diff options
Diffstat (limited to 'silx/math/fit')
| -rw-r--r-- | silx/math/fit/filters.c (renamed from silx/math/fit/filters/filters.c) | 11128 | ||||
| -rw-r--r-- | silx/math/fit/filters.pyx (renamed from silx/math/fit/filters/filters.pyx) | 3 | ||||
| -rw-r--r-- | silx/math/fit/filters_wrapper.pxd (renamed from silx/math/fit/filters/filters_wrapper.pxd) | 0 | ||||
| -rw-r--r-- | silx/math/fit/fittheories.py | 3 | ||||
| -rw-r--r-- | silx/math/fit/functions.c (renamed from silx/math/fit/functions/functions.c) | 16233 | ||||
| -rw-r--r-- | silx/math/fit/functions.pyx (renamed from silx/math/fit/functions/functions.pyx) | 41 | ||||
| -rw-r--r-- | silx/math/fit/functions_wrapper.pxd (renamed from silx/math/fit/functions/functions_wrapper.pxd) | 0 | ||||
| -rw-r--r-- | silx/math/fit/leastsq.py | 3 | ||||
| -rw-r--r-- | silx/math/fit/peaks.c (renamed from silx/math/fit/peaks/peaks.c) | 9310 | ||||
| -rw-r--r-- | silx/math/fit/peaks.pyx (renamed from silx/math/fit/peaks/peaks.pyx) | 5 | ||||
| -rw-r--r-- | silx/math/fit/peaks_wrapper.pxd (renamed from silx/math/fit/peaks/peaks_wrapper.pxd) | 0 | ||||
| -rw-r--r-- | silx/math/fit/setup.py | 41 | ||||
| -rw-r--r-- | silx/math/fit/test/test_fit.py | 5 |
13 files changed, 22452 insertions, 14320 deletions
diff --git a/silx/math/fit/filters/filters.c b/silx/math/fit/filters.c index fd83ee7..84fde30 100644 --- a/silx/math/fit/filters/filters.c +++ b/silx/math/fit/filters.c @@ -1,28 +1,32 @@ -/* Generated by Cython 0.21.1 */ +/* Generated by Cython 0.25.2 */ + +/* BEGIN: Cython Metadata +{ + "distutils": { + "depends": [ + "silx/math/fit/filters/include/filters.h" + ], + "include_dirs": [ + "silx/math/fit/filters/include", + "/usr/lib/python2.7/dist-packages/numpy/core/include" + ], + "language": "c" + }, + "module_name": "silx.math.fit.filters" +} +END: Cython Metadata */ #define PY_SSIZE_T_CLEAN -#ifndef CYTHON_USE_PYLONG_INTERNALS -#ifdef PYLONG_BITS_IN_DIGIT -#define CYTHON_USE_PYLONG_INTERNALS 0 -#else -#include "pyconfig.h" -#ifdef PYLONG_BITS_IN_DIGIT -#define CYTHON_USE_PYLONG_INTERNALS 1 -#else -#define CYTHON_USE_PYLONG_INTERNALS 0 -#endif -#endif -#endif #include "Python.h" #ifndef Py_PYTHON_H #error Python headers needed to compile C extensions, please install development version of Python. #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000) #error Cython requires Python 2.6+ or Python 3.2+. #else -#define CYTHON_ABI "0_21_1" +#define CYTHON_ABI "0_25_2" #include <stddef.h> #ifndef offsetof -#define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) + #define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) #endif #if !defined(WIN32) && !defined(MS_WINDOWS) #ifndef __stdcall @@ -41,6 +45,11 @@ #ifndef DL_EXPORT #define DL_EXPORT(t) t #endif +#ifndef HAVE_LONG_LONG + #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000) + #define HAVE_LONG_LONG + #endif +#endif #ifndef PY_LONG_LONG #define PY_LONG_LONG LONG_LONG #endif @@ -48,63 +57,214 @@ #define Py_HUGE_VAL HUGE_VAL #endif #ifdef PYPY_VERSION -#define CYTHON_COMPILING_IN_PYPY 1 -#define CYTHON_COMPILING_IN_CPYTHON 0 + #define CYTHON_COMPILING_IN_PYPY 1 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #undef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 0 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #undef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #undef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 1 + #undef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 0 + #undef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 0 + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 +#elif defined(PYSTON_VERSION) + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 1 + #define CYTHON_COMPILING_IN_CPYTHON 0 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #undef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 0 + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #undef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 0 + #undef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 0 #else -#define CYTHON_COMPILING_IN_PYPY 0 -#define CYTHON_COMPILING_IN_CPYTHON 1 + #define CYTHON_COMPILING_IN_PYPY 0 + #define CYTHON_COMPILING_IN_PYSTON 0 + #define CYTHON_COMPILING_IN_CPYTHON 1 + #ifndef CYTHON_USE_TYPE_SLOTS + #define CYTHON_USE_TYPE_SLOTS 1 + #endif + #if PY_MAJOR_VERSION < 3 + #undef CYTHON_USE_ASYNC_SLOTS + #define CYTHON_USE_ASYNC_SLOTS 0 + #elif !defined(CYTHON_USE_ASYNC_SLOTS) + #define CYTHON_USE_ASYNC_SLOTS 1 + #endif + #if PY_VERSION_HEX < 0x02070000 + #undef CYTHON_USE_PYLONG_INTERNALS + #define CYTHON_USE_PYLONG_INTERNALS 0 + #elif !defined(CYTHON_USE_PYLONG_INTERNALS) + #define CYTHON_USE_PYLONG_INTERNALS 1 + #endif + #ifndef CYTHON_USE_PYLIST_INTERNALS + #define CYTHON_USE_PYLIST_INTERNALS 1 + #endif + #ifndef CYTHON_USE_UNICODE_INTERNALS + #define CYTHON_USE_UNICODE_INTERNALS 1 + #endif + #if PY_VERSION_HEX < 0x030300F0 + #undef CYTHON_USE_UNICODE_WRITER + #define CYTHON_USE_UNICODE_WRITER 0 + #elif !defined(CYTHON_USE_UNICODE_WRITER) + #define CYTHON_USE_UNICODE_WRITER 1 + #endif + #ifndef CYTHON_AVOID_BORROWED_REFS + #define CYTHON_AVOID_BORROWED_REFS 0 + #endif + #ifndef CYTHON_ASSUME_SAFE_MACROS + #define CYTHON_ASSUME_SAFE_MACROS 1 + #endif + #ifndef CYTHON_UNPACK_METHODS + #define CYTHON_UNPACK_METHODS 1 + #endif + #ifndef CYTHON_FAST_THREAD_STATE + #define CYTHON_FAST_THREAD_STATE 1 + #endif + #ifndef CYTHON_FAST_PYCALL + #define CYTHON_FAST_PYCALL 1 + #endif +#endif +#if !defined(CYTHON_FAST_PYCCALL) +#define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1) +#endif +#if CYTHON_USE_PYLONG_INTERNALS + #include "longintrepr.h" + #undef SHIFT + #undef BASE + #undef MASK #endif -#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 -#define Py_OptimizeFlag 0 +#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag) + #define Py_OptimizeFlag 0 #endif #define __PYX_BUILD_PY_SSIZE_T "n" #define CYTHON_FORMAT_SSIZE_T "z" #if PY_MAJOR_VERSION < 3 #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" - #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyClass_Type #else #define __Pyx_BUILTIN_MODULE_NAME "builtins" - #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) \ + #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\ PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos) #define __Pyx_DefaultClassType PyType_Type #endif -#if PY_MAJOR_VERSION >= 3 +#ifndef Py_TPFLAGS_CHECKTYPES #define Py_TPFLAGS_CHECKTYPES 0 +#endif +#ifndef Py_TPFLAGS_HAVE_INDEX #define Py_TPFLAGS_HAVE_INDEX 0 +#endif +#ifndef Py_TPFLAGS_HAVE_NEWBUFFER #define Py_TPFLAGS_HAVE_NEWBUFFER 0 #endif -#if PY_VERSION_HEX < 0x030400a1 && !defined(Py_TPFLAGS_HAVE_FINALIZE) +#ifndef Py_TPFLAGS_HAVE_FINALIZE #define Py_TPFLAGS_HAVE_FINALIZE 0 #endif +#ifndef METH_FASTCALL + #define METH_FASTCALL 0x80 + typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args, + Py_ssize_t nargs, PyObject *kwnames); +#else + #define __Pyx_PyCFunctionFast _PyCFunctionFast +#endif +#if CYTHON_FAST_PYCCALL +#define __Pyx_PyFastCFunction_Check(func)\ + ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST))))) +#else +#define __Pyx_PyFastCFunction_Check(func) 0 +#endif #if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND) #define CYTHON_PEP393_ENABLED 1 - #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ? \ + #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\ 0 : _PyUnicode_Ready((PyObject *)(op))) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u) #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u) #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u) #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u))) #else #define CYTHON_PEP393_ENABLED 0 + #define PyUnicode_1BYTE_KIND 1 + #define PyUnicode_2BYTE_KIND 2 + #define PyUnicode_4BYTE_KIND 4 #define __Pyx_PyUnicode_READY(op) (0) #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u) #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i])) + #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111) #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE)) #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u)) #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i])) + #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch) + #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u)) #endif #if CYTHON_COMPILING_IN_PYPY #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b) #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b) - #define __Pyx_PyFrozenSet_Size(s) PyObject_Size(s) #else #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b) - #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ? \ + #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\ PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b)) - #define __Pyx_PyFrozenSet_Size(s) PySet_Size(s) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains) + #define PyUnicode_Contains(u, s) PySequence_Contains(u, s) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check) + #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format) + #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt) +#endif +#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc) + #define PyObject_Malloc(s) PyMem_Malloc(s) + #define PyObject_Free(p) PyMem_Free(p) + #define PyObject_Realloc(p) PyMem_Realloc(p) +#endif +#if CYTHON_COMPILING_IN_PYSTON + #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno) +#else + #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0) + #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) #endif #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b)) #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b)) @@ -113,6 +273,9 @@ #else #define __Pyx_PyString_Format(a, b) PyString_Format(a, b) #endif +#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII) + #define PyObject_ASCII(o) PyObject_Repr(o) +#endif #if PY_MAJOR_VERSION >= 3 #define PyBaseString_Type PyUnicode_Type #define PyStringObject PyUnicodeObject @@ -131,6 +294,7 @@ #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) #endif #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type) +#define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception) #if PY_MAJOR_VERSION >= 3 #define PyIntObject PyLongObject #define PyInt_Type PyLong_Type @@ -169,16 +333,20 @@ #else #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass) #endif -#ifndef CYTHON_INLINE - #if defined(__GNUC__) - #define CYTHON_INLINE __inline__ - #elif defined(_MSC_VER) - #define CYTHON_INLINE __inline - #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L - #define CYTHON_INLINE inline +#if CYTHON_USE_ASYNC_SLOTS + #if PY_VERSION_HEX >= 0x030500B1 + #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods + #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async) #else - #define CYTHON_INLINE + typedef struct { + unaryfunc am_await; + unaryfunc am_aiter; + unaryfunc am_anext; + } __Pyx_PyAsyncMethodsStruct; + #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved)) #endif +#else + #define __Pyx_PyType_AsAsync(obj) NULL #endif #ifndef CYTHON_RESTRICT #if defined(__GNUC__) @@ -191,26 +359,74 @@ #define CYTHON_RESTRICT #endif #endif +#ifndef CYTHON_UNUSED +# if defined(__GNUC__) +# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +#endif +#ifndef CYTHON_MAYBE_UNUSED_VAR +# if defined(__cplusplus) + template<class T> void CYTHON_MAYBE_UNUSED_VAR( const T& ) { } +# else +# define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x) +# endif +#endif +#ifndef CYTHON_NCP_UNUSED +# if CYTHON_COMPILING_IN_CPYTHON +# define CYTHON_NCP_UNUSED +# else +# define CYTHON_NCP_UNUSED CYTHON_UNUSED +# endif +#endif +#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None) + +#ifndef CYTHON_INLINE + #if defined(__clang__) + #define CYTHON_INLINE __inline__ __attribute__ ((__unused__)) + #elif defined(__GNUC__) + #define CYTHON_INLINE __inline__ + #elif defined(_MSC_VER) + #define CYTHON_INLINE __inline + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_INLINE inline + #else + #define CYTHON_INLINE + #endif +#endif + +#if defined(WIN32) || defined(MS_WINDOWS) + #define _USE_MATH_DEFINES +#endif +#include <math.h> #ifdef NAN #define __PYX_NAN() ((float) NAN) #else static CYTHON_INLINE float __PYX_NAN() { - /* Initialize NaN. The sign is irrelevant, an exponent with all bits 1 and - a nonzero mantissa means NaN. If the first bit in the mantissa is 1, it is - a quiet NaN. */ float value; memset(&value, 0xFF, sizeof(value)); return value; } #endif -#ifdef __cplusplus -template<typename T> -void __Pyx_call_destructor(T* x) { - x->~T(); -} +#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL) +#define __Pyx_truncl trunc +#else +#define __Pyx_truncl truncl #endif +#define __PYX_ERR(f_index, lineno, Ln_error) \ +{ \ + __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \ +} + #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) @@ -227,17 +443,13 @@ void __Pyx_call_destructor(T* x) { #endif #endif -#if defined(WIN32) || defined(MS_WINDOWS) -#define _USE_MATH_DEFINES -#endif -#include <math.h> -#define __PYX_HAVE__filters -#define __PYX_HAVE_API__filters +#define __PYX_HAVE__silx__math__fit__filters +#define __PYX_HAVE_API__silx__math__fit__filters #include "filters.h" #include "pythread.h" -#include "string.h" -#include "stdlib.h" -#include "stdio.h" +#include <string.h> +#include <stdlib.h> +#include <stdio.h> #include "pystate.h" #ifdef _OPENMP #include <omp.h> @@ -247,20 +459,7 @@ void __Pyx_call_destructor(T* x) { #define CYTHON_WITHOUT_ASSERTIONS #endif -#ifndef CYTHON_UNUSED -# if defined(__GNUC__) -# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) -# define CYTHON_UNUSED __attribute__ ((__unused__)) -# else -# define CYTHON_UNUSED -# endif -# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER)) -# define CYTHON_UNUSED __attribute__ ((__unused__)) -# else -# define CYTHON_UNUSED -# endif -#endif -typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; +typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding; const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0 @@ -268,16 +467,34 @@ typedef struct {PyObject **p; char *s; const Py_ssize_t n; const char* encoding; #define __PYX_DEFAULT_STRING_ENCODING "" #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize -#define __Pyx_fits_Py_ssize_t(v, type, is_signed) ( \ - (sizeof(type) < sizeof(Py_ssize_t)) || \ - (sizeof(type) > sizeof(Py_ssize_t) && \ - likely(v < (type)PY_SSIZE_T_MAX || \ - v == (type)PY_SSIZE_T_MAX) && \ - (!is_signed || likely(v > (type)PY_SSIZE_T_MIN || \ - v == (type)PY_SSIZE_T_MIN))) || \ - (sizeof(type) == sizeof(Py_ssize_t) && \ - (is_signed || likely(v < (type)PY_SSIZE_T_MAX || \ +#define __Pyx_uchar_cast(c) ((unsigned char)c) +#define __Pyx_long_cast(x) ((long)x) +#define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\ + (sizeof(type) < sizeof(Py_ssize_t)) ||\ + (sizeof(type) > sizeof(Py_ssize_t) &&\ + likely(v < (type)PY_SSIZE_T_MAX ||\ + v == (type)PY_SSIZE_T_MAX) &&\ + (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\ + v == (type)PY_SSIZE_T_MIN))) ||\ + (sizeof(type) == sizeof(Py_ssize_t) &&\ + (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\ v == (type)PY_SSIZE_T_MAX))) ) +#if defined (__cplusplus) && __cplusplus >= 201103L + #include <cstdlib> + #define __Pyx_sst_abs(value) std::abs(value) +#elif SIZEOF_INT >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) abs(value) +#elif SIZEOF_LONG >= SIZEOF_SIZE_T + #define __Pyx_sst_abs(value) labs(value) +#elif defined (_MSC_VER) && defined (_M_X64) + #define __Pyx_sst_abs(value) _abs64(value) +#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define __Pyx_sst_abs(value) llabs(value) +#elif defined (__GNUC__) + #define __Pyx_sst_abs(value) __builtin_llabs(value) +#else + #define __Pyx_sst_abs(value) ((value<0) ? -value : value) +#endif static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*); static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length); #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s)) @@ -294,11 +511,11 @@ static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*); #endif #define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s)) #define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s)) -#define __Pyx_PyObject_FromUString(s) __Pyx_PyObject_FromString((const char*)s) -#define __Pyx_PyBytes_FromUString(s) __Pyx_PyBytes_FromString((const char*)s) -#define __Pyx_PyByteArray_FromUString(s) __Pyx_PyByteArray_FromString((const char*)s) -#define __Pyx_PyStr_FromUString(s) __Pyx_PyStr_FromString((const char*)s) -#define __Pyx_PyUnicode_FromUString(s) __Pyx_PyUnicode_FromString((const char*)s) +#define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s) +#define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s) +#define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s) +#define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s) +#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s) #if PY_MAJOR_VERSION < 3 static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) { @@ -312,18 +529,25 @@ static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) #define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u)) #define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode -#define __Pyx_Owned_Py_None(b) (Py_INCREF(Py_None), Py_None) -#define __Pyx_PyBool_FromLong(b) ((b) ? (Py_INCREF(Py_True), Py_True) : (Py_INCREF(Py_False), Py_False)) +#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj) +#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None) +#define __Pyx_PyBool_FromLong(b) ((b) ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False)) static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*); -static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x); +static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x); static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*); static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t); -#if CYTHON_COMPILING_IN_CPYTHON +#if CYTHON_ASSUME_SAFE_MACROS #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) #else #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x) #endif #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x)) +#if PY_MAJOR_VERSION >= 3 +#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x)) +#else +#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x)) +#endif +#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x)) #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII static int __Pyx_sys_getdefaultencoding_not_ascii; static int __Pyx_init_sys_getdefaultencoding_params(void) { @@ -334,7 +558,7 @@ static int __Pyx_init_sys_getdefaultencoding_params(void) { const char* default_encoding_c; sys = PyImport_ImportModule("sys"); if (!sys) goto bad; - default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL); + default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL); Py_DECREF(sys); if (!default_encoding) goto bad; default_encoding_c = PyBytes_AsString(default_encoding); @@ -414,6 +638,7 @@ static PyObject *__pyx_d; static PyObject *__pyx_b; static PyObject *__pyx_empty_tuple; static PyObject *__pyx_empty_bytes; +static PyObject *__pyx_empty_unicode; static int __pyx_lineno; static int __pyx_clineno = 0; static const char * __pyx_cfilenm= __FILE__; @@ -421,9 +646,10 @@ static const char *__pyx_filename; static const char *__pyx_f[] = { - "filters.pyx", + "silx/math/fit/filters.pyx", "stringsource", }; +/* MemviewSliceStruct.proto */ struct __pyx_memoryview_obj; typedef struct { struct __pyx_memoryview_obj *memview; @@ -433,6 +659,7 @@ typedef struct { Py_ssize_t suboffsets[8]; } __Pyx_memviewslice; +/* BufferFormatStructs.proto */ #define IS_UNSIGNED(type) (((type) -1) > 0) struct __Pyx_StructField_; #define __PYX_BUF_FLAGS_PACKED_STRUCT (1 << 0) @@ -468,26 +695,28 @@ typedef struct { char is_valid_array; } __Pyx_BufFmt_Context; +/* Atomics.proto */ #include <pythread.h> #ifndef CYTHON_ATOMICS #define CYTHON_ATOMICS 1 #endif #define __pyx_atomic_int_type int -#if CYTHON_ATOMICS && __GNUC__ >= 4 && (__GNUC_MINOR__ > 1 || \ - (__GNUC_MINOR__ == 1 && __GNUC_PATCHLEVEL >= 2)) && \ +#if CYTHON_ATOMICS && __GNUC__ >= 4 && (__GNUC_MINOR__ > 1 ||\ + (__GNUC_MINOR__ == 1 && __GNUC_PATCHLEVEL >= 2)) &&\ !defined(__i386__) #define __pyx_atomic_incr_aligned(value, lock) __sync_fetch_and_add(value, 1) #define __pyx_atomic_decr_aligned(value, lock) __sync_fetch_and_sub(value, 1) #ifdef __PYX_DEBUG_ATOMICS #warning "Using GNU atomics" #endif -#elif CYTHON_ATOMICS && MSC_VER +#elif CYTHON_ATOMICS && defined(_MSC_VER) && 0 #include <Windows.h> + #undef __pyx_atomic_int_type #define __pyx_atomic_int_type LONG #define __pyx_atomic_incr_aligned(value, lock) InterlockedIncrement(value) #define __pyx_atomic_decr_aligned(value, lock) InterlockedDecrement(value) #ifdef __PYX_DEBUG_ATOMICS - #warning "Using MSVC atomics" + #pragma message ("Using MSVC atomics") #endif #elif CYTHON_ATOMICS && (defined(__ICC) || defined(__INTEL_COMPILER)) && 0 #define __pyx_atomic_incr_aligned(value, lock) _InterlockedIncrement(value) @@ -504,14 +733,14 @@ typedef struct { #endif typedef volatile __pyx_atomic_int_type __pyx_atomic_int; #if CYTHON_ATOMICS - #define __pyx_add_acquisition_count(memview) \ + #define __pyx_add_acquisition_count(memview)\ __pyx_atomic_incr_aligned(__pyx_get_slice_count_pointer(memview), memview->lock) - #define __pyx_sub_acquisition_count(memview) \ + #define __pyx_sub_acquisition_count(memview)\ __pyx_atomic_decr_aligned(__pyx_get_slice_count_pointer(memview), memview->lock) #else - #define __pyx_add_acquisition_count(memview) \ + #define __pyx_add_acquisition_count(memview)\ __pyx_add_acquisition_count_locked(__pyx_get_slice_count_pointer(memview), memview->lock) - #define __pyx_sub_acquisition_count(memview) \ + #define __pyx_sub_acquisition_count(memview)\ __pyx_sub_acquisition_count_locked(__pyx_get_slice_count_pointer(memview), memview->lock) #endif @@ -522,7 +751,7 @@ struct __pyx_MemviewEnum_obj; struct __pyx_memoryview_obj; struct __pyx_memoryviewslice_obj; -/* "View.MemoryView":99 +/* "View.MemoryView":103 * * @cname("__pyx_array") * cdef class array: # <<<<<<<<<<<<<< @@ -531,6 +760,7 @@ struct __pyx_memoryviewslice_obj; */ struct __pyx_array_obj { PyObject_HEAD + struct __pyx_vtabstruct_array *__pyx_vtab; char *data; Py_ssize_t len; char *format; @@ -546,7 +776,7 @@ struct __pyx_array_obj { }; -/* "View.MemoryView":269 +/* "View.MemoryView":275 * * @cname('__pyx_MemviewEnum') * cdef class Enum(object): # <<<<<<<<<<<<<< @@ -559,7 +789,7 @@ struct __pyx_MemviewEnum_obj { }; -/* "View.MemoryView":302 +/* "View.MemoryView":326 * * @cname('__pyx_memoryview') * cdef class memoryview(object): # <<<<<<<<<<<<<< @@ -582,7 +812,7 @@ struct __pyx_memoryview_obj { }; -/* "View.MemoryView":922 +/* "View.MemoryView":951 * * @cname('__pyx_memoryviewslice') * cdef class _memoryviewslice(memoryview): # <<<<<<<<<<<<<< @@ -599,7 +829,21 @@ struct __pyx_memoryviewslice_obj { -/* "View.MemoryView":302 +/* "View.MemoryView":103 + * + * @cname("__pyx_array") + * cdef class array: # <<<<<<<<<<<<<< + * + * cdef: + */ + +struct __pyx_vtabstruct_array { + PyObject *(*get_memview)(struct __pyx_array_obj *); +}; +static struct __pyx_vtabstruct_array *__pyx_vtabptr_array; + + +/* "View.MemoryView":326 * * @cname('__pyx_memoryview') * cdef class memoryview(object): # <<<<<<<<<<<<<< @@ -619,7 +863,7 @@ struct __pyx_vtabstruct_memoryview { static struct __pyx_vtabstruct_memoryview *__pyx_vtabptr_memoryview; -/* "View.MemoryView":922 +/* "View.MemoryView":951 * * @cname('__pyx_memoryviewslice') * cdef class _memoryviewslice(memoryview): # <<<<<<<<<<<<<< @@ -631,6 +875,9 @@ struct __pyx_vtabstruct__memoryviewslice { struct __pyx_vtabstruct_memoryview __pyx_base; }; static struct __pyx_vtabstruct__memoryviewslice *__pyx_vtabptr__memoryviewslice; + +/* --- Runtime support code (head) --- */ +/* Refnanny.proto */ #ifndef CYTHON_REFNANNY #define CYTHON_REFNANNY 0 #endif @@ -647,19 +894,19 @@ static struct __pyx_vtabstruct__memoryviewslice *__pyx_vtabptr__memoryviewslice; static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname); #define __Pyx_RefNannyDeclarations void *__pyx_refnanny = NULL; #ifdef WITH_THREAD - #define __Pyx_RefNannySetupContext(name, acquire_gil) \ - if (acquire_gil) { \ - PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure(); \ - __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__); \ - PyGILState_Release(__pyx_gilstate_save); \ - } else { \ - __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__); \ + #define __Pyx_RefNannySetupContext(name, acquire_gil)\ + if (acquire_gil) {\ + PyGILState_STATE __pyx_gilstate_save = PyGILState_Ensure();\ + __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\ + PyGILState_Release(__pyx_gilstate_save);\ + } else {\ + __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__);\ } #else - #define __Pyx_RefNannySetupContext(name, acquire_gil) \ + #define __Pyx_RefNannySetupContext(name, acquire_gil)\ __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__) #endif - #define __Pyx_RefNannyFinishContext() \ + #define __Pyx_RefNannyFinishContext()\ __Pyx_RefNanny->FinishContext(&__pyx_refnanny) #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), __LINE__) #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), __LINE__) @@ -682,18 +929,19 @@ static struct __pyx_vtabstruct__memoryviewslice *__pyx_vtabptr__memoryviewslice; #define __Pyx_XGOTREF(r) #define __Pyx_XGIVEREF(r) #endif -#define __Pyx_XDECREF_SET(r, v) do { \ - PyObject *tmp = (PyObject *) r; \ - r = v; __Pyx_XDECREF(tmp); \ +#define __Pyx_XDECREF_SET(r, v) do {\ + PyObject *tmp = (PyObject *) r;\ + r = v; __Pyx_XDECREF(tmp);\ } while (0) -#define __Pyx_DECREF_SET(r, v) do { \ - PyObject *tmp = (PyObject *) r; \ - r = v; __Pyx_DECREF(tmp); \ +#define __Pyx_DECREF_SET(r, v) do {\ + PyObject *tmp = (PyObject *) r;\ + r = v; __Pyx_DECREF(tmp);\ } while (0) #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0) #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0) -#if CYTHON_COMPILING_IN_CPYTHON +/* PyObjectGetAttrStr.proto */ +#if CYTHON_USE_TYPE_SLOTS static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) { PyTypeObject* tp = Py_TYPE(obj); if (likely(tp->tp_getattro)) @@ -708,42 +956,97 @@ static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n) #endif +/* GetBuiltinName.proto */ static PyObject *__Pyx_GetBuiltinName(PyObject *name); +/* RaiseDoubleKeywords.proto */ static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name); -static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[], \ - PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, \ +/* ParseKeywords.proto */ +static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\ + PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\ const char* function_name); +/* RaiseArgTupleInvalid.proto */ static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); +/* GetModuleGlobalName.proto */ static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name); +/* PyObjectCall.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw); #else #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw) #endif -static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); -static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); +/* PyThreadStateGet.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate; +#define __Pyx_PyThreadState_assign __pyx_tstate = PyThreadState_GET(); +#else +#define __Pyx_PyThreadState_declare +#define __Pyx_PyThreadState_assign +#endif + +/* PyErrFetchRestore.