'f' && *ts != 'd' && *ts != 'g') { + __Pyx_BufFmt_RaiseUnexpectedChar('Z'); + return NULL; + } + CYTHON_FALLTHROUGH; + case 'c': case 'b': case 'B': case 'h': case 'H': case 'i': case 'I': + case 'l': case 'L': case 'q': case 'Q': + case 'f': case 'd': case 'g': + case 'O': case 'p': + if (ctx->enc_type == *ts && got_Z == ctx->is_complex && + ctx->enc_packmode == ctx->new_packmode) { + ctx->enc_count += ctx->new_count; + ctx->new_count = 1; + got_Z = 0; + ++ts; + break; + } + CYTHON_FALLTHROUGH; + case 's': + if (__Pyx_BufFmt_ProcessTypeChunk(ctx) == -1) return NULL; + ctx->enc_count = ctx->new_count; + ctx->enc_packmode = ctx->new_packmode; + ctx->enc_type = *ts; + ctx->is_complex = got_Z; + ++ts; + ctx->new_count = 1; + got_Z = 0; + break; + case ':': + ++ts; + while(*ts != ':') ++ts; + ++ts; + break; + case '(': + if (!__pyx_buffmt_parse_array(ctx, &ts)) return NULL; + break; + default: + { + int number = __Pyx_BufFmt_ExpectNumber(&ts); + if (number == -1) return NULL; + ctx->new_count = (size_t)number; + } + } + } +} + +/* TypeInfoCompare */ + static int +__pyx_typeinfo_cmp(__Pyx_TypeInfo *a, __Pyx_TypeInfo *b) +{ + int i; + if (!a || !b) + return 0; + if (a == b) + return 1; + if (a->size != b->size || a->typegroup != b->typegroup || + a->is_unsigned != b->is_unsigned || a->ndim != b->ndim) { + if (a->typegroup == 'H' || b->typegroup == 'H') { + return a->size == b->size; + } else { + return 0; + } + } + if (a->ndim) { + for (i = 0; i < a->ndim; i++) + if (a->arraysize[i] != b->arraysize[i]) + return 0; + } + if (a->typegroup == 'S') { + if (a->flags != b->flags) + return 0; + if (a->fields || b->fields) { + if (!(a->fields && b->fields)) + return 0; + for (i = 0; a->fields[i].type && b->fields[i].type; i++) { + __Pyx_StructField *field_a = a->fields + i; + __Pyx_StructField *field_b = b->fields + i; + if (field_a->offset != field_b->offset || + !__pyx_typeinfo_cmp(field_a->type, field_b->type)) + return 0; + } + return !a->fields[i].type && !b->fields[i].type; + } + } + return 1; +} + +/* MemviewSliceValidateAndInit */ + static int +__pyx_check_strides(Py_buffer *buf, int dim, int ndim, int spec) +{ + if (buf->shape[dim] <= 1) + return 1; + if (buf->strides) { + if (spec & __Pyx_MEMVIEW_CONTIG) { + if (spec & (__Pyx_MEMVIEW_PTR|__Pyx_MEMVIEW_FULL)) { + if (buf->strides[dim] != sizeof(void *)) { + PyErr_Format(PyExc_ValueError, + "Buffer is not indirectly contiguous " + "in dimension %d.", dim); + goto fail; + } + } else if (buf->strides[dim] != buf->itemsize) { + PyErr_SetString(PyExc_ValueError, + "Buffer and memoryview are not contiguous " + "in the same dimension."); + goto fail; + } + } + if (spec & __Pyx_MEMVIEW_FOLLOW) { + Py_ssize_t stride = buf->strides[dim]; + if (stride < 0) + stride = -stride; + if (stride < buf->itemsize) { + PyErr_SetString(PyExc_ValueError, + "Buffer and memoryview are not contiguous " + "in the same dimension."); + goto fail; + } + } + } else { + if (spec & __Pyx_MEMVIEW_CONTIG && dim != ndim - 1) { + PyErr_Format(PyExc_ValueError, + "C-contiguous buffer is not contiguous in " + "dimension %d", dim); + goto fail; + } else if (spec & (__Pyx_MEMVIEW_PTR)) { + PyErr_Format(PyExc_ValueError, + "C-contiguous buffer is not indirect in " + "dimension %d", dim); + goto fail; + } else if (buf->suboffsets) { + PyErr_SetString(PyExc_ValueError, + "Buffer exposes suboffsets but no strides"); + goto fail; + } + } + return 1; +fail: + return 0; +} +static int +__pyx_check_suboffsets(Py_buffer *buf, int dim, CYTHON_UNUSED int ndim, int spec) +{ + if (spec & __Pyx_MEMVIEW_DIRECT) { + if (buf->suboffsets && buf->suboffsets[dim] >= 0) { + PyErr_Format(PyExc_ValueError, + "Buffer not compatible with direct access " + "in dimension %d.", dim); + goto fail; + } + } + if (spec & __Pyx_MEMVIEW_PTR) { + if (!buf->suboffsets || (buf->suboffsets && buf->suboffsets[dim] < 0)) { + PyErr_Format(PyExc_ValueError, + "Buffer is not indirectly accessible " + "in dimension %d.", dim); + goto fail; + } + } + return 1; +fail: + return 0; +} +static int +__pyx_verify_contig(Py_buffer *buf, int ndim, int c_or_f_flag) +{ + int i; + if (c_or_f_flag & __Pyx_IS_F_CONTIG) { + Py_ssize_t stride = 1; + for (i = 0; i < ndim; i++) { + if (stride * buf->itemsize != buf->strides[i] && + buf->shape[i] > 1) + { + PyErr_SetString(PyExc_ValueError, + "Buffer not fortran contiguous."); + goto fail; + } + stride = stride * buf->shape[i]; + } + } else if (c_or_f_flag & __Pyx_IS_C_CONTIG) { + Py_ssize_t stride = 1; + for (i = ndim - 1; i >- 1; i--) { + if (stride * buf->itemsize != buf->strides[i] && + buf->shape[i] > 1) { + PyErr_SetString(PyExc_ValueError, + "Buffer not C contiguous."); + goto fail; + } + stride = stride * buf->shape[i]; + } + } + return 1; +fail: + return 0; +} +static int __Pyx_ValidateAndInit_memviewslice( + int *axes_specs, + int c_or_f_flag, + int buf_flags, + int ndim, + __Pyx_TypeInfo *dtype, + __Pyx_BufFmt_StackElem stack[], + __Pyx_memviewslice *memviewslice, + PyObject *original_obj) +{ + struct __pyx_memoryview_obj *memview, *new_memview; + __Pyx_RefNannyDeclarations + Py_buffer *buf; + int i, spec = 0, retval = -1; + __Pyx_BufFmt_Context ctx; + int from_memoryview = __pyx_memoryview_check(original_obj); + __Pyx_RefNannySetupContext("ValidateAndInit_memviewslice", 0); + if (from_memoryview && __pyx_typeinfo_cmp(dtype, ((struct __pyx_memoryview_obj *) + original_obj)->typeinfo)) { + memview = (struct __pyx_memoryview_obj *) original_obj; + new_memview = NULL; + } else { + memview = (struct __pyx_memoryview_obj *) __pyx_memoryview_new( + original_obj, buf_flags, 0, dtype); + new_memview = memview; + if (unlikely(!memview)) + goto fail; + } + buf = &memview->view; + if (buf->ndim != ndim) { + PyErr_Format(PyExc_ValueError, + "Buffer has wrong number of dimensions (expected %d, got %d)", + ndim, buf->ndim); + goto fail; + } + if (new_memview) { + __Pyx_BufFmt_Init(&ctx, stack, dtype); + if (!__Pyx_BufFmt_CheckString(&ctx, buf->format)) goto fail; + } + if ((unsigned) buf->itemsize != dtype->size) { + PyErr_Format(PyExc_ValueError, + "Item size of buffer (%" CYTHON_FORMAT_SSIZE_T "u byte%s) " + "does not match size of '%s' (%" CYTHON_FORMAT_SSIZE_T "u byte%s)", + buf->itemsize, + (buf->itemsize > 1) ? "s" : "", + dtype->name, + dtype->size, + (dtype->size > 1) ? "s" : ""); + goto fail; + } + for (i = 0; i < ndim; i++) { + spec = axes_specs[i]; + if (!__pyx_check_strides(buf, i, ndim, spec)) + goto fail; + if (!__pyx_check_suboffsets(buf, i, ndim, spec)) + goto fail; + } + if (buf->strides && !__pyx_verify_contig(buf, ndim, c_or_f_flag)) + goto fail; + if (unlikely(__Pyx_init_memviewslice(memview, ndim, memviewslice, + new_memview != NULL) == -1)) { + goto fail; + } + retval = 0; + goto no_fail; +fail: + Py_XDECREF(new_memview); + retval = -1; +no_fail: + __Pyx_RefNannyFinishContext(); + return retval; +} + +/* ObjectToMemviewSlice */ + static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dsds_double(PyObject *obj, int writable_flag) { + __Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } }; + __Pyx_BufFmt_StackElem stack[1]; + int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_STRIDED), (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_STRIDED) }; + int retcode; + if (obj == Py_None) { + result.memview = (struct __pyx_memoryview_obj *) Py_None; + return result; + } + retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, 0, + PyBUF_RECORDS_RO | writable_flag, 2, + &__Pyx_TypeInfo_double, stack, + &result, obj); + if (unlikely(retcode == -1)) + goto __pyx_fail; + return