# /*########################################################################## # Copyright (C) 2021 European Synchrotron Radiation Facility # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN # THE SOFTWARE. # # ############################################################################*/ """Test silx.io.convert.write_to_h5""" import h5py import numpy from silx.io import spech5 from silx.io.convert import write_to_h5 from silx.io.dictdump import h5todict from silx.io import commonh5 def test_with_commonh5(tmp_path): """Test write_to_h5 with commonh5 input""" fobj = commonh5.File("filename.txt", mode="w") group = fobj.create_group("group") dataset = group.create_dataset("dataset", data=numpy.array(50)) group["soft_link"] = dataset # Create softlink output_filepath = tmp_path / "output.h5" write_to_h5(fobj, str(output_filepath)) assert h5todict(str(output_filepath)) == { "group": {"dataset": numpy.array(50), "soft_link": numpy.array(50)}, } with h5py.File(output_filepath, mode="r") as h5file: soft_link = h5file.get("/group/soft_link", getlink=True) assert isinstance(soft_link, h5py.SoftLink) assert soft_link.path == "/group/dataset" def test_with_hdf5(tmp_path): """Test write_to_h5 with HDF5 file input""" filepath = tmp_path / "base.h5" with h5py.File(filepath, mode="w") as h5file: h5file["group/dataset"] = 50 h5file["group/soft_link"] = h5py.SoftLink("/group/dataset") h5file["group/external_link"] = h5py.ExternalLink("base.h5", "/group/dataset") output_filepath = tmp_path / "output.h5" write_to_h5(str(filepath), str(output_filepath)) assert h5todict(str(output_filepath)) == { "group": {"dataset": 50, "soft_link": 50}, } with h5py.File(output_filepath, mode="r") as h5file: soft_link = h5file.get("group/soft_link", getlink=True) assert isinstance(soft_link, h5py.SoftLink) assert soft_link.path == "/group/dataset" def test_with_spech5(tmp_path): """Test write_to_h5 with SpecH5 input""" filepath = tmp_path / "file.spec" filepath.write_bytes( bytes( """#F /tmp/sf.dat #S 1 cmd #L a b 1 2 """, encoding="ascii", ) ) output_filepath = tmp_path / "output.h5" with spech5.SpecH5(str(filepath)) as spech5file: write_to_h5(spech5file, str(output_filepath)) print(h5todict(str(output_filepath))) def assert_equal(item1, item2): if isinstance(item1, dict): assert tuple(item1.keys()) == tuple(item2.keys()) for key in item1.keys(): assert_equal(item1[key], item2[key]) else: numpy.array_equal(item1, item2) assert_equal( h5todict(str(output_filepath)), { "1.1": { "instrument": { "positioners": {}, "specfile": { "file_header": ["#F /tmp/sf.dat"], "scan_header": ["#S 1 cmd", "#L a b"], }, }, "measurement": { "a": [1.0], "b": [2.0], }, "start_time": "", "title": "cmd", }, }, )