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Diffstat (limited to 'src/silx/math/fit/filters/src/strip.c')
-rw-r--r-- | src/silx/math/fit/filters/src/strip.c | 118 |
1 files changed, 118 insertions, 0 deletions
diff --git a/src/silx/math/fit/filters/src/strip.c b/src/silx/math/fit/filters/src/strip.c new file mode 100644 index 0000000..dec0742 --- /dev/null +++ b/src/silx/math/fit/filters/src/strip.c @@ -0,0 +1,118 @@ +#/*########################################################################## +# Copyright (c) 2004-2016 European Synchrotron Radiation Facility +# +# Permission is hereby granted, free of charge, to any person obtaining a copy +# of this software and associated documentation files (the "Software"), to deal +# in the Software without restriction, including without limitation the rights +# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +# copies of the Software, and to permit persons to whom the Software is +# furnished to do so, subject to the following conditions: +# +# The above copyright notice and this permission notice shall be included in +# all copies or substantial portions of the Software. +# +# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +# THE SOFTWARE. +# +#############################################################################*/ +/* + This file provides a background strip function, to isolate low frequency + background signal from a spectrum (and later substact it from the signal + to be left only with the peaks to be fitted). + + It is adapted from PyMca source file "SpecFitFuns.c". The main difference + with the original code is that this code does not handle the python + wrapping, which is done elsewhere using cython. + + Authors: V.A. Sole, P. Knobel + License: MIT + Last modified: 17/06/2016 +*/ + +#include <string.h> + +#include <stdio.h> + +/* strip(double* input, double c, long niter, double* output) + + The strip background is probably PyMca's most popular background model. + + In its simplest implementation it is just as an iterative procedure depending + on two parameters. These parameters are the strip background width w, and the + strip background number of iterations. At each iteration, if the contents of + channel i, y(i), is above the average of the contents of the channels at w + channels of distance, y(i-w) and y(i+w), y(i) is replaced by the average. + At the end of the process we are left with something that resembles a spectrum + in which the peaks have been "stripped". + + Parameters: + + - input: Input data array + - c: scaling factor applied to the average of y(i-w) and y(i+w) before + comparing to y(i) + - niter: number of iterations + - deltai: operator width (in number of channels) + - anchors: Array of anchors, indices of points that will not be + modified during the stripping procedure. + - output: output array + +*/ +int strip(double* input, long len_input, + double c, long niter, int deltai, + long* anchors, long len_anchors, + double* output) +{ + long iter_index, array_index, anchor_index, anchor; + int anchor_nearby_flag; + double t_mean; + + memcpy(output, input, len_input * sizeof(double)); + + if (deltai <=0) deltai = 1; + + if (len_input < (2*deltai+1)) return(-1); + + if (len_anchors > 0) { + for (iter_index = 0; iter_index < niter; iter_index++) { + for (array_index = deltai; array_index < len_input - deltai; array_index++) { + /* if index is within +- deltai of an anchor, don't do anything */ + anchor_nearby_flag = 0; + for (anchor_index=0; anchor_index<len_anchors; anchor_index++) + { + anchor = anchors[anchor_index]; + if (array_index > (anchor - deltai) && array_index < (anchor + deltai)) + { + anchor_nearby_flag = 1; + break; + } + } + /* skip this array_index index */ + if (anchor_nearby_flag) { + continue; + } + + t_mean = 0.5 * (input[array_index-deltai] + input[array_index+deltai]); + if (input[array_index] > (t_mean * c)) + output[array_index] = t_mean; + } + memcpy(input, output, len_input * sizeof(double)); + } + } + else { + for (iter_index = 0; iter_index < niter; iter_index++) { + for (array_index=deltai; array_index < len_input - deltai; array_index++) { + t_mean = 0.5 * (input[array_index-deltai] + input[array_index+deltai]); + + if (input[array_index] > (t_mean * c)) + output[array_index] = t_mean; + } + memcpy(input, output, len_input * sizeof(double)); + } + } + return(0); +} |