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|
###############################################################################
#
# Description : CMake build script for libSBML Perl bindings
# Original author(s): Frank Bergmann <fbergman@caltech.edu>
# Organization : California Institute of Technology
#
# This file is part of libSBML. Please visit http://sbml.org for more
# information about SBML, and the latest version of libSBML.
#
# Copyright (C) 2013-2018 jointly by the following organizations:
# 1. California Institute of Technology, Pasadena, CA, USA
# 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
# 3. University of Heidelberg, Heidelberg, Germany
#
# Copyright (C) 2009-2013 jointly by the following organizations:
# 1. California Institute of Technology, Pasadena, CA, USA
# 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
#
# Copyright (C) 2006-2008 by the California Institute of Technology,
# Pasadena, CA, USA
#
# Copyright (C) 2002-2005 jointly by the following organizations:
# 1. California Institute of Technology, Pasadena, CA, USA
# 2. Japan Science and Technology Agency, Japan
#
# This library is free software; you can redistribute it and/or modify it
# under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation. A copy of the license agreement is provided
# in the file named "LICENSE.txt" included with this software distribution
# and also available online as http://sbml.org/software/libsbml/license.html
#
###############################################################################
find_package(SWIG REQUIRED)
include(${SWIG_USE_FILE})
find_package(PythonInterp)
find_package(Perl)
if (APPLE AND PERL_EXECUTABLE)
# cmake does not find the perl library on its own on OSX
# so lets try and help it out:
execute_process(
COMMAND
${PERL_EXECUTABLE} -e "print qq(@INC)"
OUTPUT_VARIABLE
PERL_INCLUDE_PATH
RESULT_VARIABLE
PERL_INCLUDE_PATH_RESULT_VARIABLE
)
if(PERL_INCLUDE_PATH)
separate_arguments(PERL_INCLUDE_PATH)
#message(" PERL_INCLUDE_PATH = ${PERL_INCLUDE_PATH}")
SET(PERL_LIBRARY)
foreach (dir ${PERL_INCLUDE_PATH})
if (EXISTS "${dir}/CORE/libperl.dylib")
set(PERL_LIBRARY "${dir}/CORE/libperl.dylib")
list(INSERT PERL_INCLUDE_PATH 0 "${dir}/CORE")
endif()
endforeach()
if(PERL_LIBRARY)
#message(" PERL_LIBRARY = ${PERL_LIBRARY}")
else()
# something went wrong fall back to the original way
find_package(PerlLibs)
endif()
else()
# something went wrong fall back to the original way
find_package(PerlLibs)
endif()
else()
find_package(PerlLibs)
endif()
####################################################################
#
# determine local dependencies, so as to re-swig if one of them changed
#
file(GLOB SWIG_DEPENDENCIES
${CMAKE_CURRENT_SOURCE_DIR}/*.i
${CMAKE_CURRENT_SOURCE_DIR}/*.h
${CMAKE_CURRENT_SOURCE_DIR}/*.cpp
${CMAKE_CURRENT_SOURCE_DIR}/../swig/*.i
${CMAKE_CURRENT_SOURCE_DIR}/../swig/*.h
)
# fail if we don't have python interpreter
if (NOT EXISTS "${PYTHON_EXECUTABLE}")
message(FATAL_ERROR "The perl language bindings require PYTHON_EXECUTABLE to be set to the python command.")
