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Diffstat (limited to 'src/silx/io/test/test_write_to_h5.py')
-rw-r--r-- | src/silx/io/test/test_write_to_h5.py | 118 |
1 files changed, 118 insertions, 0 deletions
diff --git a/src/silx/io/test/test_write_to_h5.py b/src/silx/io/test/test_write_to_h5.py new file mode 100644 index 0000000..06149c9 --- /dev/null +++ b/src/silx/io/test/test_write_to_h5.py @@ -0,0 +1,118 @@ +# coding: utf-8 +# /*########################################################################## +# Copyright (C) 2021 European Synchrotron Radiation Facility +# +# Permission is hereby granted, free of charge, to any person obtaining a copy +# of this software and associated documentation files (the "Software"), to deal +# in the Software without restriction, including without limitation the rights +# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the Software is +# furnished to do so, subject to the following conditions: +# +# The above copyright notice and this permission notice shall be included in +# all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +# THE SOFTWARE. +# +# ############################################################################*/ +"""Test silx.io.convert.write_to_h5""" + + +import h5py +import numpy +from silx.io import spech5 + +from silx.io.convert import write_to_h5 +from silx.io.dictdump import h5todict +from silx.io import commonh5 +from silx.io.spech5 import SpecH5 + + +def test_with_commonh5(tmp_path): + """Test write_to_h5 with commonh5 input""" + fobj = commonh5.File("filename.txt", mode="w") + group = fobj.create_group("group") + dataset = group.create_dataset("dataset", data=numpy.array(50)) + group["soft_link"] = dataset # Create softlink + + output_filepath = tmp_path / "output.h5" + write_to_h5(fobj, str(output_filepath)) + + assert h5todict(str(output_filepath)) == { + 'group': {'dataset': numpy.array(50), 'soft_link': numpy.array(50)}, + } + with h5py.File(output_filepath, mode="r") as h5file: + soft_link = h5file.get("/group/soft_link", getlink=True) + assert isinstance(soft_link, h5py.SoftLink) + assert soft_link.path == "/group/dataset" + + +def test_with_hdf5(tmp_path): + """Test write_to_h5 with HDF5 file input""" + filepath = tmp_path / "base.h5" + with h5py.File(filepath, mode="w") as h5file: + h5file["group/dataset"] = 50 + h5file["group/soft_link"] = h5py.SoftLink("/group/dataset") + h5file["group/external_link"] = h5py.ExternalLink("base.h5", "/group/dataset") + + output_filepath = tmp_path / "output.h5" + write_to_h5(str(filepath), str(output_filepath)) + assert h5todict(str(output_filepath)) == { + 'group': {'dataset': 50, 'soft_link': 50}, + } + with h5py.File(output_filepath, mode="r") as h5file: + soft_link = h5file.get("group/soft_link", getlink=True) + assert isinstance(soft_link, h5py.SoftLink) + assert soft_link.path == "/group/dataset" + + +def test_with_spech5(tmp_path): + """Test write_to_h5 with SpecH5 input""" + filepath = tmp_path / "file.spec" + filepath.write_bytes( + bytes( +"""#F /tmp/sf.dat + +#S 1 cmd +#L a b +1 2 +""", + encoding='ascii') + ) + + output_filepath = tmp_path / "output.h5" + with spech5.SpecH5(str(filepath)) as spech5file: + write_to_h5(spech5file, str(output_filepath)) + print(h5todict(str(output_filepath))) + + def assert_equal(item1, item2): + if isinstance(item1, dict): + assert tuple(item1.keys()) == tuple(item2.keys()) + for key in item1.keys(): + assert_equal(item1[key], item2[key]) + else: + numpy.array_equal(item1, item2) + + assert_equal(h5todict(str(output_filepath)), { + '1.1': { + 'instrument': { + 'positioners': {}, + 'specfile': { + 'file_header': ['#F /tmp/sf.dat'], + 'scan_header': ['#S 1 cmd', '#L a b'], + }, + }, + 'measurement': { + 'a': [1.], + 'b': [2.], + }, + 'start_time': '', + 'title': 'cmd', + }, + }) |