# -*- coding: utf-8 -*- # # Project: silx # https://github.com/silx-kit/silx # # Copyright (C) 2012-2016 European Synchrotron Radiation Facility, Grenoble, France # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN # THE SOFTWARE. __authors__ = ["V. Valls"] __license__ = "MIT" __date__ = "18/04/2018" import unittest import numpy from .._mergeimpl import MarchingSquaresMergeImpl class TestMergeImplApi(unittest.TestCase): def test_image_not_an_array(self): bad_image = 1 self.assertRaises(ValueError, MarchingSquaresMergeImpl, bad_image) def test_image_bad_dim(self): bad_image = numpy.array([[[1.0]]]) self.assertRaises(ValueError, MarchingSquaresMergeImpl, bad_image) def test_image_not_big_enough(self): bad_image = numpy.array([[1.0, 1.0, 1.0, 1.0]]) self.assertRaises(ValueError, MarchingSquaresMergeImpl, bad_image) def test_mask_not_an_array(self): image = numpy.array([[1.0, 1.0], [1.0, 1.0]]) bad_mask = 1 self.assertRaises(ValueError, MarchingSquaresMergeImpl, image, bad_mask) def test_mask_not_match(self): image = numpy.array([[1.0, 1.0], [1.0, 1.0]]) bad_mask = numpy.array([[1.0, 1.0]]) self.assertRaises(ValueError, MarchingSquaresMergeImpl, image, bad_mask) def test_ok_anyway_bad_type(self): image = numpy.array([[1.0, 1.0], [1.0, 1.0]], dtype=numpy.int32) mask = numpy.array([[1.0, 1.0], [1.0, 1.0]], dtype=numpy.float32) MarchingSquaresMergeImpl(image, mask) def test_find_contours_result(self): image = numpy.zeros((2, 2)) image[0, 0] = 1 ms = MarchingSquaresMergeImpl(image) polygons = ms.find_contours(0.5) self.assertIsInstance(polygons, list) self.assertTrue(len(polygons), 1) self.assertIsInstance(polygons[0], numpy.ndarray) self.assertEqual(polygons[0].shape[1], 2) self.assertEqual(polygons[0].dtype.kind, "f") def test_find_pixels_result(self): image = numpy.zeros((2, 2)) image[0, 0] = 1 ms = MarchingSquaresMergeImpl(image) pixels = ms.find_pixels(0.5) self.assertIsInstance(pixels, numpy.ndarray) self.assertEqual(pixels.shape[1], 2) self.assertEqual(pixels.dtype.kind, "i") def test_find_contours_empty_result(self): image = numpy.zeros((2, 2)) ms = MarchingSquaresMergeImpl(image) polygons = ms.find_contours(0.5) self.assertIsInstance(polygons, list) self.assertEqual(len(polygons), 0) def test_find_pixels_empty_result(self): image = numpy.zeros((2, 2)) ms = MarchingSquaresMergeImpl(image) pixels = ms.find_pixels(0.5) self.assertIsInstance(pixels, numpy.ndarray) self.assertEqual(pixels.shape[1], 2) self.assertEqual(pixels.shape[0], 0) self.assertEqual(pixels.dtype.kind, "i") def test_find_contours_yx_result(self): image = numpy.zeros((2, 2)) image[1, 0] = 1 ms = MarchingSquaresMergeImpl(image) polygons = ms.find_contours(0.5) polygon = polygons[0] self.assertTrue((polygon == (0.5, 0)).any()) self.assertTrue((polygon == (1, 0.5)).any()) def test_find_pixels_yx_result(self): image = numpy.zeros((2, 2)) image[1, 0] = 1 ms = MarchingSquaresMergeImpl(image) pixels = ms.find_pixels(0.5) self.assertTrue((pixels == (1, 0)).any()) class TestMergeImplContours(unittest.TestCase): def test_merge_segments(self): image = numpy.zeros((4, 4)) image[(2, 3), :] = 1 ms = MarchingSquaresMergeImpl(image) polygons = ms.find_contours(0.5) self.assertEqual(len(polygons), 1) def test_merge_segments_2(self): image = numpy.zeros((4, 4)) image[(2, 3), :] = 1 image[2, 2] = 0 ms = MarchingSquaresMergeImpl(image) polygons = ms.find_contours(0.5) self.assertEqual(len(polygons), 1) def test_merge_tiles(self): image = numpy.zeros((4, 4)) image[(2, 3), :] = 1 ms = MarchingSquaresMergeImpl(image, group_size=2) polygons = ms.find_contours(0.5) self.assertEqual(len(polygons), 1) def test_fully_masked(self): image = numpy.zeros((5, 5)) image[(2, 3), :] = 1 mask = numpy.ones((5, 5)) ms = MarchingSquaresMergeImpl(image, mask) polygons = ms.find_contours(0.5) self.assertEqual(len(polygons), 0) def test_fully_masked_minmax(self): """This invalidates all the tiles. The route is not the same.""" image = numpy.zeros((5, 5)) image[(2, 3), :] = 1 mask = numpy.ones((5, 5)) ms = MarchingSquaresMergeImpl(image, mask, group_size=2, use_minmax_cache=True) polygons = ms.find_contours(0.5) self.assertEqual(len(polygons), 0) def test_masked_segments(self): image = numpy.zeros((5, 5)) image[(2, 3, 4), :] = 1 mask = numpy.zeros((5, 5)) mask[:, 2] = 1 ms = MarchingSquaresMergeImpl(image, mask) polygons = ms.find_contours(0.5) self.assertEqual(len(polygons), 2) def test_closed_polygon(self): image = numpy.zeros((5, 5)) image[2, 2] = 1 image[1, 2] = 1 image[3, 2] = 1 image[2, 1] = 1 image[2, 3] = 1 mask = None ms = MarchingSquaresMergeImpl(image, mask) polygons = ms.find_contours(0.9) self.assertEqual(len(polygons), 1) self.assertEqual(list(polygons[0][0]), list(polygons[0][-1])) def test_closed_polygon_between_tiles(self): image = numpy.zeros((5, 5)) image[2, 2] = 1 image[1, 2] = 1 image[3, 2] = 1 image[2, 1] = 1 image[2, 3] = 1 mask = None ms = MarchingSquaresMergeImpl(image, mask, group_size=2) polygons = ms.find_contours(0.9) self.assertEqual(len(polygons), 1) self.assertEqual(list(polygons[0][0]), list(polygons[0][-1])) def test_open_polygon(self): image = numpy.zeros((5, 5)) image[2, 2] = 1 image[1, 2] = 1 image[3, 2] = 1 image[2, 1] = 1 image[2, 3] = 1 mask = numpy.zeros((5, 5)) mask[1, 1] = 1 ms = MarchingSquaresMergeImpl(image, mask) polygons = ms.find_contours(0.9) self.assertEqual(len(polygons), 1) self.assertNotEqual(list(polygons[0][0]), list(polygons[0][-1])) def test_ambiguous_pattern(self): image = numpy.zeros((6, 8)) image[(3, 4), :] = 1 image[:, (0, -1)] = 0 image[3, 3] = -0.001 image[4, 4] = 0.0 mask = None ms = MarchingSquaresMergeImpl(image, mask) polygons = ms.find_contours(0.5) self.assertEqual(len(polygons), 2) def test_ambiguous_pattern_2(self): image = numpy.zeros((6, 8)) image[(3, 4), :] = 1 image[:, (0, -1)] = 0 image[3, 3] = +0.001 image[4, 4] = 0.0 mask = None ms = MarchingSquaresMergeImpl(image, mask) polygons = ms.find_contours(0.5) self.assertEqual(len(polygons), 1) def count_closed_polygons(self, polygons): closed = 0 for polygon in polygons: if list(polygon[0]) == list(polygon[-1]): closed += 1 return closed def test_image(self): # example from skimage x, y = numpy.ogrid[-numpy.pi:numpy.pi:100j, -numpy.pi:numpy.pi:100j] image = numpy.sin(numpy.exp((numpy.sin(x)**3 + numpy.cos(y)**2))) mask = None ms = MarchingSquaresMergeImpl(image, mask) polygons = ms.find_contours(0.5) self.assertEqual(len(polygons), 11) self.assertEqual(self.count_closed_polygons(polygons), 3) def test_image_tiled(self): # example from skimage x, y = numpy.ogrid[-numpy.pi:numpy.pi:100j, -numpy.pi:numpy.pi:100j] image = numpy.sin(numpy.exp((numpy.sin(x)**3 + numpy.cos(y)**2))) mask = None ms = MarchingSquaresMergeImpl(image, mask, group_size=50) polygons = ms.find_contours(0.5) self.assertEqual(len(polygons), 11) self.assertEqual(self.count_closed_polygons(polygons), 3) def test_image_tiled_minmax(self): # example from skimage x, y = numpy.ogrid[-numpy.pi:numpy.pi:100j, -numpy.pi:numpy.pi:100j] image = numpy.sin(numpy.exp((numpy.sin(x)**3 + numpy.cos(y)**2))) mask = None ms = MarchingSquaresMergeImpl(image, mask, group_size=50, use_minmax_cache=True) polygons = ms.find_contours(0.5) self.assertEqual(len(polygons), 11) self.assertEqual(self.count_closed_polygons(polygons), 3) def suite(): test_suite = unittest.TestSuite() loadTests = unittest.defaultTestLoader.loadTestsFromTestCase test_suite.addTest(loadTests(TestMergeImplApi)) test_suite.addTest(loadTests(TestMergeImplContours)) return test_suite