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else +#define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb) +#define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb) +#define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb) +#endif +/* RaiseException.proto */ static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause); +/* BufferIndexError.proto */ static void __Pyx_RaiseBufferIndexError(int axis); +/* PyCFunctionFastCall.proto */ +#if CYTHON_FAST_PYCCALL +static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs); +#else +#define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL) +#endif + +/* PyFunctionFastCall.proto */ +#if CYTHON_FAST_PYCALL +#define __Pyx_PyFunction_FastCall(func, args, nargs)\ + __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL) +#if 1 || PY_VERSION_HEX < 0x030600B1 +static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs); +#else +#define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs) +#endif +#endif + +/* PyObjectCallMethO.proto */ #if CYTHON_COMPILING_IN_CPYTHON static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg); #endif +/* PyObjectCallOneArg.proto */ static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg); +/* BufferFormatCheck.proto */ static CYTHON_INLINE int __Pyx_GetBufferAndValidate(Py_buffer* buf, PyObject* obj, __Pyx_TypeInfo* dtype, int flags, int nd, int cast, __Pyx_BufFmt_StackElem* stack); static CYTHON_INLINE void __Pyx_SafeReleaseBuffer(Py_buffer* info); +static const char* __Pyx_BufFmt_CheckString(__Pyx_BufFmt_Context* ctx, const char* ts); +static void __Pyx_BufFmt_Init(__Pyx_BufFmt_Context* ctx, + __Pyx_BufFmt_StackElem* stack, + __Pyx_TypeInfo* type); // PROTO +/* MemviewSliceInit.proto */ #define __Pyx_BUF_MAX_NDIMS %(BUF_MAX_NDIMS)d #define __Pyx_MEMVIEW_DIRECT 1 #define __Pyx_MEMVIEW_PTR 2 @@ -769,20 +1072,21 @@ static CYTHON_INLINE int __pyx_sub_acquisition_count_locked( static CYTHON_INLINE void __Pyx_INC_MEMVIEW(__Pyx_memviewslice *, int, int); static CYTHON_INLINE void __Pyx_XDEC_MEMVIEW(__Pyx_memviewslice *, int, int); -#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) : \ - (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) : \ +/* GetItemInt.proto */ +#define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\ + (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\ __Pyx_GetItemInt_Generic(o, to_py_func(i)))) -#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ +#define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL)) static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck); -#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck) \ - (__Pyx_fits_Py_ssize_t(i, type, is_signed) ? \ - __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) : \ +#define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\ + (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\ + __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\ (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL)) static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i, int wraparound, int boundscheck); @@ -790,58 +1094,97 @@ static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list, int wraparound, int boundscheck); +/* ArgTypeTest.proto */ static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, const char *name, int exact); +/* IncludeStringH.proto */ #include <string.h> +/* BytesEquals.proto */ static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals); +/* UnicodeEquals.proto */ static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals); +/* StrEquals.proto */ #if PY_MAJOR_VERSION >= 3 #define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals #else #define __Pyx_PyString_Equals __Pyx_PyBytes_Equals #endif -static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t, Py_ssize_t); /* proto */ - -#ifndef __PYX_FORCE_INIT_THREADS - #define __PYX_FORCE_INIT_THREADS 0 -#endif +/* None.proto */ +static CYTHON_INLINE Py_ssize_t __Pyx_div_Py_ssize_t(Py_ssize_t, Py_ssize_t); -#define UNARY_NEG_WOULD_OVERFLOW(x) (((x) < 0) & ((unsigned long)(x) == 0-(unsigned long)(x))) +/* UnaryNegOverflows.proto */ +#define UNARY_NEG_WOULD_OVERFLOW(x)\ + (((x) < 0) & ((unsigned long)(x) == 0-(unsigned long)(x))) static CYTHON_UNUSED int __pyx_array_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/ -static PyObject *get_memview(PyObject *__pyx_v_self); /*proto*/ +static PyObject *__pyx_array_get_memview(struct __pyx_array_obj *); /*proto*/ +/* GetAttr.proto */ static CYTHON_INLINE PyObject *__Pyx_GetAttr(PyObject *, PyObject *); +/* decode_c_string.proto */ static CYTHON_INLINE PyObject* __Pyx_decode_c_string( const char* cstring, Py_ssize_t start, Py_ssize_t stop, const char* encoding, const char* errors, PyObject* (*decode_func)(const char *s, Py_ssize_t size, const char *errors)); +/* RaiseTooManyValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); +/* RaiseNeedMoreValuesToUnpack.proto */ static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); +/* RaiseNoneIterError.proto */ static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void); +/* ExtTypeTest.proto */ static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type); -static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb); -static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb); +/* SaveResetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb); +#else +#define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb) +#define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb) +#endif + +/* PyErrExceptionMatches.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err) +static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err); +#else +#define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err) +#endif +/* GetException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb) +static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); +#endif +/* SwapException.proto */ +#if CYTHON_FAST_THREAD_STATE +#define __Pyx_ExceptionSwap(type, value, tb) __Pyx__ExceptionSwap(__pyx_tstate, type, value, tb) +static CYTHON_INLINE void __Pyx__ExceptionSwap(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb); +#else static CYTHON_INLINE void __Pyx_ExceptionSwap(PyObject **type, PyObject **value, PyObject **tb); +#endif + +/* Import.proto */ +static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); static CYTHON_UNUSED int __pyx_memoryview_getbuffer(PyObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /*proto*/ -static PyObject *__pyx_memoryview_transpose(PyObject *__pyx_v_self); /*proto*/ -static PyObject *__pyx_memoryview__get__base(PyObject *__pyx_v_self); /*proto*/ -static PyObject *__pyx_memoryview_get_shape(PyObject *__pyx_v_self); /*proto*/ -#if CYTHON_COMPILING_IN_CPYTHON +/* ListCompAppend.proto */ +#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { PyListObject* L = (PyListObject*) list; Py_ssize_t len = Py_SIZE(list); @@ -857,12 +1200,15 @@ static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) { #define __Pyx_ListComp_Append(L,x) PyList_Append(L,x) #endif -static PyObject *__pyx_memoryview_get_strides(PyObject *__pyx_v_self); /*proto*/ -static PyObject *__pyx_memoryview_get_suboffsets(PyObject *__pyx_v_self); /*proto*/ -static PyObject *__pyx_memoryview_get_ndim(PyObject *__pyx_v_self); /*proto*/ -static PyObject *__pyx_memoryview_get_itemsize(PyObject *__pyx_v_self); /*proto*/ -static PyObject *__pyx_memoryview_get_nbytes(PyObject *__pyx_v_self); /*proto*/ -static PyObject *__pyx_memoryview_get_size(PyObject *__pyx_v_self); /*proto*/ +/* PyIntBinop.proto */ +#if !CYTHON_COMPILING_IN_PYPY +static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace); +#else +#define __Pyx_PyInt_AddObjC(op1, op2, intval, inplace)\ + (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2)) +#endif + +/* ListExtend.proto */ static CYTHON_INLINE int __Pyx_PyList_Extend(PyObject* L, PyObject* v) { #if CYTHON_COMPILING_IN_CPYTHON PyObject* none = _PyList_Extend((PyListObject*)L, v); @@ -875,7 +1221,8 @@ static CYTHON_INLINE int __Pyx_PyList_Extend(PyObject* L, PyObject* v) { #endif } -#if CYTHON_COMPILING_IN_CPYTHON +/* ListAppend.proto */ +#if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) { PyListObject* L = (PyListObject*) list; Py_ssize_t len = Py_SIZE(list); @@ -891,26 +1238,29 @@ static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) { #define __Pyx_PyList_Append(L,x) PyList_Append(L,x) #endif +/* None.proto */ static CYTHON_INLINE void __Pyx_RaiseUnboundLocalError(const char *varname); -static CYTHON_INLINE long __Pyx_div_long(long, long); /* proto */ +/* ForceInitThreads.proto */ +#ifndef __PYX_FORCE_INIT_THREADS + #define __PYX_FORCE_INIT_THREADS 0 +#endif + +/* None.proto */ +static CYTHON_INLINE long __Pyx_div_long(long, long); -static PyObject *__pyx_memoryviewslice__get__base(PyObject *__pyx_v_self); /*proto*/ +/* WriteUnraisableException.proto */ static void __Pyx_WriteUnraisable(const char *name, int clineno, int lineno, const char *filename, - int full_traceback); + int full_traceback, int nogil); +/* SetVTable.proto */ static int __Pyx_SetVtable(PyObject *dict, void *vtable); -#if CYTHON_COMPILING_IN_CPYTHON -static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func); -#else -#define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL) -#endif - +/* CodeObjectCache.proto */ typedef struct { - int code_line; PyCodeObject* code_object; + int code_line; } __Pyx_CodeObjectCacheEntry; struct __Pyx_CodeObjectCache { int count; @@ -922,9 +1272,20 @@ static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int co static PyCodeObject *__pyx_find_code_object(int code_line); static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object); +/* AddTraceback.proto */ static void __Pyx_AddTraceback(const char *funcname, int c_line, int py_line, const char *filename); +#if PY_MAJOR_VERSION < 3 + static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags); + static void __Pyx_ReleaseBuffer(Py_buffer *view); +#else + #define __Pyx_GetBuffer PyObject_GetBuffer + #define __Pyx_ReleaseBuffer PyBuffer_Release +#endif + + +/* BufferStructDeclare.proto */ typedef struct { Py_ssize_t shape, strides, suboffsets; } __Pyx_Buf_DimInfo; @@ -938,53 +1299,56 @@ typedef struct { __Pyx_Buf_DimInfo diminfo[8]; } __Pyx_LocalBuf_ND; -#if PY_MAJOR_VERSION < 3 - static int __Pyx_GetBuffer(PyObject *obj, Py_buffer *view, int flags); - static void __Pyx_ReleaseBuffer(Py_buffer *view); -#else - #define __Pyx_GetBuffer PyObject_GetBuffer - #define __Pyx_ReleaseBuffer PyBuffer_Release -#endif - - +/* None.proto */ static Py_ssize_t __Pyx_zeros[] = {0, 0, 0, 0, 0, 0, 0, 0}; static Py_ssize_t __Pyx_minusones[] = {-1, -1, -1, -1, -1, -1, -1, -1}; -static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level); - -static PyObject *__pyx_memview_get_double(const char *itemp); -static int __pyx_memview_set_double(const char *itemp, PyObject *obj); - -static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); - -static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); - -static PyObject *__pyx_memview_get_long(const char *itemp); -static int __pyx_memview_set_long(const char *itemp, PyObject *obj); - -static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); - -static int __pyx_memviewslice_is_contig(const __Pyx_memviewslice *mvs, +/* MemviewSliceIsContig.proto */ +static int __pyx_memviewslice_is_contig(const __Pyx_memviewslice mvs, char order, int ndim); +/* OverlappingSlices.proto */ static int __pyx_slices_overlap(__Pyx_memviewslice *slice1, __Pyx_memviewslice *slice2, int ndim, size_t itemsize); +/* Capsule.proto */ +static CYTHON_INLINE PyObject *__pyx_capsule_create(void *p, const char *sig); + +/* MemviewDtypeToObject.proto */ +static CYTHON_INLINE PyObject *__pyx_memview_get_double(const char *itemp); +static CYTHON_INLINE int __pyx_memview_set_double(const char *itemp, PyObject *obj); + +/* CIntToPy.proto */ +static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value); + +/* MemviewDtypeToObject.proto */ +static CYTHON_INLINE PyObject *__pyx_memview_get_long(const char *itemp); +static CYTHON_INLINE int __pyx_memview_set_long(const char *itemp, PyObject *obj); + +/* MemviewSliceCopyTemplate.proto */ static __Pyx_memviewslice __pyx_memoryview_copy_new_contig(const __Pyx_memviewslice *from_mvs, const char *mode, int ndim, size_t sizeof_dtype, int contig_flag, int dtype_is_object); -static CYTHON_INLINE PyObject *__pyx_capsule_create(void *p, const char *sig); +/* CIntFromPy.proto */ +static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *); + +/* CIntFromPy.proto */ +static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *); +/* CIntToPy.proto */ static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value); +/* CIntFromPy.proto */ static CYTHON_INLINE char __Pyx_PyInt_As_char(PyObject *); +/* TypeInfoCompare.proto */ static int __pyx_typeinfo_cmp(__Pyx_TypeInfo *a, __Pyx_TypeInfo *b); +/* MemviewSliceValidateAndInit.proto */ static int __Pyx_ValidateAndInit_memviewslice( int *axes_specs, int c_or_f_flag, @@ -995,14 +1359,19 @@ static int __Pyx_ValidateAndInit_memviewslice( __Pyx_memviewslice *memviewslice, PyObject *original_obj); +/* ObjectToMemviewSlice.proto */ static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dc_double(PyObject *); +/* ObjectToMemviewSlice.proto */ static CYTHON_INLINE __Pyx_memviewslice __Pyx_PyObject_to_MemoryviewSlice_dc_long(PyObject *); +/* CheckBinaryVersion.proto */ static int __Pyx_check_binary_version(void); +/* InitStrings.proto */ static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); +static PyObject *__pyx_array_get_memview(struct __pyx_array_obj *__pyx_v_self); /* proto*/ static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index); /* proto*/ static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj); /* proto*/ static PyObject *__pyx_memoryview_setitem_slice_assignment(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_dst, PyObject *__pyx_v_src); /* proto*/ @@ -1017,9 +1386,9 @@ static PyObject *__pyx_memoryviewslice_assign_item_from_object(struct __pyx_memo /* Module declarations from 'cython' */ -/* Module declarations from 'filters_wrapper' */ +/* Module declarations from 'silx.math.fit.filters_wrapper' */ -/* Module declarations from 'filters' */ +/* Module declarations from 'silx.math.fit.filters' */ static PyTypeObject *__pyx_array_type = 0; static PyTypeObject *__pyx_MemviewEnum_type = 0; static PyTypeObject *__pyx_memoryview_type = 0; @@ -1029,6 +1398,8 @@ static PyObject *strided = 0; static PyObject *indirect = 0; static PyObject *contiguous = 0; static PyObject *indirect_contiguous = 0; +static int __pyx_memoryview_thread_locks_used; +static PyThread_type_lock __pyx_memoryview_thread_locks[8]; static struct __pyx_array_obj *__pyx_array_new(PyObject *, Py_ssize_t, char *, char *, char *); /*proto*/ static void *__pyx_align_pointer(void *, size_t); /*proto*/ static PyObject *__pyx_memoryview_new(PyObject *, int, int, __Pyx_TypeInfo *); /*proto*/ @@ -1063,192 +1434,142 @@ static void __pyx_memoryview_slice_assign_scalar(__Pyx_memviewslice *, int, size static void __pyx_memoryview__slice_assign_scalar(char *, Py_ssize_t *, Py_ssize_t *, int, size_t, void *); /*proto*/ static __Pyx_TypeInfo __Pyx_TypeInfo_double = { "double", NULL, sizeof(double), { 0 }, 0, 'R', 0, 0 }; static __Pyx_TypeInfo __Pyx_TypeInfo_long = { "long", NULL, sizeof(long), { 0 }, 0, IS_UNSIGNED(long) ? 