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# coding: utf-8
# /*##########################################################################
# Copyright (C) 2016 European Synchrotron Radiation Facility
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
#
# ############################################################################*/
"""Tests for old specfile wrapper"""
__authors__ = ["P. Knobel"]
__license__ = "MIT"
__date__ = "05/07/2016"
import gc
import locale
import logging
import numpy
import os
import sys
import tempfile
import unittest
logging.basicConfig()
logger1 = logging.getLogger(__name__)
from ..specfilewrapper import Specfile
sftext = """#F /tmp/sf.dat
#E 1455180875
#D Thu Feb 11 09:54:35 2016
#C imaging User = opid17
#U00 user comment first line
#U01 This is a dummy file to test SpecFile parsing
#U02
#U03 last line
#O0 Pslit HGap MRTSlit UP MRTSlit DOWN
#O1 Sslit1 VOff Sslit1 HOff Sslit1 VGap
#o0 pshg mrtu mrtd
#o2 ss1vo ss1ho ss1vg
#J0 Seconds IA ion.mono Current
#J1 xbpmc2 idgap1 Inorm
#S 1 ascan ss1vo -4.55687 -0.556875 40 0.2
#D Thu Feb 11 09:55:20 2016
#T 0.2 (Seconds)
#G0 0
#G1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
#G3 0 0 0 0 0 0 0 0 0
#G4 0
#Q
#P0 180.005 -0.66875 0.87125
#P1 14.74255 16.197579 12.238283
#UMI0 Current AutoM Shutter
#UMI1 192.51 OFF FE open
#UMI2 Refill in 39883 sec, Fill Mode: uniform multibunch / Message: Feb 11 08:00 Delivery:Next Refill at 21:00;
#N 4
#L first column second column 3rd_col
-1.23 5.89 8
8.478100E+01 5 1.56
3.14 2.73 -3.14
1.2 2.3 3.4
#S 25 ascan c3th 1.33245 1.52245 40 0.15
#D Thu Feb 11 10:00:31 2016
#P0 80.005 -1.66875 1.87125
#P1 4.74255 6.197579 2.238283
#N 5
#L column0 column1 col2 col3
0.0 0.1 0.2 0.3
1.0 1.1 1.2 1.3
2.0 2.1 2.2 2.3
3.0 3.1 3.2 3.3
#F /tmp/sf.dat
#E 1455180876
#D Thu Feb 11 09:54:36 2016
#S 1 aaaaaa
#U first duplicate line
#U second duplicate line
#@MCADEV 1
#@MCA %16C
#@CHANN 3 0 2 1
#@CALIB 1 2 3
#N 3
#L uno duo
1 2
@A 0 1 2
3 4
@A 3.1 4 5
5 6
@A 6 7.7 8
"""
class TestSpecfilewrapper(unittest.TestCase):
@classmethod
def setUpClass(cls):
fd, cls.fname1 = tempfile.mkstemp(text=False)
if sys.version < '3.0':
os.write(fd, sftext)
else:
os.write(fd, bytes(sftext, 'ascii'))
os.close(fd)
fd2, cls.fname2 = tempfile.mkstemp(text=False)
if sys.version < '3.0':
os.write(fd2, sftext[370:-97])
else:
os.write(fd2, bytes(sftext[370:-97], 'ascii'))
os.close(fd2)
@classmethod
def tearDownClass(cls):
os.unlink(cls.fname1)
os.unlink(cls.fname2)
def setUp(self):
self.sf = Specfile(self.fname1)
self.scan1 = self.sf[0]
self.scan1_2 = self.sf.select("1.2")
self.scan25 = self.sf.select("25.1")
def tearDown(self):
del self.sf
del self.scan1
del self.scan1_2
del self.scan25
gc.collect()
def test_number_of_scans(self):
self.assertEqual(3, len(self.sf))
def test_list_of_scan_indices(self):
self.assertEqual(self.sf.list(),
'1,25,1')
self.assertEqual(self.sf.keys(),
["1.1", "25.1", "1.2"])
def test_scan_headers(self):
self.assertEqual(self.scan25.header('S'),
["#S 25 ascan c3th 1.33245 1.52245 40 0.15"])
self.assertEqual(self.scan1.header("G0"), ['#G0 0'])
# parsing headers with long keys
# parsing empty headers
self.assertEqual(self.scan1.header('Q'), ['#Q '])
def test_file_headers(self):
self.assertEqual(self.scan1.header("E"),
['#E 1455180875'])
self.assertEqual(self.sf.title(),
"imaging")
self.assertEqual(self.sf.epoch(),
1455180875)
self.assertEqual(self.sf.allmotors(),
["Pslit HGap", "MRTSlit UP", "MRTSlit DOWN",
"Sslit1 VOff", "Sslit1 HOff", "Sslit1 VGap"])
def test_scan_labels(self):
self.assertEqual(self.scan1.alllabels(),
['first column', 'second column', '3rd_col'])
def test_data(self):
self.assertAlmostEqual(self.scan1.dataline(3)[2],
-3.14)
self.assertAlmostEqual(self.scan1.datacol(1)[2],
3.14)
# tests for data transposition between original file and .data attr
self.assertAlmostEqual(self.scan1.data()[2, 0],
8)
self.assertEqual(self.scan1.data().shape, (3, 4))
self.assertAlmostEqual(numpy.sum(self.scan1.data()), 113.631)
def test_date(self):
self.assertEqual(self.scan1.date(),
"Thu Feb 11 09:55:20 2016")
def test_motors(self):
self.assertEqual(len(self.sf.allmotors()), 6)
self.assertEqual(len(self.scan1.allmotorpos()), 6)
self.assertAlmostEqual(sum(self.scan1.allmotorpos()),
223.385912)
self.assertEqual(self.sf.allmotors()[1], 'MRTSlit UP')
def test_mca(self):
self.assertEqual(self.scan1_2.mca(2)[2], 5)
self.assertEqual(sum(self.scan1_2.mca(3)), 21.7)
def test_mca_header(self):
self.assertEqual(self.scan1_2.header("CALIB"),
["#@CALIB 1 2 3"])
def suite():
test_suite = unittest.TestSuite()
test_suite.addTest(
unittest.defaultTestLoader.loadTestsFromTestCase(TestSpecfilewrapper))
return test_suite
if __name__ == '__main__':
unittest.main(defaultTest="suite")
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