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bamtools (2.5.2+dfsg-4) unstable; urgency=medium
* Team upload.
* d/control: libbamtools-doc depends on libjs-jquery.
Thanks to Andreas Beckmann (Closes: #988848)
* Standards-Version: 4.6.2 (routine-update)
-- Étienne Mollier <emollier@debian.org> Mon, 19 Dec 2022 22:45:16 +0100
bamtools (2.5.2+dfsg-3) unstable; urgency=medium
* Reduce number of tests also for armel
Closes: #992143
-- Andreas Tille <tille@debian.org> Fri, 02 Dec 2022 13:52:00 +0100
bamtools (2.5.2+dfsg-2) unstable; urgency=medium
* Do not try to move Doxyfile.bak which does not exist any more in doxygen
1.9.4
Closes: #1015861
* Build-Depends: pkg-config (since cmake is asking for it)
* Standards-Version: 4.6.1 (routine-update)
-- Andreas Tille <tille@debian.org> Fri, 02 Sep 2022 19:53:29 +0200
bamtools (2.5.2+dfsg-1) experimental; urgency=medium
[ Michael R. Crusoe ]
* Standards-Version: 4.6.0 (routine-update)
* refresh patches including reworking the shared & static library patch
[ Andreas Tille ]
* Remove Dominique Belhachemi from Uploaders (Thanks Dominique for all
your work)
* Remove unneeded lintian override
[ Étienne Mollier ]
* Remove gcc11.patch
-- Andreas Tille <tille@debian.org> Fri, 18 Mar 2022 13:25:54 +0100
bamtools (2.5.1+dfsg-10) unstable; urgency=medium
* Team upload.
* Add gcc11.patch (Closes: 983981)
* Remove bamtools.lintian-overrides
-- Étienne Mollier <emollier@debian.org> Sat, 06 Nov 2021 19:31:45 +0100
bamtools (2.5.1+dfsg-9) unstable; urgency=medium
[ Steffen Möller ]
* Update metadata - indent and ref to guix
[ Andreas Tille ]
* Extend means to prevent timeouts from amd64 also to armhf and s390x
Closes: #987023
-- Andreas Tille <tille@debian.org> Thu, 15 Apr 2021 21:28:36 +0200
bamtools (2.5.1+dfsg-8) unstable; urgency=medium
* Exclude test that times out on arm64
Closes: #953939
* Standards-Version: 4.5.1 (routine-update)
-- Andreas Tille <tille@debian.org> Wed, 27 Jan 2021 08:26:37 +0100
bamtools (2.5.1+dfsg-7) unstable; urgency=medium
* Override dh_auto_install-indep
Closes: #961777
-- Andreas Tille <tille@debian.org> Fri, 29 May 2020 13:00:25 +0200
bamtools (2.5.1+dfsg-6) unstable; urgency=medium
* Add IsSupplementaryAlignment() patch from bamtools code copy shipped
with tiddit
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Submit.
* Use d-shlibs
* Build additional static lib
-- Andreas Tille <tille@debian.org> Wed, 27 May 2020 12:14:50 +0200
bamtools (2.5.1+dfsg-5) unstable; urgency=medium
* Ignore one test that is known to fail on ppc64el architecture
Closes: #933505
* Set upstream metadata fields: Bug-Database, Repository, Repository-
Browse.
-- Andreas Tille <tille@debian.org> Tue, 10 Dec 2019 12:00:36 +0100
bamtools (2.5.1+dfsg-4) unstable; urgency=medium
[ Jelmer Vernooij ]
* Trim trailing whitespace.
[ Andreas Tille ]
* debhelper-compat 12
* Standards-Version: 4.4.1
* Drop useless get-orig-source target
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
* Trim trailing whitespace.
* Set upstream metadata fields: Repository.
* Remove obsolete fields Name from debian/upstream/metadata.
-- Andreas Tille <tille@debian.org> Thu, 10 Oct 2019 12:59:38 +0200
bamtools (2.5.1+dfsg-3) unstable; urgency=medium
* Point Vcs fields to salsa.debian.org
* Use Breaks+Replaces: libbamtools2.4.0 (<< 2.5.1+dfsg-2~) since the
includes were formerly in lib package
Closes: #894886
-- Andreas Tille <tille@debian.org> Thu, 05 Apr 2018 11:54:57 +0200
bamtools (2.5.1+dfsg-2) unstable; urgency=medium
* Move /usr/includes to -dev from libbamtools2.4.0
* debian/control: add Multi-Arch hints and remove unneeded ${devlibs:Depends}
* Build the shared library.