'U' : 'I', IS_UNSIGNED(long), 0 }; -#define __Pyx_MODULE_NAME "filters" -int __pyx_module_is_main_filters = 0; +#define __Pyx_MODULE_NAME "silx.math.fit.filters" +int __pyx_module_is_main_silx__math__fit__filters = 0; -/* Implementation of 'filters' */ +/* Implementation of 'silx.math.fit.filters' */ static PyObject *__pyx_builtin_TypeError; static PyObject *__pyx_builtin_ValueError; static PyObject *__pyx_builtin_MemoryError; static PyObject *__pyx_builtin_enumerate; static PyObject *__pyx_builtin_range; static PyObject *__pyx_builtin_Ellipsis; -static PyObject *__pyx_builtin_xrange; static PyObject *__pyx_builtin_id; static PyObject *__pyx_builtin_IndexError; -static PyObject *__pyx_pf_7filters_strip(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data, PyObject *__pyx_v_w, PyObject *__pyx_v_niterations, PyObject *__pyx_v_factor, PyObject *__pyx_v_anchors); /* proto */ -static PyObject *__pyx_pf_7filters_2snip1d(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data, PyObject *__pyx_v_snip_width); /* proto */ -static PyObject *__pyx_pf_7filters_4snip2d(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data, PyObject *__pyx_v_snip_width); /* proto */ -static PyObject *__pyx_pf_7filters_6snip3d(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data, PyObject *__pyx_v_snip_width); /* proto */ -static PyObject *__pyx_pf_7filters_8savitsky_golay(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data, PyObject *__pyx_v_npoints); /* proto */ -static PyObject *__pyx_pf_7filters_10smooth1d(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data); /* proto */ -static PyObject *__pyx_pf_7filters_12smooth2d(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data); /* proto */ -static PyObject *__pyx_pf_7filters_14smooth3d(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data); /* proto */ -static int __pyx_array_MemoryView_5array___cinit__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_shape, Py_ssize_t __pyx_v_itemsize, PyObject *__pyx_v_format, PyObject *__pyx_v_mode, int __pyx_v_allocate_buffer); /* proto */ -static int __pyx_array_getbuffer_MemoryView_5array_2__getbuffer__(struct __pyx_array_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ -static void __pyx_array_MemoryView_5array_4__dealloc__(struct __pyx_array_obj *__pyx_v_self); /* proto */ -static PyObject *get_memview_MemoryView_5array_7memview___get__(struct __pyx_array_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_array_MemoryView_5array_6__getattr__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_attr); /* proto */ -static PyObject *__pyx_array_MemoryView_5array_8__getitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item); /* proto */ -static int __pyx_array_MemoryView_5array_10__setitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value); /* proto */ -static int __pyx_MemviewEnum_MemoryView_4Enum___init__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v_name); /* proto */ -static PyObject *__pyx_MemviewEnum_MemoryView_4Enum_2__repr__(struct __pyx_MemviewEnum_obj *__pyx_v_self); /* proto */ -static int __pyx_memoryview_MemoryView_10memoryview___cinit__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj, int __pyx_v_flags, int __pyx_v_dtype_is_object); /* proto */ -static void __pyx_memoryview_MemoryView_10memoryview_2__dealloc__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_MemoryView_10memoryview_4__getitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index); /* proto */ -static int __pyx_memoryview_MemoryView_10memoryview_6__setitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto */ -static int __pyx_memoryview_getbuffer_MemoryView_10memoryview_8__getbuffer__(struct __pyx_memoryview_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ -static PyObject *__pyx_memoryview_transpose_MemoryView_10memoryview_1T___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview__get__base_MemoryView_10memoryview_4base___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_get_shape_MemoryView_10memoryview_5shape___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_get_strides_MemoryView_10memoryview_7strides___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_get_suboffsets_MemoryView_10memoryview_10suboffsets___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_get_ndim_MemoryView_10memoryview_4ndim___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_get_itemsize_MemoryView_10memoryview_8itemsize___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_get_nbytes_MemoryView_10memoryview_6nbytes___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_get_size_MemoryView_10memoryview_4size___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static Py_ssize_t __pyx_memoryview_MemoryView_10memoryview_10__len__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_MemoryView_10memoryview_12__repr__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_MemoryView_10memoryview_14__str__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_MemoryView_10memoryview_16is_c_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_MemoryView_10memoryview_18is_f_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_MemoryView_10memoryview_20copy(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryview_MemoryView_10memoryview_22copy_fortran(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ -static void __pyx_memoryviewslice_MemoryView_16_memoryviewslice___dealloc__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_memoryviewslice__get__base_MemoryView_16_memoryviewslice_4base___get__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */ -static PyObject *__pyx_tp_new_array(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static PyObject *__pyx_tp_new_Enum(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static PyObject *__pyx_tp_new_memoryview(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ -static char __pyx_k_C[] = "C"; -static char __pyx_k_O[] = "O"; -static char __pyx_k_c[] = "c"; -static char __pyx_k_w[] = "w"; -static char __pyx_k_id[] = "id"; -static char __pyx_k_nx[] = "nx"; -static char __pyx_k_ny[] = "ny"; -static char __pyx_k_nz[] = "nz"; -static char __pyx_k_MIT[] = "MIT"; -static char __pyx_k_int[] = "int_"; -static char __pyx_k_len[] = "__len__"; -static char __pyx_k_obj[] = "obj"; -static char __pyx_k_base[] = "base"; -static char __pyx_k_copy[] = "copy"; -static char __pyx_k_data[] = "data"; -static char __pyx_k_date[] = "__date__"; -static char __pyx_k_main[] = "__main__"; -static char __pyx_k_mode[] = "mode"; -static char __pyx_k_name[] = "name"; -static char __pyx_k_ndim[] = "ndim"; -static char __pyx_k_pack[] = "pack"; -static char __pyx_k_size[] = "size"; -static char __pyx_k_step[] = "step"; -static char __pyx_k_stop[] = "stop"; -static char __pyx_k_test[] = "__test__"; -static char __pyx_k_array[] = "array"; -static char __pyx_k_class[] = "__class__"; -static char __pyx_k_dtype[] = "dtype"; -static char __pyx_k_empty[] = "empty"; -static char __pyx_k_error[] = "error"; -static char __pyx_k_flags[] = "flags"; -static char __pyx_k_nrows[] = "nrows"; -static char __pyx_k_numpy[] = "numpy"; -static char __pyx_k_order[] = "order"; -static char __pyx_k_range[] = "range"; -static char __pyx_k_shape[] = "shape"; -static char __pyx_k_start[] = "start"; -static char __pyx_k_strip[] = "strip"; -static char __pyx_k_data_c[] = "data_c"; -static char __pyx_k_factor[] = "factor"; -static char __pyx_k_format[] = "format"; -static char __pyx_k_import[] = "__import__"; -static char __pyx_k_logger[] = "_logger"; -static char __pyx_k_name_2[] = "__name__"; -static char __pyx_k_output[] = "output"; -static char __pyx_k_snip1d[] = "snip1d"; -static char __pyx_k_snip2d[] = "snip2d"; -static char __pyx_k_snip3d[] = "snip3d"; -static char __pyx_k_status[] = "status"; -static char __pyx_k_struct[] = "struct"; -static char __pyx_k_unpack[] = "unpack"; -static char __pyx_k_xrange[] = "xrange"; -static char __pyx_k_anchors[] = "anchors"; -static char __pyx_k_asarray[] = "asarray"; -static char __pyx_k_authors[] = "__authors__"; -static char __pyx_k_filters[] = "filters"; -static char __pyx_k_float64[] = "float64"; -static char __pyx_k_fortran[] = "fortran"; -static char __pyx_k_input_c[] = "input_c"; -static char __pyx_k_license[] = "__license__"; -static char __pyx_k_logging[] = "logging"; -static char __pyx_k_memview[] = "memview"; -static char __pyx_k_ndarray[] = "ndarray"; -static char __pyx_k_npoints[] = "npoints"; -static char __pyx_k_reshape[] = "reshape"; -static char __pyx_k_Ellipsis[] = "Ellipsis"; -static char __pyx_k_P_Knobel[] = "P. Knobel"; -static char __pyx_k_itemsize[] = "itemsize"; -static char __pyx_k_ncolumns[] = "ncolumns"; -static char __pyx_k_smooth1d[] = "smooth1d"; -static char __pyx_k_smooth2d[] = "smooth2d"; -static char __pyx_k_smooth3d[] = "smooth3d"; -static char __pyx_k_TypeError[] = "TypeError"; -static char __pyx_k_anchors_c[] = "anchors_c"; -static char __pyx_k_enumerate[] = "enumerate"; -static char __pyx_k_getLogger[] = "getLogger"; -static char __pyx_k_22_06_2016[] = "22/06/2016"; -static char __pyx_k_IndexError[] = "IndexError"; -static char __pyx_k_ValueError[] = "ValueError"; -static char __pyx_k_data_shape[] = "data_shape"; -static char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; -static char __pyx_k_snip_width[] = "snip_width"; -static char __pyx_k_MemoryError[] = "MemoryError"; -static char __pyx_k_basicConfig[] = "basicConfig"; -static char __pyx_k_len_anchors[] = "len_anchors"; -static char __pyx_k_niterations[] = "niterations"; -static char __pyx_k_pyx_getbuffer[] = "__pyx_getbuffer"; -static char __pyx_k_savitsky_golay[] = "savitsky_golay"; -static char __pyx_k_allocate_buffer[] = "allocate_buffer"; -static char __pyx_k_dtype_is_object[] = "dtype_is_object"; -static char __pyx_k_or_a_numpy_array[] = "or a numpy array"; -static char __pyx_k_strided_and_direct[] = "<strided and direct>"; -static char __pyx_k_or_a_2D_numpy_array[] = "or a 2D numpy array"; -static char __pyx_k_or_a_3D_numpy_array[] = "or a 3D numpy array"; -static char __pyx_k_strided_and_indirect[] = "<strided and indirect>"; -static char __pyx_k_contiguous_and_direct[] = "<contiguous and direct>"; -static char __pyx_k_MemoryView_of_r_object[] = "<MemoryView of %r object>"; -static char __pyx_k_MemoryView_of_r_at_0x_x[] = "<MemoryView of %r at 0x%x>"; -static char __pyx_k_contiguous_and_indirect[] = "<contiguous and indirect>"; -static char __pyx_k_Cannot_index_with_type_s[] = "Cannot index with type '%s'"; -static char __pyx_k_getbuffer_obj_view_flags[] = "getbuffer(obj, view, flags)"; -static char __pyx_k_Dimension_d_is_not_direct[] = "Dimension %d is not direct"; -static char __pyx_k_Invalid_shape_in_axis_d_d[] = "Invalid shape in axis %d: %d."; -static char __pyx_k_Index_out_of_bounds_axis_d[] = "Index out of bounds (axis %d)"; -static char __pyx_k_Step_may_not_be_zero_axis_d[] = "Step may not be zero (axis %d)"; -static char __pyx_k_itemsize_0_for_cython_array[] = "itemsize <= 0 for cython.array"; -static char __pyx_k_than_3_and_smaller_than_100[] = "than 3 and smaller than 100."; -static char __pyx_k_unable_to_allocate_array_data[] = "unable to allocate array data."; -static char __pyx_k_strided_and_direct_or_indirect[] = "<strided and direct or indirect>"; -static char __pyx_k_This_module_provides_background[] = "This module provides background extraction functions and smoothing\nfunctions. These functions are extracted from PyMca module SpecFitFuns.