diff options
Diffstat (limited to 'src/simd_abpoa_align.c')
| -rw-r--r-- | src/simd_abpoa_align.c | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/src/simd_abpoa_align.c b/src/simd_abpoa_align.c index 5505c95..9c2363c 100644 --- a/src/simd_abpoa_align.c +++ b/src/simd_abpoa_align.c @@ -1177,8 +1177,8 @@ void abpoa_free_simd_matrix(abpoa_simd_matrix_t *abm) { // * dp_beg/end, dp_beg/end_sn if band // * pre_n, pre_index int simd_abpoa_realloc(abpoa_t *ab, int gn, int qlen, abpoa_para_t *abpt, SIMD_para_t sp) { - int pn = sp.num_of_value, size = sp.size, sn = (qlen + sp.num_of_value) / pn; - uint64_t s_msize = sn; s_msize = s_msize * abpt->m * size; // qp + uint64_t pn = sp.num_of_value, size = sp.size, sn = (qlen + sp.num_of_value) / pn; + uint64_t s_msize = sn * abpt->m * size; // qp if (abpt->gap_mode == ABPOA_LINEAR_GAP) s_msize += (sn * gn * size); // DP_H, linear else if (abpt->gap_mode == ABPOA_AFFINE_GAP) s_msize += (sn * gn * 3 * size); // DP_HEF, affine @@ -1191,7 +1191,7 @@ int simd_abpoa_realloc(abpoa_t *ab, int gn, int qlen, abpoa_para_t *abpt, SIMD_p // err_func_format_printf(__func__, "Warning: Graph is too large or query is too long.\n"); // return 1; // } - // fprintf(stderr, "%lld, %lld, %lld\n", (long long)node_n, (long long)ab->abm->s_msize, (long long)s_msize); + // fprintf(stderr, "%lld, %lld, %lld\n", (long long)gn, (long long)ab->abm->s_msize, (long long)s_msize); if (s_msize > ab->abm->s_msize) { if (ab->abm->s_mem) SIMDFree(ab->abm->s_mem); kroundup64(s_msize); ab->abm->s_msize = s_msize; |