endif()
####################################################################
#
# generate files that include all packages:
#
# - local-packages.i
file(GLOB DOWNCAST_EXTENSION RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} "${CMAKE_CURRENT_SOURCE_DIR}/local-*.i")
list(REMOVE_ITEM DOWNCAST_EXTENSION "local-packages.i")
# - local-packages.i
update_ifile(
"local-packages.i"
${CMAKE_CURRENT_BINARY_DIR}
"${DOWNCAST_EXTENSION}"
)
# - local-downcast.cpp
file(GLOB DOWNCAST_EXTENSION RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} "${CMAKE_CURRENT_SOURCE_DIR}/local-downcast-packages-*.cpp")
update_cfile(
"local-downcast.cpp"
${CMAKE_CURRENT_BINARY_DIR}
"${DOWNCAST_EXTENSION}"
)
# - local-downcast-extension.cpp
file(GLOB DOWNCAST_EXTENSION RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} "${CMAKE_CURRENT_SOURCE_DIR}/local-downcast-extension-*.cpp")
update_cfile(
"local-downcast-extension.cpp"
${CMAKE_CURRENT_BINARY_DIR}
"${DOWNCAST_EXTENSION}"
)
# - local-downcast-namespaces.cpp
file(GLOB DOWNCAST_EXTENSION RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} "${CMAKE_CURRENT_SOURCE_DIR}/local-downcast-namespaces-*.cpp")
update_cfile(
"local-downcast-namespaces.cpp"
${CMAKE_CURRENT_BINARY_DIR}
"${DOWNCAST_EXTENSION}"
)
# - local-downcast-plugins.cpp
file(GLOB DOWNCAST_EXTENSION RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} "${CMAKE_CURRENT_SOURCE_DIR}/local-downcast-plugins-*.cpp")
update_cfile(
"local-downcast-plugins.cpp"
${CMAKE_CURRENT_BINARY_DIR}
"${DOWNCAST_EXTENSION}"
)
# - local-downcast-plugins.cpp
file(GLOB DOWNCAST_EXTENSION RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} "${CMAKE_CURRENT_SOURCE_DIR}/local-downcast-astplugins-*.cpp")
update_cfile(
"local-downcast-astplugins.cpp"
${CMAKE_CURRENT_BINARY_DIR}
"${DOWNCAST_EXTENSION}"
)
# - local-downcast-converters.cpp
file(GLOB DOWNCAST_EXTENSION RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} "${CMAKE_CURRENT_SOURCE_DIR}/local-downcast-converters-*.cpp")
update_cfile(
"local-downcast-converters.cpp"
${CMAKE_CURRENT_BINARY_DIR}
"${DOWNCAST_EXTENSION}"
)
#
# Remove SWIG wrappers if requested
#
if (LIBSBML_REMOVE_WRAPPERS)
foreach(file
${CMAKE_CURRENT_BINARY_DIR}/LibSBML_wrap.cpp
${CMAKE_CURRENT_BINARY_DIR}/LibSBML.pod
)
if (EXISTS ${file})
FILE(REMOVE ${file})
endif()
endforeach()
endif(LIBSBML_REMOVE_WRAPPERS)
if (WITH_01_COMPILE)
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -O1")
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -O1")
set (CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O1")
set (CMAKE_C_FLAGS_RELEASE "${CMAKE_C_FLAGS_RELEASE} -O1")
endif(WITH_01_COMPILE)
ADD_CUSTOM_COMMAND(
OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/LibSBML_wrap.cpp ${CMAKE_CURRENT_BINARY_DIR}/LibSBML.pod
COMMAND "${PYTHON_EXECUTABLE}"
ARGS "${CMAKE_CURRENT_SOURCE_DIR}/../swig/swigdoc.py"
--language perl
--top "${LIBSBML_ROOT_SOURCE_DIR}"
--master "${CMAKE_CURRENT_SOURCE_DIR}/../swig/libsbml.i"