\n\nIndex of background extraction functions:\n------------------------------------------\n\n - :func:`strip`\n - :func:`snip1d`\n - :func:`snip2d`\n - :func:`snip3d`\n\nSmoothing functions:\n--------------------\n\n - :func:`savitsky_golay`\n - :func:`smooth1d`\n - :func:`smooth2d`\n - :func:`smooth3d`\n\nAPI documentation:\n-------------------\n\n"; -static char __pyx_k_data_must_be_a_2D_sequence_list[] = "data must be a 2D sequence (list, tuple) "; -static char __pyx_k_data_must_be_a_3D_sequence_list[] = "data must be a 3D sequence (list, tuple) "; -static char __pyx_k_mntdirect__scisoft_users_tvince[] = "/mntdirect/_scisoft/users/tvincent/src/silx/silx/math/fit/filters/filters.pyx"; -static char __pyx_k_All_dimensions_preceding_dimensi[] = "All dimensions preceding dimension %d must be indexed and not sliced"; -static char __pyx_k_Buffer_view_does_not_expose_stri[] = "Buffer view does not expose strides"; -static char __pyx_k_Can_only_create_a_buffer_that_is[] = "Can only create a buffer that is contiguous in memory."; -static char __pyx_k_Cannot_transpose_memoryview_with[] = "Cannot transpose memoryview with indirect dimensions"; -static char __pyx_k_Empty_shape_tuple_for_cython_arr[] = "Empty shape tuple for cython.array"; -static char __pyx_k_Indirect_dimensions_not_supporte[] = "Indirect dimensions not supported"; -static char __pyx_k_Invalid_mode_expected_c_or_fortr[] = "Invalid mode, expected 'c' or 'fortran', got %s"; -static char __pyx_k_Out_of_bounds_on_buffer_access_a[] = "Out of bounds on buffer access (axis %d)"; -static char __pyx_k_Smoothing_failed_Check_that_npoi[] = "Smoothing failed. Check that npoints is greater "; -static char __pyx_k_Unable_to_convert_item_to_object[] = "Unable to convert item to object"; -static char __pyx_k_data_array_must_be_2_dimensional[] = "data array must be 2-dimensional"; -static char __pyx_k_data_array_must_be_3_dimensional[] = "data array must be 3-dimensional"; -static char __pyx_k_data_must_be_a_sequence_list_tup[] = "data must be a sequence (list, tuple) "; -static char __pyx_k_got_differing_extents_in_dimensi[] = "got differing extents in dimension %d (got %d and %d)"; -static char __pyx_k_unable_to_allocate_shape_and_str[] = "unable to allocate shape and strides."; -static PyObject *__pyx_kp_s_22_06_2016; +static const char __pyx_k_C[] = "C"; +static const char __pyx_k_O[] = "O"; +static const char __pyx_k_c[] = "c"; +static const char __pyx_k_w[] = "w"; +static const char __pyx_k_id[] = "id"; +static const char __pyx_k_nx[] = "nx"; +static const char __pyx_k_ny[] = "ny"; +static const char __pyx_k_nz[] = "nz"; +static const char __pyx_k_MIT[] = "MIT"; +static const char __pyx_k_int[] = "int_"; +static const char __pyx_k_len[] = "__len__"; +static const char __pyx_k_obj[] = "obj"; +static const char __pyx_k_base[] = "base"; +static const char __pyx_k_copy[] = "copy"; +static const char __pyx_k_data[] = "data"; +static const char __pyx_k_date[] = "__date__"; +static const char __pyx_k_main[] = "__main__"; +static const char __pyx_k_mode[] = "mode"; +static const char __pyx_k_name[] = "name"; +static const char __pyx_k_ndim[] = "ndim"; +static const char __pyx_k_pack[] = "pack"; +static const char __pyx_k_size[] = "size"; +static const char __pyx_k_step[] = "step"; +static const char __pyx_k_stop[] = "stop"; +static const char __pyx_k_test[] = "__test__"; +static const char __pyx_k_ASCII[] = "ASCII"; +static const char __pyx_k_array[] = "array"; +static const char __pyx_k_class[] = "__class__"; +static const char __pyx_k_dtype[] = "dtype"; +static const char __pyx_k_empty[] = "empty"; +static const char __pyx_k_error[] = "error"; +static const char __pyx_k_flags[] = "flags"; +static const char __pyx_k_nrows[] = "nrows"; +static const char __pyx_k_numpy[] = "numpy"; +static const char __pyx_k_order[] = "order"; +static const char __pyx_k_range[] = "range"; +static const char __pyx_k_shape[] = "shape"; +static const char __pyx_k_start[] = "start"; +static const char __pyx_k_strip[] = "strip"; +static const char __pyx_k_data_c[] = "data_c"; +static const char __pyx_k_encode[] = "encode"; +static const char __pyx_k_factor[] = "factor"; +static const char __pyx_k_format[] = "format"; +static const char __pyx_k_import[] = "__import__"; +static const char __pyx_k_logger[] = "_logger"; +static const char __pyx_k_name_2[] = "__name__"; +static const char __pyx_k_output[] = "output"; +static const char __pyx_k_snip1d[] = "snip1d"; +static const char __pyx_k_snip2d[] = "snip2d"; +static const char __pyx_k_snip3d[] = "snip3d"; +static const char __pyx_k_status[] = "status"; +static const char __pyx_k_struct[] = "struct"; +static const char __pyx_k_unpack[] = "unpack"; +static const char __pyx_k_anchors[] = "anchors"; +static const char __pyx_k_asarray[] = "asarray"; +static const char __pyx_k_authors[] = "__authors__"; +static const char __pyx_k_float64[] = "float64"; +static const char __pyx_k_fortran[] = "fortran"; +static const char __pyx_k_input_c[] = "input_c"; +static const char __pyx_k_license[] = "__license__"; +static const char __pyx_k_logging[] = "logging"; +static const char __pyx_k_memview[] = "memview"; +static const char __pyx_k_ndarray[] = "ndarray"; +static const char __pyx_k_npoints[] = "npoints"; +static const char __pyx_k_reshape[] = "reshape"; +static const char __pyx_k_Ellipsis[] = "Ellipsis"; +static const char __pyx_k_P_Knobel[] = "P. Knobel"; +static const char __pyx_k_itemsize[] = "itemsize"; +static const char __pyx_k_ncolumns[] = "ncolumns"; +static const char __pyx_k_smooth1d[] = "smooth1d"; +static const char __pyx_k_smooth2d[] = "smooth2d"; +static const char __pyx_k_smooth3d[] = "smooth3d"; +static const char __pyx_k_TypeError[] = "TypeError"; +static const char __pyx_k_anchors_c[] = "anchors_c"; +static const char __pyx_k_enumerate[] = "enumerate"; +static const char __pyx_k_getLogger[] = "getLogger"; +static const char __pyx_k_15_05_2017[] = "15/05/2017"; +static const char __pyx_k_IndexError[] = "IndexError"; +static const char __pyx_k_ValueError[] = "ValueError"; +static const char __pyx_k_data_shape[] = "data_shape"; +static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__"; +static const char __pyx_k_snip_width[] = "snip_width"; +static const char __pyx_k_MemoryError[] = "MemoryError"; +static const char __pyx_k_len_anchors[] = "len_anchors"; +static const char __pyx_k_niterations[] = "niterations"; +static const char __pyx_k_pyx_getbuffer[] = "__pyx_getbuffer"; +static const char __pyx_k_savitsky_golay[] = "savitsky_golay"; +static const char __pyx_k_allocate_buffer[] = "allocate_buffer"; +static const char __pyx_k_dtype_is_object[] = "dtype_is_object"; +static const char __pyx_k_or_a_numpy_array[] = "or a numpy array"; +static const char __pyx_k_strided_and_direct[] = "<strided and direct>"; +static const char __pyx_k_or_a_2D_numpy_array[] = "or a 2D numpy array"; +static const char __pyx_k_or_a_3D_numpy_array[] = "or a 3D numpy array"; +static const char __pyx_k_strided_and_indirect[] = "<strided and indirect>"; +static const char __pyx_k_contiguous_and_direct[] = "<contiguous and direct>"; +static const char __pyx_k_silx_math_fit_filters[] = "silx.math.fit.filters"; +static const char __pyx_k_MemoryView_of_r_object[] = "<MemoryView of %r object>"; +static const char __pyx_k_MemoryView_of_r_at_0x_x[] = "<MemoryView of %r at 0x%x>"; +static const char __pyx_k_contiguous_and_indirect[] = "<contiguous and indirect>"; +static const char __pyx_k_Cannot_index_with_type_s[] = "Cannot index with type '%s'"; +static const char __pyx_k_Invalid_shape_in_axis_d_d[] = "Invalid shape in axis %d: %d."; +static const char __pyx_k_itemsize_0_for_cython_array[] = "itemsize <= 0 for cython.array"; +static const char __pyx_k_than_3_and_smaller_than_100[] = "than 3 and smaller than 100."; +static const char __pyx_k_unable_to_allocate_array_data[] = "unable to allocate array data."; +static const char __pyx_k_strided_and_direct_or_indirect[] = "<strided and direct or indirect>"; +static const char __pyx_k_This_module_provides_background[] = "This module provides background extraction functions and smoothing\nfunctions. These functions are extracted from PyMca module SpecFitFuns.\n\nIndex of background extraction functions:\n------------------------------------------\n\n - :func:`strip`\n - :func:`snip1d`\n - :func:`snip2d`\n - :func:`snip3d`\n\nSmoothing functions:\n--------------------\n\n - :func:`savitsky_golay`\n - :func:`smooth1d`\n - :func:`smooth2d`\n - :func:`smooth3d`\n\nAPI documentation:\n-------------------\n\n"; +static const char __pyx_k_data_must_be_a_2D_sequence_list[] = "data must be a 2D sequence (list, tuple) "; +static const char __pyx_k_data_must_be_a_3D_sequence_list[] = "data must be a 3D sequence (list, tuple) "; +static const char __pyx_k_users_kieffer_workspace_400_rel[] = "/users/kieffer/workspace-400/release/silx/silx/math/fit/filters.pyx"; +static const char __pyx_k_Buffer_view_does_not_expose_stri[] = "Buffer view does not expose strides"; +static const char __pyx_k_Can_only_create_a_buffer_that_is[] = "Can only create a buffer that is contiguous in memory."; +static const char __pyx_k_Empty_shape_tuple_for_cython_arr[] = "Empty shape tuple for cython.array"; +static const char __pyx_k_Indirect_dimensions_not_supporte[] = "Indirect dimensions not supported"; +static const char __pyx_k_Invalid_mode_expected_c_or_fortr[] = "Invalid mode, expected 'c' or 'fortran', got %s"; +static const char __pyx_k_Out_of_bounds_on_buffer_access_a[] = "Out of bounds on buffer access (axis %d)"; +static const char __pyx_k_Smoothing_failed_Check_that_npoi[] = "Smoothing failed. Check that npoints is greater "; +static const char __pyx_k_Unable_to_convert_item_to_object[] = "Unable to convert item to object"; +static const char __pyx_k_data_array_must_be_2_dimensional[] = "data array must be 2-dimensional"; +static const char __pyx_k_data_array_must_be_3_dimensional[] = "data array must be 3-dimensional"; +static const char __pyx_k_data_must_be_a_sequence_list_tup[] = "data must be a sequence (list, tuple) "; +static const char __pyx_k_got_differing_extents_in_dimensi[] = "got differing extents in dimension %d (got %d and %d)"; +static const char __pyx_k_unable_to_allocate_shape_and_str[] = "unable to allocate shape and strides."; +static PyObject *__pyx_kp_s_15_05_2017; +static PyObject *__pyx_n_s_ASCII; static PyObject *__pyx_kp_s_Buffer_view_does_not_expose_stri; static PyObject *__pyx_n_s_C; static PyObject *__pyx_kp_s_Can_only_create_a_buffer_that_is; @@ -1277,7 +1598,6 @@ static PyObject *__pyx_n_s_array; static PyObject *__pyx_n_s_asarray; static PyObject *__pyx_n_s_authors; static PyObject *__pyx_n_s_base; -static PyObject *__pyx_n_s_basicConfig; static PyObject *__pyx_n_s_c; static PyObject *__pyx_n_u_c; static PyObject *__pyx_n_s_class; @@ -1296,10 +1616,10 @@ static PyObject *__pyx_n_s_date; static PyObject *__pyx_n_s_dtype; static PyObject *__pyx_n_s_dtype_is_object; static PyObject *__pyx_n_s_empty; +static PyObject *__pyx_n_s_encode; static PyObject *__pyx_n_s_enumerate; static PyObject *__pyx_n_s_error; static PyObject *__pyx_n_s_factor; -static PyObject *__pyx_n_s_filters; static PyObject *__pyx_n_s_flags; static PyObject *__pyx_n_s_float64; static PyObject *__pyx_n_s_format; @@ -1320,7 +1640,6 @@ static PyObject *__pyx_n_s_logger; static PyObject *__pyx_n_s_logging; static PyObject *__pyx_n_s_main; static PyObject *__pyx_n_s_memview; -static PyObject *__pyx_kp_s_mntdirect__scisoft_users_tvince; static PyObject *__pyx_n_s_mode; static PyObject *__pyx_n_s_name; static PyObject *__pyx_n_s_name_2; @@ -1347,6 +1666,7 @@ static PyObject *__pyx_n_s_range; static PyObject *__pyx_n_s_reshape; static PyObject *__pyx_n_s_savitsky_golay; static PyObject *__pyx_n_s_shape; +static PyObject *__pyx_n_s_silx_math_fit_filters; static PyObject *__pyx_n_s_size; static PyObject *__pyx_n_s_smooth1d; static PyObject *__pyx_n_s_smooth2d; @@ -1369,8 +1689,52 @@ static PyObject *__pyx_kp_s_than_3_and_smaller_than_100; static PyObject *__pyx_kp_s_unable_to_allocate_array_data; static PyObject *__pyx_kp_s_unable_to_allocate_shape_and_str; static PyObject *__pyx_n_s_unpack; +static PyObject *__pyx_kp_s_users_kieffer_workspace_400_rel; static PyObject *__pyx_n_s_w; -static PyObject *__pyx_n_s_xrange; +static PyObject *__pyx_pf_4silx_4math_3fit_7filters_strip(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data, PyObject *__pyx_v_w, PyObject *__pyx_v_niterations, PyObject *__pyx_v_factor, PyObject *__pyx_v_anchors); /* proto */ +static PyObject *__pyx_pf_4silx_4math_3fit_7filters_2snip1d(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data, PyObject *__pyx_v_snip_width); /* proto */ +static PyObject *__pyx_pf_4silx_4math_3fit_7filters_4snip2d(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data, PyObject *__pyx_v_snip_width); /* proto */ +static PyObject *__pyx_pf_4silx_4math_3fit_7filters_6snip3d(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data, PyObject *__pyx_v_snip_width); /* proto */ +static PyObject *__pyx_pf_4silx_4math_3fit_7filters_8savitsky_golay(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data, PyObject *__pyx_v_npoints); /* proto */ +static PyObject *__pyx_pf_4silx_4math_3fit_7filters_10smooth1d(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data); /* proto */ +static PyObject *__pyx_pf_4silx_4math_3fit_7filters_12smooth2d(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data); /* proto */ +static PyObject *__pyx_pf_4silx_4math_3fit_7filters_14smooth3d(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data); /* proto */ +static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array___cinit__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_shape, Py_ssize_t __pyx_v_itemsize, PyObject *__pyx_v_format, PyObject *__pyx_v_mode, int __pyx_v_allocate_buffer); /* proto */ +static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_2__getbuffer__(struct __pyx_array_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ +static void __pyx_array___pyx_pf_15View_dot_MemoryView_5array_4__dealloc__(struct __pyx_array_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_5array_7memview___get__(struct __pyx_array_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_6__getattr__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_attr); /* proto */ +static PyObject *__pyx_array___pyx_pf_15View_dot_MemoryView_5array_8__getitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item); /* proto */ +static int __pyx_array___pyx_pf_15View_dot_MemoryView_5array_10__setitem__(struct __pyx_array_obj *__pyx_v_self, PyObject *__pyx_v_item, PyObject *__pyx_v_value); /* proto */ +static int __pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum___init__(struct __pyx_MemviewEnum_obj *__pyx_v_self, PyObject *__pyx_v_name); /* proto */ +static PyObject *__pyx_MemviewEnum___pyx_pf_15View_dot_MemoryView_4Enum_2__repr__(struct __pyx_MemviewEnum_obj *__pyx_v_self); /* proto */ +static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview___cinit__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_obj, int __pyx_v_flags, int __pyx_v_dtype_is_object); /* proto */ +static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__dealloc__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_4__getitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index); /* proto */ +static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_6__setitem__(struct __pyx_memoryview_obj *__pyx_v_self, PyObject *__pyx_v_index, PyObject *__pyx_v_value); /* proto */ +static int __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_8__getbuffer__(struct __pyx_memoryview_obj *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_1T___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4base___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_5shape___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_7strides___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_10suboffsets___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4ndim___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_8itemsize___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_6nbytes___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_10memoryview_4size___get__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static Py_ssize_t __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_10__len__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_12__repr__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_14__str__(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_16is_c_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_18is_f_contig(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_20copy(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_22copy_fortran(struct __pyx_memoryview_obj *__pyx_v_self); /* proto */ +static void __pyx_memoryviewslice___pyx_pf_15View_dot_MemoryView_16_memoryviewslice___dealloc__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_pf_15View_dot_MemoryView_16_memoryviewslice_4base___get__(struct __pyx_memoryviewslice_obj *__pyx_v_self); /* proto */ +static PyObject *__pyx_tp_new_array(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_Enum(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new_memoryview(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ +static PyObject *__pyx_tp_new__memoryviewslice(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/ static PyObject *__pyx_float_1_0; static PyObject *__pyx_int_0; static PyObject *__pyx_int_1; @@ -1386,9 +1750,9 @@ static PyObject *__pyx_tuple__6; static PyObject *__pyx_tuple__7; static PyObject *__pyx_tuple__8; static PyObject *__pyx_tuple__9; -static PyObject *__pyx_slice__21; -static PyObject *__pyx_slice__22; static PyObject *__pyx_slice__23; +static PyObject *__pyx_slice__24; +static PyObject *__pyx_slice__25; static PyObject *__pyx_tuple__10; static PyObject *__pyx_tuple__11; static PyObject *__pyx_tuple__12; @@ -1400,8 +1764,9 @@ static PyObject *__pyx_tuple__17; static PyObject *__pyx_tuple__18; static PyObject *__pyx_tuple__19; static PyObject *__pyx_tuple__20; -static PyObject *__pyx_tuple__24; -static PyObject *__pyx_tuple__25; +static PyObject *__pyx_tuple__21; +static PyObject *__pyx_tuple__22; +static PyObject *__pyx_tuple__26; static PyObject *__pyx_tuple__27; static PyObject *__pyx_tuple__29; static PyObject *__pyx_tuple__31; @@ -1410,11 +1775,11 @@ static PyObject *__pyx_tuple__35; static PyObject *__pyx_tuple__37; static PyObject *__pyx_tuple__39; static PyObject *__pyx_tuple__41; -static PyObject *__pyx_tuple__42; static PyObject *__pyx_tuple__43; static PyObject *__pyx_tuple__44; static PyObject *__pyx_tuple__45; -static PyObject *__pyx_codeobj__26; +static PyObject *__pyx_tuple__46; +static PyObject *__pyx_tuple__47; static PyObject *__pyx_codeobj__28; static PyObject *__pyx_codeobj__30; static PyObject *__pyx_codeobj__32; @@ -1422,8 +1787,9 @@ static PyObject *__pyx_codeobj__34; static PyObject *__pyx_codeobj__36; static PyObject *__pyx_codeobj__38; static PyObject *__pyx_codeobj__40; +static PyObject *__pyx_codeobj__42; -/* "filters.pyx":62 +/* "silx/math/fit/filters.pyx":61 * * * def strip(data, w=1, niterations=1000, factor=1.0, anchors=None): # <<<<<<<<<<<<<< @@ -1432,18 +1798,15 @@ static PyObject *__pyx_codeobj__40; */ /* Python wrapper */ -static PyObject *__pyx_pw_7filters_1strip(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ -static char __pyx_doc_7filters_strip[] = "strip(data, w=1, niterations=1000, factor=1.0, anchors=None)\nExtract background from data using the strip algorithm, as explained at\n http://pymca.sourceforge.net/stripbackground.html.\n\n In its simplest implementation it is just as an iterative procedure\n depending on two parameters. These parameters are the strip background\n width ``w``, and the number of iterations. At each iteration, if the\n contents of channel ``i``, ``y(i)``, is above the average of the contents\n of the channels at ``w`` channels of distance, ``y(i-w)`` and\n ``y(i+w)``, ``y(i)`` is replaced by the average.\n At the end of the process we are left with something that resembles a spectrum\n in which the peaks have been stripped.\n\n :param data: Data array\n :type data: numpy.ndarray\n :param w: Strip width\n :param niterations: number of iterations\n :param factor: scaling factor applied to the average of ``y(i-w)`` and\n ``y(i+w)`` before comparing to ``y(i)``\n :param anchors: Array of anchors, indices of points that will not be\n modified during the stripping procedure.\n :return: Data with peaks stripped away\n "; -static PyMethodDef __pyx_mdef_7filters_1strip = {"strip", (PyCFunction)__pyx_pw_7filters_1strip, METH_VARARGS|METH_KEYWORDS, __pyx_doc_7filters_strip}; -static PyObject *__pyx_pw_7filters_1strip(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { +static PyObject *__pyx_pw_4silx_4math_3fit_7filters_1strip(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static char __pyx_doc_4silx_4math_3fit_7filters_strip[] = "strip(data, w=1, niterations=1000, factor=1.0, anchors=None)\nExtract background from data using the strip algorithm, as explained at\n http://pymca.sourceforge.net/stripbackground.html.\n\n In its simplest implementation it is just as an iterative procedure\n depending on two parameters. These parameters are the strip background\n width ``w``, and the number of iterations. At each iteration, if the\n contents of channel ``i``, ``y(i)``, is above the average of the contents\n of the channels at ``w`` channels of distance, ``y(i-w)`` and\n ``y(i+w)``, ``y(i)`` is replaced by the average.\n At the end of the process we are left with something that resembles a spectrum\n in which the peaks have been stripped.\n\n :param data: Data array\n :type data: numpy.ndarray\n :param w: Strip width\n :param niterations: number of iterations\n :param factor: scaling factor applied to the average of ``y(i-w)`` and\n ``y(i+w)`` before comparing to ``y(i)``\n :param anchors: Array of anchors, indices of points that will not be\n modified during the stripping procedure.\n :return: Data with peaks stripped away\n "; +static PyMethodDef __pyx_mdef_4silx_4math_3fit_7filters_1strip = {"strip", (PyCFunction)__pyx_pw_4silx_4math_3fit_7filters_1strip, METH_VARARGS|METH_KEYWORDS, __pyx_doc_4silx_4math_3fit_7filters_strip}; +static PyObject *__pyx_pw_4silx_4math_3fit_7filters_1strip(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { PyObject *__pyx_v_data = 0; PyObject *__pyx_v_w = 0; PyObject *__pyx_v_niterations = 0; PyObject *__pyx_v_factor = 0; PyObject *__pyx_v_anchors = 0; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; PyObject *__pyx_r = 0; __Pyx_RefNannyDeclarations __Pyx_RefNannySetupContext("strip (wrapper)", 0); @@ -1493,7 +1856,7 @@ static PyObject *__pyx_pw_7filters_1strip(PyObject *__pyx_self, PyObject *__pyx_ } } if (unlikely(kw_args > 0)) { - if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "strip") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 62; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "strip") < 0)) __PYX_ERR(0, 61, __pyx_L3_error) } } else { switch (PyTuple_GET_SIZE(__pyx_args)) { @@ -1514,20 +1877,20 @@ static PyObject *__pyx_pw_7filters_1strip(PyObject *__pyx_self, PyObject *__pyx_ } goto __pyx_L4_argument_unpacking_done; __pyx_L5_argtuple_error:; - __Pyx_RaiseArgtupleInvalid("strip", 0, 1, 5, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 62; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __Pyx_RaiseArgtupleInvalid("strip", 0, 1, 5, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 61, __pyx_L3_error) __pyx_L3_error:; - __Pyx_AddTraceback("filters.strip", __pyx_clineno, __pyx_lineno, __pyx_filename); + __Pyx_AddTraceback("silx.math.fit.filters.strip", __pyx_clineno, __pyx_lineno, __pyx_filename); __Pyx_RefNannyFinishContext(); return NULL; __pyx_L4_argument_unpacking_done:; - __pyx_r = __pyx_pf_7filters_strip(__pyx_self, __pyx_v_data, __pyx_v_w, __pyx_v_niterations, __pyx_v_factor, __pyx_v_anchors); + __pyx_r = __pyx_pf_4silx_4math_3fit_7filters_strip(__pyx_self, __pyx_v_data, __pyx_v_w, __pyx_v_niterations, __pyx_v_factor, __pyx_v_anchors); /* function exit code */ __Pyx_RefNannyFinishContext(); return __pyx_r; } -static PyObject *__pyx_pf_7filters_strip(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data, PyObject *__pyx_v_w, PyObject *__pyx_v_niterations, PyObject *__pyx_v_factor, PyObject *__pyx_v_anchors) { +static PyObject *__pyx_pf_4silx_4math_3fit_7filters_strip(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_data, PyObject *__pyx_v_w, PyObject *__pyx_v_niterations, PyObject *__pyx_v_factor, PyObject *__pyx_v_anchors) { __Pyx_memviewslice __pyx_v_input_c = { 0, 0, { 0 }, { 0 }, { 0 } }; __Pyx_memviewslice __pyx_v_output = { 0, 0, { 0 }, { 0 }, { 0 } }; __Pyx_memviewslice __pyx_v_anchors_c = { 0, 0, { 0 }, { 0 }, { 0 } }; @@ -1545,9 +1908,9 @@ static PyObject *__pyx_pf_7filters_strip(CYTHON_UNUSED PyObject *__pyx_self, PyO PyObject *__pyx_t_7 = NULL; PyObject *__pyx_t_8 = NULL; __Pyx_memviewslice __pyx_t_9 = { 0, 0, { 0 }, { 0 }, { 0 } }; - __Pyx_memviewslice __pyx_t_10 = { 0, 0, { 0 }, { 0 }, { 0 } }; - int __pyx_t_11; - __Pyx_memviewslice __pyx_t_12 = { 0, 0, { 0 }, { 0 }, { 0 } }; + int __pyx_t_10; + __Pyx_memviewslice __pyx_t_11 = { 0, 0, { 0 }, { 0 }, { 0 } }; + Py_ssize_t __pyx_t_12; int __pyx_t_13; long __pyx_t_14; double __pyx_t_15; @@ -1557,235 +1920,248 @@ static PyObject *__pyx_pf_7filters_strip(CYTHON_UNUSED PyObject *__pyx_self, PyO long __pyx_t_19; Py_ssize_t __pyx_t_20; PyObject *__pyx_t_21 = NULL; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; __Pyx_RefNannySetupContext("strip", 0); - /* "filters.pyx":90 + /* "silx/math/fit/filters.pyx":89 * long[::1] anchors_c * * if not isinstance(data, numpy.ndarray): # <<<<<<<<<<<<<< * if not hasattr(data, "__len__"): * raise TypeError("data must be a sequence (list, tuple) " + */ - __pyx_t_1 = __Pyx_GetModuleGlobalName(__pyx_n_s_numpy); 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Nucl. Instruments and Methods in Physics Research A401\n (1997) 113-132*.\n\n The original idea for 1D and the low-statistics-digital-filter (lsdf) come\n from *C.G. Ryan et al. Nucl. Instruments and Methods in Physics Research\n B34 (1988) 396-402*.\n\n :param data: Data array, preferably 1D and of type *numpy.float64*.\n Else, the data array will be flattened and converted to\n *dtype=numpy.float64* prior to applying the snip filter.\n :type data: numpy.ndarray\n :param snip_width: Width of the snip operator, in number of samples.\n A sample will be iteratively compared to it's neighbors up to a\n distance of ``snip_width`` samples. This parameters has a direct\n influence on the speed of the algorithm.\n :type width: int\n :return: Baseline of the input array, as an array of the same shape.\n :rtype: numpy.ndarray\n "; -static PyMethodDef __pyx_mdef_7filters_3snip1d = {"snip1d", (PyCFunction)__pyx_pw_7filters_3snip1d, METH_VARARGS|METH_KEYWORDS, __pyx_doc_7filters_2snip1d}; -static PyObject *__pyx_pw_7filters_3snip1d(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { +static PyObject *__pyx_pw_4silx_4math_3fit_7filters_3snip1d(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/ +static char __pyx_doc_4silx_4math_3fit_7filters_2snip1d[] = "snip1d(data, snip_width)\nEstimate the baseline (background) of a 1D data vector by clipping peaks.\n\n Implementation of the algorithm SNIP in 1D is described in *Miroslav\n Morhac et al. Nucl. Instruments and Methods in Physics Research A401\n (1997) 113-132*.\n\n The original idea for 1D and the low-statistics-digital-filter (lsdf) come\n from *C.G. Ryan et al. Nucl. Instruments and Methods in Physics Research\n B34 (1988) 396-402*.\n\n :param data: Data array, preferably 1D and of type *numpy.float64*.\n Else, the data array will be flattened and converted to\n *dtype=numpy.float64* prior to applying the snip filter.\n :type data: numpy.ndarray\n :param snip_width: Width of the snip operator, in number of samples.\n A sample will be iteratively compared to it's neighbors up to a\n distance of ``snip_width`` samples. This parameters has a direct\n influence on the speed of the algorithm.\n :type width: int\n :return: Baseline of the input array, as an array of the same shape.