# coding: utf-8 # /*########################################################################## # Copyright (C) 2017-2018 European Synchrotron Radiation Facility # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN # THE SOFTWARE. # # ############################################################################*/ """ This module provides :func:`medfilt2d`, a 2D median filter function with the choice between 2 implementations: 'cpp' and 'opencl'. """ __authors__ = ["H. Payno"] __license__ = "MIT" __date__ = "04/05/2017" import logging from silx.math import medianfilter as medianfilter_cpp from silx.opencl import ocl as _ocl if _ocl is not None: from silx.opencl import medfilt as medfilt_opencl else: # No OpenCL device or pyopencl not installed medfilt_opencl = None _logger = logging.getLogger(__name__) MEDFILT_ENGINES = ['cpp', 'opencl'] def medfilt2d(image, kernel_size=3, engine='cpp'): """Apply a median filter on an image. This median filter is using a 'nearest' padding for values past the array edges. If you want more padding options or functionalities for the median filter (conditional filter for example) please have a look at :mod:`silx.math.medianfilter`. :param numpy.ndarray image: the 2D array for which we want to apply the median filter. :param kernel_size: the dimension of the kernel. Kernel size must be odd. If a scalar is given, then it is used as the size in both dimension. Default: (3, 3) :type kernel_size: A int or a list of 2 int (kernel_height, kernel_width) :param engine: the type of implementation to use. Valid values are: 'cpp' (default) and 'opencl' :returns: the array with the median value for each pixel. .. note:: if the opencl implementation is requested but is not present or fails, the cpp implementation is called. """ if engine not in MEDFILT_ENGINES: err = 'silx doesn\'t have an implementation for the requested engine: ' err += '%s' % engine raise ValueError(err) if len(image.shape) is not 2: raise ValueError('medfilt2d deals with arrays of dimension 2 only') if engine == 'cpp': return medianfilter_cpp.medfilt(data=image, kernel_size=kernel_size, conditional=False) elif engine == 'opencl': if medfilt_opencl is None: wrn = 'opencl median filter not available. ' wrn += 'Launching cpp implementation.' _logger.warning(wrn) # instead call the cpp implementation return medianfilter_cpp.medfilt(data=image, kernel_size=kernel_size, conditional=False) else: try: medianfilter = medfilt_opencl.MedianFilter2D(image.shape, devicetype="gpu") res = medianfilter.medfilt2d(image, kernel_size) except(RuntimeError, MemoryError, ImportError): wrn = 'Exception occured in opencl median filter. ' wrn += 'To get more information see debug log.' wrn += 'Launching cpp implementation.' _logger.warning(wrn) _logger.debug("median filter - openCL implementation issue.", exc_info=True) # instead call the cpp implementation res = medianfilter_cpp.medfilt(data=image, kernel_size=kernel_size, conditional=False) return res