--output "${CMAKE_CURRENT_BINARY_DIR}/LibSBML.pod"
${SWIG_SWIGDOCDEFINES}
COMMAND "${SWIG_EXECUTABLE}"
ARGS -I${CMAKE_CURRENT_SOURCE_DIR}/../swig/
-I${CMAKE_CURRENT_SOURCE_DIR}
-I${LIBSBML_ROOT_BINARY_DIR}/src
-I${LIBSBML_ROOT_SOURCE_DIR}/src
-I${LIBSBML_ROOT_SOURCE_DIR}/include
-c++
-perl5
-proxy
${SWIG_EXTRA_ARGS}
-o ${CMAKE_CURRENT_BINARY_DIR}/LibSBML_wrap.cpp
${CMAKE_CURRENT_SOURCE_DIR}/LibSBML.i
MAIN_DEPENDENCY ${CMAKE_CURRENT_SOURCE_DIR}/LibSBML.i
DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/CMakeLists.txt
${SWIG_DEPENDENCIES} ${LIBSBML_HEADER_FILES}
COMMENT "Swig Perl bindings source")
add_custom_target(binding_perl_swig DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/LibSBML_wrap.cpp ${CMAKE_CURRENT_BINARY_DIR}/LibSBML.pod )
#
# Determine the perl installation directory
#
set(PERL_PACKAGE_INSTALL_DIR)
set(PERL_PACKAGE_INSTALL_BIN_DIR)
if (UNIX OR CYGWIN)
execute_process(COMMAND "${PERL_EXECUTABLE}" -V:version
OUTPUT_VARIABLE PERL_VERSION OUTPUT_STRIP_TRAILING_WHITESPACE)
if (NOT PERL_VERSION)
message(FATAL_ERROR
"
Could not determine Perl version, please check the variable:
PERL_EXECUTABLE = ${PERL_EXECUTABLE}
")
endif()
string(REPLACE "'" "" PERL_VERSION ${PERL_VERSION})
string(REPLACE ";" "" PERL_VERSION ${PERL_VERSION})
string(REPLACE "version=" "" PERL_VERSION ${PERL_VERSION})
string(REPLACE " " "" PERL_VERSION ${PERL_VERSION})
execute_process(COMMAND "${PERL_EXECUTABLE}" -V:archname
OUTPUT_VARIABLE PERL_PLATFORM OUTPUT_STRIP_TRAILING_WHITESPACE)
string(REPLACE " " "" PERL_PLATFORM ${PERL_PLATFORM})
string(REPLACE "'" "" PERL_PLATFORM ${PERL_PLATFORM})
string(REPLACE ";" "" PERL_PLATFORM ${PERL_PLATFORM})
string(REPLACE "archname=" "" PERL_PLATFORM ${PERL_PLATFORM})
execute_process(COMMAND "${PERL_EXECUTABLE}" -V:vendorarch
OUTPUT_VARIABLE PERL_VENDORARCH OUTPUT_STRIP_TRAILING_WHITESPACE)
string(REPLACE " " "" PERL_VENDORARCH ${PERL_VENDORARCH})
string(REPLACE "'" "" PERL_VENDORARCH ${PERL_VENDORARCH})
string(REPLACE ";" "" PERL_VENDORARCH ${PERL_VENDORARCH})
string(REPLACE "vendorarch=/usr/lib/" "" PERL_VENDORARCH ${PERL_VENDORARCH})
set(PERL_PACKAGE_INSTALL_DIR ${CMAKE_INSTALL_LIBDIR}/${PERL_VENDORARCH})
set(PERL_PACKAGE_INSTALL_BIN_DIR ${PERL_PACKAGE_INSTALL_DIR}/auto/LibSBML)
else()
set(PERL_PACKAGE_INSTALL_DIR ${MISC_PREFIX}bindings/perl)
set(PERL_PACKAGE_INSTALL_BIN_DIR ${PERL_PACKAGE_INSTALL_DIR})
endif()
install(FILES "${CMAKE_CURRENT_BINARY_DIR}/LibSBML.pod" DESTINATION ${PERL_PACKAGE_INSTALL_DIR})
install(FILES "${CMAKE_CURRENT_BINARY_DIR}/LibSBML.pm" DESTINATION ${PERL_PACKAGE_INSTALL_DIR})
file(WRITE "${CMAKE_CURRENT_BINARY_DIR}/LibSBML.cpp" "#ifdef WIN32\n")
file(APPEND "${CMAKE_CURRENT_BINARY_DIR}/LibSBML.cpp" "// do not include MFC\n")
file(APPEND "${CMAKE_CURRENT_BINARY_DIR}/LibSBML.cpp" "#define WIN32_LEAN_AND_MEAN \n")
file(APPEND "${CMAKE_CURRENT_BINARY_DIR}/LibSBML.cpp" "// do not include GDI by default\n")