* drop 0002-support-out-of-source-build patch, as this was fixed differently
upstream
* Match upstream's soname change
-- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 03 Apr 2018 04:18:02 -0700
bamtools (2.5.1+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
* cme fix dpkg-control
* debhelper 11
[ Michael R. Crusoe ]
* Make release ready with cme fix dpkg
* fix built in tests
* debian/rules: remove unused variables; drop custom library install; add
hardening
-- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 02 Apr 2018 09:47:32 -0700
bamtools (2.4.1+dfsg-2) unstable; urgency=medium
* Team upload.
[ Nadiya Sitdykova ]
* add autopkgtest test-suite
[ Afif Elghraoui ]
* remove unused lintian overrides
[ Steffen Moeller ]
* debian/upstream/metadata: Added refs to bio.tools and OMICtools
* debian/copyright: Corrected case of upstream name
* debian/control: Updated policy compliance to 4.0.1
-- Nadiya Sitdykova <rovenskasa@gmail.com> Mon, 07 Aug 2017 17:01:19 -0400
bamtools (2.4.1+dfsg-1) unstable; urgency=medium
* New upstream version
* debhelper 10
* cme fix dpkg-control
* d/watch: version=4
* Priority: optional
* soversion stays at 2.4.0 (FIXME: in future versions this should
be rather 2.5 without micro number)
-- Andreas Tille <tille@debian.org> Fri, 13 Jan 2017 10:47:00 +0100
bamtools (2.4.0+dfsg-6) unstable; urgency=medium
* Whoops, forgot the '+dfsg' in my fix for the movement of the development
docs into their own -doc package. Thanks go to Andreas Beckmann
<anbe@debian.org> for his patience and help. (Closes: 817188)
-- Michael R. Crusoe <crusoe@ucdavis.edu> Thu, 10 Mar 2016 01:38:21 -0800
bamtools (2.4.0+dfsg-5) unstable; urgency=medium
* Fix the movement of the development docs into their own -doc package
(Closes: 817188)
* Fix another typo in upstream
-- Michael R. Crusoe <crusoe@ucdavis.edu> Wed, 09 Mar 2016 00:58:33 -0800
bamtools (2.4.0+dfsg-4) unstable; urgency=medium
* Lower priority to 'extra' due to dependency on libjsoncpp1
* Split out -doc package for library documentation & enable standalone -arch
and -indep building
* Fix spelling error from upstream
* Update Standards-Version
* Update my email address
* Fix Vcs-Git URL
* Quiet some Doxygen warnings
* Add gcc-6 compat
* Include ${devlibs} for -dev package
* Forwarded many patches upstream
* Remove the html docs directory during d/rules clean
-- Michael R. Crusoe <crusoe@ucdavis.edu> Sat, 05 Mar 2016 09:07:48 -0800
bamtools (2.4.0+dfsg-3) unstable; urgency=medium
* allows one to read bam files on big endian systems (Closes: #807979)
* added sam_spec_example.sam and sam_spec_example.bam files
* activated cmake testing framework abd added simple tests
-- Dominique Belhachemi <domibel@debian.org> Sun, 20 Dec 2015 15:41:42 -0500
bamtools (2.4.0+dfsg-2) unstable; urgency=medium
[ Kevin Murray ]
* Fix re-upload confusion
* Fix build of doxygen docs, add docs-base
* Use uscan file renaming to name upstream tarball bamtools-Vxxx.tar.gz
* Refresh patch queue
[ Andreas Tille]
* Fix linitan overides for bamtools
-- Kevin Murray <spam@kdmurray.id.au> Thu, 24 Sep 2015 17:27:16 +1000
bamtools (2.4.0+dfsg-1) unstable; urgency=medium
* New upstream version
* Fix d/watch + get-orig-source target
* Adapt library package name to version number
-- Andreas Tille <tille@debian.org> Sun, 05 Jul 2015 15:41:35 +0200
bamtools (2.3.0+dfsg-3) unstable; urgency=medium
[ Michael R. Crusoe ]
* Make Doxygen documentation generation reproducible by eliminating
timestamps.
[ Andreas Tille ]
* Install cmake file
* Fix some issues in formatting of long descriptions (thanks for the patch
to Daniele Forsi <dforsi@gmail.com>)
Closes: #780437
* cme fix dpkg-control
-- Andreas Tille <tille@debian.org> Mon, 18 May 2015 11:53:14 +0200
bamtools (2.3.0+dfsg-2) unstable; urgency=medium
* Drop d-shlibs patch and add versioned Build-Depends for d-shlibs
Closes: #753210
-- Andreas Tille <tille@debian.org> Mon, 30 Jun 2014 09:50:50 +0200
bamtools (2.3.0+dfsg-1) unstable; urgency=low
* Initial release (Closes: #692498)
-- Andreas Tille <tille@debian.org> Wed, 02 Apr 2014 13:11:47 +0200
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