result; +__pyx_fail: + result.memview = NULL; + result.data = NULL; + return result; +} + +/* ObjectToMemviewSlice */ + static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_ds_double(PyObject *obj, int writable_flag) { + __Pyx_memviewslice result = { 0, 0, { 0 }, { 0 }, { 0 } }; + __Pyx_BufFmt_StackElem stack[1]; + int axes_specs[] = { (__Pyx_MEMVIEW_DIRECT | __Pyx_MEMVIEW_STRIDED) }; + int retcode; + if (obj == Py_None) { + result.memview = (struct __pyx_memoryview_obj *) Py_None; + return result; + } + retcode = __Pyx_ValidateAndInit_memviewslice(axes_specs, 0, + PyBUF_RECORDS_RO | writable_flag, 1, + &__Pyx_TypeInfo_double, stack, + &result, obj); + if (unlikely(retcode == -1)) + goto __pyx_fail; + return result; +__pyx_fail: + result.memview = NULL; + result.data = NULL; + return result; +} + +/* CheckBinaryVersion */ + static int __Pyx_check_binary_version(void) { char ctversion[4], rtversion[4]; PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION); PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion()); @@ -21806,88 +39330,8 @@ static int __Pyx_check_binary_version(void) { return 0; } -#ifndef __PYX_HAVE_RT_ImportModule -#define __PYX_HAVE_RT_ImportModule -static PyObject *__Pyx_ImportModule(const char *name) { - PyObject *py_name = 0; - PyObject *py_module = 0; - py_name = __Pyx_PyIdentifier_FromString(name); - if (!py_name) - goto bad; - py_module = PyImport_Import(py_name); - Py_DECREF(py_name); - return py_module; -bad: - Py_XDECREF(py_name); - return 0; -} -#endif - -#ifndef __PYX_HAVE_RT_ImportType -#define __PYX_HAVE_RT_ImportType -static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, - size_t size, int strict) -{ - PyObject *py_module = 0; - PyObject *result = 0; - PyObject *py_name = 0; - char warning[200]; - Py_ssize_t basicsize; -#ifdef Py_LIMITED_API - PyObject *py_basicsize; -#endif - py_module = __Pyx_ImportModule(module_name); - if (!py_module) - goto bad; - py_name = __Pyx_PyIdentifier_FromString(class_name); - if (!py_name) - goto bad; - result = PyObject_GetAttr(py_module, py_name); - Py_DECREF(py_name); - py_name = 0; - Py_DECREF(py_module); - py_module = 0; - if (!result) - goto bad; - if (!PyType_Check(result)) { - PyErr_Format(PyExc_TypeError, - "%.200s.%.200s is not a type object", - module_name, class_name); - goto bad; - } -#ifndef Py_LIMITED_API - basicsize = ((PyTypeObject *)result)->tp_basicsize; -#else - py_basicsize = PyObject_GetAttrString(result, "__basicsize__"); - if (!py_basicsize) - goto bad; - basicsize = PyLong_AsSsize_t(py_basicsize); - Py_DECREF(py_basicsize); - py_basicsize = 0; - if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred()) - goto bad; -#endif - if (!strict && (size_t)basicsize > size) { - PyOS_snprintf(warning, sizeof(warning), - "%s.%s size changed, may indicate binary incompatibility", - module_name, class_name); - if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad; - } - else if ((size_t)basicsize != size) { - PyErr_Format(PyExc_ValueError, - "%.200s.%.200s has the wrong size, try recompiling", - module_name, class_name); - goto bad; - } - return (PyTypeObject *)result; -bad: - Py_XDECREF(py_module); - Py_XDECREF(result); - return NULL; -} -#endif - -static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { +/* InitStrings */ + static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { while (t->p) { #if PY_MAJOR_VERSION < 3 if (t->is_unicode) { @@ -21912,6 +39356,8 @@ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { #endif if (!