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-rw-r--r--src/silx/io/test/test_octaveh5.py152
1 files changed, 97 insertions, 55 deletions
diff --git a/src/silx/io/test/test_octaveh5.py b/src/silx/io/test/test_octaveh5.py
index 19b8ad6..479ef85 100644
--- a/src/silx/io/test/test_octaveh5.py
+++ b/src/silx/io/test/test_octaveh5.py
@@ -42,41 +42,84 @@ except ImportError:
class TestOctaveH5(unittest.TestCase):
@staticmethod
def _get_struct_FT():
- return {
- 'NO_CHECK': 0.0, 'SHOWSLICE': 1.0, 'DOTOMO': 1.0, 'DATABASE': 0.0, 'ANGLE_OFFSET': 0.0,
- 'VOLSELECTION_REMEMBER': 0.0, 'NUM_PART': 4.0, 'VOLOUTFILE': 0.0, 'RINGSCORRECTION': 0.0,
- 'DO_TEST_SLICE': 1.0, 'ZEROOFFMASK': 1.0, 'VERSION': 'fastomo3 version 2.0',
- 'CORRECT_SPIKES_THRESHOLD': 0.040000000000000001, 'SHOWPROJ': 0.0, 'HALF_ACQ': 0.0,
- 'ANGLE_OFFSET_VALUE': 0.0, 'FIXEDSLICE': 'middle', 'VOLSELECT': 'total' }
+ return {
+ "NO_CHECK": 0.0,
+ "SHOWSLICE": 1.0,
+ "DOTOMO": 1.0,
+ "DATABASE": 0.0,
+ "ANGLE_OFFSET": 0.0,
+ "VOLSELECTION_REMEMBER": 0.0,
+ "NUM_PART": 4.0,
+ "VOLOUTFILE": 0.0,
+ "RINGSCORRECTION": 0.0,
+ "DO_TEST_SLICE": 1.0,
+ "ZEROOFFMASK": 1.0,
+ "VERSION": "fastomo3 version 2.0",
+ "CORRECT_SPIKES_THRESHOLD": 0.040000000000000001,
+ "SHOWPROJ": 0.0,
+ "HALF_ACQ": 0.0,
+ "ANGLE_OFFSET_VALUE": 0.0,
+ "FIXEDSLICE": "middle",
+ "VOLSELECT": "total",
+ }
+
@staticmethod
def _get_struct_PYHSTEXE():
return {
- 'EXE': 'PyHST2_2015d', 'VERBOSE': 0.0, 'OFFV': 'PyHST2_2015d', 'TOMO': 0.0,
- 'VERBOSE_FILE': 'pyhst_out.txt', 'DIR': '/usr/bin/', 'OFFN': 'pyhst2'}
+ "EXE": "PyHST2_2015d",
+ "VERBOSE": 0.0,
+ "OFFV": "PyHST2_2015d",
+ "TOMO": 0.0,
+ "VERBOSE_FILE": "pyhst_out.txt",
+ "DIR": "/usr/bin/",
+ "OFFN": "pyhst2",
+ }
@staticmethod
def _get_struct_FTAXIS():
return {
- 'POSITION_VALUE': 12345.0, 'COR_ERROR': 0.0, 'FILESDURINGSCAN': 0.0, 'PLOTFIGURE': 1.0,
- 'DIM1': 0.0, 'OVERSAMPLING': 5.0, 'TO_THE_CENTER': 1.0, 'POSITION': 'fixed',
- 'COR_POSITION': 0.0, 'HA': 0.0 }
-
+ "POSITION_VALUE": 12345.0,
+ "COR_ERROR": 0.0,
+ "FILESDURINGSCAN": 0.0,
+ "PLOTFIGURE": 1.0,
+ "DIM1": 0.0,
+ "OVERSAMPLING": 5.0,
+ "TO_THE_CENTER": 1.0,
+ "POSITION": "fixed",
+ "COR_POSITION": 0.0,
+ "HA": 0.0,
+ }
+
@staticmethod
def _get_struct_PAGANIN():
return {
- 'MKEEP_MASK': 0.0, 'UNSHARP_SIGMA': 0.80000000000000004, 'DILATE': 2.0, 'UNSHARP_COEFF': 3.0,
- 'MEDIANR': 4.0, 'DB': 500.0, 'MKEEP_ABS': 0.0, 'MODE': 0.0, 'THRESHOLD': 0.5,
- 'MKEEP_BONE': 0.0, 'DB2': 100.0, 'MKEEP_CORR': 0.0, 'MKEEP_SOFT': 0.0 }
+ "MKEEP_MASK": 0.0,
+ "UNSHARP_SIGMA": 0.80000000000000004,
+ "DILATE": 2.0,
+ "UNSHARP_COEFF": 3.0,
+ "MEDIANR": 4.0,
+ "DB": 500.0,
+ "MKEEP_ABS": 0.0,
+ "MODE": 0.0,
+ "THRESHOLD": 0.5,
+ "MKEEP_BONE": 0.0,
+ "DB2": 100.0,
+ "MKEEP_CORR": 0.0,
+ "MKEEP_SOFT": 0.0,
+ }
@staticmethod
def _get_struct_BEAMGEO():
- return {'DIST': 55.0, 'SY': 0.0, 'SX': 0.0, 'TYPE': 'p'}
-
+ return {"DIST": 55.0, "SY": 0.0, "SX": 0.0, "TYPE": "p"}
def setUp(self):
- self.tempdir = tempfile.mkdtemp()
- self.test_3_6_fname = os.path.join(self.tempdir, "silx_tmp_t00_octaveTest_3_6.h5")
- self.test_3_8_fname = os.path.join(self.tempdir, "silx_tmp_t00_octaveTest_3_8.h5")
+ self.tempdir = tempfile.mkdtemp()
+ self.test_3_6_fname = os.path.join(
+ self.tempdir, "silx_tmp_t00_octaveTest_3_6.h5"
+ )
+ self.test_3_8_fname = os.path.join(
+ self.tempdir, "silx_tmp_t00_octaveTest_3_8.h5"
+ )
def tearDown(self):
if os.path.isfile(self.test_3_6_fname):
@@ -88,68 +131,67 @@ class TestOctaveH5(unittest.TestCase):
"""
Simple test to write and reaf the structure compatible with the octave h5 using structure.
