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Diffstat (limited to 'silx/math/fit/test/test_peaks.py')
| -rw-r--r-- | silx/math/fit/test/test_peaks.py | 146 |
1 files changed, 0 insertions, 146 deletions
diff --git a/silx/math/fit/test/test_peaks.py b/silx/math/fit/test/test_peaks.py deleted file mode 100644 index 17eb75d..0000000 --- a/silx/math/fit/test/test_peaks.py +++ /dev/null @@ -1,146 +0,0 @@ -# coding: utf-8 -# /*########################################################################## -# Copyright (C) 2016 European Synchrotron Radiation Facility -# -# Permission is hereby granted, free of charge, to any person obtaining a copy -# of this software and associated documentation files (the "Software"), to deal -# in the Software without restriction, including without limitation the rights -# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell -# copies of the Software, and to permit persons to whom the Software is -# furnished to do so, subject to the following conditions: -# -# The above copyright notice and this permission notice shall be included in -# all copies or substantial portions of the Software. -# -# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR -# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, -# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE -# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER -# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, -# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN -# THE SOFTWARE. -# -# ############################################################################*/ -""" -Tests for peaks module -""" - -import unittest -import numpy -import math - -from silx.math.fit import functions -from silx.math.fit import peaks - -class Test_peak_search(unittest.TestCase): - """ - Unit tests of peak_search on various types of multi-peak functions. - """ - def setUp(self): - self.x = numpy.arange(5000) - # (height1, center1, fwhm1, ...) - self.h_c_fwhm = (50, 500, 100, - 50, 600, 80, - 20, 2000, 100, - 50, 2250, 110, - 40, 3000, 99, - 23, 4980, 80) - # (height1, center1, fwhm1, eta1 ...) - self.h_c_fwhm_eta = (50, 500, 100, 0.4, - 50, 600, 80, 0.5, - 20, 2000, 100, 0.6, - 50, 2250, 110, 0.7, - 40, 3000, 99, 0.8, - 23, 4980, 80, 0.3,) - # (height1, center1, fwhm11, fwhm21, ...) - self.h_c_fwhm_fwhm = (50, 500, 100, 85, - 50, 600, 80, 110, - 20, 2000, 100, 100, - 50, 2250, 110, 99, - 40, 3000, 99, 110, - 23, 4980, 80, 80,) - # (height1, center1, fwhm11, fwhm21, eta1 ...) - self.h_c_fwhm_fwhm_eta = (50, 500, 100, 85, 0.4, - 50, 600, 80, 110, 0.5, - 20, 2000, 100, 100, 0.6, - 50, 2250, 110, 99, 0.7, - 40, 3000, 99, 110, 0.8, - 23, 4980, 80, 80, 0.3,) - # (area1, center1, fwhm1, ...) - self.a_c_fwhm = (2550, 500, 100, - 2000, 600, 80, - 500, 2000, 100, - 4000, 2250, 110, - 2300, 3000, 99, - 3333, 4980, 80) - # (area1, center1, fwhm1, eta1 ...) - self.a_c_fwhm_eta = (500, 500, 100, 0.4, - 500, 600, 80, 0.5, - 200, 2000, 100, 0.6, - 500, 2250, 110, 0.7, - 400, 3000, 99, 0.8, - 230, 4980, 80, 0.3,) - # (area, position, fwhm, st_area_r, st_slope_r, lt_area_r, lt_slope_r, step_height_r) - self.hypermet_params = (1000, 500, 200, 0.2, 100, 0.3, 100, 0.05, - 1000, 1000, 200, 0.2, 100, 0.3, 100, 0.05, - 1000, 2000, 200, 0.2, 100, 0.3, 100, 0.05, - 1000, 2350, 200, 0.2, 100, 0.3, 100, 0.05, - 1000, 3000, 200, 0.2, 100, 0.3, 100, 0.05, - 1000, 4900, 200, 0.2, 100, 0.3, 100, 0.05,) - - - def tearDown(self): - pass - - def get_peaks(self, function, params): - """ - - :param function: Multi-peak function - :param params: Parameter for this function - :return: list of (peak, relevance) tuples - """ - y = function(self.x, *params) - return peaks.peak_search(y=y, fwhm=100, relevance_info=True) - - def testPeakSearch_various_functions(self): - """Run peak search on a variety of synthetic functions, and - check that result falls within +-25 samples of the actual peak - (reasonable delta considering a fwhm of ~100 samples) and effects - of overlapping peaks).""" - f_p = ((functions.sum_gauss, self.h_c_fwhm ), - (functions.sum_lorentz, self.h_c_fwhm), - (functions.sum_pvoigt, self.h_c_fwhm_eta), - (functions.sum_splitgauss, self.h_c_fwhm_fwhm), - (functions.sum_splitlorentz, self.h_c_fwhm_fwhm), - (functions.sum_splitpvoigt, self.h_c_fwhm_fwhm_eta), - (functions.sum_agauss, self.a_c_fwhm), - (functions.sum_fastagauss, self.a_c_fwhm), - (functions.sum_alorentz, self.a_c_fwhm), - (functions.sum_apvoigt, self.a_c_fwhm_eta), - (functions.sum_ahypermet, self.hypermet_params), - (functions.sum_fastahypermet, self.hypermet_params),) - - for function, params in f_p: - peaks = self.get_peaks(function, params) - - self.assertEqual(len(peaks), 6, - "Wrong number of peaks detected") - - for i in range(6): - theoretical_peak_index = params[i*(len(params)//6) + 1] - found_peak_index = peaks[i][0] - self.assertLess(abs(found_peak_index - theoretical_peak_index), 25) - - -test_cases = (Test_peak_search,) - -def suite(): - loader = unittest.defaultTestLoader - test_suite = unittest.TestSuite() - for test_class in test_cases: - tests = loader.loadTestsFromTestCase(test_class) - test_suite.addTests(tests) - return test_suite - -if __name__ == '__main__': - unittest.main(defaultTest="suite") |