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+# coding: utf-8
+# /*##########################################################################
+# Copyright (C) 2016 European Synchrotron Radiation Facility
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+# THE SOFTWARE.
+#
+# ############################################################################*/
+import numpy
+import unittest
+from silx.math.fit import filters
+from silx.math.fit import functions
+from silx.test.utils import add_relative_noise
+
+
+class TestSmooth(unittest.TestCase):
+ """
+ Unit tests of smoothing functions.
+
+ Test that the difference between a synthetic curve with 5% added random
+ noise and the result of smoothing that signal is less than 5%. We compare
+ the sum of all samples in each curve.
+ """
+ def setUp(self):
+ x = numpy.arange(5000)
+ # (height1, center1, fwhm1, beamfwhm...)
+ slit_params = (50, 500, 200, 100,
+ 50, 600, 80, 30,
+ 20, 2000, 150, 150,
+ 50, 2250, 110, 100,
+ 40, 3000, 50, 10,
+ 23, 4980, 250, 20)
+
+ self.y1 = functions.sum_slit(x, *slit_params)
+ # 5% noise
+ self.y1 = add_relative_noise(self.y1, 5.)
+
+ # (height1, center1, fwhm1...)
+ step_params = (50, 500, 200,
+ 50, 600, 80,
+ 20, 2000, 150,
+ 50, 2250, 110,
+ 40, 3000, 50,
+ 23, 4980, 250,)
+
+ self.y2 = functions.sum_stepup(x, *step_params)
+ # 5% noise
+ self.y2 = add_relative_noise(self.y2, 5.)
+
+ self.y3 = functions.sum_stepdown(x, *step_params)
+ # 5% noise
+ self.y3 = add_relative_noise(self.y3, 5.)
+
+ def tearDown(self):
+ pass
+
+ def testSavitskyGolay(self):
+ npts = 25
+ for y in [self.y1, self.y2, self.y3]:
+ smoothed_y = filters.savitsky_golay(y, npoints=npts)
+
+ # we added +-5% of random noise. The difference must be much lower
+ # than 5%.
+ diff = abs(sum(smoothed_y) - sum(y)) / sum(y)
+ self.assertLess(diff, 0.05,
+ "Difference between data with 5%% noise and " +
+ "smoothed data is > 5%% (%f %%)" % (diff * 100))
+
+ # Try various smoothing levels
+ npts += 25
+
+ def testSmooth1d(self):
+ """Test the 1D smoothing against the formula
+ ys[i] = (y[i-1] + 2 * y[i] + y[i+1]) / 4 (for 1 < i < n-1)"""
+ smoothed_y = filters.smooth1d(self.y1)
+
+ for i in range(1, len(self.y1) - 1):
+ self.assertAlmostEqual(4 * smoothed_y[i],
+ self.y1[i-1] + 2 * self.y1[i] + self.y1[i+1])
+
+ def testSmooth2d(self):
+ """Test that a 2D smoothing is the same as two successive and
+ orthogonal 1D smoothings"""
+ x = numpy.arange(10000)
+
+ noise = 2 * numpy.random.random(10000) - 1
+ noise *= 0.05
+ y = x * (1 + noise)
+
+ y.shape = (100, 100)
+
+ smoothed_y = filters.smooth2d(y)
+
+ intermediate_smooth = numpy.zeros_like(y)
+ expected_smooth = numpy.zeros_like(y)
+ # smooth along first dimension
+ for i in range(0, y.shape[0]):
+ intermediate_smooth[i, :] = filters.smooth1d(y[i, :])
+
+ # smooth along second dimension
+ for j in range(0, y.shape[1]):
+ expected_smooth[:, j] = filters.smooth1d(intermediate_smooth[:, j])
+
+ for i in range(0, y.shape[0]):
+ for j in range(0, y.shape[1]):
+ self.assertAlmostEqual(smoothed_y[i, j],
+ expected_smooth[i, j])