\n :rtype: numpy.ndarray\n "; +static PyMethodDef __pyx_mdef_4silx_4math_3fit_7filters_3snip1d = {"snip1d", (PyCFunction)__pyx_pw_4silx_4math_3fit_7filters_3snip1d, METH_VARARGS|METH_KEYWORDS, __pyx_doc_4silx_4math_3fit_7filters_2snip1d}; +static PyObject *__pyx_pw_4silx_4math_3fit_7filters_3snip1d(PyObject *__pyx_self, PyObject *__pyx_args, PyObject *__pyx_kwds) { PyObject *__pyx_v_data = 0; PyObject *__pyx_v_snip_width = 0; - int __pyx_lineno = 0; - const char *__pyx_filename = NULL; - int __pyx_clineno = 0; PyObject *__pyx_r = 0; __Pyx_RefNannyDeclarations __Pyx_RefNannySetupContext("snip1d (wrapper)", 0); @@ -2168,11 +2586,11 @@ static PyObject *__pyx_pw_7filters_3snip1d(PyObject *__pyx_self, PyObject *__pyx case 1: if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_snip_width)) != 0)) kw_args--; else { - __Pyx_RaiseArgtupleInvalid("snip1d", 1, 2, 2, 1); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 128; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __Pyx_RaiseArgtupleInvalid("snip1d", 1, 2, 2, 1); __PYX_ERR(0, 127, __pyx_L3_error) } } if (unlikely(kw_args > 0)) { - if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "snip1d") < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 128; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "snip1d") < 0)) __PYX_ERR(0, 127, __pyx_L3_error) } } else if (PyTuple_GET_SIZE(__pyx_args) != 2) { goto __pyx_L5_argtuple_error; @@ -2185,20 +2603,20 @@ static PyObject *__pyx_pw_7filters_3snip1d(PyObject *__pyx_self, PyObject *__pyx } goto __pyx_L4_argument_unpacking_done; __pyx_L5_argtuple_error:; - __Pyx_RaiseArgtupleInvalid("snip1d", 1, 2, 2, PyTuple_GET_SIZE(__pyx_args)); {__pyx_filename = __pyx_f[0]; __pyx_lineno = 128; __pyx_clineno = __LINE__; goto __pyx_L3_error;} + __Pyx_RaiseArgtupleInvalid("snip1d", 1, 2, 2, PyTuple_GET_SIZE(__pyx_args)); 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if (__pyx_t_1) { - /* "View.MemoryView":321 + /* "View.MemoryView":345 * self.flags = flags * if type(self) is memoryview or obj is not None: * __Pyx_GetBuffer(obj, &self.view, flags) # <<<<<<<<<<<<<< * if <PyObject *> self.view.obj == NULL: * (<__pyx_buffer *> &self.view).obj = Py_None */ - __pyx_t_4 = __Pyx_GetBuffer(__pyx_v_obj, (&__pyx_v_self->view), __pyx_v_flags); if (unlikely(__pyx_t_4 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 321; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_4 = __Pyx_GetBuffer(__pyx_v_obj, (&__pyx_v_self->view), __pyx_v_flags); if (unlikely(__pyx_t_4 == -1)) __PYX_ERR(1, 345, __pyx_L1_error) - /* "View.MemoryView":322 + /* "View.MemoryView":346 * if type(self) is memoryview or obj is not None: * __Pyx_GetBuffer(obj, &self.view, flags) * if <PyObject *> self.view.obj == NULL: # <<<<<<<<<<<<<< @@ -7186,7 +8156,7 @@ static int __pyx_memoryview_MemoryView_10memoryview___cinit__(struct __pyx_memor __pyx_t_1 = ((((PyObject *)__pyx_v_self->view.obj) == NULL) != 0); if (__pyx_t_1) { - /* "View.MemoryView":323 + /* "View.MemoryView":347 * __Pyx_GetBuffer(obj, &self.view, flags) * if <PyObject *> self.view.obj == NULL: * (<__pyx_buffer *> &self.view).obj = Py_None # <<<<<<<<<<<<<< @@ -7195,90 +8165,177 @@ static int __pyx_memoryview_MemoryView_10memoryview___cinit__(struct __pyx_memor */ ((Py_buffer *)(&__pyx_v_self->view))->obj = Py_None; - /* "View.MemoryView":324 + /* "View.MemoryView":348 * if <PyObject *> self.view.obj == NULL: * (<__pyx_buffer *> &self.view).obj = Py_None * Py_INCREF(Py_None) # <<<<<<<<<<<<<< * - * self.lock = PyThread_allocate_lock() + * global __pyx_memoryview_thread_locks_used */ Py_INCREF(Py_None); - goto __pyx_L6; + + /* "View.MemoryView":346 + * if type(self) is memoryview or obj is not None: + * __Pyx_GetBuffer(obj, &self.view, flags) + * if <PyObject *> self.view.obj == NULL: # <<<<<<<<<<<<<< + * (<__pyx_buffer *> &self.view).obj = Py_None + * Py_INCREF(Py_None) + */ } - __pyx_L6:; - goto __pyx_L3; + + /* "View.MemoryView":344 + * self.obj = obj + * self.flags = flags + * if type(self) is memoryview or obj is not None: # <<<<<<<<<<<<<< + * __Pyx_GetBuffer(obj, &self.view, flags) + * if <PyObject *> self.view.obj == NULL: + */ } - __pyx_L3:; - /* "View.MemoryView":326 - * Py_INCREF(Py_None) + /* "View.MemoryView":351 * - * self.lock = PyThread_allocate_lock() # <<<<<<<<<<<<<< - * if self.lock == NULL: - * raise MemoryError + * global __pyx_memoryview_thread_locks_used + * if __pyx_memoryview_thread_locks_used < THREAD_LOCKS_PREALLOCATED: # <<<<<<<<<<<<<< + * self.lock = __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] + * __pyx_memoryview_thread_locks_used += 1 */ - __pyx_v_self->lock = PyThread_allocate_lock(); + __pyx_t_1 = ((__pyx_memoryview_thread_locks_used < 8) != 0); + if (__pyx_t_1) { - /* "View.MemoryView":327 - * - * self.lock = PyThread_allocate_lock() - * if self.lock == NULL: # <<<<<<<<<<<<<< - * raise MemoryError + /* "View.MemoryView":352 + * global __pyx_memoryview_thread_locks_used + * if __pyx_memoryview_thread_locks_used < THREAD_LOCKS_PREALLOCATED: + * self.lock = __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] # <<<<<<<<<<<<<< + * __pyx_memoryview_thread_locks_used += 1 + * if self.lock is NULL: + */ + __pyx_v_self->lock = (__pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used]); + + /* "View.MemoryView":353 + * if __pyx_memoryview_thread_locks_used < THREAD_LOCKS_PREALLOCATED: + * self.lock = __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] + * __pyx_memoryview_thread_locks_used += 1 # <<<<<<<<<<<<<< + * if self.lock is NULL: + * self.lock = PyThread_allocate_lock() + */ + __pyx_memoryview_thread_locks_used = (__pyx_memoryview_thread_locks_used + 1); + + /* "View.MemoryView":351 * + * global __pyx_memoryview_thread_locks_used + * if __pyx_memoryview_thread_locks_used < THREAD_LOCKS_PREALLOCATED: # <<<<<<<<<<<<<< + * self.lock = __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] + * __pyx_memoryview_thread_locks_used += 1 + */ + } + + /* "View.MemoryView":354 + * self.lock = __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] + * __pyx_memoryview_thread_locks_used += 1 + * if self.lock is NULL: # <<<<<<<<<<<<<< + * self.lock = PyThread_allocate_lock() + * if self.lock is NULL: */ __pyx_t_1 = ((__pyx_v_self->lock == NULL) != 0); if (__pyx_t_1) { - /* "View.MemoryView":328 - * self.lock = PyThread_allocate_lock() - * if self.lock == NULL: - * raise MemoryError # <<<<<<<<<<<<<< + /* "View.MemoryView":355 + * __pyx_memoryview_thread_locks_used += 1 + * if self.lock is NULL: + * self.lock = PyThread_allocate_lock() # <<<<<<<<<<<<<< + * if self.lock is NULL: + * raise MemoryError + */ + __pyx_v_self->lock = PyThread_allocate_lock(); + + /* "View.MemoryView":356 + * if self.lock is NULL: + * self.lock = PyThread_allocate_lock() + * if self.lock is NULL: # <<<<<<<<<<<<<< + * raise MemoryError + * + */ + __pyx_t_1 = ((__pyx_v_self->lock == NULL) != 0); + if (__pyx_t_1) { + + /* "View.MemoryView":357 + * self.lock = PyThread_allocate_lock() + * if self.lock is NULL: + * raise MemoryError # <<<<<<<<<<<<<< * * if flags & PyBUF_FORMAT: */ - PyErr_NoMemory(); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 328; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + PyErr_NoMemory(); __PYX_ERR(1, 357, __pyx_L1_error) + + /* "View.MemoryView":356 + * if self.lock is NULL: + * self.lock = PyThread_allocate_lock() + * if self.lock is NULL: # <<<<<<<<<<<<<< + * raise MemoryError + * + */ + } + + /* "View.MemoryView":354 + * self.lock = __pyx_memoryview_thread_locks[__pyx_memoryview_thread_locks_used] + * __pyx_memoryview_thread_locks_used += 1 + * if self.lock is NULL: # <<<<<<<<<<<<<< + * self.lock = PyThread_allocate_lock() + * if self.lock is NULL: + */ } - /* "View.MemoryView":330 - * raise MemoryError + /* "View.MemoryView":359 + * raise MemoryError * * if flags & PyBUF_FORMAT: # <<<<<<<<<<<<<< - * self.dtype_is_object = self.view.format == b'O' + * self.dtype_is_object = (self.view.format[0] == b'O' and self.view.format[1] == b'\0') * else: */ __pyx_t_1 = ((__pyx_v_flags & PyBUF_FORMAT) != 0); if (__pyx_t_1) { - /* "View.MemoryView":331 + /* "View.MemoryView":360 * * if flags & PyBUF_FORMAT: - * self.dtype_is_object = self.view.format == b'O' # <<<<<<<<<<<<<< + * self.dtype_is_object = (self.view.format[0] == b'O' and self.view.format[1] == b'\0') # <<<<<<<<<<<<<< * else: * self.dtype_is_object = dtype_is_object */ - __pyx_t_5 = __Pyx_PyBytes_FromString(__pyx_v_self->view.format); if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 331; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_GOTREF(__pyx_t_5); - __pyx_t_6 = PyObject_RichCompare(__pyx_t_5, __pyx_n_b_O, Py_EQ); __Pyx_XGOTREF(__pyx_t_6); if (unlikely(!__pyx_t_6)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 331; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0; - __pyx_t_1 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely((__pyx_t_1 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 331; __pyx_clineno = __LINE__; goto __pyx_L1_error;} - __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0; + __pyx_t_2 = (((__pyx_v_self->view.format[0]) == 'O') != 0); + if (__pyx_t_2) { + } else { + __pyx_t_1 = __pyx_t_2; + goto __pyx_L11_bool_binop_done; + } + __pyx_t_2 = (((__pyx_v_self->view.format[1]) == '\x00') != 0); + __pyx_t_1 = __pyx_t_2; + __pyx_L11_bool_binop_done:; __pyx_v_self->dtype_is_object = __pyx_t_1; - goto __pyx_L8; + + /* "View.MemoryView":359 + * raise MemoryError + * + * if flags & PyBUF_FORMAT: # <<<<<<<<<<<<<< + * self.dtype_is_object = (self.view.format[0] == b'O' and self.view.format[1] == b'\0') + * else: + */ + goto __pyx_L10; } - /*else*/ { - /* "View.MemoryView":333 - * self.dtype_is_object = self.view.format == b'O' + /* "View.MemoryView":362 + * self.dtype_is_object = (self.view.format[0] == b'O' and self.view.format[1] == b'\0') * else: * self.dtype_is_object = dtype_is_object # <<<<<<<<<<<<<< * * self.acquisition_count_aligned_p = <__pyx_atomic_int *> align_pointer( */ + /*else*/ { __pyx_v_self->dtype_is_object = __pyx_v_dtype_is_object; } - __pyx_L8:; + __pyx_L10:; - /* "View.MemoryView":335 + /* "View.MemoryView":364 * self.dtype_is_object = dtype_is_object * * self.acquisition_count_aligned_p = <__pyx_atomic_int *> align_pointer( # <<<<<<<<<<<<<< @@ -7287,7 +8344,7 @@ static int __pyx_memoryview_MemoryView_10memoryview___cinit__(struct __pyx_memor */ __pyx_v_self->acquisition_count_aligned_p = ((__pyx_atomic_int *)__pyx_align_pointer(((void *)(&(__pyx_v_self->acquisition_count[0]))), (sizeof(__pyx_atomic_int)))); - /* "View.MemoryView":337 + /* "View.MemoryView":366 * self.acquisition_count_aligned_p = <__pyx_atomic_int *> align_pointer( * <void *> &self.acquisition_count[0], sizeof(__pyx_atomic_int)) * self.typeinfo = NULL # <<<<<<<<<<<<<< @@ -7296,7 +8353,7 @@ static int __pyx_memoryview_MemoryView_10memoryview___cinit__(struct __pyx_memor */ __pyx_v_self->typeinfo = NULL; - /* "View.MemoryView":317 + /* "View.MemoryView":341 * cdef __Pyx_TypeInfo *typeinfo * * def __cinit__(memoryview self, object obj, int flags, bint dtype_is_object=False): # <<<<<<<<<<<<<< @@ -7308,8 +8365,6 @@ static int __pyx_memoryview_MemoryView_10memoryview___cinit__(struct __pyx_memor __pyx_r = 0; goto __pyx_L0; __pyx_L1_error:; - __Pyx_XDECREF(__pyx_t_5); - __Pyx_XDECREF(__pyx_t_6); __Pyx_AddTraceback("View.MemoryView.memoryview.__cinit__", __pyx_clineno, __pyx_lineno, __pyx_filename); __pyx_r = -1; __pyx_L0:; @@ -7317,7 +8372,7 @@ static int __pyx_memoryview_MemoryView_10memoryview___cinit__(struct __pyx_memor return __pyx_r; } -/* "View.MemoryView":339 +/* "View.MemoryView":368 * self.typeinfo = NULL * * def __dealloc__(memoryview self): # <<<<<<<<<<<<<< @@ -7330,19 +8385,24 @@ static void __pyx_memoryview___dealloc__(PyObject *__pyx_v_self); /*proto*/ static void __pyx_memoryview___dealloc__(PyObject *__pyx_v_self) { __Pyx_RefNannyDeclarations __Pyx_RefNannySetupContext("__dealloc__ (wrapper)", 0); - __pyx_memoryview_MemoryView_10memoryview_2__dealloc__(((struct __pyx_memoryview_obj *)__pyx_v_self)); + __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__dealloc__(((struct __pyx_memoryview_obj *)__pyx_v_self)); /* function exit code */ __Pyx_RefNannyFinishContext(); } -static void __pyx_memoryview_MemoryView_10memoryview_2__dealloc__(struct __pyx_memoryview_obj *__pyx_v_self) { +static void __pyx_memoryview___pyx_pf_15View_dot_MemoryView_10memoryview_2__dealloc__(struct __pyx_memoryview_obj *__pyx_v_self) { + int __pyx_v_i; __Pyx_RefNannyDeclarations int __pyx_t_1; int __pyx_t_2; + int __pyx_t_3; + int __pyx_t_4; + PyThread_type_lock __pyx_t_5; + PyThread_type_lock __pyx_t_6; __Pyx_RefNannySetupContext("__dealloc__", 0); - /* "View.MemoryView":340 + /* "View.MemoryView":369 * * def __dealloc__(memoryview self): * if self.obj is not None: # <<<<<<<<<<<<<< @@ -7353,41 +8413,144 @@ static void __pyx_memoryview_MemoryView_10memoryview_2__dealloc__(struct __pyx_m __pyx_t_2 = (__pyx_t_1 != 0); if (__pyx_t_2) { - /* "View.MemoryView":341 + /* "View.MemoryView":370 * def __dealloc__(memoryview self): * if self.obj is not None: * __Pyx_ReleaseBuffer(&self.view) # <<<<<<<<<<<<<< * - * if self.lock != NULL: + * cdef int i */ __Pyx_ReleaseBuffer((&__pyx_v_self->view)); - goto __pyx_L3; - } - __pyx_L3:; - /* "View.MemoryView":343 + /* "View.MemoryView":369 + * + * def __dealloc__(memoryview self): + * if self.obj is not None: # <<<<<<<<<<<<<< * __Pyx_ReleaseBuffer(&self.view) * + */ + } + + /* "View.MemoryView":374 + * cdef int i + * global __pyx_memoryview_thread_locks_used * if self.lock != NULL: # <<<<<<<<<<<<<< - * PyThread_free_lock(self.lock) - * + * for i in range(__pyx_memoryview_thread_locks_used): + * if __pyx_memoryview_thread_locks[i] is self.lock: */ __pyx_t_2 = ((__pyx_v_self->lock != NULL) != 0); if (__pyx_t_2) { - /* "View.MemoryView":344 - * + /* "View.MemoryView":375 + * global __pyx_memoryview_thread_locks_used + * if self.lock != NULL: + * for i in range(__pyx_memoryview_thread_locks_used): # <<<<<<<<<<<<<< + * if __pyx_memoryview_thread_locks[i] is self.lock: + * __pyx_memoryview_thread_locks_used -= 1 + */ + __pyx_t_3 = __pyx_memoryview_thread_locks_used; + for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { + __pyx_v_i = __pyx_t_4; 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__pyx_clineno = __LINE__; goto __pyx_L1_error;} + #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + __pyx_t_5 = PyList_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) __PYX_ERR(1, 389, __pyx_L1_error) #else - __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 350; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 389, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_5); #endif } else { if (__pyx_t_3 >= PyTuple_GET_SIZE(__pyx_t_2)) break; - #if CYTHON_COMPILING_IN_CPYTHON - __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 350; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS + __pyx_t_5 = PyTuple_GET_ITEM(__pyx_t_2, __pyx_t_3); __Pyx_INCREF(__pyx_t_5); __pyx_t_3++; if (unlikely(0 < 0)) __PYX_ERR(1, 389, __pyx_L1_error) #else - __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 350; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_5 = PySequence_ITEM(__pyx_t_2, __pyx_t_3); __pyx_t_3++; if (unlikely(!