*t->p) return -1; + if (PyObject_Hash(*t->p) == -1) + return -1; ++t; } return 0; @@ -21920,53 +39366,60 @@ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) { return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str)); } -static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) { +static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) { Py_ssize_t ignore; return __Pyx_PyObject_AsStringAndSize(o, &ignore); } -static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT - if ( -#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII - __Pyx_sys_getdefaultencoding_not_ascii && -#endif - PyUnicode_Check(o)) { -#if PY_VERSION_HEX < 0x03030000 - char* defenc_c; - PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); - if (!defenc) return NULL; - defenc_c = PyBytes_AS_STRING(defenc); +#if !CYTHON_PEP393_ENABLED +static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { + char* defenc_c; + PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL); + if (!defenc) return NULL; + defenc_c = PyBytes_AS_STRING(defenc); #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII - { - char* end = defenc_c + PyBytes_GET_SIZE(defenc); - char* c; - for (c = defenc_c; c < end; c++) { - if ((unsigned char) (*c) >= 128) { - PyUnicode_AsASCIIString(o); - return NULL; - } + { + char* end = defenc_c + PyBytes_GET_SIZE(defenc); + char* c; + for (c = defenc_c; c < end; c++) { + if ((unsigned char) (*c) >= 128) { + PyUnicode_AsASCIIString(o); + return NULL; } } + } #endif - *length = PyBytes_GET_SIZE(defenc); - return defenc_c; + *length = PyBytes_GET_SIZE(defenc); + return defenc_c; +} #else - if (__Pyx_PyUnicode_READY(o) == -1) return NULL; +static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) { + if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL; #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII - if (PyUnicode_IS_ASCII(o)) { - *length = PyUnicode_GET_LENGTH(o); - return PyUnicode_AsUTF8(o); - } else { - PyUnicode_AsASCIIString(o); - return NULL; - } + if (likely(PyUnicode_IS_ASCII(o))) { + *length = PyUnicode_GET_LENGTH(o); + return PyUnicode_AsUTF8(o); + } else { + PyUnicode_AsASCIIString(o); + return NULL; + } #else - return PyUnicode_AsUTF8AndSize(o, length); + return PyUnicode_AsUTF8AndSize(o, length); +#endif +} #endif #endif +static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) { +#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT + if ( +#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII + __Pyx_sys_getdefaultencoding_not_ascii && +#endif + PyUnicode_Check(o)) { + return __Pyx_PyUnicode_AsStringAndSize(o, length); } else #endif -#if !CYTHON_COMPILING_IN_PYPY +#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE)) if (PyByteArray_Check(o)) { *length = PyByteArray_GET_SIZE(o); return PyByteArray_AS_STRING(o); @@ -21987,43 +39440,67 @@ static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { if (is_true | (x == Py_False) | (x == Py_None)) return is_true; else return PyObject_IsTrue(x); } -static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { +static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) { +#if PY_MAJOR_VERSION >= 3 + if (PyLong_Check(result)) { + if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1, + "__int__ returned non-int (type %.200s). " + "The ability to return an instance of a strict subclass of int " + "is deprecated, and may be removed in a future version of Python.", + Py_TYPE(result)->tp_name)) { + Py_DECREF(result); + return NULL; + } + return result; + } +#endif + PyErr_Format(PyExc_TypeError, + "__%.4s__ returned non-%.4s (type %.200s)", + type_name, type_name, Py_TYPE(result)->tp_name); + Py_DECREF(result); + return NULL; +} +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) { +#if CYTHON_USE_TYPE_SLOTS PyNumberMethods *m; +#endif const char *name = NULL; PyObject *res = NULL; #if PY_MAJOR_VERSION < 3 - if (PyInt_Check(x) || PyLong_Check(x)) + if (likely(PyInt_Check(x) || PyLong_Check(x))) #else - if (PyLong_Check(x)) + if (likely(PyLong_Check(x))) #endif - return Py_INCREF(x), x; + return __Pyx_NewRef(x); +#if CYTHON_USE_TYPE_SLOTS m = Py_TYPE(x)->tp_as_number; -#if PY_MAJOR_VERSION < 3 + #if PY_MAJOR_VERSION < 3 if (m && m->nb_int) { name = "int"; - res = PyNumber_Int(x); + res = m->nb_int(x); } else if (m && m->nb_long) { name = "long"; - res = PyNumber_Long(x); + res = m->nb_long(x); } -#else - if (m && m->nb_int) { + #else + if (likely(m && m->nb_int)) { name = "int"; - res = PyNumber_Long(x); + res = m->nb_int(x); + } + #endif +#else + if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) { + res = PyNumber_Int(x); } #endif - if (res) { + if (likely(res)) { #if PY_MAJOR_VERSION < 3 - if (!PyInt_Check(res) && !PyLong_Check(res)) { + if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) { #else - if (!PyLong_Check(res)) { + if (unlikely(!PyLong_CheckExact(res))) { #endif - PyErr_Format(PyExc_TypeError, - "__%.4s__ returned non-%.4s (type %.200s)", - name, name, Py_TYPE(res)->tp_name); - Py_DECREF(res); - return NULL; + return __Pyx_PyNumber_IntOrLongWrongResultType(res, name); } } else if (!PyErr_Occurred()) { @@ -22036,18 +39513,55 @@ static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { Py_ssize_t ival; PyObject *x; #if PY_MAJOR_VERSION < 3 - if (likely(PyInt_CheckExact(b))) - return PyInt_AS_LONG(b); + if (likely(PyInt_CheckExact(b))) { + if (sizeof(Py_ssize_t) >= sizeof(long)) + return PyInt_AS_LONG(b); + else + return PyInt_AsSsize_t(x); + } #endif if (likely(PyLong_CheckExact(b))) { - #if CYTHON_COMPILING_IN_CPYTHON && PY_MAJOR_VERSION >= 3 - #if CYTHON_USE_PYLONG_INTERNALS - switch (Py_SIZE(b)) { - case -1: return -(sdigit)((PyLongObject*)b)->ob_digit[0]; - case 0: return 0; - case 1: return ((PyLongObject*)b)->ob_digit[0]; - } - #endif + #if CYTHON_USE_PYLONG_INTERNALS + const digit* digits = ((PyLongObject*)b)->ob_digit; + const Py_ssize_t size = Py_SIZE(b); + if (likely(__Pyx_sst_abs(size) <= 1)) { + ival = likely(size) ? digits[0] : 0; + if (size == -1) ival = -ival; + return ival; + } else { + switch (size) { + case 2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -2: + if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -3: + if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case 4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + case -4: + if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) { + return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0])); + } + break; + } + } #endif return PyLong_AsSsize_t(b); } @@ -22057,6 +39571,9 @@ static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { Py_DECREF(x); return ival; } +static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) { + return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False); +} static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { return PyInt_FromSize_t(ival); } diff --git a/silx/io/specfile.pyx b/silx/io/specfile.pyx index 39e8816..38101b7 100644 --- a/silx/io/specfile.pyx +++ b/silx/io/specfile.pyx @@ -1,6 +1,6 @@ # coding: utf-8 # /*########################################################################## -# Copyright (C) 2016-2017 European Synchrotron Radiation Facility +# Copyright (C) 2016-2018 European Synchrotron Radiation Facility # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal @@ -115,25 +115,11 @@ import sys _logger = logging.getLogger(__name__) -cimport numpy cimport cython from libc.stdlib cimport free cimport specfile_wrapper -# hack to avoid C compiler warnings about unused functions in the NumPy header files -# Sources: Cython test suite. -cdef extern from *: - bint FALSE "0" - void import_array() - void import_umath() - -if FALSE: - import_array() - import_umath() - -numpy.import_array() - SF_ERR_NO_ERRORS = 0 SF_ERR_FILE_OPEN = 2 @@ -654,7 +640,7 @@ cdef class SpecFile(object): str