This test is for # test for octave version > 3.8
- """
+ """
writer = Octaveh5()
- writer.open(self.test_3_8_fname, 'a')
+ writer.open(self.test_3_8_fname, "a")
# step 1 writing the file
- writer.write('FT', self._get_struct_FT())
- writer.write('PYHSTEXE', self._get_struct_PYHSTEXE())
- writer.write('FTAXIS', self._get_struct_FTAXIS())
- writer.write('PAGANIN', self._get_struct_PAGANIN())
- writer.write('BEAMGEO', self._get_struct_BEAMGEO())
+ writer.write("FT", self._get_struct_FT())
+ writer.write("PYHSTEXE", self._get_struct_PYHSTEXE())
+ writer.write("FTAXIS", self._get_struct_FTAXIS())
+ writer.write("PAGANIN", self._get_struct_PAGANIN())
+ writer.write("BEAMGEO", self._get_struct_BEAMGEO())
writer.close()
# step 2 reading the file
reader = Octaveh5().open(self.test_3_8_fname)
# 2.1 check FT
- data_readed = reader.get('FT')
- self.assertEqual(data_readed, self._get_struct_FT() )
+ data_readed = reader.get("FT")
+ self.assertEqual(data_readed, self._get_struct_FT())
# 2.2 check PYHSTEXE
- data_readed = reader.get('PYHSTEXE')
- self.assertEqual(data_readed, self._get_struct_PYHSTEXE() )
+ data_readed = reader.get("PYHSTEXE")
+ self.assertEqual(data_readed, self._get_struct_PYHSTEXE())
# 2.3 check FTAXIS
- data_readed = reader.get('FTAXIS')
- self.assertEqual(data_readed, self._get_struct_FTAXIS() )
+ data_readed = reader.get("FTAXIS")
+ self.assertEqual(data_readed, self._get_struct_FTAXIS())
# 2.4 check PAGANIN
- data_readed = reader.get('PAGANIN')
- self.assertEqual(data_readed, self._get_struct_PAGANIN() )
+ data_readed = reader.get("PAGANIN")
+ self.assertEqual(data_readed, self._get_struct_PAGANIN())
# 2.5 check BEAMGEO
- data_readed = reader.get('BEAMGEO')
- self.assertEqual(data_readed, self._get_struct_BEAMGEO() )
+ data_readed = reader.get("BEAMGEO")
+ self.assertEqual(data_readed, self._get_struct_BEAMGEO())
reader.close()
def testWritedIsReadedOldOctaveVersion(self):
- """The same test as testWritedIsReaded but for octave version < 3.8
- """
+ """The same test as testWritedIsReaded but for octave version < 3.8"""
# test for octave version < 3.8
writer = Octaveh5(3.6)
- writer.open(self.test_3_6_fname, 'a')
+ writer.open(self.test_3_6_fname, "a")
# step 1 writing the file
- writer.write('FT', self._get_struct_FT())
- writer.write('PYHSTEXE', self._get_struct_PYHSTEXE())
- writer.write('FTAXIS', self._get_struct_FTAXIS())
- writer.write('PAGANIN', self._get_struct_PAGANIN())
- writer.write('BEAMGEO', self._get_struct_BEAMGEO())
+ writer.write("FT", self._get_struct_FT())
+ writer.write("PYHSTEXE", self._get_struct_PYHSTEXE())
+ writer.write("FTAXIS", self._get_struct_FTAXIS())
+ writer.write("PAGANIN", self._get_struct_PAGANIN())
+ writer.write("BEAMGEO", self._get_struct_BEAMGEO())
writer.close()
# step 2 reading the file
reader = Octaveh5(3.6).open(self.test_3_6_fname)
# 2.1 check FT
- data_readed = reader.get('FT')
- self.assertEqual(data_readed, self._get_struct_FT() )
+ data_readed = reader.get("FT")
+ self.assertEqual(data_readed, self._get_struct_FT())
# 2.2 check PYHSTEXE
- data_readed = reader.get('PYHSTEXE')
- self.assertEqual(data_readed, self._get_struct_PYHSTEXE() )
+ data_readed = reader.get("PYHSTEXE")
+ self.assertEqual(data_readed, self._get_struct_PYHSTEXE())
# 2.3 check FTAXIS
- data_readed = reader.get('FTAXIS')
- self.assertEqual(data_readed, self._get_struct_FTAXIS() )
+ data_readed = reader.get("FTAXIS")
+ self.assertEqual(data_readed, self._get_struct_FTAXIS())
# 2.4 check PAGANIN
- data_readed = reader.get('PAGANIN')
- self.assertEqual(data_readed, self._get_struct_PAGANIN() )
+ data_readed = reader.get("PAGANIN")
+ self.assertEqual(data_readed, self._get_struct_PAGANIN())
# 2.5 check BEAMGEO
- data_readed = reader.get('BEAMGEO')
- self.assertEqual(data_readed, self._get_struct_BEAMGEO() )
+ data_readed = reader.get("BEAMGEO")
+ self.assertEqual(data_readed, self._get_struct_BEAMGEO())
reader.close()
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