__pyx_t_5)) __PYX_ERR(1, 389, __pyx_L1_error) + __Pyx_GOTREF(__pyx_t_5); #endif } } else { @@ -7473,7 +8635,7 @@ static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__py PyObject* exc_type = PyErr_Occurred(); if (exc_type) { if (likely(exc_type == PyExc_StopIteration || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear(); - else {__pyx_filename = __pyx_f[1]; __pyx_lineno = 350; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + else __PYX_ERR(1, 389, __pyx_L1_error) } break; } @@ -7484,18 +8646,18 @@ static char *__pyx_memoryview_get_item_pointer(struct __pyx_memoryview_obj *__py __pyx_v_dim = __pyx_t_1; 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__pyx_t_8 = 0; __Pyx_DECREF_SET(__pyx_v_obj, __pyx_t_7); __pyx_t_7 = 0; + + /* "View.MemoryView":422 + * cdef is_slice(self, obj): + * if not isinstance(obj, memoryview): + * try: # <<<<<<<<<<<<<< + * obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS, + * self.dtype_is_object) + */ } __Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0; __Pyx_XDECREF(__pyx_t_4); __pyx_t_4 = 0; __Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0; goto __pyx_L11_try_end; __pyx_L4_error:; + __Pyx_PyThreadState_assign __Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0; __Pyx_XDECREF(__pyx_t_8); __pyx_t_8 = 0; __Pyx_XDECREF(__pyx_t_7); __pyx_t_7 = 0; - /* "View.MemoryView":386 + /* "View.MemoryView":425 * obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS, * self.dtype_is_object) * except TypeError: # <<<<<<<<<<<<<< * return None * */ - __pyx_t_9 = PyErr_ExceptionMatches(__pyx_builtin_TypeError); + __pyx_t_9 = __Pyx_PyErr_ExceptionMatches(__pyx_builtin_TypeError); if (__pyx_t_9) { __Pyx_AddTraceback("View.MemoryView.memoryview.is_slice", __pyx_clineno, __pyx_lineno, __pyx_filename); - if (__Pyx_GetException(&__pyx_t_7, &__pyx_t_8, &__pyx_t_6) < 0) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 386; __pyx_clineno = __LINE__; goto __pyx_L6_except_error;} + if (__Pyx_GetException(&__pyx_t_7, &__pyx_t_8, &__pyx_t_6) < 0) __PYX_ERR(1, 425, __pyx_L6_except_error) __Pyx_GOTREF(__pyx_t_7); __Pyx_GOTREF(__pyx_t_8); __Pyx_GOTREF(__pyx_t_6); - /* "View.MemoryView":387 + /* "View.MemoryView":426 * self.dtype_is_object) * except TypeError: * return None # <<<<<<<<<<<<<< @@ -8032,12 +9228,22 @@ static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_ } goto __pyx_L6_except_error; __pyx_L6_except_error:; + + /* "View.MemoryView":422 + * cdef is_slice(self, obj): + * if not isinstance(obj, memoryview): + * try: # <<<<<<<<<<<<<< + * obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS, + * self.dtype_is_object) + */ + __Pyx_PyThreadState_assign __Pyx_XGIVEREF(__pyx_t_3); __Pyx_XGIVEREF(__pyx_t_4); __Pyx_XGIVEREF(__pyx_t_5); __Pyx_ExceptionReset(__pyx_t_3, __pyx_t_4, __pyx_t_5); goto __pyx_L1_error; __pyx_L7_except_return:; + __Pyx_PyThreadState_assign __Pyx_XGIVEREF(__pyx_t_3); __Pyx_XGIVEREF(__pyx_t_4); __Pyx_XGIVEREF(__pyx_t_5); @@ -8045,11 +9251,17 @@ static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_ goto __pyx_L0; __pyx_L11_try_end:; } - goto __pyx_L3; + + /* "View.MemoryView":421 + * + * cdef is_slice(self, obj): + * if not isinstance(obj, memoryview): # <<<<<<<<<<<<<< + * try: + * obj = memoryview(obj, self.flags|PyBUF_ANY_CONTIGUOUS, + */ } - __pyx_L3:; - /* "View.MemoryView":389 + /* "View.MemoryView":428 * return None * * return obj # <<<<<<<<<<<<<< @@ -8061,7 +9273,7 @@ static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_ __pyx_r = __pyx_v_obj; goto __pyx_L0; - /* "View.MemoryView":381 + /* "View.MemoryView":420 * self.setitem_indexed(index, value) * * cdef is_slice(self, obj): # <<<<<<<<<<<<<< @@ -8083,7 +9295,7 @@ static PyObject *__pyx_memoryview_is_slice(struct __pyx_memoryview_obj *__pyx_v_ return __pyx_r; 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__pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_2 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_2 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 436, __pyx_L1_error) __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; - __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_dst, __pyx_n_s_ndim); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 397; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_dst, __pyx_n_s_ndim); if (unlikely(!__pyx_t_1)) __PYX_ERR(1, 436, __pyx_L1_error) __Pyx_GOTREF(__pyx_t_1); - __pyx_t_3 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 397; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_3 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_3 == (int)-1) && PyErr_Occurred())) __PYX_ERR(1, 436, __pyx_L1_error) __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0; - /* "View.MemoryView":395 + /* "View.MemoryView":434 * cdef __Pyx_memviewslice src_slice * * memoryview_copy_contents(get_slice_from_memview(src, &src_slice)[0], # <<<<<<<<<<<<<< * get_slice_from_memview(dst, &dst_slice)[0], * src.ndim, dst.ndim, self.dtype_is_object) */ - __pyx_t_4 = __pyx_memoryview_copy_contents((__pyx_memoryview_get_slice_from_memoryview(((struct __pyx_memoryview_obj *)__pyx_v_src), (&__pyx_v_src_slice))[0]), (__pyx_memoryview_get_slice_from_memoryview(((struct __pyx_memoryview_obj *)__pyx_v_dst), (&__pyx_v_dst_slice))[0]), __pyx_t_2, __pyx_t_3, __pyx_v_self->dtype_is_object); if (unlikely(__pyx_t_4 == -1)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 395; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_4 = __pyx_memoryview_copy_contents((__pyx_memoryview_get_slice_from_memoryview(((struct __pyx_memoryview_obj *)__pyx_v_src), (&__pyx_v_src_slice))[0]), (__pyx_memoryview_get_slice_from_memoryview(((struct __pyx_memoryview_obj *)__pyx_v_dst), (&__pyx_v_dst_slice))[0]), __pyx_t_2, __pyx_t_3, __pyx_v_self->dtype_is_object); if (unlikely(__pyx_t_4 == -1)) __PYX_ERR(1, 434, __pyx_L1_error) - /* "View.MemoryView":391 + /* "View.MemoryView":430 * return obj * * cdef setitem_slice_assignment(self, dst, src): # <<<<<<<<<<<<<< @@ -8169,7 +9378,7 @@ static PyObject *__pyx_memoryview_setitem_slice_assignment(struct __pyx_memoryvi return __pyx_r; } -/* "View.MemoryView":399 +/* "View.MemoryView":438 * src.ndim, dst.ndim, self.dtype_is_object) * * cdef setitem_slice_assign_scalar(self, memoryview dst, value): # <<<<<<<<<<<<<< @@ -8178,7 +9387,7 @@ static PyObject *__pyx_memoryview_setitem_slice_assignment(struct __pyx_memoryvi */ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memoryview_obj *__pyx_v_self, struct __pyx_memoryview_obj *__pyx_v_dst, PyObject *__pyx_v_value) { - int __pyx_v_array[128]; 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- /* "View.MemoryView":408 + /* "View.MemoryView":447 * dst_slice = get_slice_from_memview(dst, &tmp_slice) * * if <size_t>self.view.itemsize > sizeof(array): # <<<<<<<<<<<<<< @@ -8229,7 +9435,7 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor __pyx_t_1 = ((((size_t)__pyx_v_self->view.itemsize) > (sizeof(__pyx_v_array))) != 0); if (__pyx_t_1) { - /* "View.MemoryView":409 + /* "View.MemoryView":448 * * if <size_t>self.view.itemsize > sizeof(array): * tmp = PyMem_Malloc(self.view.itemsize) # <<<<<<<<<<<<<< @@ -8238,7 +9444,7 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor */ __pyx_v_tmp = PyMem_Malloc(__pyx_v_self->view.itemsize); - /* "View.MemoryView":410 + /* "View.MemoryView":449 * if <size_t>self.view.itemsize > sizeof(array): * tmp = PyMem_Malloc(self.view.itemsize) * if tmp == NULL: # <<<<<<<<<<<<<< @@ -8248,17 +9454,25 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor __pyx_t_1 = ((__pyx_v_tmp == NULL) != 0); if (__pyx_t_1) { - /* "View.MemoryView":411 + /* "View.MemoryView":450 * tmp = PyMem_Malloc(self.view.itemsize) * if tmp == NULL: * raise MemoryError # <<<<<<<<<<<<<< * item = tmp * else: */ - PyErr_NoMemory(); {__pyx_filename = __pyx_f[1]; __pyx_lineno = 411; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + PyErr_NoMemory(); __PYX_ERR(1, 450, __pyx_L1_error) + + /* "View.MemoryView":449 + * if <size_t>self.view.itemsize > sizeof(array): + * tmp = PyMem_Malloc(self.view.itemsize) + * if tmp == NULL: # <<<<<<<<<<<<<< + * raise MemoryError + * item = tmp + */ } - /* "View.MemoryView":412 + /* "View.MemoryView":451 * if tmp == NULL: * raise MemoryError * item = tmp # <<<<<<<<<<<<<< @@ -8266,22 +9480,30 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor * item = <void *> array */ __pyx_v_item = __pyx_v_tmp; + + /* "View.MemoryView":447 + * dst_slice = get_slice_from_memview(dst, &tmp_slice) + * + * if <size_t>self.view.itemsize > sizeof(array): # <<<<<<<<<<<<<< + * tmp = PyMem_Malloc(self.view.itemsize) + * if tmp == NULL: + */ goto __pyx_L3; } - /*else*/ { - /* "View.MemoryView":414 + /* "View.MemoryView":453 * item = tmp * else: * item = <void *> array # <<<<<<<<<<<<<< * * try: */ + /*else*/ { __pyx_v_item = ((void *)__pyx_v_array); } __pyx_L3:; - /* "View.MemoryView":416 + /* "View.MemoryView":455 * item = <void *> array * * try: # <<<<<<<<<<<<<< @@ -8290,7 +9512,7 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor */ /*try:*/ { - /* "View.MemoryView":417 + /* "View.MemoryView":456 * * try: * if self.dtype_is_object: # <<<<<<<<<<<<<< @@ -8300,7 +9522,7 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor __pyx_t_1 = (__pyx_v_self->dtype_is_object != 0); if (__pyx_t_1) { - /* "View.MemoryView":418 + /* "View.MemoryView":457 * try: * if self.dtype_is_object: * (<PyObject **> item)[0] = <PyObject *> value # <<<<<<<<<<<<<< @@ -8308,24 +9530,32 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor * self.assign_item_from_object(<char *> item, value) */ (((PyObject **)__pyx_v_item)[0]) = ((PyObject *)__pyx_v_value); 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if (__pyx_t_1) { - /* "View.MemoryView":425 + /* "View.MemoryView":464 * * if self.view.suboffsets != NULL: * assert_direct_dimensions(self.view.suboffsets, self.view.ndim) # <<<<<<<<<<<<<< * slice_assign_scalar(dst_slice, dst.view.ndim, self.view.itemsize, * item, self.dtype_is_object) */ - __pyx_t_2 = assert_direct_dimensions(__pyx_v_self->view.suboffsets, __pyx_v_self->view.ndim); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 425; __pyx_clineno = __LINE__; goto __pyx_L6_error;} + __pyx_t_2 = assert_direct_dimensions(__pyx_v_self->view.suboffsets, __pyx_v_self->view.ndim); if (unlikely(!__pyx_t_2)) __PYX_ERR(1, 464, __pyx_L6_error) __Pyx_GOTREF(__pyx_t_2); __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; - goto __pyx_L9; + + /* "View.MemoryView":463 + * + * + * if self.view.suboffsets != NULL: # <<<<<<<<<<<<<< + * assert_direct_dimensions(self.view.suboffsets, self.view.ndim) + * slice_assign_scalar(dst_slice, dst.view.ndim, self.view.itemsize, + */ } - __pyx_L9:; - /* "View.MemoryView":426 + /* "View.MemoryView":465 * if self.view.suboffsets != NULL: * assert_direct_dimensions(self.view.suboffsets, self.view.ndim) * slice_assign_scalar(dst_slice, dst.view.ndim, self.view.itemsize, # <<<<<<<<<<<<<< @@ -8359,7 +9595,7 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor __pyx_memoryview_slice_assign_scalar(__pyx_v_dst_slice, __pyx_v_dst->view.ndim, __pyx_v_self->view.itemsize, __pyx_v_item, __pyx_v_self->dtype_is_object); } - /* "View.MemoryView":429 + /* "View.MemoryView":468 * item, self.dtype_is_object) * finally: * PyMem_Free(tmp) # <<<<<<<<<<<<<< @@ -8372,8 +9608,10 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor goto __pyx_L7; } /*exception exit:*/{ + __Pyx_PyThreadState_declare __pyx_L6_error:; __pyx_t_6 = 0; __pyx_t_7 = 0; __pyx_t_8 = 0; __pyx_t_9 = 0; __pyx_t_10 = 0; __pyx_t_11 = 0; + __Pyx_PyThreadState_assign __Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0; if (PY_MAJOR_VERSION >= 3) __Pyx_ExceptionSwap(&__pyx_t_9, &__pyx_t_10, &__pyx_t_11); if ((PY_MAJOR_VERSION < 3) || unlikely(__Pyx_GetException(&__pyx_t_6, &__pyx_t_7, &__pyx_t_8) < 0)) __Pyx_ErrFetch(&__pyx_t_6, &__pyx_t_7, &__pyx_t_8); @@ -8387,6 +9625,7 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor { PyMem_Free(__pyx_v_tmp); } + __Pyx_PyThreadState_assign if (PY_MAJOR_VERSION >= 3) { __Pyx_XGIVEREF(__pyx_t_9); __Pyx_XGIVEREF(__pyx_t_10); @@ -8404,7 +9643,7 @@ static PyObject *__pyx_memoryview_setitem_slice_assign_scalar(struct __pyx_memor __pyx_L7:; 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if (unlikely(__pyx_t_1 == NULL)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 432; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_1 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->get_item_pointer(__pyx_v_self, __pyx_v_index); if (unlikely(__pyx_t_1 == NULL)) __PYX_ERR(1, 471, __pyx_L1_error) __pyx_v_itemp = __pyx_t_1; - /* "View.MemoryView":433 + /* "View.MemoryView":472 * cdef setitem_indexed(self, index, value): * cdef char *itemp = self.get_item_pointer(index) * self.assign_item_from_object(itemp, value) # <<<<<<<<<<<<<< * * cdef convert_item_to_object(self, char *itemp): */ - __pyx_t_2 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->assign_item_from_object(__pyx_v_self, __pyx_v_itemp, __pyx_v_value); if (unlikely(!__pyx_t_2)) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 433; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_t_2 = ((struct __pyx_vtabstruct_memoryview *)__pyx_v_self->__pyx_vtab)->assign_item_from_object(__pyx_v_self, __pyx_v_itemp, __pyx_v_value); 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