filename def __cinit__(self, filename): - cdef int error = SF_ERR_NO_ERRORS + cdef int error = 0 self.handle = NULL if is_specfile(filename): @@ -890,12 +876,18 @@ cdef class SpecFile(object): int i, j int error = SF_ERR_NO_ERRORS long nlines, ncolumns, regular + double[:, :] ret_array sfdata_error = specfile_wrapper.SfData(self.handle, scan_index + 1, &mydata, &data_info, &error) + if sfdata_error == -1 and not error: + # this has happened in some situations with empty scans (#1759) + _logger.warning("SfData returned -1 without an error." + " Assuming aborted scan.") + self._handle_error(error) if <long>data_info != 0: @@ -907,15 +899,15 @@ cdef class SpecFile(object): ncolumns = 0 regular = 0 - cdef numpy.ndarray ret_array = numpy.empty((nlines, ncolumns), - dtype=numpy.double) + ret_array = numpy.empty((nlines, ncolumns), dtype=numpy.double) + for i in range(nlines): for j in range(ncolumns): ret_array[i, j] = mydata[i][j] specfile_wrapper.freeArrNZ(<void ***>&mydata, nlines) free(data_info) - return ret_array + return numpy.asarray(ret_array) def data_column_by_name(self, scan_index, label): """Returns data column for the specified scan index and column label. @@ -934,6 +926,7 @@ cdef class SpecFile(object): double* data_column long i, nlines int error = SF_ERR_NO_ERRORS + double[:] ret_array label = _string_to_char_star(label) @@ -944,13 +937,19 @@ cdef class SpecFile(object): &error) self._handle_error(error) - cdef numpy.ndarray ret_array = numpy.empty((nlines,), - dtype=numpy.double) + if nlines == -1: + # this can happen on empty scans in some situations (see #1759) + _logger.warning("SfDataColByName returned -1 without an error." + " Assuming aborted scan.") + nlines = 0 + + ret_array = numpy.empty((nlines,), dtype=numpy.double) + for i in range(nlines): ret_array[i] = data_column[i] free(data_column) - return ret_array + return numpy.asarray(ret_array) def scan_header(self, scan_index): """Return list of scan header lines. @@ -1255,6 +1254,7 @@ cdef class SpecFile(object): int error = SF_ERR_NO_ERRORS double* mca_data long len_mca + double[:] ret_array len_mca = specfile_wrapper.SfGetMca(self.handle, scan_index + 1, @@ -1263,10 +1263,10 @@ cdef class SpecFile(object): &error) self._handle_error(error) - cdef numpy.ndarray ret_array = numpy.empty((len_mca,), - dtype=numpy.double) + ret_array = numpy.empty((len_mca,), dtype=numpy.double) + for i in range(len_mca): ret_array[i] = mca_data[i] free(mca_data) - return ret_array + return numpy.asarray(ret_array) diff --git a/silx/io/spech5.py b/silx/io/spech5.py index a112fe0..1b32efd 100644 --- a/silx/io/spech5.py +++ b/silx/io/spech5.py @@ -72,7 +72,7 @@ Specfile data structure exposed by this API: appear in the original file, as a string of lines separated by newline (``\\n``) characters. The title is the content of the ``#S`` scan header line without the leading -``#S`` (e.g ``"1 ascan ss1vo -4.55687 -0.556875 40 0.2"``). +``#S`` and without the scan number (e.g ``"ascan ss1vo -4.55687 -0.556875 40 0.2"``). The start time is converted to ISO8601 format (``"2016-02-23T22:49:05Z"``), if the original date format is standard. diff --git a/silx/io/test/test_fabioh5.py b/silx/io/test/test_fabioh5.py index 5fbf0d0..235a6e3 100644 --- a/silx/io/test/test_fabioh5.py +++ b/silx/io/test/test_fabioh5.py @@ -25,7 +25,7 @@ __authors__ = ["V. Valls"] __license__ = "MIT" -__date__ = "24/02/2018" +__date__ = "02/07/2018" import os import logging @@ -226,7 +226,7 @@ class TestFabioH5(unittest.TestCase): # There is no equality between items self.assertEqual(len(data), len(set(data))) # At worst a float32 - self.assertIn(data.dtype.char, ['d', 'f']) + self.assertIn(data.dtype.kind, ['d', 'f']) self.assertLessEqual(data.dtype.itemsize, 32 / 8) def test_float_64(self): @@ -248,7 +248,7 @@ class TestFabioH5(unittest.TestCase): # There is no equality between items self.assertEqual(len(data), len(set(data))) # At least a float64 - self.assertIn(data.dtype.char, ['d', 'f']) + self.assertIn(data.dtype.kind, ['d', 'f']) self.assertGreaterEqual(data.dtype.itemsize, 64 / 8) def test_ub_matrix(self): @@ -269,14 +269,14 @@ class TestFabioH5(unittest.TestCase): expected = numpy.array([4.08, 4.08, 4.08]) self.assertIsNotNone(d) self.assertEquals(d.shape, (3, )) - self.assertIn(d.dtype.char, ['d', 'f']) + self.assertIn(d.dtype.kind, ['d', 'f']) numpy.testing.assert_array_almost_equal(d[...], expected) d = sample['unit_cell_alphabetagamma'] expected = numpy.array([90.0, 90.0, 90.0]) self.assertIsNotNone(d) self.assertEquals(d.shape, (3, )) - self.assertIn(d.dtype.char, ['d', 'f']) + self.assertIn(d.dtype.kind, ['d', 'f']) numpy.testing.assert_array_almost_equal(d[...], expected) d = sample['ub_matrix'] @@ -285,7 +285,7 @@ class TestFabioH5(unittest.TestCase): [1.08894, 1.08894, 9.28619e-17]]]) self.assertIsNotNone(d) self.assertEquals(d.shape, (1, 3, 3)) - self.assertIn(d.dtype.char, ['d', 'f']) + self.assertIn(d.dtype.kind, ['d', 'f']) numpy.testing.assert_array_almost_equal(d[...], expected) def test_interpretation_mca_edf(self): @@ -510,6 +510,13 @@ class TestFabioH5WithEdf(unittest.TestCase): self.assertNotIn("/scan_0/instrument/detector_0/others/HeaderID", self.h5_image) +if fabio is not None: + class _TestableFrameData(fabioh5.FrameData): + """Allow to test if the full data is reached.""" + def _create_data(self): + raise RuntimeError("Not supposed to be called") + + class TestFabioH5WithFileSeries(unittest.TestCase): @classmethod @@ -566,6 +573,13 @@ class TestFabioH5WithFileSeries(unittest.TestCase): h5_image = fabioh5.File(file_series=file_series) self._testH5Image(h5_image) + def testFrameDataCache(self): + file_series = fabioh5._FileSeries(self.edf_filenames) + reader = fabioh5.FabioReader(file_series=file_series) + frameData = _TestableFrameData("foo", reader) + self.assertEqual(frameData.dtype.kind, "i") + self.assertEqual(frameData.shape, (10, 3, 2)) + def suite(): loadTests = unittest.defaultTestLoader.loadTestsFromTestCase diff --git a/silx/io/test/test_nxdata.py b/silx/io/test/test_nxdata.py index f7ea8a4..fab71dc 100644 --- a/silx/io/test/test_nxdata.py +++ b/silx/io/test/test_nxdata.py @@ -449,6 +449,22 @@ class TestLegacyNXdata(unittest.TestCase): self.assertTrue(numpy.array_equal(nxd.axes[1], numpy.arange(6))) + def testAsciiUndefinedAxesAttrs(self): + """Some files may not be using utf8 for str attrs""" + g = self.h5f.create_group("bytes_attrs") + g.attrs["NX_class"] = b"NXdata" + g.attrs["signal"] = b"image0" + g.attrs["axes"] = b"yaxis", b"." + + g.create_dataset("image0", + data=numpy.arange(4 * 6).reshape((4, 6))) + g.create_dataset("yaxis", + data=numpy.arange(4)) + + nxd = nxdata.NXdata(self.h5f["bytes_attrs"]) + self.assertEqual(nxd.axes_dataset_names, + ["yaxis", None]) + class TestSaveNXdata(unittest.TestCase): def setUp(self): diff --git a/silx/io/utils.py b/silx/io/utils.py index be19fdb..5b0de54 100644 --- a/silx/io/utils.py +++ b/silx/io/utils.py @@ -25,7 +25,7 @@ __authors__ = ["P. Knobel", "V. Valls"] __license__ = "MIT" -__date__ = "14/02/2018" +__date__ = "18/04/2018" import numpy import os.path @@ -86,8 +86,8 @@ def supported_extensions(flat_formats=True): """ formats = {} if h5py is not None: - formats["HDF5 files"] = set(["*.h5", "*.hdf"]) - formats["NeXus files"] = set(["*.nx", "*.nxs", "*.h5", "*.hdf"]) + formats["HDF5 files"] = set(["*.h5", "*.hdf", "*.hdf5"]) + formats["NeXus files"] = set(["*.nx", "*.nxs", "*.h5", "*.hdf", "*.hdf5"]) formats["NeXus layout from spec files"] = set(["*.dat", "*.spec", "*.mca"]) if flat_formats: try: |