file(APPEND "${CMAKE_CURRENT_BINARY_DIR}/LibSBML.cpp" "#define NOGDI\n")
file(APPEND "${CMAKE_CURRENT_BINARY_DIR}/LibSBML.cpp" "#endif\n\n")
file(APPEND "${CMAKE_CURRENT_BINARY_DIR}/LibSBML.cpp" "#include <EXTERN.h>\n")
file(APPEND "${CMAKE_CURRENT_BINARY_DIR}/LibSBML.cpp" "#include \"LibSBML_wrap.cpp\"\n")
file(APPEND "${CMAKE_CURRENT_BINARY_DIR}/LibSBML.cpp" "\n\n")
####################################################################
#
# Build native library
#
include_directories(BEFORE ${CMAKE_CURRENT_SOURCE_DIR})
include_directories(BEFORE ${CMAKE_CURRENT_SOURCE_DIR}/../swig)
include_directories(BEFORE ${LIBSBML_ROOT_SOURCE_DIR}/include)
include_directories(BEFORE ${PERL_INCLUDE_PATH})
include_directories(BEFORE ${LIBSBML_ROOT_BINARY_DIR}/src)
include_directories(BEFORE ${CMAKE_CURRENT_BINARY_DIR})
if (EXTRA_INCLUDE_DIRS)
include_directories(${EXTRA_INCLUDE_DIRS})
endif(EXTRA_INCLUDE_DIRS)
if (NOT UNIX)
add_definitions(-DWIN32SCK_IS_STDSCK -DWIN32IO_IS_STDIO)
if (MSVC)
# these definitions are needed for activestate perl 5.14.2
if (LIBSBML_BUILD_TYPE STREQUAL "32bit")
add_definitions( -D_USE_32BIT_TIME_T -DPERL_TEXTMODE_SCRIPTS -DNO_STRICT )
elseif(LIBSBML_BUILD_TYPE STREQUAL "64bit")
add_definitions( -DUSE_64_BIT_INT -DUSE_ITHREADS -DMULTIPLICITY )
endif()
add_definitions(
-DUSE_LARGE_FILES
-DUSE_SITECUSTOMIZE
-DPERL_IMPLICIT_CONTEXT
)
endif()
endif ()
if(APPLE)
#add_definitions(-DPERL_DARWIN)
endif()
if (MSVC)
# the build fails when compiled with packages as the object file is too
# big adding the big flag makes it work!
add_definitions(/bigobj)
endif(MSVC)
add_library(binding_perl_lib MODULE ${CMAKE_CURRENT_BINARY_DIR}/LibSBML.cpp)
set_source_files_properties(${CMAKE_CURRENT_BINARY_DIR}/LibSBML.cpp
PROPERTIES OBJECT_DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/LibSBML_wrap.cpp)
add_dependencies(binding_perl_lib binding_perl_swig)
target_link_libraries(binding_perl_lib ${LIBSBML_LIBRARY}-static ${PERL_LIBRARY})
set_target_properties(binding_perl_lib PROPERTIES OUTPUT_NAME LibSBML)
set_target_properties(binding_perl_lib PROPERTIES PREFIX "")
if(APPLE)
set_target_properties(binding_perl_lib PROPERTIES SUFFIX ".bundle")
endif()
INSTALL(TARGETS binding_perl_lib DESTINATION ${PERL_PACKAGE_INSTALL_BIN_DIR} )
if (WITH_CHECK)
add_test(NAME test_perl_binding
WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
COMMAND ${PERL_EXECUTABLE}
-I${CMAKE_CURRENT_BINARY_DIR}
-I$<TARGET_FILE_DIR:binding_perl_lib>
"-MExtUtils::Command::MM" -e "test_harness(0)"
"${CMAKE_CURRENT_SOURCE_DIR}/t/*.t")
if(UNIX)
if(APPLE)
set_tests_properties(test_perl_binding PROPERTIES ENVIRONMENT "DYLD_LIBRARY_PATH=${CMAKE_CURRENT_BINARY_DIR}:${CMAKE_CURRENT_BINARY_DIR}/../..:$ENV{DYLD_LIBRARY_PATH}")
else()
set_tests_properties(test_perl_binding PROPERTIES ENVIRONMENT "LD_LIBRARY_PATH=/usr/lib/:${CMAKE_CURRENT_BINARY_DIR}:${CMAKE_CURRENT_BINARY_DIR}/../..:$ENV{LD_LIBRARY_PATH}")
endif()
endif()
endif()
|
